Query psy3496
Match_columns 223
No_of_seqs 182 out of 1621
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:11:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bby_A Alkyldihydroxyacetoneph 99.8 2.8E-20 9.6E-25 181.5 9.6 154 40-222 358-513 (658)
2 2uuu_A Alkyldihydroxyacetoneph 99.7 4.5E-18 1.5E-22 164.5 11.5 154 40-222 288-442 (584)
3 3pm9_A Putative oxidoreductase 99.5 2E-14 6.9E-19 135.8 11.1 117 40-203 201-319 (476)
4 1e8g_A Vanillyl-alcohol oxidas 99.5 5.6E-14 1.9E-18 134.7 8.4 145 40-218 248-399 (560)
5 1f0x_A DLDH, D-lactate dehydro 99.3 1.2E-12 4.2E-17 126.5 6.5 71 41-112 246-320 (571)
6 1wvf_A 4-cresol dehydrogenase 99.3 9.9E-12 3.4E-16 117.8 10.6 134 40-205 216-352 (520)
7 2exr_A Cytokinin dehydrogenase 99.1 1.4E-11 4.6E-16 117.4 1.5 127 41-206 213-351 (524)
8 1w1o_A Cytokinin dehydrogenase 98.5 2.1E-08 7.3E-13 95.2 2.7 66 43-108 222-293 (534)
9 1hsk_A UDP-N-acetylenolpyruvoy 97.8 1.3E-07 4.3E-12 85.3 -8.7 37 173-209 272-309 (326)
10 2vfr_A Xylitol oxidase, aldito 97.6 1.6E-05 5.6E-10 73.1 1.8 60 45-109 162-223 (422)
11 2yvs_A Glycolate oxidase subun 96.8 0.00024 8.4E-09 60.7 0.5 40 40-79 88-128 (219)
12 2bvf_A 6-hydroxy-D-nicotine ox 95.8 0.013 4.4E-07 54.4 6.4 42 50-91 190-235 (459)
13 3tsh_A Pollen allergen PHL P 4 95.8 0.0072 2.5E-07 56.7 4.5 41 50-90 210-250 (500)
14 3fw9_A Reticuline oxidase; BI- 95.7 0.012 4.3E-07 55.6 5.9 41 50-90 201-242 (495)
15 3vte_A Tetrahydrocannabinolic 95.1 0.031 1E-06 53.3 6.2 41 50-90 209-250 (518)
16 1zr6_A Glucooligosaccharide ox 94.9 0.011 3.7E-07 55.8 2.7 42 50-91 196-241 (503)
17 3rja_A Carbohydrate oxidase; p 94.8 0.044 1.5E-06 51.3 6.3 42 50-91 192-238 (473)
18 4feh_A Oxidoreductase DPRE1; a 93.7 0.073 2.5E-06 50.1 5.4 41 50-90 199-240 (481)
19 2wdx_A Putative hexose oxidase 90.8 0.29 1E-05 46.3 5.7 28 50-77 219-258 (523)
20 2i0k_A Oxidoreductase; MIX alp 89.8 0.12 4.2E-06 49.3 2.1 38 46-85 203-240 (561)
21 2ipi_A Aclacinomycin oxidoredu 89.6 0.31 1.1E-05 46.0 4.7 27 50-76 217-255 (521)
22 2y3s_A TAML; oxidoreductase; H 88.3 0.5 1.7E-05 44.8 5.2 27 50-76 220-259 (530)
23 3pop_A GILR oxidase; FAD bindi 84.1 1.2 4.1E-05 42.0 5.3 28 50-77 196-234 (501)
24 1uxy_A MURB, uridine diphospho 81.0 1.1 3.6E-05 40.4 3.5 44 50-93 166-215 (340)
25 3i99_A UDP-N-acetylenolpyruvoy 79.1 1.6 5.4E-05 39.7 4.1 43 50-93 182-230 (357)
26 3tx1_A UDP-N-acetylenolpyruvoy 71.8 1.8 6.1E-05 38.6 2.3 42 40-91 191-232 (322)
27 3js8_A Cholesterol oxidase; ch 69.2 1.6 5.3E-05 42.0 1.4 38 45-84 198-235 (540)
28 2gqt_A UDP-N-acetylenolpyruvyl 68.6 2.1 7.3E-05 37.2 2.0 30 54-92 161-190 (268)
29 2dnh_A Bruno-like 5, RNA bindi 57.0 25 0.00086 24.5 5.7 42 50-91 37-78 (105)
30 3ulh_A THO complex subunit 4; 56.8 23 0.0008 24.8 5.6 42 50-91 51-92 (107)
31 2do4_A Squamous cell carcinoma 54.6 29 0.001 24.0 5.7 42 50-91 39-80 (100)
32 2ywk_A Putative RNA-binding pr 53.9 24 0.00084 24.1 5.1 42 50-91 38-79 (95)
33 4bby_A Alkyldihydroxyacetoneph 51.6 8.6 0.0003 37.2 3.1 47 3-49 166-212 (658)
34 1x5o_A RNA binding motif, sing 50.9 53 0.0018 23.2 6.7 43 50-92 47-89 (114)
35 2do0_A HnRNP M, heterogeneous 50.9 36 0.0012 24.1 5.8 42 50-91 37-78 (114)
36 3nmr_A Cugbp ELAV-like family 49.9 52 0.0018 24.4 6.8 43 50-92 117-159 (175)
37 3ue2_A Poly(U)-binding-splicin 48.5 30 0.001 25.9 5.2 57 50-106 47-110 (118)
38 3s8s_A Histone-lysine N-methyl 47.6 39 0.0013 24.5 5.6 42 50-91 28-70 (110)
39 2pe8_A Splicing factor 45; RRM 47.6 37 0.0013 24.6 5.5 55 50-104 35-93 (105)
40 1jmt_A Splicing factor U2AF 35 47.4 32 0.0011 24.9 5.0 41 51-91 50-90 (104)
41 2cqc_A Arginine/serine-rich sp 45.3 50 0.0017 22.3 5.6 41 50-90 37-78 (95)
42 2d9p_A Polyadenylate-binding p 45.0 50 0.0017 22.9 5.7 41 50-91 37-77 (103)
43 4fxv_A ELAV-like protein 1; RN 44.9 64 0.0022 22.7 6.3 41 50-90 41-82 (99)
44 3md3_A Nuclear and cytoplasmic 44.3 40 0.0014 24.7 5.3 42 50-91 22-63 (166)
45 2dhg_A TRNA selenocysteine ass 42.3 44 0.0015 23.2 5.0 42 50-91 31-73 (104)
46 3bs9_A Nucleolysin TIA-1 isofo 42.0 65 0.0022 21.3 5.7 42 50-91 28-70 (87)
47 3md1_A Nuclear and cytoplasmic 40.7 68 0.0023 21.0 5.6 41 50-90 23-64 (83)
48 1p27_B RNA-binding protein 8A; 40.5 66 0.0023 22.3 5.8 42 50-91 45-87 (106)
49 3v4m_A Splicing factor U2AF 65 37.9 28 0.00095 25.3 3.4 58 50-107 37-99 (105)
50 2cq3_A RNA-binding protein 9; 37.5 52 0.0018 22.8 4.8 41 50-91 37-77 (103)
51 2cpz_A CUG triplet repeat RNA- 37.5 56 0.0019 23.2 5.0 42 50-91 47-89 (115)
52 2dgv_A HnRNP M, heterogeneous 36.2 83 0.0029 21.1 5.6 41 50-91 30-70 (92)
53 2dgo_A Cytotoxic granule-assoc 34.9 70 0.0024 22.6 5.2 41 50-90 37-78 (115)
54 2dnz_A Probable RNA-binding pr 34.6 66 0.0022 21.8 4.8 42 50-91 27-69 (95)
55 3nmr_A Cugbp ELAV-like family 32.8 78 0.0027 23.3 5.4 41 51-91 26-69 (175)
56 2cq0_A Eukaryotic translation 32.8 89 0.003 21.5 5.4 41 50-90 37-78 (103)
57 1x4a_A Splicing factor, argini 32.4 54 0.0019 23.0 4.2 40 50-91 44-83 (109)
58 2cpf_A RNA binding motif prote 32.2 68 0.0023 21.9 4.6 41 50-90 27-71 (98)
59 2krb_A Eukaryotic translation 32.1 24 0.00083 23.6 2.1 39 51-90 30-68 (81)
60 2cpi_A CCR4-NOT transcription 32.0 88 0.003 22.2 5.3 42 50-91 40-85 (111)
61 2fy1_A RNA-binding motif prote 31.6 41 0.0014 24.4 3.4 41 50-90 29-69 (116)
62 3sde_A Paraspeckle component 1 31.5 1.1E+02 0.0039 24.9 6.6 55 50-104 118-178 (261)
63 2jrs_A RNA-binding protein 39; 31.2 1.2E+02 0.0041 21.5 5.9 42 50-91 48-90 (108)
64 1x4e_A RNA binding motif, sing 31.1 1.1E+02 0.0037 20.2 5.4 43 50-92 27-70 (85)
65 3s6e_A RNA-binding protein 39; 31.1 38 0.0013 25.2 3.2 54 50-106 39-94 (114)
66 4f25_A Polyadenylate-binding p 30.0 97 0.0033 22.1 5.3 41 50-91 27-67 (115)
67 2dnq_A RNA-binding protein 4B; 30.0 65 0.0022 21.7 4.2 35 50-91 30-64 (90)
68 1whw_A Hypothetical protein ri 29.6 42 0.0014 23.1 3.1 42 50-91 30-72 (99)
69 2dgx_A KIAA0430 protein; RRM d 29.5 49 0.0017 22.9 3.5 39 51-91 36-74 (96)
70 1fxl_A Paraneoplastic encephal 29.3 1.1E+02 0.0037 22.2 5.6 42 50-91 24-66 (167)
71 1b7f_A Protein (SXL-lethal pro 29.0 1.7E+02 0.0057 21.3 7.0 43 50-92 111-154 (168)
72 3ns6_A Eukaryotic translation 29.0 45 0.0015 23.4 3.2 42 50-91 34-76 (100)
73 2kt5_A RNA and export factor-b 28.9 60 0.002 23.4 4.0 42 50-91 57-98 (124)
74 1u6f_A Tcubp1, RNA-binding pro 28.8 81 0.0028 23.0 4.8 42 50-91 64-106 (139)
75 2dit_A HIV TAT specific factor 28.4 43 0.0015 24.0 3.1 39 50-91 48-86 (112)
76 1s79_A Lupus LA protein; RRM, 28.4 78 0.0027 22.6 4.5 38 50-87 33-70 (103)
77 2cqi_A Nucleolysin TIAR; RNA r 28.3 86 0.0029 21.6 4.6 41 50-91 37-77 (103)
78 1x5s_A Cold-inducible RNA-bind 28.3 56 0.0019 22.5 3.6 42 50-91 34-76 (102)
79 3dxb_A Thioredoxin N-terminall 28.1 2E+02 0.0068 22.7 7.4 58 50-107 151-215 (222)
80 1h2v_Z 20 kDa nuclear CAP bind 28.0 96 0.0033 23.2 5.2 41 50-90 61-102 (156)
81 3r27_A HnRNP L, heterogeneous 27.9 57 0.002 23.9 3.7 38 50-92 43-80 (100)
82 1x5p_A Negative elongation fac 27.5 47 0.0016 22.9 3.1 37 50-91 35-71 (97)
83 2e5h_A Zinc finger CCHC-type a 27.5 47 0.0016 22.5 3.0 41 50-90 38-79 (94)
84 1x4d_A Matrin 3; structural ge 26.8 66 0.0023 23.3 3.9 38 50-92 38-75 (102)
85 3smz_A Protein raver-1, ribonu 26.7 92 0.0031 25.5 5.2 42 50-91 207-248 (284)
86 2cqg_A TDP-43, TAR DNA-binding 26.7 1.3E+02 0.0045 20.6 5.4 38 50-87 37-75 (103)
87 2cph_A RNA binding motif prote 26.3 64 0.0022 22.3 3.6 40 50-89 37-78 (107)
88 3mdf_A Peptidyl-prolyl CIS-tra 25.9 74 0.0025 20.9 3.7 42 50-91 29-71 (85)
89 4a8x_A RNA-binding protein wit 25.7 57 0.0019 21.6 3.1 42 50-91 26-69 (88)
90 2la4_A Nuclear and cytoplasmic 25.3 65 0.0022 22.2 3.5 36 50-90 49-84 (101)
91 2kxn_B Transformer-2 protein h 25.0 1.2E+02 0.0039 22.5 5.1 42 50-91 68-110 (129)
92 2ek1_A RNA-binding protein 12; 24.4 70 0.0024 21.6 3.5 42 50-91 37-79 (95)
93 2la6_A RNA-binding protein FUS 24.2 1.6E+02 0.0054 20.1 5.4 42 50-91 35-85 (99)
94 1fxl_A Paraneoplastic encephal 23.9 1.6E+02 0.0056 21.2 5.7 42 50-91 110-152 (167)
95 3lqv_A PRE-mRNA branch site pr 23.8 74 0.0025 22.4 3.6 40 50-91 30-69 (115)
