BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3497
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 237 bits (604), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/151 (74%), Positives = 125/151 (82%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
M+ LPRRIIKETQRL+ EPVPGI A PDESNARYFHV++ GP+DS
Sbjct: 1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 60
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
+YPM+APKVRF+TKIYHPN+D+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
Sbjct: 61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
LANDVAE WK NEA+AI A+ WTR YAM+N
Sbjct: 121 LANDVAEQWKTNEAQAIETARAWTRLYAMNN 151
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 237 bits (604), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/151 (74%), Positives = 125/151 (82%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
M+ LPRRIIKETQRL+ EPVPGI A PDESNARYFHV++ GP+DS
Sbjct: 4 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 63
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
+YPM+APKVRF+TKIYHPN+D+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
Sbjct: 64 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 123
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
LANDVAE WK NEA+AI A+ WTR YAM+N
Sbjct: 124 LANDVAEQWKTNEAQAIETARAWTRLYAMNN 154
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 111/150 (74%), Positives = 124/150 (82%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXD 61
+ LPRRIIKETQRL+ EPVPGI A PDESNARYFHV++ GP+DS +
Sbjct: 4 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 63
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YPM+APKVRF+TKIYHPN+D+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL
Sbjct: 64 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
ANDVAE WK NEA+AI A+ WTR YAM+N
Sbjct: 124 ANDVAEQWKTNEAQAIETARAWTRLYAMNN 153
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 235 bits (599), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 111/150 (74%), Positives = 124/150 (82%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
M+ LPRRIIKETQRL+ EPVPGI A PDESNARYFHV++ GP+DS
Sbjct: 6 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 65
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
+YPM+APKVRF+TKIYHPN+D+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
Sbjct: 66 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 125
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
LANDVAE WK NEA+AI A+ WTR YAM+
Sbjct: 126 LANDVAEQWKTNEAQAIETARAWTRLYAMN 155
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 232 bits (591), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 110/148 (74%), Positives = 122/148 (82%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDY 62
LPRRIIKETQRL+ EPVPGI A PDESNARYFHV++ GP+DS +Y
Sbjct: 1 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 60
Query: 63 PMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
PM+APKVRF+TKIYHPN+D+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA
Sbjct: 61 PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 120
Query: 123 NDVAELWKVNEAEAIRNAKEWTRKYAMD 150
NDVAE WK NEA+AI A+ WTR YAM+
Sbjct: 121 NDVAEQWKTNEAQAIETARAWTRLYAMN 148
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 196 bits (498), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/148 (64%), Positives = 112/148 (75%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
M++LP+RIIKET++L+ +PVPGI+A P + N RYF V + GPE S
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
DYPM APKVRF+TKIYHPNIDRLGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYA 148
LANDVAE W NE A A+EWT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/147 (63%), Positives = 111/147 (75%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXD 61
++LP+RIIKET++L+ +PVPGI+A P + N RYF V + GPE S D
Sbjct: 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YPM APKVRF+TKIYHPNIDRLGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 64 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 123
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYA 148
ANDVAE W NE A A+EWT+ YA
Sbjct: 124 ANDVAEDWIKNEQGAKAKAREWTKLYA 150
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 192 bits (488), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 111/148 (75%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
M++LP+RIIKET++L+ +PVPGI+A P + N RYF V + GPE S
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
DYPM APKVRF+TKIYHPNIDRLGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYA 148
LANDVAE W NE A A+EWT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 110/148 (74%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
M++LP+RIIKET++L+ +PVPGI+A P + N RYF V + GPE S
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
DYPM APKVRF+TKIYHP IDRLGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DP
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYA 148
LANDVAE W NE A A+EWT+ YA
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 176 bits (445), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/149 (57%), Positives = 106/149 (71%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDY 62
+PRRI KETQ L EP PGI AVP N R+F++++ GP+ + Y
Sbjct: 1 GIPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 63 PMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
PM PKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL
Sbjct: 61 PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 123 NDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
+ VAE +K ++ +A A++W + YA +N
Sbjct: 121 SKVAEHFKQDKNDAEHVARQWNKIYANNN 149
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 176 bits (445), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/149 (57%), Positives = 106/149 (71%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDY 62
+PRRI KETQ L EP PGI AVP N R+F++++ GP+ + Y
Sbjct: 1 GIPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 63 PMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
