RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3496
(223 letters)
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 141 bits (356), Expect = 4e-39
Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 29/174 (16%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
GT G+IT+ V+K+ +P+ +Y +FP F V L++I P+ IR+ D + +
Sbjct: 299 GTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQL 358
Query: 110 GQSLRPVPGYFGLLLDGLKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSV 169
+ +P G + + Y+ I+ F +C +
Sbjct: 359 SFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVC--LSIIG------------------ 398
Query: 170 DEMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYI 223
FEG + V ++ ++ I K G G + + YI
Sbjct: 399 ---------FEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYI 443
Score = 49.7 bits (119), Expect = 3e-07
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 12 LSTQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKY 71
L R+ G++L ++ +R +K PD++V P + + V ++ + KY
Sbjct: 107 LKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHS----HEEVERL--VQLAHKY 160
Query: 72 GSIVFP-----NFEAGVHCLRE 88
++ P N + +
Sbjct: 161 NVVIIPMGGGSNIVGAIEPVSN 182
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 58.5 bits (142), Expect = 2e-10
Identities = 25/187 (13%), Positives = 42/187 (22%), Gaps = 50/187 (26%)
Query: 36 HTGLKRIPDVVVWP----------------GTFGVITKVVLKIRPLPKCRKYGSIVFPNF 79
TG+ +P W +G+ TK+ + P P K ++F +
Sbjct: 195 RTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDE 254
Query: 80 EA---GVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRMYITKIK 136
V LR + P+S+ + L + +
Sbjct: 255 ADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRA----QYTTEPGHTPDSVIKQ 310
Query: 137 GFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSI 196
M L G E V N + +
Sbjct: 311 MQKDTGMGAWNLYAA---------------------------LYGTQEQVDVNWKIVTDV 343
Query: 197 ALKFGGI 203
K G
Sbjct: 344 FKKLGKG 350
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity;
HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP:
d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A*
1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A*
1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Length = 560
Score = 50.6 bits (121), Expect = 1e-07
Identities = 21/193 (10%), Positives = 44/193 (22%), Gaps = 33/193 (17%)
Query: 13 STQGEDRLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYG 72
+ E ++ Q ++ L G D + G++TK+ + + P P +
Sbjct: 220 PKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSY 279
Query: 73 SIVFPNFEAGVHCLREIAKQRCQ--PSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRM 130
I P + I R ++ + + L
Sbjct: 280 LITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHIL--------------------LDAA 319
Query: 131 YITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQ 190
+ + +S + KI G +
Sbjct: 320 VLGDKRSYS-----------SRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLW 368
Query: 191 AKIYSIALKFGGI 203
I G+
Sbjct: 369 ETIKDAFSAIPGV 381
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 48.7 bits (117), Expect = 4e-07
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRC-QPSSIRLMDNAQFK 108
GT G+IT LK+ P P+ + + + + + L + +S L+
Sbjct: 212 GTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLD 271
Query: 109 F 109
F
Sbjct: 272 F 272
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus
thermophilus}
Length = 219
Score = 36.7 bits (85), Expect = 0.002
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 50 GTFGVITKVVLKIRPLPK---CRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLM 102
G G +VVL++RP R+ S FP L + +
Sbjct: 99 GLLGRAEEVVLRLRPGRAQAFLRRPFSGSFPRLVPTPRFLFALEDEEGPWLYAYHF 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.007
Identities = 36/202 (17%), Positives = 63/202 (31%), Gaps = 73/202 (36%)
Query: 22 RAHGQTLYEVFSLRHTGLKRIPDVVV---------WPGTFGVITKVVLKIRPLPKCRKYG 72
+ G T E+ S +V W +F V + + + L
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE-SFFVSVRKAITV--L------- 303
Query: 73 SIVFPNFEAGVHCLREIAKQRCQP-SSIR---LMDNAQFKFGQSLRPVPGYFGLLLDGLK 128
F GV C P +S+ L D+ + G VP L + L
Sbjct: 304 ------FFIGVRC------YEAYPNTSLPPSILEDSLENNEG-----VPSPM-LSISNLT 345