96 3md3_A Nuclear and cytoplasmic 23.5 1.6E+02 0.0055 21.2 5.6 42 50-91 109-151 (166)
97 2x1f_A MRNA 3'-END-processing 23.3 85 0.0029 21.4 3.8 42 50-91 24-66 (96)
98 3s7r_A Heterogeneous nuclear r 23.1 1.5E+02 0.005 19.6 4.9 38 50-87 33-71 (87)
99 2dnm_A SRP46 splicing factor; 23.0 42 0.0014 23.3 2.1 42 50-91 35-77 (103)
100 2dgp_A Bruno-like 4, RNA bindi 22.8 96 0.0033 21.4 4.0 43 50-92 35-78 (106)
101 1wi8_A EIF-4B, eukaryotic tran 22.8 53 0.0018 22.9 2.6 39 50-90 37-77 (104)
102 1x4f_A Matrin 3; structural ge 22.6 58 0.002 24.2 2.9 38 50-92 48-85 (112)
103 2xnq_A Nuclear polyadenylated 22.4 92 0.0031 21.6 3.8 34 50-90 45-78 (97)
104 2cq2_A Hypothetical protein LO 22.1 61 0.0021 24.3 2.9 37 50-91 49-85 (114)
105 3ex7_B RNA-binding protein 8A; 21.8 70 0.0024 23.0 3.2 42 50-91 44-86 (126)
106 2qfj_A FBP-interacting repress 21.6 1.8E+02 0.0063 22.1 5.8 42 50-91 147-189 (216)
107 1rk8_A CG8781-PA, CG8781-PA pr 21.5 1.8E+02 0.0063 22.0 5.7 42 50-91 94-136 (165)
108 1p1t_A Cleavage stimulation fa 21.4 1.1E+02 0.0037 21.0 4.0 42 50-91 30-72 (104)
109 2kvi_A Nuclear polyadenylated 20.7 1E+02 0.0034 21.1 3.7 35 50-91 33-67 (96)
110 2g4b_A Splicing factor U2AF 65 20.7 1.4E+02 0.0048 21.9 4.8 42 50-91 116-158 (172)
111 2lkz_A RNA-binding protein 5; 20.6 55 0.0019 23.2 2.3 42 50-91 31-75 (95)
112 1x5u_A Splicing factor 3B subu 20.4 62 0.0021 22.4 2.5 41 50-90 37-78 (105)
113 2jvo_A Nucleolar protein 3; nu 20.3 95 0.0033 22.1 3.6 35 50-91 53-87 (108)
114 1wf1_A RNA-binding protein RAL 20.2 61 0.0021 22.8 2.5 35 50-91 50-84 (110)
115 2d9o_A DNAJ (HSP40) homolog, s 20.1 1.1E+02 0.0036 22.1 3.8 34 51-88 40-73 (100)
No 1
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.81 E-value=2.8e-20 Score=181.50 Aligned_cols=154 Identities=58% Similarity=1.019 Sum_probs=123.8
Q ss_pred CcCCceeeec-CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHcCCCceEEEeechhhHHHhhhcCCCC-
Q psy3496 40 KRIPDVVVWP-GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVP- 117 (223)
Q Consensus 40 ~~l~~L~~g~-GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~sgl~PsalElmD~~~l~~v~~~~~~~- 117 (223)
+||.+|++|| ||||||||++|||+|+|+.+.++++.|+|+++|+++++++.++++.|+++|+||...++......+..
T Consensus 358 yDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~~~psa~El~D~~~~~~~~~~~~~~~ 437 (658)
T 4bby_A 358 PDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVS 437 (658)
T ss_dssp SCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHHHHTSSCCC
T ss_pred cCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcCCCccccccccHHHHHHHHhhccccc
Confidence 7999999999 99999999999999999999999999999999999999999999999999999999998876533221
Q ss_pred CccchhhhhhhhhhhhhhcCCCccchhhhhhhccccccCCccceeeccccccccceeEEEEEEcCHHHHHHHHHHHHHHH
Q psy3496 118 GYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIA 197 (223)
Q Consensus 118 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~eG~~~~v~~~~~~i~~i~ 197 (223)
.......++. ..-+++...|+..+..+..++.|||+.+.+..+.+.+.+++
T Consensus 438 ~~~~~~~~~~-----------------------------~~~~l~~~~g~~~~~~~~~~~~~eg~~~~v~~~~~~~~~~~ 488 (658)
T 4bby_A 438 SIFTSFLDGL-----------------------------KKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIA 488 (658)
T ss_dssp CTTCC-------------------------------------------CCCTTTCEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred ccccccccch-----------------------------hhhhhhhhccCChHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1111111111 11245566677777788888899999999999999999999
Q ss_pred HHcCCccCCCcccccceeeeeEEec
Q psy3496 198 LKFGGIPAGETNGMRGYMLTFVIAY 222 (223)
Q Consensus 198 ~~~G~~~~g~~~~~~~~~~~~~~~y 222 (223)
.++|+...++.++++|+..+|..+|
T Consensus 489 ~~~g~~~~~~~~~~~~~~~~~~~~~ 513 (658)
T 4bby_A 489 AKFGGLAAGEDNGQRGYLLTYVIAY 513 (658)
T ss_dssp HTTTCEECCHHHHHHHHHHHHHHHH
T ss_pred HhhCcchhhhhHHHHHHHHhhHHHH
Confidence 9999999999999999999887765
No 2
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.74 E-value=4.5e-18 Score=164.49 Aligned_cols=154 Identities=22% Similarity=0.463 Sum_probs=121.8
Q ss_pred CcCCceeeec-CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHcCCCceEEEeechhhHHHhhhcCCCCC
Q psy3496 40 KRIPDVVVWP-GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPG 118 (223)
Q Consensus 40 ~~l~~L~~g~-GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~sgl~PsalElmD~~~l~~v~~~~~~~g 118 (223)
+|+.++++|+ |||||||+++|||+|.|+...+..+.|++++++++++.++.++++.|+++|+||+.+++......+.++
T Consensus 288 ~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~p~a~El~d~~~~~~~~~~~~~~~ 367 (584)
T 2uuu_A 288 INYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPSKG 367 (584)
T ss_dssp CCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHHTCCCSEEEEECHHHHHHHHHTCCSCC
T ss_pred cchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHHhcCCCceEEEEechhHHHHHhhccCccc
Confidence 7888888888 999999999999999999999999999999999999999999999999999999998886544332222
Q ss_pred ccchhhhhhhhhhhhhhcCCCccchhhhhhhccccccCCccceeeccccccccceeEEEEEEcCHHHHHHHHHHHHHHHH
Q psy3496 119 YFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIAL 198 (223)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~eG~~~~v~~~~~~i~~i~~ 198 (223)
...++.+.+.+.|+.+.++++.+. .|.+++.|+|+.++++++.+++.++|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~llve~~g~~~~v~~~~~~~~~~~~ 418 (584)
T 2uuu_A 368 AVSEFTSAMVKKYLHYIRSFDFKN-----------------------------VCLSIIGFEGPKKVVDFHRTSVFDILS 418 (584)
T ss_dssp CTTCCHHHHHHHHHHHTTTSCTTT-----------------------------CEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHhhhhccCCCCCc-----------------------------cEEEEEEEecChHHHHHHHHHHHHHHH
Confidence 333333333334543223554322 456677799999999999999999999
Q ss_pred HcCCccCCCcccccceeeeeEEec
Q psy3496 199 KFGGIPAGETNGMRGYMLTFVIAY 222 (223)
Q Consensus 199 ~~G~~~~g~~~~~~~~~~~~~~~y 222 (223)
++|+...+++..+.|+..++..+|
T Consensus 419 ~~g~~~~~~~~~~lW~~r~~~~~~ 442 (584)
T 2uuu_A 419 KNAAFGLGSAPGKTWAEKRYDLPY 442 (584)
T ss_dssp TTTCEEEEEESTTHHHHGGGGHHH
T ss_pred HCCCccchHHHHHHHHHhhhchHH
Confidence 999988888888899988876665
No 3
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=99.54 E-value=2e-14 Score=135.79 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=95.3
Q ss_pred CcCCceeeec-CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH-cCCCceEEEeechhhHHHhhhcCCCC
Q psy3496 40 KRIPDVVVWP-GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK-QRCQPSSIRLMDNAQFKFGQSLRPVP 117 (223)
Q Consensus 40 ~~l~~L~~g~-GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~-sgl~PsalElmD~~~l~~v~~~~~~~ 117 (223)
+|+.++++|+ |||||||+++|||+|.|+...++++.|+|+++|++++.++.+ +|..|+++|+||+.+++.+++
T Consensus 201 ~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~p~a~El~d~~~~~~~~~----- 275 (476)
T 3pm9_A 201 YDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVR----- 275 (476)
T ss_dssp CCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHHHHHGGGEEEEEEEEHHHHHHHHH-----
T ss_pred cCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHHHhcCCCceEEEecCHHHHHHHHh-----
Confidence 6788888887 999999999999999999999999999999999999999986 589999999999999998876
Q ss_pred CccchhhhhhhhhhhhhhcCCCccchhhhhhhccccccCCccceeeccccccccceeEEEEEEcCHHHHHHHHHHHHHHH
Q psy3496 118 GYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIA 197 (223)
Q Consensus 118 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~eG~~~~v~~~~~~i~~i~ 197 (223)
|. ..+.|.++ +..+.+++.|+|+.++++++.+++.++|
T Consensus 276 -------------~~--~~~~~~~~---------------------------~~~~~llve~~g~~~~~~~~~~~~~~~~ 313 (476)
T 3pm9_A 276 -------------HA--NNRDPLEA---------------------------RYPWYVLIELSSPRDDARAALESILERG 313 (476)
T ss_dssp -------------HT--TCCCCSSS---------------------------CCSEEEEEEEEESSSCHHHHHHHHHHHH
T ss_pred -------------cc--CCCCCCCc---------------------------cCCeEEEEEEccCcHHHHHHHHHHHHHH
Confidence 21 11222211 0134556668898888889999999999
Q ss_pred HHcCCc
Q psy3496 198 LKFGGI 203 (223)
Q Consensus 198 ~~~G~~ 203 (223)
.+.|+.