PM PKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL
Sbjct: 61 PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 123 NDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
+ VAE +K ++ +A A++W + YA +N
Sbjct: 121 SKVAEHFKQDKNDAEHVARQWNKIYANNN 149
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 132 bits (332), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 86/143 (60%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GPEDS DYP
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F TKIYHPNI+ G ICLDILKD+WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 84 PPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 143
Query: 126 AELWKVNEAEAIRNAKEWTRKYA 148
A L+K + + A+EW++KYA
Sbjct: 144 AHLYKSDRMRYDQTAREWSQKYA 166
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 87/144 (60%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE Q L ++P SA P + ++ + GP DS DYP
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F TKIYHPNI+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL D+
Sbjct: 69 PPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 128
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K ++ + R A+EWT+KYAM
Sbjct: 129 AHIYKSDKEKYNRLAREWTQKYAM 152
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 88/144 (61%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PK+ F TKIYHPNI+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL D+
Sbjct: 66 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 125
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A+++K ++ + R+A+EWT+KYAM
Sbjct: 126 AQIYKSDKEKYNRHAREWTQKYAM 149
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 88/144 (61%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PK+ F TKIYHPNI+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL D+
Sbjct: 70 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A+++K ++ + R+A+EWT+KYAM
Sbjct: 130 AQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 88/144 (61%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 22 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PK+ F TKIYHPNI+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL D+
Sbjct: 82 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 141
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A+++K ++ + R+A+EWT+KYAM
Sbjct: 142 AQIYKSDKEKYNRHAREWTQKYAM 165
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 89/143 (62%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
RRI KE + + Q+P SA P + ++ +TGP+DS DYP
Sbjct: 7 RRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
AP+V F+TK+YHPNI++ G ICLDILKD+WSPAL + VLLSI +LL+ PNP DPL +V
Sbjct: 67 APRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEV 126
Query: 126 AELWKVNEAEAIRNAKEWTRKYA 148
A + + N+ + A+EWTR YA
Sbjct: 127 ANVLRANKKQFEDTAREWTRMYA 149
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 87/144 (60%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI +E L ++P SA P + ++ + GP DS DYP
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+D+WSPAL I VLLSI +LL+ PNPDDPL ++
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 123
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + +A+EWTRKYA+
Sbjct: 124 AHVYKTDRSRYELSAREWTRKYAI 147
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 69 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 128
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 129 ARIYKTDREKYNRIAREWTQKYAM 152
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 82 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 141
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 142 ARIYKTDREKYNRIAREWTQKYAM 165
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYAM 147
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 125 bits (315), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 84/144 (58%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ GP DS DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAM 149
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 125 bits (315), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 74 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 133
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A +++ + + R A+EWT+KYAM
Sbjct: 134 ARIYQTDREKYNRIAREWTQKYAM 157
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 84/144 (58%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +W PAL I VLLSI +LL PNPDDPL ++
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAM 149
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXD 61
SAL +RI KE L ++P SA P + ++ + GP DS D
Sbjct: 3 SAL-KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL
Sbjct: 62 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAM 149
++A ++K + + R ++EWT+KYAM
Sbjct: 122 VPEIARIYKTDRDKYNRISREWTQKYAM 149
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 125 bits (314), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 74 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 133
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R ++EWT+KYAM
Sbjct: 134 ARIYKTDRDKYNRISREWTQKYAM 157
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 125 bits (314), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 12 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 72 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 131
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R ++EWT+KYAM
Sbjct: 132 ARIYKTDRDKYNRISREWTQKYAM 155
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PK+ F TKIYHPNI+ G ICLDILKD+WSPAL + VLLSI +LL+ NPDDPL ++
Sbjct: 65 PPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEI 124
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + A+EWT+KYA+
Sbjct: 125 AHIYKTDRPKYEATAREWTKKYAV 148
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 63 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 122
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R ++EWT+KYAM
Sbjct: 123 ARIYKTDRDKYNRISREWTQKYAM 146
