RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3496
         (223 letters)



>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 279

 Score = 49.3 bits (117), Expect = 8e-08
 Identities = 16/137 (11%), Positives = 29/137 (21%), Gaps = 34/137 (24%)

Query: 70  KYGSIVFPN---FEAGVHCLREIAKQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDG 126
           K   ++F +       V  LR +      P+S+ +           L             
Sbjct: 4   KPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQ--------- 54

Query: 127 LKRMYITKIKGFSVDEMCVTTLLFEGKRVGPVGYITKIKGFSVDEMCVTTLLFEGDPEDV 186
                                         P   I +++  +            G  E V
Sbjct: 55  ----------------------YTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQV 92

Query: 187 KKNQAKIYSIALKFGGI 203
             N   +  +  K G  
Sbjct: 93  DVNWKIVTDVFKKLGKG 109


>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus
           (Penicillium simplicissimum) [TaxId: 69488]}
          Length = 287

 Score = 46.4 bits (109), Expect = 9e-07
 Identities = 9/61 (14%), Positives = 19/61 (31%)

Query: 50  GTFGVITKVVLKIRPLPKCRKYGSIVFPNFEAGVHCLREIAKQRCQPSSIRLMDNAQFKF 109
           G       ++  +R     +   +I     +A V   +     R +P S   +D    + 
Sbjct: 14  GDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQL 73

Query: 110 G 110
            
Sbjct: 74  N 74


>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
           (Penicillium simplicissimum) [TaxId: 69488]}
          Length = 268

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 27  TLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLP 66
              ++  L   G     D +      G++TK+ + + P P
Sbjct: 229 PWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNP 268


>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 236

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 19  RLIRAHGQTLYEV--FSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRPLP 66
            + R     +     + +   G     D +     +G+ TK+   + P P
Sbjct: 187 DVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKP 236


>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 206

 Score = 30.7 bits (68), Expect = 0.094
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 50  GTFGVITKVVLKIRP 64
           G FGVIT+  + + P
Sbjct: 191 GQFGVITRARIAVEP 205


>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium
           sterolicum [TaxId: 1702]}
          Length = 216

 Score = 27.7 bits (60), Expect = 0.93
 Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 19  RLIRAHGQTLYEVFSLRHTGLKRIPDVVVWPGTFGVITKVVLKIRP 64
             +  +G T Y + + +    +  P +         +T V ++  P
Sbjct: 173 TAVVWNG-TTYALETYQRNDPRITPLLTN--LGRCFLTSVTMQAGP 215


>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit,
           NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
          Length = 150

 Score = 25.6 bits (55), Expect = 4.1
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 38  GLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFEA 81
            L+ +P      G    I K  L ++ +P+   +   ++  F+A
Sbjct: 109 ELQSVPFEKELYGDA--IKKKCLGLKEVPRIESFHGFIYGCFDA 150


>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha
           subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId:
           92694]}
          Length = 162

 Score = 24.4 bits (52), Expect = 9.0
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 36  HTGLKRIPDVVVWPGTFGVITKVVLKIRPLPKCRKYGSIVFPNFE 80
              L  +P           + K    +RP+P    Y  ++F + +
Sbjct: 118 TGSLVGVPAG--KDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLD 160


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.143    0.428 

Gapped
Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 852,017
Number of extensions: 40714
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 12
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.2 bits)