T Consensus 314 ~~~g~~ 319 (476)
T 3pm9_A 314 FEDGIV 319 (476)
T ss_dssp HHTTCC
T ss_pred HhcCCC
Confidence 988764
No 4
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=99.47 E-value=5.6e-14 Score=134.69 Aligned_cols=145 Identities=11% Similarity=-0.005 Sum_probs=93.8
Q ss_pred CcCCceeeecCceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHH---HHHHHcCCCceEEEeechhhHHHhhhcCCC
Q psy3496 40 KRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCL---REIAKQRCQPSSIRLMDNAQFKFGQSLRPV 116 (223)
Q Consensus 40 ~~l~~L~~g~GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av---~~i~~sgl~PsalElmD~~~l~~v~~~~~~ 116 (223)
|++.+|+.+ |||||||+++|||+|.|+...++++.|+|+++|.+++ +++.++++.|+++|+||... +.+.- ...
T Consensus 248 y~l~~L~~~-GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~p~~~el~d~~~-~~~~l-~~~ 324 (560)
T 1e8g_A 248 PYIDGLFSQ-SNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILL-DAAVL-GDK 324 (560)
T ss_dssp CCCGGGGSS-SSSEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHHHHHHHHHTTSSCSCCEEEEHHH-HHHHH-CCG
T ss_pred cchhccccc-CcEEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHHHHHHHHHcCCCcceeEEechHH-Hhhhh-hhh
Confidence 567777664 8999999999999999999999999999999976665 55667899999999999984 32210 000
Q ss_pred CCccchhhhhhhhhhhhhhcCCCccchhhhhhhccccccCCccceeeccccccccceeEEEEEEcCHHHHHHHHHHHHHH
Q psy3496 117 PGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSI 196 (223)
Q Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~eG~~~~v~~~~~~i~~i 196 (223)
.. |.....++|.+. ...+.++ .. ...+.+++.++|++++++++.+++.++
T Consensus 325 ~~------------~~~~~~~~p~~~---~~~l~~~--------------~~-~~~~~l~~e~~g~~~~v~~~~~~i~~i 374 (560)
T 1e8g_A 325 RS------------YSSRTEPLSDEE---LDKIAKQ--------------LN-LGRWNFYGALYGPEPIRRVLWETIKDA 374 (560)
T ss_dssp GG------------TCCCSSCCCHHH---HHHHHHH--------------HT-CCSEEEEEEEESCHHHHHHHHHHHHHH
T ss_pred hh------------hccCCCCCCHHH---HHHHHhh--------------cC-CCceEEEEEEeCCHHHHHHHHHHHHHH
Confidence 00 110000122110 0000000 00 012355666899999999999999999
Q ss_pred HHHcCCccC--CCc--ccccceeeee
Q psy3496 197 ALKFGGIPA--GET--NGMRGYMLTF 218 (223)
Q Consensus 197 ~~~~G~~~~--g~~--~~~~~~~~~~ 218 (223)
|+++|+..+ .+. ..+.||. |.
T Consensus 375 ~~~~~~~~~~~~~~~~e~~~~w~-R~ 399 (560)
T 1e8g_A 375 FSAIPGVKFYFPEDTPENSVLRV-RD 399 (560)
T ss_dssp HTTSTTCEEECGGGSCTTCHHHH-HH
T ss_pred HHhCCCceeeccccchhhhhHHH-HH
Confidence 999997543 222 2445664 53
No 5
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=99.32 E-value=1.2e-12 Score=126.48 Aligned_cols=71 Identities=15% Similarity=0.022 Sum_probs=65.9
Q ss_pred cCCcee--eec-CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH-cCCCceEEEeechhhHHHhhh
Q psy3496 41 RIPDVV--VWP-GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK-QRCQPSSIRLMDNAQFKFGQS 112 (223)
Q Consensus 41 ~l~~L~--~g~-GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~-sgl~PsalElmD~~~l~~v~~ 112 (223)
||.+|+ +|+ ||||| |+++||++|.|+...++++.|+|++++.++++++.+ .+..|+++|+||+..++.+++
T Consensus 246 Dl~~l~~a~GseGtlGV-t~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~a~E~~d~~~~~~~~~ 320 (571)
T 1f0x_A 246 DPDRLFESSGCAGKLAV-FAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEK 320 (571)
T ss_dssp CGGGCCSSTTCTTSSEE-EEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHHHHCSSCCSEEEEEEHHHHHHHC-
T ss_pred cHHHHHHhcCCCCceeE-EEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHH
Confidence 888899 888 99999 999999999999999999999999999999999984 788999999999999998765
No 6
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=99.29 E-value=9.9e-12 Score=117.78 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=89.6
Q ss_pred CcCCceeeecCceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHH---HHHHHHHcCCCceEEEeechhhHHHhhhcCCC
Q psy3496 40 KRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVH---CLREIAKQRCQPSSIRLMDNAQFKFGQSLRPV 116 (223)
Q Consensus 40 ~~l~~L~~g~GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~---av~~i~~sgl~PsalElmD~~~l~~v~~~~~~ 116 (223)
|++.+|+++ |||||||+++|||+|.|+...++++.|++++++.+ ++.++.++++.|+++|+||+..+..+......
T Consensus 216 y~l~~l~~g-~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~p~a~El~d~~~~~~~~~~~~~ 294 (520)
T 1wvf_A 216 PTLDGMFTQ-ANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRA 294 (520)
T ss_dssp CCCHHHHTT-SSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHHHHHHHHHTTSSCSCEEEEEHHHHHHHTTCCGG
T ss_pred cchhhhccC-CceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHHHHcCCCccceEeccHHHHHHHhcccch
Confidence 666777765 49999999999999999999999999999887655 66777788999999999999977655331000
Q ss_pred CCccchhhhhhhhhhhhhhcCCCccchhhhhhhccccccCCccceeeccccccccceeEEEEEEcCHHHHHHHHHHHHHH
Q psy3496 117 PGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSI 196 (223)
Q Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~eG~~~~v~~~~~~i~~i 196 (223)
. |.....++|.+. ...++++. . ...+.+++.|+|++++++++.+++.++
T Consensus 295 -~------------~~~~~~~~~~~~---~~~~~~~~--------------~-~~~~~l~~~~~g~~~~v~~~~~~i~~~ 343 (520)
T 1wvf_A 295 -Q------------YTTEPGHTPDSV---IKQMQKDT--------------G-MGAWNLYAALYGTQEQVDVNWKIVTDV 343 (520)
T ss_dssp -G------------TCCCSSSCCHHH---HHHHHHHH--------------C-CCSEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred -h------------hccCCCCCCHHH---HHHHHHhc--------------C-CCceEEEEEEeCCHHHHHHHHHHHHHH
Confidence 0 000000111100 00000000 0 012344555899999999999999999
Q ss_pred HHHcCCccC
Q psy3496 197 ALKFGGIPA 205 (223)
Q Consensus 197 ~~~~G~~~~ 205 (223)
++++|+..+
T Consensus 344 ~~~~~~~~~ 352 (520)
T 1wvf_A 344 FKKLGKGRI 352 (520)
T ss_dssp HHHHTCCEE
T ss_pred HHHcCCeEE
Confidence 999886543
No 7
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=99.10 E-value=1.4e-11 Score=117.42 Aligned_cols=127 Identities=15% Similarity=0.219 Sum_probs=88.9
Q ss_pred cCCceeeec-CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHcCCCceEEEeechhhHHHhhhcCCCCCc
Q psy3496 41 RIPDVVVWP-GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGY 119 (223)
Q Consensus 41 ~l~~L~~g~-GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~sgl~PsalElmD~~~l~~v~~~~~~~g~ 119 (223)
||..+++|+ |||||||+++|||+|.|+...++.+.|++++++.+++..+.+++.. +++|+||...+...+...+ ++
T Consensus 213 dL~~~~~Gs~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~~~~~~~~l~~~~~~-~~~e~~d~~~~~~~~~~~~--~~ 289 (524)
T 2exr_A 213 ELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDAEWLVSQKNE-SSFDYVEGFVFVNGADPVN--GW 289 (524)
T ss_dssp HHHHHHTTCTTSSEEEEEEEEEEEECCSEEEEEEEEESCHHHHHHHHHHHHTSCTT-SSCSEEEEEEEESSCCTTT--SG
T ss_pred hHHhHhhcCCCccEEEEEEEEEEEEcCCeeEEEEEEeCCHHHHHHHHHHHHHcCCc-chhHhhchhhhhcchhhhh--hh
Confidence 334456666 9999999999999999999999999999999999999999988877 8999999876654321000 00
Q ss_pred cchhhhhhhhhhhh-----hhcCCCccchhhhhhhccccccCCccceeeccccccccceeEEEEE-----Ec-CHHHHHH
Q psy3496 120 FGLLLDGLKRMYIT-----KIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLF-----EG-DPEDVKK 188 (223)
Q Consensus 120 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-----eG-~~~~v~~ 188 (223)
...|.. ...++|.+ +..+.+++.| +| +++++++
T Consensus 290 --------~~~~~~~~~~~~~~~~p~~----------------------------~~~~~llve~~~~~~~g~~~~~v~~ 333 (524)
T 2exr_A 290 --------PTVPLHPDHEFDPTRLPQS----------------------------CGSVLYCLELGLHYRDSDSNSTIDK 333 (524)
T ss_dssp --------GGSCSSTTSCCCGGGSCTT----------------------------CCSEEEEEEEEEEECTTSCHHHHHH
T ss_pred --------hhcccccccccchhcCCcc----------------------------cccEEEEEEEEeecCCCCCHHHHHH
Confidence 000000 00122210 1123445556 78 7888999
Q ss_pred HHHHHHHHHHHcCCccCC
Q psy3496 189 NQAKIYSIALKFGGIPAG 206 (223)
Q Consensus 189 ~~~~i~~i~~~~G~~~~g 206 (223)
+.+++.++++++|+....