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 84/144 (58%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLD L+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAM 149
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 86/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P A P + ++ + GP DS DYP
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PK+ F TKIYHPNI+ G I LDIL+ +WSPAL + VLLSI +LL PNPDDPL D+
Sbjct: 70 PPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A+++K ++ + R+A+EWT+KYAM
Sbjct: 130 AQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 67 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + A+EWT+KYAM
Sbjct: 127 ARIYKTDRERYNQLAREWTQKYAM 150
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 85/144 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G I LDIL+ +WSPAL+I VLLSI +LL PNPDDPL ++
Sbjct: 63 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEI 122
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 123 ARIYKTDREKYNRIAREWTQKYAM 146
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 84/144 (58%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 67 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 127 ARIYKTDREKYNRIAREWTQKYAM 150
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 122 bits (306), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 84/144 (58%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 82 PPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 141
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 142 ARIYKTDREKYNRIAREWTQKYAM 165
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 122 bits (306), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 84/144 (58%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 66 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAM 149
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 84/144 (58%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P SA P + ++ + GP DS DYP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R ++EWT+KYAM
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYAM 147
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 119 bits (298), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Query: 7 RIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSA 66
R+ KE + + E V I A +SN + + GPE + DYP +
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 67 PKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PK++F+TKI+HPNI + G ICLD+LK++WSPAL IRT LLSIQALLS P PDDP +V
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146
Query: 126 AELWKVNEAEAIRNAKEWTRKYA 148
A+++K N A ++ A WT+ +A
Sbjct: 147 AKMYKENHALFVKTASVWTKTFA 169
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 79/147 (53%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXD 61
S +RI KE + +P P SA P N + + GP S D
Sbjct: 2 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 61
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP PKV F T+IYH NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL
Sbjct: 62 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 121
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYA 148
+A + N AE R A++WT++YA
Sbjct: 122 VGSIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 82/144 (56%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+RI KE L ++P A P + ++ + GP DS DYP
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHP I+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + R A+EWT+KYAM
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYAM 147
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 80/148 (54%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
+S +RI KE + +P P SA P N + + GP S
Sbjct: 46 LSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTP 105
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
+YP PKV F T+IYH NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DP
Sbjct: 106 EYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 165
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYA 148
L +A + N AE R A++WT++YA
Sbjct: 166 LVGSIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 115 bits (288), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 7 RIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSA 66
R+ +E L EP PGI+ D+ + G ++ YP
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 67 PKVRFITKIYHPNIDRLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
P++RF+T IYHPNID GRICLD+LK W P+L I TVL SIQ L+S PNPDDPL
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLM 127
Query: 123 NDVAELWKVNEAEAIRNAKEWTRKYA 148
D++ +K N+ ++NA++WT K+A
Sbjct: 128 ADISSEFKYNKPAFLKNARQWTEKHA 153
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 80/130 (61%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
RR++++ +RL ++P G+S P E+N ++ ++ GPE + +YP
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
P VRF++K++HPN+ G ICLDIL+++WSP + ++L SIQ+LL PNP+ P +
Sbjct: 67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQA 126
Query: 126 AELWKVNEAE 135
A+L++ N+ E
Sbjct: 127 AQLYQENKRE 136
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 82/137 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+R++++ +RL Q+P GIS P ++N ++ ++ GP+D+ DYP
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
P VRF+++++HPNI G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Query: 126 AELWKVNEAEAIRNAKE 142
A ++ ++ E R ++
Sbjct: 127 ARMYSESKREYNRRVRD 143
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 77/130 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
RR++++ ++L ++P G+S P E N + I+ GP+++ +YP
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 70 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 129
Query: 126 AELWKVNEAE 135
A+L++ N E
Sbjct: 130 AQLYQENRRE 139
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 77/130 (59%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
RR++++ ++L ++P G+S P E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 126 AELWKVNEAE 135
A+L++ N E
Sbjct: 127 AQLYQENRRE 136
