BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3496
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 180 bits (456), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 113/175 (64%), Gaps = 30/175 (17%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT GVIT+ +KIRP P+ +KYGS+ FPNFE GV CLREIAKQRC P+SIRLMDN QF+F
Sbjct: 369 GTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQF 428
Query: 110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
G +L+P V F LDGLK+ YITK KGF +++ V TLLFEG R
Sbjct: 429 GHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR-------------- 474
Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+
Sbjct: 475 ---------------EKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYM 514
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 2 LSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVV 59
L L+ TN+S S + +DR+ RAHG L+E+F LR +RIPD+V+WP + K+V
Sbjct: 165 LHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIV 222
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 180 bits (456), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 113/175 (64%), Gaps = 30/175 (17%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT GVIT+ +KIRP P+ +KYGS+ FPNFE GV CLREIAKQRC P+SIRLMDN QF+F
Sbjct: 369 GTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQF 428
Query: 110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
G +L+P V F LDGLK+ YITK KGF +++ V TLLFEG R
Sbjct: 429 GHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR-------------- 474
Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+
Sbjct: 475 ---------------EKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYM 514
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 2 LSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVV 59
L L+ TN+S S + +DR+ RAHG L+E+F LR +RIPD+V+WP + K+V
Sbjct: 165 LHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIV 222
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 112/175 (64%), Gaps = 30/175 (17%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT GVIT+ +KIRP P+ +KYGS+ FPNFE GV CLREIAKQRC P+SI LMDN QF+F
Sbjct: 369 GTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIHLMDNQQFQF 428
Query: 110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
G +L+P V F LDGLK+ YITK KGF +++ V TLLFEG R
Sbjct: 429 GHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR-------------- 474
Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+
Sbjct: 475 ---------------EKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYM 514
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 2 LSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVV 59
L L+ TN+S S + +DR+ RAHG L+E+F LR +RIPD+V+WP + K+V
Sbjct: 165 LHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIV 222
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT G+IT+ V+K+ +P+ +Y +FP F V L++I P+ IR+ D + +
Sbjct: 299 GTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQL 358
Query: 110 GQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKR 154
+ +P G + + Y+ I+ F +C++ + FEG +
Sbjct: 359 SFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPK 403
>pdb|1PJB|A Chain A, L-alanine Dehydrogenase
pdb|1SAY|A Chain A, L-Alanine Dehydrogenase Complexed With Pyruvate
pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With Nad
Length = 361
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 23 AHGQTLYEVFSLRHTGLKRIPDVVVWPGT 51
+H Q YEVF + H G+ +P V W T
Sbjct: 281 SHTQPTYEVFGVVHYGVPNMPGAVPWTAT 309
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEA 81
G FGVIT+ + + P P ++ +V+ +F A
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAA 243
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEA 81
G FGVIT+ + + P P ++ +V+ +F A
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAA 243
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEA 81
G FGVIT+ + + P P ++ +V+ +F A
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAA 243
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEA 81
G FGVIT+ + + P P ++ +V+ +F A
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAA 243
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEA 81
G FGVIT+ + + P P ++ +V+ +F A
Sbjct: 212 GQFGVITRARIAVEPAPARARWVRLVYTDFAA 243
>pdb|2XZE|A Chain A, Structural Basis For Amsh-Escrt-Iii Chmp3 Interaction
pdb|2XZE|B Chain B, Structural Basis For Amsh-Escrt-Iii Chmp3 Interaction
Length = 146
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 58 VVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIA 90
+ L I LPK R Y S V P + V L+EIA
Sbjct: 67 ITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIA 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,607,107
Number of Sequences: 62578
Number of extensions: 273816
Number of successful extensions: 656
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 20
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)