T Consensus 334 ~~~~~~~~l~~~~~~~~~ 351 (524)
T 2exr_A 334 RVERLIGRLRFNEGLRFE 351 (524)
T ss_dssp HHHHHHTTCCCCTTCEEE
T ss_pred HHHHHHHHHHhCCCeEee
Confidence 999999999988876543
No 8
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=98.55 E-value=2.1e-08 Score=95.21 Aligned_cols=66 Identities=23% Similarity=0.381 Sum_probs=57.1
Q ss_pred Cceeeec-CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHcCC-----CceEEEeechhhHH
Q psy3496 43 PDVVVWP-GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRC-----QPSSIRLMDNAQFK 108 (223)
Q Consensus 43 ~~L~~g~-GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~sgl-----~PsalElmD~~~l~ 108 (223)
-.+++|+ |||||||++++||+|.|+...++.+.|++++++.+++..+.+.+. .|+++|+||...+.
T Consensus 222 ~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~ 293 (534)
T 1w1o_A 222 FDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRPGGGGASFGPMSYVEGSVFV 293 (534)
T ss_dssp HHHHTTCTTCSEEEEEEEEEEEECCSEEEEEEEEESCHHHHHHHHHHHHCBC------CBCSCSEEEEEEEE
T ss_pred HhhhcCCCCCcEEEEEEEEEEEECCcceEEEEEEeCCHHHHHHHHHHHHhcccccccccccchhHhhhhhhc
Confidence 3445555 999999999999999999988999999999999999998888877 68999999987765
No 9
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=97.81 E-value=1.3e-07 Score=85.26 Aligned_cols=37 Identities=8% Similarity=-0.057 Sum_probs=29.9
Q ss_pred eeEEEEEEc-CHHHHHHHHHHHHHHHHHcCCccCCCcc
Q psy3496 173 CVTTLLFEG-DPEDVKKNQAKIYSIALKFGGIPAGETN 209 (223)
Q Consensus 173 ~~~~L~~eG-~~~~v~~~~~~i~~i~~~~G~~~~g~~~ 209 (223)
+..++-++| +.+++.+..+.+.+++++.+++.++.++
T Consensus 272 a~~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 272 AGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp TTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 344555777 7889999999999999999998887654
No 10
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=97.59 E-value=1.6e-05 Score=73.06 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=49.6
Q ss_pred eeeec-CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHH-HHHHHHHHcCCCceEEEeechhhHHH
Q psy3496 45 VVVWP-GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGV-HCLREIAKQRCQPSSIRLMDNAQFKF 109 (223)
Q Consensus 45 L~~g~-GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~-~av~~i~~sgl~PsalElmD~~~l~~ 109 (223)
+++|+ |||||||+++||+.|.|+....... |.++++++ +++.++.. .+.++|++| ..++.
T Consensus 162 ~~~g~~G~lGvit~~~l~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~e~~~-~~~~~ 223 (422)
T 2vfr_A 162 GAVTSLGALGVVTSLTLDLEPAYEMEQHVFT-ELPLAGLDPATFETVMA---AAYSVSLFT-DWRAP 223 (422)
T ss_dssp GTSSCTTTTCEEEEEEEECEECCEEEEEEEE-EECSTTCCHHHHHHHHT---SSSEEEEEE-CSSSS
T ss_pred eEEecCCCCEEEEEEEEEEEecCceEEEEEe-cCCHHHHHHHHHHHHHh---cCCcEEEEe-cCCCc
Confidence 34455 9999999999999999998877765 78999999 99988763 488999999 66554
No 11
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=96.79 E-value=0.00024 Score=60.72 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=32.6
Q ss_pred CcCCceeeec-CceeeEeEEEEEeecCCCceeEEEEEcCCH
Q psy3496 40 KRIPDVVVWP-GTFGVITKVVLKIRPLPKCRKYGSIVFPNF 79 (223)
Q Consensus 40 ~~l~~L~~g~-GTLGIITEatLKL~P~P~~~~t~l~~F~s~ 79 (223)
+|+..+++|+ |||||||+++||++|.|+...+..+.+.++
T Consensus 88 ydl~~~~~Gs~G~lGIVt~~tlrl~p~~~~~~~~~~~~~~~ 128 (219)
T 2yvs_A 88 YDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFLRRPFSGSF 128 (219)
T ss_dssp SCHHHHHTTCTTTTCEEEEEEEECEECSEEEEEEEECCSSC
T ss_pred cchHHHhccCCCceEEEEEEEEEEEECCcccEEEEEecCCH
Confidence 4555666666 999999999999999999888887777653
No 12
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=95.83 E-value=0.013 Score=54.35 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=33.8
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCC--HH--HHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPN--FE--AGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s--~~--~A~~av~~i~~ 91 (223)
|++||||+++||++|.|+......+.|+. .+ ++++++.++..
T Consensus 190 g~~GiVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (459)
T 2bvf_A 190 PNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALN 235 (459)
T ss_dssp GGTCEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEEEEEECCCcEEEEEEEechHHhhHHHHHHHHHHHHH
Confidence 99999999999999998777777777765 55 66777777664
No 13
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=95.77 E-value=0.0072 Score=56.65 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=31.9
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
|+|||||++++|++|.|+........++..+.+.+++....
T Consensus 210 g~fGvvt~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 250 (500)
T 3tsh_A 210 ESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQ 250 (500)
T ss_dssp STTCEEEEEEEECEECCSCEEEEEEEEETTTTHHHHHHHHH
T ss_pred cceEEEEEEEEEEEeCCCeEEEEEEecCcHHHHHHHHHHHH
Confidence 79999999999999999987766666666566666655543
No 14
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=95.73 E-value=0.012 Score=55.56 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=32.3
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcC-CHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFP-NFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~-s~~~A~~av~~i~ 90 (223)
|+|||||+++|||+|.|+......+.|+ +.+++.+++..+.
T Consensus 201 g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~a~~~l~~~~ 242 (495)
T 3fw9_A 201 GVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQ 242 (495)
T ss_dssp TSSCEEEEEEEECEECCSSEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEEEEeCCCeEEEEEEeecCcHHHHHHHHHHHH
Confidence 8999999999999999998777766664 3466666666554
No 15
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=95.07 E-value=0.031 Score=53.32 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=30.8
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcC-CHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFP-NFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~-s~~~A~~av~~i~ 90 (223)
|+|||||+++|||+|.|+......+.++ +.+++.+++.+..
T Consensus 209 g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (518)
T 3vte_A 209 ENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQ 250 (518)
T ss_dssp GGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHH
Confidence 7999999999999999987655555543 4566666666554
No 16
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=94.95 E-value=0.011 Score=55.78 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=30.1
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcC-C---HHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFP-N---FEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~-s---~~~A~~av~~i~~ 91 (223)
|++||||+++||++|.|+......+.|+ + +.++++++.++..
T Consensus 196 g~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (503)
T 1zr6_A 196 GGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQ 241 (503)
T ss_dssp SSSCEEEEEEECCEECCSCEEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEEEEecCceeEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999987666555553 2 3445555555543
No 17
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=94.75 E-value=0.044 Score=51.33 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=29.7
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCC--HH---HHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPN--FE---AGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s--~~---~A~~av~~i~~ 91 (223)
|++||||+++|||+|.|+......+.|+. .+ ++++++.++..
T Consensus 192 g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
T 3rja_A 192 SNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYAR 238 (473)
T ss_dssp GGTCEEEEEEEECEECCSCEEEEEEECCCCSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEEeCCCceEEEEEEecCccHHHHHHHHHHHHHHhh
Confidence 99999999999999999876666555532 33 44455555444
No 18
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=93.68 E-value=0.073 Score=50.07 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=34.7
Q ss_pred CceeeEeEEEEEeecCCCce-eEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCR-KYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~-~t~l~~F~s~~~A~~av~~i~ 90 (223)
|++||||+++||+.|.|+.. ......+++++++++.+.+..
T Consensus 199 G~~GIIt~~tl~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (481)
T 4feh_A 199 GLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSDGS 240 (481)
T ss_dssp TTTCEEEEEEEECEECSCSEEEEEEEECSSHHHHHHHHSSSG
T ss_pred CCceEEEEEEEEEEeCCccEEEEEEEeCCCHHHHHHHHHHHH
Confidence 99999999999999998654 445778999999999987544
No 19
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=90.84 E-value=0.29 Score=46.27 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=23.0
Q ss_pred CceeeEeEEEEEe-----------ecCCCc-eeEEEEEcC
Q psy3496 50 GTFGVITKVVLKI-----------RPLPKC-RKYGSIVFP 77 (223)
Q Consensus 50 GTLGIITEatLKL-----------~P~P~~-~~t~l~~F~ 77 (223)
|+|||||+++||+ +|.|+. .....+.|+
T Consensus 219 g~~GIVt~~~l~l~~~~~~~~~~~~p~~~~~~~~~~~~~~ 258 (523)
T 2wdx_A 219 GNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFD 258 (523)
T ss_dssp SSSSEEEEEEECCSSCCCSCGGGSSCCCCSEEEEEEEECC
T ss_pred CCcEEEEEEEEEeecccCCCcccccCCCcccEEEEEEEec
Confidence 8999999999999 999874 455566675
No 20
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=89.81 E-value=0.12 Score=49.28 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=29.8
Q ss_pred eeecCceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHH
Q psy3496 46 VVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHC 85 (223)
Q Consensus 46 ~~g~GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~a 85 (223)
++|.|+ ||||+++|||.|.|+........++ ++++++.