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 102 bits (254), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 1/133 (0%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDY 62
++ +R+ +E + L+ PGI+A PD N + + GP+D+ DY
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 63 PMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
P P V+F T +HPN+D+ G ICLDILK+ W+ + +RT+LLS+Q+LL PN PL
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLN 128
Query: 123 NDVAELWKVNEAE 135
A++W N+ E
Sbjct: 129 AQAADMWS-NQTE 140
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 67/125 (53%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+R+ +E LM GISA P+ N + + G + YP +
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
AP V+F+T YHPN+D G I LDILK+KWS +RT+LLSIQ+LL PN D PL
Sbjct: 93 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHA 152
Query: 126 AELWK 130
AELWK
Sbjct: 153 AELWK 157
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 83/141 (58%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
RR++++ +R+ ++ PG+SA P N ++ ++ GP D+ +YP
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
P V+F+++++HPN+ G ICLDIL+++W+P + ++L SIQ+L + PNP P +
Sbjct: 67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEA 126
Query: 126 AELWKVNEAEAIRNAKEWTRK 146
A L+K ++++ ++ KE K
Sbjct: 127 ATLFKDHKSQYVKRVKETVEK 147
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 61 DYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 119
DYP + PK++F+TKI+HPNI + G ICLDILK +WSPAL IRT LLSIQA+L+ P P D
Sbjct: 103 DYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTD 162
Query: 120 PLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
P +VA++ N ++ AK WT +A +
Sbjct: 163 PQDAEVAKMMIENHPLFVQTAKLWTETFAKE 193
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 6 RRIIKETQRLMQEPVPGIS-AVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
+RI+KE Q + +P I+ ES+ + GP + +YP
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 65 SAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 123
PK++F TK+YHPNI + G ICLDILK+ WSP + +++ L+S+QALL +P P+DP
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 124 DVAELWKVNEAEAIRNAKEWTRKYA 148
+VA+ + + + A WTR YA
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Query: 2 SALPRRIIKETQRLMQEPVPGIS-AVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
S+ +RI+KE Q + +P I+ ES+ + GP +
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 61 DYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 119
+YP PK++F TK+YHPNI + G ICLDIL++ WSP + +++ L+S+QALL +P P+D
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 120 PLANDVAELWKVNEAEAIRNAKEWTRKYA 148
P +VA+ + + + A WTR YA
Sbjct: 121 PQDAEVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
R + KE L +P GI P+E + V + GPE + D+P S
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PK F+TKI+HPN+ G IC+++LK W+ L IR VLL+I+ LL PNP+ L +
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 126 AELWKVNEAEAIRNAKEWTRKYA 148
L N E A+ T +
Sbjct: 136 GRLLLENYEEYAARARLLTEIHG 158
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 14/155 (9%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
+R++ E ++L P GI A P +E N + ++ GPED+ DYP+
Sbjct: 12 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 71
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQAL 111
S PK+RF +++HPNI GR+C+ IL ++WSP + +LLS+ ++
Sbjct: 72 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 131
Query: 112 LSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRK 146
L+ PN + D +++W+ + + + AK+ +K
Sbjct: 132 LAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 166
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 14/155 (9%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
+R++ E ++L P GI A P +E N + ++ GPED+ DYP+
Sbjct: 10 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 69
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQAL 111
S PK+RF +++HPNI GR+C+ IL ++WSP + +LLS+ ++
Sbjct: 70 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 129
Query: 112 LSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRK 146
L+ PN + D +++W+ + + + AK+ +K
Sbjct: 130 LAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 164
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 14/155 (9%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
+R++ E ++L P GI A P +E N + ++ GPED+ DYP+
Sbjct: 9 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 68
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQAL 111
S PK+RF +++HPNI GR+C+ IL ++WSP + +LLS+ ++
Sbjct: 69 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 128
Query: 112 LSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRK 146
L+ PN + D +++W+ + + + AK+ +K
Sbjct: 129 LAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 163
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 14/155 (9%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
+R++ E ++L P GI A P +E N + ++ GPED+ DYP+
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQAL 111
S PK+RF +++HPNI GR+C+ IL ++WSP + +LLS+ ++
Sbjct: 66 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 125
Query: 112 LSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRK 146
L+ PN + D +++W+ + + + AK+ +K
Sbjct: 126 LAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXD 61
A RR++KE + + + + + DE+N + ++ P++ +
Sbjct: 4 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAE 62
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDP 120
YP PK+ F TKIYHPNID G++CL ++ + W PA + V+ S+ AL++ P P+ P
Sbjct: 63 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 122
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYA 148
L D+AE + + + +NA+E+T+KY
Sbjct: 123 LRADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
+R++KE Q+L+++ PGI A P E+N + ++ GP D+ DYP+
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 111
S PK+ F I HPNI G +C+ IL +++WSP + +LLS+ ++
Sbjct: 67 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 126
Query: 112 LSAPNPDDPLANDVAELWKVNEAEAIRNAK 141
LS PN + D LW+ N E R K
