BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3496
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 114/175 (65%), Gaps = 30/175 (17%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT GVIT+ +KIRP+P+ +KYGS+ FPNFE GV CLREIAKQRC P+SIRLMDN QF+F
Sbjct: 369 GTLGVITEATIKIRPVPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNKQFQF 428
Query: 110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
G +L+P V F LDGLK+ YITK KGF +++ V TLLFEG R
Sbjct: 429 GHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR-------------- 474
Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAYI
Sbjct: 475 ---------------EKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYI 514
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 2 LSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVV 59
L L+ TN+S S + +DR+ RAHG L+E+F LR +RIPD+V+WP + K+V
Sbjct: 165 LHDLKETNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIV 222
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus
musculus GN=Agps PE=1 SV=1
Length = 645
Score = 181 bits (458), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 113/175 (64%), Gaps = 30/175 (17%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT GVIT+ +KIRP P+ +KYGS+ FPNFE GV CLREIAKQRC P+SIRLMDN QF+F
Sbjct: 356 GTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQF 415
Query: 110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
G +L+P V F LDGLK+ YITK KGF +++ V TLLFEG R
Sbjct: 416 GHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQISVATLLFEGDR-------------- 461
Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAYI
Sbjct: 462 ---------------EKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYI 501
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 2 LSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVV 59
L L+ +S S + +DR+ RAHG L+E+F LR +RIPD+VVWP + K+V
Sbjct: 152 LQELKEARISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVVWPTCHDDVVKIV 209
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 180 bits (456), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 113/175 (64%), Gaps = 30/175 (17%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT GVIT+ +KIRP P+ +KYGS+ FPNFE GV CLREIAKQRC P+SIRLMDN QF+F
Sbjct: 369 GTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQF 428
Query: 110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
G +L+P V F LDGLK+ YITK KGF +++ V TLLFEG R
Sbjct: 429 GHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR-------------- 474
Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+
Sbjct: 475 ---------------EKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYM 514
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 2 LSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVV 59
L L+ TN+S S + +DR+ RAHG L+E+F LR +RIPD+V+WP + K+V
Sbjct: 165 LHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIV 222
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus
norvegicus GN=Agps PE=2 SV=1
Length = 644
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 112/175 (64%), Gaps = 30/175 (17%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT GVIT+ +KIRP P+ +KYGS+ FPNFE GV CLREIAKQRC P+SIRLMDN QF+F
Sbjct: 355 GTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQF 414
Query: 110 GQSLRP-VPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
G +L+P V F LDG K+ YITK KGF +++ V TLLFEG R
Sbjct: 415 GHALKPQVSSIFTSFLDGFKKFYITKFKGFDPNQISVATLLFEGDR-------------- 460
Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+
Sbjct: 461 ---------------EKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYM 500
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 2 LSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVV 59
L L+ ++S S +DR+ RAHG L+E+F LR +RIPD+VVWP + K+V
Sbjct: 151 LQELKEAHISYSQDADDRVFRAHGHCLHEIFLLREGMFERIPDIVVWPTCHDDVVKIV 208
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster
GN=CG10253 PE=2 SV=1
Length = 631
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 113/174 (64%), Gaps = 29/174 (16%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT GVIT+VVLK+RPLP R+YGS+ FPNFE GV +RE+A++RCQP+S+RLMDN QF F
Sbjct: 322 GTLGVITEVVLKVRPLPSLRRYGSLAFPNFEQGVLFMREVARRRCQPASVRLMDNEQFMF 381
Query: 110 GQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSV 169
GQ+L+P ++ ++D +K+ Y+T KG ++++C TL
Sbjct: 382 GQALKPEKSWWASVVDAMKQRYVTSWKGIDLNQICAATL--------------------- 420
Query: 170 DEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
LFEGD +DV++ +A IY IA KF G PAG NG RGY+LTFVIAYI
Sbjct: 421 --------LFEGDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYI 466
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 8 TNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVV 59
T V S +G DRL+R HGQTL +++SL H +RIPD+VVWP + ++V
Sbjct: 124 TQVDYSAEGIDRLVRCHGQTLNDIYSLWHHKFRRIPDLVVWPRCHDEVVQLV 175
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans
GN=ads-1 PE=2 SV=1
Length = 597