T Consensus 203 ~~g~G~-giIt~~tl~l~p~~~~~~~~~~~~~-~~~~l~~ 240 (561)
T 2i0k_A 203 LTNLGR-CFLTSVTMQAGPNFRQRCQSYTDIP-WRELFAP 240 (561)
T ss_dssp HSCTTS-SCEEEEEEECEECCEEEEEEECCSC-HHHHTCC
T ss_pred HhcCCC-EEEEEEEEEEEECCceEEEEEEccC-HHHHHHH
Confidence 444588 9999999999999988777766555 7777765
No 21
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=89.61 E-value=0.31 Score=46.03 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=20.6
Q ss_pred CceeeEeEEEEEe-----------ecCCCce-eEEEEEc
Q psy3496 50 GTFGVITKVVLKI-----------RPLPKCR-KYGSIVF 76 (223)
Q Consensus 50 GTLGIITEatLKL-----------~P~P~~~-~t~l~~F 76 (223)
|++||||+++||+ +|.|+.. ....+.|
T Consensus 217 g~fGIVt~~~l~l~~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (521)
T 2ipi_A 217 GNFGIVTRYWFRTPGATGTDPSQLLPKAPTSTLRHIVTW 255 (521)
T ss_dssp SSSCEEEEEEECCSSCCSSCGGGSSCBCCSCEEEEEEEE
T ss_pred CceEEEEEEEEEeecccCCCcccccCCCCceEEEEEEEe
Confidence 8999999999999 9988643 3333444
No 22
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=88.32 E-value=0.5 Score=44.78 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=20.9
Q ss_pred CceeeEeEEEEEe------------ecCCCc-eeEEEEEc
Q psy3496 50 GTFGVITKVVLKI------------RPLPKC-RKYGSIVF 76 (223)
Q Consensus 50 GTLGIITEatLKL------------~P~P~~-~~t~l~~F 76 (223)
|+|||||+++||+ +|.|+. .....+.|
T Consensus 220 g~fGIVt~~~l~l~~~~~~~~~~~~~p~~~~~~~~~~~~~ 259 (530)
T 2y3s_A 220 GNFGVVVRYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVW 259 (530)
T ss_dssp TSSCEEEEEEECCCCSSCCSCGGGSSCCCCSEEEEEEEEE
T ss_pred CCcEEEEEEEEEeecccCccccccccCCCCceEEEEEEEe
Confidence 8999999999999 998763 34444445
No 23
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=84.14 E-value=1.2 Score=42.00 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=20.2
Q ss_pred CceeeEeEEEEEe----------ecCCC-ceeEEEEEcC
Q psy3496 50 GTFGVITKVVLKI----------RPLPK-CRKYGSIVFP 77 (223)
Q Consensus 50 GTLGIITEatLKL----------~P~P~-~~~t~l~~F~ 77 (223)
|+|||||+++||+ +|.|+ ......+.|+
T Consensus 196 g~fGIVt~~~lk~~~~~~~~~~~~p~~~~~v~~~~~~~~ 234 (501)
T 3pop_A 196 GNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFP 234 (501)
T ss_dssp TSSCEEEEEEECCCTTTCBTTTTBCBCCSEEEEEEEEEE
T ss_pred CCcEEEEEEEEEeccccCCChhhcCCCCceEEEEEEEEc
Confidence 8999999999999 77554 3344445554
No 24
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=80.97 E-value=1.1 Score=40.44 Aligned_cols=44 Identities=7% Similarity=-0.157 Sum_probs=30.2
Q ss_pred CceeeEeEEEEEeecCCCceeE---EE---EEcCCHHHHHHHHHHHHHcC
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKY---GS---IVFPNFEAGVHCLREIAKQR 93 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t---~l---~~F~s~~~A~~av~~i~~sg 93 (223)
|++||||++++||.|.|..... +. ...++.++..+++.+++++.
T Consensus 166 ~~~gIVt~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~k 215 (340)
T 1uxy_A 166 QDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTK 215 (340)
T ss_dssp TTTEEEEEEEEEEESSCCCCCCSGGGGGSCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEEEcCCCccCCHHHHhhhccccccHHHHHHHHHHHHHhc
Confidence 5799999999999998633200 00 01346688888888887643
No 25
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=79.10 E-value=1.6 Score=39.68 Aligned_cols=43 Identities=14% Similarity=-0.154 Sum_probs=31.2
Q ss_pred CceeeEeEEEEEeecCCCcee------EEEEEcCCHHHHHHHHHHHHHcC
Q psy3496 50 GTFGVITKVVLKIRPLPKCRK------YGSIVFPNFEAGVHCLREIAKQR 93 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~------t~l~~F~s~~~A~~av~~i~~sg 93 (223)
|++||||+++|||.|.|.... ..+ ..++.++..+++.+++++.
T Consensus 182 g~~gIIt~v~f~L~p~~~~~~~y~~l~~~l-~~~~~~~~~~~v~~~R~~k 230 (357)
T 3i99_A 182 YQKAVVTAVGLKFAKAWQPIIQYGPLKDLS-SDCAIHDVYQRVCATRMEK 230 (357)
T ss_dssp TTTEEEEEEEEEEESSCCCCCCSGGGGGSC-TTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEEEeCCccccchHHHHhhh-ccCCHHHHHHHHHHHHhcC
Confidence 689999999999999874321 001 3467778888888887654
No 26
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=71.85 E-value=1.8 Score=38.63 Aligned_cols=42 Identities=7% Similarity=-0.052 Sum_probs=24.8
Q ss_pred CcCCceeeecCceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 40 KRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 40 ~~l~~L~~g~GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
+++.+++.++ ..||||+++|||.|.|+. ++.+.++.+.++++
T Consensus 191 ~~yR~s~~g~-~~~IIt~~tl~L~p~~~~---------~i~~~~~~~~~~R~ 232 (322)
T 3tx1_A 191 AAYRFSTIAE-KNYIVLDATFSLALEEKN---------LIQAKMDELTAARE 232 (322)
T ss_dssp --CC-CTTTG-GGCEEEEEEEECEECCHH---------HHHHHHHHHHHHHH
T ss_pred cchhhcccCC-CCEEEEEEEEEEEeCCHH---------HHHHHHHHHHHHHh
Confidence 3334444443 137999999999999842 44555555555444
No 27
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=69.18 E-value=1.6 Score=42.01 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=26.8
Q ss_pred eeeecCceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHH
Q psy3496 45 VVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVH 84 (223)
Q Consensus 45 L~~g~GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~ 84 (223)
+..|.|+ ||||+++||++|.|..+..... .-++++.++
T Consensus 198 ~r~G~G~-gIVTevtlrl~P~~~l~~~~~~-~~~~~e~l~ 235 (540)
T 3js8_A 198 LLAHVGR-SLIVEATLQAAPNQRLRCQSWF-NIPYGEMFA 235 (540)
T ss_dssp HHTCTTS-SCEEEEEEEEEECCEEEEEEEC-CSCHHHHTC
T ss_pred HHhcCCC-eEEEEEEEEEEECCceEEEEEe-cCCHHHHHh
Confidence 3455588 5999999999999876544221 247777775
No 28
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=68.60 E-value=2.1 Score=37.25 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=24.9
Q ss_pred eEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHc
Q psy3496 54 VITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQ 92 (223)
Q Consensus 54 IITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~s 92 (223)
|||++++||.|.| ++++++.++++.+++++
T Consensus 161 IVt~~~~~L~~~~---------~~~i~~~~~~v~~~R~~ 190 (268)
T 2gqt_A 161 IVTRVRLKLKERP---------KEEILRRMAEVDRARKG 190 (268)
T ss_dssp EEEEEEECCEECC---------HHHHHHHHHHHHHHTTT
T ss_pred eEEEEEEEEEeCC---------HHHHHHHHHHHHHHHHh
Confidence 9999999999985 56777888888777664
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=56.99 E-value=25 Score=24.55 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=32.9
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.-..+..+++.|.+.++|..|+..+-.
T Consensus 37 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 78 (105)
T 2dnh_A 37 QPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 78 (105)
T ss_dssp TTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred HhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcC
Confidence 567778888876665444567899999999999999987654
No 30
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=56.81 E-value=23 Score=24.80 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=33.6
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.-..+..+.+.|.+.++|..|+..+-.
T Consensus 51 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 92 (107)
T 3ulh_A 51 AEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 92 (107)
T ss_dssp HTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 667888888887766445567899999999999999987653
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.59 E-value=29 Score=24.03 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=32.8
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.-..+..+++.|.+.++|..|+..+-.
T Consensus 39 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 80 (100)
T 2do4_A 39 KAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG 80 (100)
T ss_dssp TTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC
Confidence 667788888876665335567899999999999999987653
No 32
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=53.86 E-value=24 Score=24.06 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=32.8
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.-..+..+.+.|.+.++|..|+..+..
T Consensus 38 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 79 (95)
T 2ywk_A 38 LQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG 79 (95)
T ss_dssp GGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT
T ss_pred HhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 567889888776665545567899999999999999887643
No 33
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=51.55 E-value=8.6 Score=37.16 Aligned_cols=47 Identities=49% Similarity=0.888 Sum_probs=41.6
Q ss_pred hhhhhcCceeChhhHHHHHHHhhhhHHHHHhchhhccCcCCceeeec
Q psy3496 3 SLLEATNVSLSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWP 49 (223)
Q Consensus 3 ~~~~~~~~~~~~~g~~r~~r~~~~~~~~l~~lR~~~~~~l~~L~~g~ 49 (223)
.-|++.....+++..+|+++.|+..+.++..+|......+|+.++..
T Consensus 166 ~~l~~~~~~~~~~~~~r~~h~~g~s~~d~~~~~~g~~~~~P~aVV~P 212 (658)
T 4bby_A 166 HELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWP 212 (658)
T ss_dssp HHHHHHTCEEECCHHHHHHTSCCSCHHHHHHHHSSCCSCCCSEEEEC
T ss_pred HHHHHhcccccCchHHHhhhcCCCCHHHHHHHhCCcccCCcCEEEee
Confidence 34566777789999999999999999999999999778899999986
No 34
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.89 E-value=53 Score=23.22 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=33.2
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHc
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQ 92 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~s 92 (223)
...|-|..+.+...+.-..+..+.+.|.+.++|..|+..+-..
T Consensus 47 ~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 47 KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 6677888887766553445678999999999999999876543
No 35
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.87 E-value=36 Score=24.09 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=33.1
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.-..+..+++.|.+.++|..|+..+..
T Consensus 37 ~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 37 SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 567788888876665545567899999999999999987653
No 36
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=49.93 E-value=52 Score=24.37 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=33.4
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHc
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQ 92 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~s 92 (223)
...|-|..+.+...+.-..+..+.+.|.+.++|..|+..+...