Query: 129 RMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPED--- 185
+ + V++ + L GK+V I+ + G + V+ G P+
Sbjct: 346 QEQVQDY----VNKTN--SHLPAGKQV----EISLVNGA--KNLVVS-----GPPQSLYG 388
Query: 186 -------VK----KNQAKI-YS 195
K +Q++I +S
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFS 410
Score = 32.7 bits (74), Expect = 0.094
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 37/142 (26%)
Query: 3 SL-----LEATNVSLSTQGED--RLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGV- 54
SL L + +S E ++ G T+ G + + PG
Sbjct: 1763 SLGEYAALASLADVMSI--ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 55 -----ITKVVLKIRPLPKCRKYGSIVFP-NF------------EAGVHCLREIAKQRCQP 96
+ VV ++ ++ G +V N+ + + +
Sbjct: 1821 FSQEALQYVVERV-----GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF---- 1871
Query: 97 SSIRLMDNAQFKFGQSLRPVPG 118
++ +D + + SL V G
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEG 1893
Score = 32.3 bits (73), Expect = 0.14
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 7/25 (28%)
Query: 178 LFEGDPEDVKKNQAKIYSIALKFGG 202
LF V + A++ +I FGG
Sbjct: 145 LFRA----VGEGNAQLVAI---FGG 162
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein,
FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4
d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A*
3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Length = 534
Score = 33.5 bits (76), Expect = 0.054
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIA 90
G FGVIT+ + + P P ++ V+ +F A +
Sbjct: 230 GQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLT 270
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin
oxidase/dehydrogenase, CKX, structura genomics, protein
structure initiative; HET: MSE FAD; 1.70A {Arabidopsis
thaliana} PDB: 2q4w_A*
Length = 524
Score = 31.2 bits (70), Expect = 0.24
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEA 81
G FG+IT+ + ++P P ++ +V+ F+
Sbjct: 223 GQFGIITRARVLLQPAPDMVRWIRVVYTEFDE 254
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex,
glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55;
2.30A {Nonomuraea SP} PDB: 2wdw_A*
Length = 523
Score = 30.3 bits (68), Expect = 0.59
Identities = 14/73 (19%), Positives = 26/73 (35%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
G FGV+TK +++ + P + + + RL+ N +
Sbjct: 219 GNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFDWAGMTEAAFSRLLRNHGEWY 278
Query: 110 GQSLRPVPGYFGL 122
++ P Y GL
Sbjct: 279 ERNSGPDSPYTGL 291
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric
substrates, flavoenzymes, NI degradation; HET: FAD;
1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Length = 459
Score = 29.7 bits (67), Expect = 0.69
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFP 77
FGV+T+V +++ LP+ G I +
Sbjct: 190 PNFGVVTEVEVQLYELPRKMLAGFITWA 217
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 28.6 bits (64), Expect = 1.6
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 126 GLKR-MYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPE 184
GL+R +I + G + + + LL R +G ++ G + VT +
Sbjct: 107 GLQRGHWIMMMNGDYITKKVESELLQGSTRQLQIGVYKEVVGEDGE---VTGGVVPIGET 163
Query: 185 DVKKNQAKI 193
+ +++ +
Sbjct: 164 TMPASRSLV 172
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme,
twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces
galilaeus}
Length = 521
Score = 28.4 bits (63), Expect = 2.2
Identities = 8/57 (14%), Positives = 18/57 (31%)
Query: 50 GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQ 106
G FG++T+ + + H + + + R++DN
Sbjct: 217 GNFGIVTRYWFRTPGATGTDPSQLLPKAPTSTLRHIVTWDWSALTEEAFTRIIDNHG 273
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET:
FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3
d.145.1.1 PDB: 1i19_A*
Length = 561
Score = 27.8 bits (61), Expect = 3.4
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 50 GTFGVITKVVLKIRPLPKCR 69
+T V ++ P + R
Sbjct: 206 LGRCFLTSVTMQAGPNFRQR 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.143 0.428
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,511,484
Number of extensions: 215832
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 19
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.1 bits)