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 103/175 (58%), Gaps = 30/175 (17%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT GV+++V +KI P+P+ +++GS VFPNFE+GV+ RE+A QRCQP+S+RLMDN QF
Sbjct: 298 GTLGVVSEVTIKIFPIPEVKRFGSFVFPNFESGVNFFREVAIQRCQPASLRLMDNDQFVM 357
Query: 110 GQSLR-PVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFS 168
GQ+L+ ++ L + +MYIT KGF VDE+C T ++EG R
Sbjct: 358 GQALKVASDSWWADLKSSVSKMYITSWKGFKVDEICAATCVYEGNR-------------- 403
Query: 169 VDEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
E+V +++ ++ +A +F G+ G NG GY LTF IAY+
Sbjct: 404 ---------------EEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYL 443
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 1 VLSLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVV 59
++ L+ +S S + RL+R HG T++++ +LR + R+PD+VVWP + I K++
Sbjct: 93 IIEFLQENKISFSNEARIRLMRGHGHTVHDMINLREGKIPRLPDIVVWPKSEHEIVKII 151
>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum
GN=eapA PE=1 SV=1
Length = 611
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT G+IT+ V+K+ +P+ +Y +FP F V L++I P+ IR+ D + +
Sbjct: 302 GTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQL 361
Query: 110 GQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKR 154
+ +P G + + Y+ I+ F +C++ + FEG +
Sbjct: 362 SFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPK 406
>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 613
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
G FG++T+ V+KI LP+ ++Y +FP+FE ++ P ++RL D +
Sbjct: 292 GAFGLVTEAVVKIERLPEVKRYEGWLFPSFEVAFTAFHTCTRKGIHPCTMRLYDEDDTRL 351
Query: 110 GQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRV 155
+ G + YI +KG+++ ++ + + FEG +
Sbjct: 352 SFAASTDSGLVSTFFSKCFKKYIATVKGWNLSKISLVVVGFEGTKA 397
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168)
GN=glcD PE=3 SV=1
Length = 470
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDN 104
GT G++T+ ++K+ P P+ +K ++ N +A + +I + P+++ +D
Sbjct: 201 GTLGIVTEAIVKLVPKPETKKTLLALYENIDAAAQTVSDIIAAKIIPATLEFLDQ 255
>sp|Q7TNG8|LDHD_MOUSE Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus
GN=Ldhd PE=1 SV=1
Length = 484
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDN 104
GT G+IT L++ P P+ + FP+ +A V +I + + I +D+
Sbjct: 227 GTLGIITSTTLRLHPAPEATVAATCAFPSVQAAVDSTVQILQAAVPVARIEFLDD 281
>sp|P50323|NODD1_BRAEL Nodulation protein D 1 OS=Bradyrhizobium elkanii GN=nodD1 PE=4 SV=1
Length = 314
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 102 MDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVG 156
M + KFG++LRP + LL GLKR ++GFS+ + +LF+ R+G
Sbjct: 193 MGHVTAKFGRALRPNLEEWFLLEHGLKRRIEVVVQGFSL----IPPILFDTGRIG 243
>sp|Q6GDU5|FNBA_STAAR Fibronectin-binding protein A OS=Staphylococcus aureus (strain
MRSA252) GN=fnbA PE=3 SV=1
Length = 965
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 125 DGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPE 184
DG+K Y T + G + T E + V YI I G + D + VT +L +G E
Sbjct: 339 DGVKNQY-TNVNG------SIETFDKEKNKFTHVAYIKPINGNNSDSVTVTGMLTQGSNE 391
Query: 185 DVKKNQAKIYSIALKFGGIP 204
+ + KIY G+P
Sbjct: 392 NGTQPNVKIYEYVGVENGLP 411
>sp|Q86WU2|LDHD_HUMAN Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens
GN=LDHD PE=1 SV=1
Length = 507
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDN 104
GT G+IT L++ P P+ + FP+ +A V I + + I +D
Sbjct: 250 GTLGLITATTLRLHPAPEATVAATCAFPSVQAAVDSTVHILQAAVPVARIEFLDE 304
>sp|Q65PF1|COAX_BACLD Type III pantothenate kinase OS=Bacillus licheniformis (strain DSM
13 / ATCC 14580) GN=coaX PE=3 SV=1
Length = 258
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 108 KFGQSLRPVPGYFGLLLDGLKRMYITKIKG---FSVDEMCVTTLLFEGKRVGP 157
+FG LR + Y GL+ D ++ + I+ + FS++ MC+ E + VGP
Sbjct: 38 EFGMLLRSLFDYVGLMFDQIEGIIISSVVPPIMFSLERMCIKYFQIEPQIVGP 90
>sp|Q45264|NODD1_BRAJA Nodulation protein D 1 OS=Bradyrhizobium japonicum (strain USDA
110) GN=nodD1 PE=3 SV=1
Length = 314
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 102 MDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVG 156
M + KFG++LRP + LL GL+R ++GFS+ + LL + R+G
Sbjct: 193 MGHVTAKFGRALRPNLEEWFLLEHGLRRRIEVVVQGFSL----IPPLLLDTSRIG 243
>sp|Q9HVX0|HIS81_PSEAE Histidinol-phosphate aminotransferase 1 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=hisC1 PE=3 SV=1
Length = 351
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 43 PDVV-----VWPGTFGVITKVV-----LKIRPLPKCRKYGSIVFPNFEAGVHCLREI--- 89
PDV V+ G +G+ + + +IR R G I+FPN A CL +
Sbjct: 107 PDVTYSFYPVYCGLYGIAHEKIALDERFRIRVEDYARPNGGIIFPNPNAPTGCLLPLDAI 166
Query: 90 -AKQRCQPSSIRLMDNAQFKFG 110
A + P S+ ++D A FG
Sbjct: 167 EAMLKASPDSVVVVDEAYVDFG 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.143 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,967,964
Number of Sequences: 539616
Number of extensions: 3445387
Number of successful extensions: 7795
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7762
Number of HSP's gapped (non-prelim): 32
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)