T Consensus 117 ~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 117 SSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp GGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred HhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 6677788888755544445668899999999999999887643
No 37
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=48.46 E-value=30 Score=25.89 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=41.9
Q ss_pred CceeeEeEEEEEeecC-----CCceeEEEEEcCCHHHHHHHHHHHHHc--CCCceEEEeechhh
Q psy3496 50 GTFGVITKVVLKIRPL-----PKCRKYGSIVFPNFEAGVHCLREIAKQ--RCQPSSIRLMDNAQ 106 (223)
Q Consensus 50 GTLGIITEatLKL~P~-----P~~~~t~l~~F~s~~~A~~av~~i~~s--gl~PsalElmD~~~ 106 (223)
+..|-|+++.+-.-+. ++.+..+.+.|.+.++|..|+..+-.. +-.+-.+++.+...
T Consensus 47 ~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 47 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 110 (118)
T ss_dssp TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHH
T ss_pred hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHh
Confidence 6788899998755432 234568899999999999999988643 22566777777643
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=47.63 E-value=39 Score=24.52 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=33.8
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+-..+. -..+-.+.+.|.+.++|..|+..+-.
T Consensus 28 ~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng 70 (110)
T 3s8s_A 28 RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL 70 (110)
T ss_dssp TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC
Confidence 5678899988866665 35567889999999999999988764
No 39
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=47.60 E-value=37 Score=24.62 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=39.5
Q ss_pred CceeeEeEEEEEeecC--CCceeEEEEEcCCHHHHHHHHHHHHHcCC--CceEEEeech
Q psy3496 50 GTFGVITKVVLKIRPL--PKCRKYGSIVFPNFEAGVHCLREIAKQRC--QPSSIRLMDN 104 (223)
Q Consensus 50 GTLGIITEatLKL~P~--P~~~~t~l~~F~s~~~A~~av~~i~~sgl--~PsalElmD~ 104 (223)
+-.|-|+++.+-..|. +..+-.+.+.|.+.++|..|+..+-..-+ .+-.+++.+.
T Consensus 35 ~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 35 EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 5678899998754443 34567899999999999999998865322 4556666554
No 40
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=47.43 E-value=32 Score=24.86 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=31.0
Q ss_pred ceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 51 TFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 51 TLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
-.|-|+++.+.-.+....+-.+.+.|.+.++|..|+..+-.
T Consensus 50 ~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 50 KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp HTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred cCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCC
Confidence 35778988774333334577899999999999999987754
No 41
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.26 E-value=50 Score=22.34 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=31.5
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...|-|..+.+...+.. ..+..+.+.|.+.++|..|+..+.
T Consensus 37 ~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 37 SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 45677888877665543 456688999999999999998764
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.01 E-value=50 Score=22.88 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=31.7
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+... .-..+..+++.|.+.++|..|+..+..
T Consensus 37 ~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2d9p_A 37 SPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNG 77 (103)
T ss_dssp TTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCC
Confidence 56777888877554 335567899999999999999987654
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=44.94 E-value=64 Score=22.74 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=30.8
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...|-|.++.+-..+. -..+..+.+.|.+.++|..|+..+-
T Consensus 41 ~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 41 SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 6677788877754443 2445688999999999999998764
No 44
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=44.26 E-value=40 Score=24.71 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=32.8
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+....+..+.+.|.+.++|..|+..+..
T Consensus 22 ~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 63 (166)
T 3md3_A 22 QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNG 63 (166)
T ss_dssp GGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 345678888886666556677899999999999999987654
No 45
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.30 E-value=44 Score=23.18 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=31.4
Q ss_pred Cc-eeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GT-FGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GT-LGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
.. .|-|.++.+-..+.-..+..+.+.|.+.++|..|+..+..
T Consensus 31 ~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 73 (104)
T 2dhg_A 31 VKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 73 (104)
T ss_dssp HHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTT
T ss_pred HHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccC
Confidence 44 7778888776555334567889999999999999886543
No 46
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=41.97 E-value=65 Score=21.30 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=31.1
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+. ...+..+.+.|.+.++|..|+..+..
T Consensus 28 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 70 (87)
T 3bs9_A 28 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 70 (87)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 4567788887755542 34566889999999999999987643
No 47
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=40.73 E-value=68 Score=21.01 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=31.1
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...|-|.++.+...+. ...+..+.+.|.+.++|..|+..+-
T Consensus 23 ~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 23 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc
Confidence 4567788887765543 3446788999999999999998764
No 48
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=40.50 E-value=66 Score=22.29 Aligned_cols=42 Identities=10% Similarity=0.291 Sum_probs=32.6
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+. -..+..+.+.|.+.++|..|+..+..
T Consensus 45 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 87 (106)
T 1p27_B 45 AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 87 (106)
T ss_dssp GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC
Confidence 6778888888765554 34567889999999999999987654
No 49
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=37.94 E-value=28 Score=25.29 Aligned_cols=58 Identities=5% Similarity=0.059 Sum_probs=39.7
Q ss_pred CceeeEeEEEEEeecC---CCceeEEEEEcCCHHHHHHHHHHHHHc--CCCceEEEeechhhH
Q psy3496 50 GTFGVITKVVLKIRPL---PKCRKYGSIVFPNFEAGVHCLREIAKQ--RCQPSSIRLMDNAQF 107 (223)
Q Consensus 50 GTLGIITEatLKL~P~---P~~~~t~l~~F~s~~~A~~av~~i~~s--gl~PsalElmD~~~l 107 (223)
+..|-|+++.+-.-+. ++.+-.+.+.|.+.++|..|+..+-.. +-.+-.+++.|...-
T Consensus 37 ~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 37 SKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp HTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHH
T ss_pred HccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHH
Confidence 3567888886622111 134568899999999999999988643 225677788776543
No 50
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.52 E-value=52 Score=22.78 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=30.4
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+. ..+..+++.|.+.++|..|+..+..
T Consensus 37 ~~~G~v~~v~i~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cq3_A 37 GQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHG 77 (103)
T ss_dssp GGTSCEEEEEEECCTT-TTCCEEEEEESCHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEecCC-CCcEEEEEEECCHHHHHHHHHHhCC
Confidence 5567788877654433 2466899999999999999987643
No 51
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=37.45 E-value=56 Score=23.16 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=32.2
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+. -..+.++++.|.+.++|..|+..+-.
T Consensus 47 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 89 (115)
T 2cpz_A 47 MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 89 (115)
T ss_dssp GGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC
Confidence 5677788887766553 34556889999999999999987643
No 52
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=36.16 E-value=83 Score=21.05 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=29.7
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
..+|-|..+.+.. ..-..+..+++.|.+.++|..|+..+..
T Consensus 30 ~~~G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g 70 (92)
T 2dgv_A 30 NECGHVLYADIKM-ENGKSKGCGVVKFESPEVAERACRMMNG 70 (92)
T ss_dssp HTTSCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 4467788777653 2223567889999999999999887653
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=34.86 E-value=70 Score=22.59 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=31.0
Q ss_pred CceeeEeEEEEEeec-CCCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRP-LPKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P-~P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
..+|-|..+.+...+ ....+..+++.|.+.++|..|+..+-
T Consensus 37 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 37 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 566778887775554 23456689999999999999988654
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.60 E-value=66 Score=21.75 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=30.3
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+. -..+..+++.|.+.++|..|+..+..
T Consensus 27 ~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (95)
T 2dnz_A 27 EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG 69 (95)
T ss_dssp TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT
T ss_pred HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC
Confidence 4556788877654443 23455889999999999999987654
No 55
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=32.84 E-value=78 Score=23.33 Aligned_cols=41 Identities=7% Similarity=0.160 Sum_probs=32.5
Q ss_pred ceeeEeEEEEEeecCC---CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 51 TFGVITKVVLKIRPLP---KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 51 TLGIITEatLKL~P~P---~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
..|-|.++.+...+.- ..+..+.+.|.+.++|..|+..+..
T Consensus 26 ~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 69 (175)
T 3nmr_A 26 QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN 69 (175)
T ss_dssp TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 4567888877666544 5677899999999999999987754
No 56
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.78 E-value=89 Score=21.52 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=31.4
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...|-|..+.+...+. -..+..+++.|.+.++|..|+..+.
T Consensus 37 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (103)
T 2cq0_A 37 RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78 (103)
T ss_dssp TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred HhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC
Confidence 5677888888765543 3456688999999999999988654
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.39 E-value=54 Score=23.01 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=29.8
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.++. ....+..+++.|.+.++|..|+..+..
T Consensus 44 ~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g 83 (109)
T 1x4a_A 44 YKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDG 83 (109)
T ss_dssp GGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 5677888887733 223456888999999999999987643
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.20 E-value=68 Score=21.86 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=30.5
Q ss_pred CceeeEeEEEEEeecCC----CceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP----KCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~P----~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...|-|.++.+...+.. ..+..+++.|.+.++|..|+..+-
T Consensus 27 ~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~ 71 (98)
T 2cpf_A 27 SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred HhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC
Confidence 34567888877665541 346788999999999999988654
No 59
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=32.08 E-value=24 Score=23.57 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=27.2
Q ss_pred ceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 51 TFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 51 TLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
..|-|.++.+. ...-..+..+.+.|.+.++|..|+..+-
T Consensus 30 ~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 30 KFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp TTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSS
T ss_pred hcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhc
Confidence 45778887653 1112345688999999999999987543
No 60
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.95 E-value=88 Score=22.16 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=29.7
Q ss_pred CceeeEeEEEEEeecCC----CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP----KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P----~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.. ..+-.+.+.|.+.++|..|+..+-.
T Consensus 40 ~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng 85 (111)
T 2cpi_A 40 GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN 85 (111)
T ss_dssp TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC
Confidence 45677888877332211 2346899999999999999987653
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=31.59 E-value=41 Score=24.43 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=30.8
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...|-|+.+.+...+.-..+..+++.|.+.++|..|+..+-
T Consensus 29 ~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~ 69 (116)
T 2fy1_A 29 GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 (116)
T ss_dssp HTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCS
T ss_pred HhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 45667888777655533456789999999999999988654
No 62
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=31.54 E-value=1.1e+02 Score=24.95 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=41.3
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHc------CCCceEEEeech
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQ------RCQPSSIRLMDN 104 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~s------gl~PsalElmD~ 104 (223)
+..|-|..+.+-..+.-..+..+++.|.+.++|..|+..+... ...|..+++.+.
T Consensus 118 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 118 SQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp GGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred HhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 7788999988866654455778999999999999999987431 135667776654
No 63
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=31.16 E-value=1.2e+02 Score=21.49 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=32.2
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.. ..+..+++.|.+.++|..|+..+-.
T Consensus 48 ~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g 90 (108)
T 2jrs_A 48 EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 90 (108)
T ss_dssp TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 66778888887665543 3456889999999999999887653
No 64
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.12 E-value=1.1e+02 Score=20.16 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=31.3
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHHc
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAKQ 92 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~s 92 (223)
...|-|..+.+...+.. ..+..+.+.|.+.++|..|+..+-..
