RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3496
         (223 letters)



>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain.
           This domain has a ferredoxin-like fold.
          Length = 247

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 65  LPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVP 117
           LP+      + FP+FEA    +R + +    P+++ LMD A          + 
Sbjct: 1   LPEAVAVAVVGFPSFEAAAAAVRALRQSGIGPAALELMDKAALDLVLGTLGLG 53


>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production
           and conversion].
          Length = 459

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 50  GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQ----PSSIRLMDN 104
           GT G+IT+  LK+ PLP+ +      FP+ EA                  P+++  MD 
Sbjct: 191 GTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGVIPAALEFMDR 249


>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD.  This protein,
           the glycolate oxidase GlcD subunit, is similar in
           sequence to that of several D-lactate dehydrogenases,
           including that of E. coli. The glycolate oxidase has
           been found to have some D-lactate dehydrogenase activity
           [Energy metabolism, Other].
          Length = 413

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 20  LIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNF 79
           ++R  G+T  +V     TGL      V   GT G++T+  LK+ P P+        F + 
Sbjct: 133 ILRIGGKTAKDVAGYDLTGL-----FVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSI 187

Query: 80  EAGVHCLREIAKQRCQPSSIRLMDN 104
           E  +  + +I      P+ +  +DN
Sbjct: 188 EKAMQAVYDIIAAGIIPAGMEFLDN 212


>gnl|CDD|191698 pfam07202, Tcp10_C, T-complex protein 10 C-terminus.  This family
           represents the C-terminus (approximately 180 residues)
           of eukaryotic T-complex protein 10. The T-complex is
           involved in spermatogenesis in mice.
          Length = 179

 Score = 30.2 bits (68), Expect = 0.60
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 145 VTTLLFEGKRV--GPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIY 194
           V  +  +G RV   P G   +I   S D   V    F GD +    +   IY
Sbjct: 2   VEKVFADGSRVIWFPNGTRKEI---SADGKTVIVTFFNGDIKQTMPDGTVIY 50


>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
          Length = 555

 Score = 30.4 bits (68), Expect = 0.81
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 50  GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
           GT GVIT+V L+++ +P+        FP  +              Q S + L+D  Q + 
Sbjct: 292 GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRA 351

Query: 110 -----GQSLRPVP 117
                G++L   P
Sbjct: 352 INMANGKNLPEAP 364


>gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General
           function prediction only].
          Length = 306

 Score = 29.1 bits (64), Expect = 1.5
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 52  FGVITKVVLKI-RPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKFG 110
           FG + +V L   R   K R +  + F + E+    + E+  +  +   +R+         
Sbjct: 139 FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQP 198

Query: 111 QSLRP 115
           +S   
Sbjct: 199 RSELS 203


>gnl|CDD|236893 PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.
          Length = 352

 Score = 29.0 bits (66), Expect = 1.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 50  GTFGVITKVVLKIRPLPKC 68
           GT GV+ +V LK+ P P+ 
Sbjct: 154 GTLGVLLEVSLKVLPRPRA 172


>gnl|CDD|239423 cd03307, Mta_CmuA_like, MtaA_CmuA_like family. MtaA/CmuA, also
           MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M
           isozymes, are methylcobamide:Coenzyme M
           methyltransferases, which play a role in metabolic
           pathways of methane formation from various substrates,
           such as methylated amines and methanol. Coenzyme M,
           2-mercaptoethylsulfonate or CoM, is methylated during
           methanogenesis in a reaction catalyzed by three
           proteins. A methyltransferase methylates the corrinoid
           cofactor, which is bound to a second polypeptide, a
           corrinoid protein. The methylated corrinoid protein then
           serves as a substrate for MT2-A and related enzymes,
           which methylate CoM.
          Length = 326

 Score = 27.3 bits (61), Expect = 6.9
 Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 21/70 (30%)

Query: 125 DGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVT------TLL 178
             L+ +      G SVDE               V    +I G       +         L
Sbjct: 235 PILEYIAQCGFDGISVDEKV------------DVKTAKEIVG---GRAALIGNVSPSQTL 279

Query: 179 FEGDPEDVKK 188
             G PEDVK 
Sbjct: 280 LNGTPEDVKA 289


>gnl|CDD|236550 PRK09529, PRK09529, bifunctional acetyl-CoA decarbonylase/synthase
           complex subunit alpha/beta; Reviewed.
          Length = 711

 Score = 27.6 bits (62), Expect = 7.2
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)

Query: 197 ALKFGGIPAGETNGMRGY----MLTFVIA 221
           AL FGG+  G+   +  Y    +  FV A
Sbjct: 209 ALIFGGVEPGDYEELLDYTKERVPAFVNA 237


>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.
          Length = 499

 Score = 27.0 bits (60), Expect = 8.2
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 50  GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDN 104
           G  GV+T+V +K+ P P   +     F + E     + +I      P  + +MDN
Sbjct: 215 GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGIIPGGLEMMDN 269


>gnl|CDD|215275 PLN02498, PLN02498, omega-3 fatty acid desaturase.
          Length = 450

 Score = 27.1 bits (60), Expect = 8.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 34 LRHTGLKRIPDVVVWPGTFGVITKV-VLKIRPLPKCRKYGSIVFPNFEAGVHCLRE 88
          L   GL+ +P +   P T G I+K  + K R LP  + Y  + F  F  G  C RE
Sbjct: 6  LSECGLRPLPRIYPRPRT-GFISKNNLSKFRFLPSSKSYKRLPFDLFSRG--CSRE 58


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.143    0.428 

Gapped
Lambda     K      H
   0.267   0.0822    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,534,038
Number of extensions: 1104480
Number of successful extensions: 1019
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1019
Number of HSP's successfully gapped: 16
Length of query: 223
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 130
Effective length of database: 6,812,680
Effective search space: 885648400
Effective search space used: 885648400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.6 bits)