T Consensus 27 ~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (85)
T 1x4e_A 27 QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS 70 (85)
T ss_dssp TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred HhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC
Confidence 45677888776554432 33568899999999999999877654
No 65
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=31.06 E-value=38 Score=25.19 Aligned_cols=54 Identities=6% Similarity=0.092 Sum_probs=38.9
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHc--CCCceEEEeechhh
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQ--RCQPSSIRLMDNAQ 106 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~s--gl~PsalElmD~~~ 106 (223)
+-.|-|+++.+ +.+..+-.+.+.|.+.++|..|+..+-.. +-.+-.+++.+...
T Consensus 39 ~kfG~V~~v~i---~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 39 NKHGGVIHIYV---DKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPT 94 (114)
T ss_dssp TTTTCCSEEEE---CTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHH
T ss_pred hccCCEEEEEE---ecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHH
Confidence 45677888765 44444678899999999999999988643 22566777776543
No 66
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=30.03 E-value=97 Score=22.15 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=30.2
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|..+.+-..+. ..+..+.+.|.+.++|..|+..+-.
T Consensus 27 ~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~ 67 (115)
T 4f25_A 27 SAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNG 67 (115)
T ss_dssp GGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred hccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCC
Confidence 5677788777644332 2456889999999999999987654
No 67
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.01 E-value=65 Score=21.71 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=27.2
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+. +..+++.|.+.++|..|+..+-.
T Consensus 30 ~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g 64 (90)
T 2dnq_A 30 EQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHH 64 (90)
T ss_dssp HTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred HhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcC
Confidence 456778887775 45788999999999999987643
No 68
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.55 E-value=42 Score=23.06 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=29.4
Q ss_pred CceeeEeEEEEEeec-CCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRP-LPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P-~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+ ....+..+++.|.+.++|..|+..+-.
T Consensus 30 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 72 (99)
T 1whw_A 30 SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 72 (99)
T ss_dssp HTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT
T ss_pred HhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC
Confidence 345677776654443 223456899999999999999876543
No 69
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.54 E-value=49 Score=22.88 Aligned_cols=39 Identities=10% Similarity=0.241 Sum_probs=27.7
Q ss_pred ceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 51 TFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 51 TLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
..|-|.++.+...+ ..+..+.+.|.+.++|..|+..+-.
T Consensus 36 ~~G~v~~v~i~~~~--~~rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 36 RHGKVKSVELSPHT--DYQLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp HHSCEEEEEECSCC--STTCCEEEEESSHHHHHHHHHHHTT
T ss_pred ccCcEEEEEEEeCC--CCCeEEEEEECCHHHHHHHHHHhCC
Confidence 35667776653333 2256789999999999999987653
No 70
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=29.26 E-value=1.1e+02 Score=22.22 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=31.7
Q ss_pred CceeeEeEEEEEeec-CCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRP-LPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P-~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+ ....+..+.+.|.+.++|..|+..+..
T Consensus 24 ~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 66 (167)
T 1fxl_A 24 GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 66 (167)
T ss_dssp HTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC
Confidence 445678887776655 335567889999999999999987654
No 71
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=29.00 E-value=1.7e+02 Score=21.32 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=32.1
Q ss_pred CceeeEeEEEEEeec-CCCceeEEEEEcCCHHHHHHHHHHHHHc
Q psy3496 50 GTFGVITKVVLKIRP-LPKCRKYGSIVFPNFEAGVHCLREIAKQ 92 (223)
Q Consensus 50 GTLGIITEatLKL~P-~P~~~~t~l~~F~s~~~A~~av~~i~~s 92 (223)
...|-|..+.+--.+ .-..+..+.+.|.+.++|..|+..+...
T Consensus 111 ~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 111 GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 777888887764443 2234568899999999999999987653
No 72
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=29.00 E-value=45 Score=23.40 Aligned_cols=42 Identities=7% Similarity=0.127 Sum_probs=31.0
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
+..|-|.++.+-.-+. -..+-.+.+.|.+.++|..|+..+-.
T Consensus 34 ~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 34 SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3467788777655544 23456889999999999999987654
No 73
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=28.95 E-value=60 Score=23.41 Aligned_cols=42 Identities=10% Similarity=0.227 Sum_probs=31.3
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.-..+..+++.|.+.++|..|+..+..
T Consensus 57 ~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 98 (124)
T 2kt5_A 57 AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG 98 (124)
T ss_dssp HTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC
Confidence 456677777775555334566899999999999999987654
No 74
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=28.78 E-value=81 Score=23.05 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=32.1
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
..+|-|.++.+...+.. ..+..+++.|.+.++|..|+..+-.
T Consensus 64 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 106 (139)
T 1u6f_A 64 ERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG 106 (139)
T ss_dssp HHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 56777888887666543 3466889999999999999887543
No 75
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.43 E-value=43 Score=23.99 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=28.9
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
+..|-|+++.+ +.+..+-.+.+.|.+.++|..|+..+-.
T Consensus 48 ~~~G~v~~v~i---~~~~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 48 SKFGQIRKLLL---FDRHPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp GGTSCCSEEEE---ETTCTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred HccCCEeEEEE---ecCCCCEEEEEEECCHHHHHHHHHHcCC
Confidence 34577888855 3334567889999999999999987643
No 76
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.38 E-value=78 Score=22.60 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=30.6
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLR 87 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~ 87 (223)
...|-|+.+.+...+.-..+-.+.+.|.+.++|..|+.
T Consensus 33 ~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 33 EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp HTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred hhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 56788999888766554566789999999999999886
No 77
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.35 E-value=86 Score=21.60 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=30.0
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+ ...+..+++.|.+.++|..|+..+-.
T Consensus 37 ~~~G~i~~v~i~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cqi_A 37 SQIGPCKSCKMITEH-TSNDPYCFVEFYEHRDAAAALAAMNG 77 (103)
T ss_dssp HHHSCEEEEEEECCC-CSSCCEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCEeEEEEEecC-CCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 556778877765442 23456889999999999999987653
No 78
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.34 E-value=56 Score=22.50 Aligned_cols=42 Identities=19% Similarity=0.416 Sum_probs=29.3
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
..+|-|.++.+...+.. ..+..+++.|.+.++|..|+..+..
T Consensus 34 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 1x5s_A 34 SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 76 (102)
T ss_dssp HHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 34566777766433322 2455899999999999999987654
No 79
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=28.12 E-value=2e+02 Score=22.72 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=42.8
Q ss_pred CceeeEeEEEEEeecCC-----CceeEEEEEcCCHHHHHHHHHHHHHcC--CCceEEEeechhhH
Q psy3496 50 GTFGVITKVVLKIRPLP-----KCRKYGSIVFPNFEAGVHCLREIAKQR--CQPSSIRLMDNAQF 107 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-----~~~~t~l~~F~s~~~A~~av~~i~~sg--l~PsalElmD~~~l 107 (223)
+..|-|.++.+---+.. ..+-.+.+-|.+.++|..|+..+...- =.+-.++++|...-
T Consensus 151 ~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 151 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 215 (222)
T ss_dssp TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHH
T ss_pred HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHh
Confidence 77888998877332222 456688899999999999999987542 26778888886543
No 80
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=28.00 E-value=96 Score=23.23 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=31.5
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
..+|-|..+.+-..+. -..+..+++.|.+.++|..|+..+-
T Consensus 61 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 61 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 6777888877755543 2356688999999999999998764
No 81
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=27.88 E-value=57 Score=23.93 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=29.9
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHc
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQ 92 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~s 92 (223)
...|-|+.+.+ . +.+..+++-|++.++|..|+..+...
T Consensus 43 ~~fG~V~~v~i--~---~~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 43 QEFGPISYVVV--M---PKKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp GGGSCEEEEEE--E---TTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred hccCCEEEEEE--E---cCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 66788888765 2 23568899999999999999987654
No 82
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.48 E-value=47 Score=22.87 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=27.9
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|..+.+ +..+..+.+.|.+.++|..|+..+..
T Consensus 35 ~~~G~i~~v~i-----~~~~g~afV~f~~~~~a~~Ai~~l~g 71 (97)
T 1x5p_A 35 SPFGNIIDLSM-----DPPRNCAFVTYEKMESADQAVAELNG 71 (97)
T ss_dssp TTTSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHTTT
T ss_pred hhCCCEEEEEe-----cCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 55677888776 24455788999999999999887543
No 83
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.47 E-value=47 Score=22.50 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=29.4
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...|-|.++.+...+. ...+..+.+.|.+.++|..|+..+-
T Consensus 38 ~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 38 SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC
Confidence 5667788877644433 2334578899999999999987654
No 84
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.78 E-value=66 Score=23.34 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=28.7
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHc
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQ 92 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~s 92 (223)
.-.|-|+++.+ .+ .+..+++-|++.++|.+|+..+...
T Consensus 38 ~~fG~V~~v~i--~~---~kg~aFVef~~~~~A~~Ai~~l~~~ 75 (102)
T 1x4d_A 38 EPFGVISNHLI--LN---KINEAFIEMATTEDAQAAVDYYTTT 75 (102)
T ss_dssp GGGSCEEEEEE--CS---SSSCEEEEESSHHHHHHHHHHHHHS
T ss_pred HhcCCEEEEEE--Ec---CCCEEEEEECCHHHHHHHHHHHcCC
Confidence 45677888876 22 2356889999999999999987643
No 85
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=26.72 E-value=92 Score=25.46 Aligned_cols=42 Identities=7% Similarity=0.012 Sum_probs=34.0
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|+.+.+...+.-..+..+.+.|.+.++|..|+..+..
T Consensus 207 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 207 SAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred hCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 677889998876655555677899999999999999987754
No 86
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.70 E-value=1.3e+02 Score=20.57 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=29.3
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLR 87 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~ 87 (223)
...|-|..+.+...+. -..+..+++.|.+.++|..|+.
T Consensus 37 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 37 STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 5677788887766554 3446688999999999999886
No 87
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.34 E-value=64 Score=22.33 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=28.8
Q ss_pred CceeeEeEEEEEeec--CCCceeEEEEEcCCHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRP--LPKCRKYGSIVFPNFEAGVHCLREI 89 (223)
Q Consensus 50 GTLGIITEatLKL~P--~P~~~~t~l~~F~s~~~A~~av~~i 89 (223)
...|-|.++.+...+ .-..+..+++.|.+.++|..|+..+
T Consensus 37 ~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 37 STFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp HTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred HccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 456678777664331 1234568899999999999999876
No 88
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=25.94 E-value=74 Score=20.93 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=29.8
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|..+.+...+.. ..+..+.+.|.+.++|..|+..+..
T Consensus 29 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 71 (85)
T 3mdf_A 29 IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 71 (85)
T ss_dssp GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred hccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC
Confidence 45677887766444332 3455889999999999999986643
No 89
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=25.75 E-value=57 Score=21.61 Aligned_cols=42 Identities=17% Similarity=0.392 Sum_probs=29.5
Q ss_pred CceeeEeEEEEEeecCC-C-ceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-K-CRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~-~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
+..|-|.++.+...+.. . .+..+.+.|.+.++|..|+..+-.
T Consensus 26 ~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (88)
T 4a8x_A 26 STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 69 (88)
T ss_dssp HTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred HhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC
Confidence 45677777665444321 1 456889999999999999987643
No 90
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=25.28 E-value=65 Score=22.16 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=27.7
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...|-|.++.+. ..+..+.+.|.+.++|..|+..+.
T Consensus 49 ~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~ 84 (101)
T 2la4_A 49 QNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALA 84 (101)
T ss_dssp HTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred HhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhC
Confidence 556778777664 345688899999999999998654
No 91
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=25.05 E-value=1.2e+02 Score=22.48 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=31.5
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|..+.+..-+.. ..+..+++.|.+.++|..|+..+-.
T Consensus 68 ~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng 110 (129)
T 2kxn_B 68 SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 110 (129)
T ss_dssp TTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 67788888777544432 4456889999999999999987643
No 92
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=24.36 E-value=70 Score=21.59 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=30.2
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|.|.++.+...+.. ..+..+.+.|.+.++|..|+..+..
T Consensus 37 ~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 79 (95)
T 2ek1_A 37 YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND 79 (95)
T ss_dssp TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC
Confidence 55667776665544432 4567889999999999999987653
No 93
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=24.20 E-value=1.6e+02 Score=20.07 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=29.7
Q ss_pred CceeeEeE--------EEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITK--------VVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITE--------atLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|.|.+ +.+...+. -..+..+.+.|.+.++|..|+..+-.
T Consensus 35 ~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 35 KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp TTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred HHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 56677877 55443332 24466889999999999999887653
No 94
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=23.95 E-value=1.6e+02 Score=21.21 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=31.4
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+-..+. -..+..+.+.|.+.++|..|+..+-.
T Consensus 110 ~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 110 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 6778888877644432 23466889999999999999987754
No 95
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=23.83 E-value=74 Score=22.43 Aligned_cols=40 Identities=15% Similarity=0.364 Sum_probs=30.1
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+.. .+..+..+.+.|.+.++|..|+..+..
T Consensus 30 ~~~G~v~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g 69 (115)
T 3lqv_A 30 GKYGPIRQIRVGN--TPETRGTAYVVYEDIFDAKNAVDHLSG 69 (115)
T ss_dssp HTTSCEEEEEEEC--STTTTTCEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEee--CCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 4567788776643 344467888999999999999987654
No 96
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=23.46 E-value=1.6e+02 Score=21.22 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=32.5
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|..+.+-..+.. ..+..+.+.|.+.++|..|+..+-.
T Consensus 109 ~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 109 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 77888998877655433 4455889999999999999987643
No 97
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=23.32 E-value=85 Score=21.38 Aligned_cols=42 Identities=17% Similarity=0.416 Sum_probs=29.2
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+. -..+..+.+.|.+.++|..|+..+-.
T Consensus 24 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 66 (96)
T 2x1f_A 24 SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG 66 (96)
T ss_dssp HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3456677766543332 23466889999999999999987653
No 98
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=23.05 E-value=1.5e+02 Score=19.58 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=29.1
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLR 87 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~ 87 (223)
...|-|.++.+...+. -..+..+.+.|.+.++|..|+.
T Consensus 33 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 33 TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH
T ss_pred HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH
Confidence 5678888888765554 3446688999999999988874
No 99
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.96 E-value=42 Score=23.29 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=30.6
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+. ...+..+++.|.+.++|..|+..+-.
T Consensus 35 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2dnm_A 35 EKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77 (103)
T ss_dssp TTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS
T ss_pred HhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC
Confidence 5567788776654443 34456889999999999999887643
No 100
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=22.81 E-value=96 Score=21.39 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=29.9
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHHHc
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIAKQ 92 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~~s 92 (223)
...|-|.++.+...+. -..+..+++.|.+.++|..|+..+...
T Consensus 35 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (106)
T 2dgp_A 35 EEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ 78 (106)
T ss_dssp HHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT
T ss_pred HhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 4456677775533322 234568999999999999999877643
No 101
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.76 E-value=53 Score=22.87 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=27.6
Q ss_pred CceeeEeEEEEEeecC--CCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL--PKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~--P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...| |.++.+...+. -..+..+.+.|.+.++|..|+ .+-
T Consensus 37 ~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 77 (104)
T 1wi8_A 37 RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN 77 (104)
T ss_dssp TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG
T ss_pred HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC
Confidence 5678 88776644433 233568899999999999998 543
No 102
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.56 E-value=58 Score=24.25 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=29.6
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHHc
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQ 92 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~s 92 (223)
...|-|+++.+- ..+..+++-|.+.++|..|+..+...
T Consensus 48 ~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~ 85 (112)
T 1x4f_A 48 EPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKK 85 (112)
T ss_dssp TTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHS
T ss_pred HhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccC
Confidence 566778888762 23578999999999999999987643
No 103
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=22.41 E-value=92 Score=21.61 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=27.4
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
+..|-|.++.+. +..+++.|.+.++|..|+..+-
T Consensus 45 ~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~ 78 (97)
T 2xnq_A 45 SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXES 78 (97)
T ss_dssp GGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHT
T ss_pred HhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcC
Confidence 567778888772 5688899999999999998764
No 104
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.13 E-value=61 Score=24.32 Aligned_cols=37 Identities=11% Similarity=0.282 Sum_probs=28.5
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
+-.|-|+.+.+ |..+.+..+.|.+.++|.+|+.++..
T Consensus 49 ~~fG~v~~v~i-----~~~rgfaFV~f~~~~~A~~Ai~~lnG 85 (114)
T 2cq2_A 49 EKCGLVDALLM-----PPNKPYSFARYRTTEESKRAYVTLNG 85 (114)
T ss_dssp HHHSCEEEEEC-----CTTCSCEEEEESSHHHHHHHHHHTTT
T ss_pred HhcCCeEEEEE-----eCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 56677887654 23467899999999999999987654
No 105
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=21.77 E-value=70 Score=22.98 Aligned_cols=42 Identities=10% Similarity=0.305 Sum_probs=30.6
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.. ..+..+++.|.+.++|..|+..+-.
T Consensus 44 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 86 (126)
T 3ex7_B 44 AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 86 (126)
T ss_dssp HTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 55677887766544432 3356889999999999999987654
No 106
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=21.62 E-value=1.8e+02 Score=22.15 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=32.6
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|+.+.+-..+.. ..+..+++.|.+.++|..|+..+-.
T Consensus 147 ~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 189 (216)
T 2qfj_A 147 EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL 189 (216)
T ss_dssp TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred hccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC
Confidence 77888998877555432 3466889999999999999987754
No 107
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=21.46 E-value=1.8e+02 Score=21.98 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=33.0
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|..+.+...+.. ..+.++++.|.+.++|..|+..+-.
T Consensus 94 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 94 CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136 (165)
T ss_dssp GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC
Confidence 77888998888665533 4467889999999999999987643
No 108
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.40 E-value=1.1e+02 Score=20.97 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=30.9
Q ss_pred CceeeEeEEEEEeecCC-CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP-KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P-~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+...+.. ..+..+.+.|.+.++|..|+..+-.
T Consensus 30 ~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 72 (104)
T 1p1t_A 30 SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 72 (104)
T ss_dssp HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS
T ss_pred HhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45567888777655433 3466889999999999999986543
No 109
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=20.71 E-value=1e+02 Score=21.12 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=27.5
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+. +..+.+.|.+.++|..|+..+-.
T Consensus 33 ~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g 67 (96)
T 2kvi_A 33 SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQ 67 (96)
T ss_dssp TTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTC
T ss_pred HhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCC
Confidence 456778887773 46888999999999999987643
No 110
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=20.69 E-value=1.4e+02 Score=21.92 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=31.4
Q ss_pred CceeeEeEEEEEeec-CCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRP-LPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P-~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|..+.+...+ ....+..+.+.|.+.++|..|+..+..
T Consensus 116 ~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (172)
T 2g4b_A 116 TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 158 (172)
T ss_dssp HTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT
T ss_pred HhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 566778887775554 234466889999999999999987643
No 111
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=20.56 E-value=55 Score=23.23 Aligned_cols=42 Identities=5% Similarity=0.115 Sum_probs=31.1
Q ss_pred CceeeEeEEEEEeecCC---CceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLP---KCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P---~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|+...+|+..-| ..+-.+.+.|.+.++|.+|+..+..
T Consensus 31 ~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 31 SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC
Confidence 56676655566776554 3355899999999999999988754
No 112
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.38 E-value=62 Score=22.39 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=28.7
Q ss_pred CceeeEeEEEEEeecC-CCceeEEEEEcCCHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPL-PKCRKYGSIVFPNFEAGVHCLREIA 90 (223)
Q Consensus 50 GTLGIITEatLKL~P~-P~~~~t~l~~F~s~~~A~~av~~i~ 90 (223)
...|-|.++.+...+. ...+-.+.+.|.+.++|..|+..+-
T Consensus 37 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 37 LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp HTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred HhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence 4556787776544332 2345588999999999999987654
No 113
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=20.34 E-value=95 Score=22.09 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=28.6
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+. +..+++.|.+.++|..|+..+..
T Consensus 53 ~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g 87 (108)
T 2jvo_A 53 GPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHG 87 (108)
T ss_dssp TTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTT
T ss_pred HhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCC
Confidence 677788888775 56889999999999999987653
No 114
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=20.25 E-value=61 Score=22.82 Aligned_cols=35 Identities=9% Similarity=0.182 Sum_probs=27.6
Q ss_pred CceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHHHHH
Q psy3496 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAK 91 (223)
Q Consensus 50 GTLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~i~~ 91 (223)
...|-|.++.+ .+..+++.|.+.++|..|+..+-.
T Consensus 50 ~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g 84 (110)
T 1wf1_A 50 SKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENG 84 (110)
T ss_dssp GGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTT
T ss_pred HhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCC
Confidence 55677888877 356888999999999999987643
No 115
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.10 E-value=1.1e+02 Score=22.13 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=26.2
Q ss_pred ceeeEeEEEEEeecCCCceeEEEEEcCCHHHHHHHHHH
Q psy3496 51 TFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLRE 88 (223)
Q Consensus 51 TLGIITEatLKL~P~P~~~~t~l~~F~s~~~A~~av~~ 88 (223)
-.|-|+++.+. ...+-++++.|.+.++|..|+..
T Consensus 40 ~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 40 KYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp TTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHT
T ss_pred hcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHh
Confidence 45668887764 24456888999999999999886
Done!