Sbjct: 127 LSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXD 61
A RR++KE + + + + + DE+N + ++ P++ +
Sbjct: 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAE 60
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDP 120
YP PK+ F TKIYHPNID G++CL ++ + W PA + V+ S+ AL++ P P+ P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYA 148
L D+AE + + + +NA+E+T+KY
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 7 RIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
R++KE + L ++P P + + D++N +H ++ P+ +YP
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
P ++F TKIYHPN+D G+ICL I+ + W P + VL ++ L++ PN +PL D
Sbjct: 67 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 126
Query: 125 VAELWKVNEAEAIRNAKEWTRKYAMD 150
+A+L N +NA+E+T ++ +D
Sbjct: 127 LADLLTQNPELFRKNAEEFTLRFGVD 152
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 7 RIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
R++KE + L ++P P + + D++N +H ++ P+ +YP
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 63
Query: 66 APKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
P ++F TKIYHPN+D G+ICL I+ + W P + VL ++ L++ PN +PL D
Sbjct: 64 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 123
Query: 125 VAELWKVNEAEAIRNAKEWTRKYAMD 150
+A+L N +NA+E+T ++ +D
Sbjct: 124 LADLLTQNPELFRKNAEEFTLRFGVD 149
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 10 KETQRLMQEPVPGISA-VPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPK 68
K+ + + PV G SA + D+++ + V+V GP D+ DYP PK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 69 VRFITKIYHPNIDRLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAP 115
++FI++I+HPNID+ G +C+ IL D +W P + T+LLS+ ++L+ P
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 129
Query: 116 NPDDPLANDVAELWKVNEAEAIRNAKEWTRK 146
N + P D A++ + N AE + + R+
Sbjct: 130 NFESPANVDAAKMQRENYAEFKKKVAQCVRR 160
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 23/161 (14%)
Query: 2 SALPRRIIKETQRLMQEPVPGISA-VPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 60
S L RR + E L + PV G SA + D+++ + V++ GP D+
Sbjct: 19 SLLLRRQLAE---LNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPK 75
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLS 107
DYP+ PK++FIT+I+HPN+D+ G +C+ IL +++W P + T+++S
Sbjct: 76 DYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS 135
Query: 108 IQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
+ ++L+ PN D P D A+ W+ + RN E+ RK A
Sbjct: 136 VISMLADPNGDSPANVDAAKEWRED-----RNG-EFKRKVA 170
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 39 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSP 97
+ GP D+ YP + PKVRFITKI+HPNI + G ICLDILKD+W+
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 119
Query: 98 ALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
A+ +RTVLLS+QALL+A PDDP VA +K N + A+ W YA
Sbjct: 120 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 170
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 39 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSP 97
+ GP D+ YP + PKVRFITKI+HPNI + G ICLDILKD+W+
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 106
Query: 98 ALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
A+ +RTVLLS+QALL+A PDDP VA +K N + A+ W YA
Sbjct: 107 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 157
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 39 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSP 97
+ GP D+ YP + PKVRFITKI+HPNI + G ICLDILKD+W+
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 103
Query: 98 ALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
A+ +RTVLLS+QALL+A PDDP VA +K N + A+ W YA
Sbjct: 104 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 154
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 39 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSP 97
+ GP D+ YP + PKVRFITKI+HPNI + G ICLDILKD+W+
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 104
Query: 98 ALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
A+ +RTVLLS+QALL+A PDDP VA +K N + A+ W YA
Sbjct: 105 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 155
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP+ PKV + KI+HPNID G +CL+IL++ WSPAL +++++ + L PNP+DPL
Sbjct: 92 YPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPL 151
Query: 122 ANDVAELWKVNE---AEAIR 138
D A+L E AEA+R
Sbjct: 152 NKDAAKLLCEGEKEFAEAVR 171
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 39 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSP 97
+ GP D+ YP + PKVRFITKI+HPNI + G ICLDILKD+W+
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 155
Query: 98 ALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
A+ +RTVLLS+QALL+A PDDP VA +K N + A+ W YA
Sbjct: 156 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 206
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%)
Query: 38 IVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSP 97
+V P++ YP PKV+ T +YHPNID G +CL+IL++ W P
Sbjct: 39 LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKP 98
Query: 98 ALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTR 145
L I +++ +Q L PNP+DPL + AE+ + N +N + R
Sbjct: 99 VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXR 146
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 6 RRIIKETQRLMQEPVPGIS-AVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
+ ++ E + L +EPV G + DE + + V + GP ++ DYP
Sbjct: 10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 111
S P RF+TK++HPNI G +C+ IL ++W+P +RT+LLS+ +L
Sbjct: 70 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 129
Query: 112 LSAPNPDDPLANDVAELWK 130
L+ PN P D + +++
Sbjct: 130 LNEPNTFSPANVDASVMYR 148
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 6 RRIIKETQRLMQEPVPGIS-AVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 64
+ ++ E + L +EPV G + DE + + V + GP ++ DYP
Sbjct: 7 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 111
S P RF+TK++HPNI G +C+ IL ++W+P +RT+LLS+ +L
Sbjct: 67 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 126
Query: 112 LSAPNPDDPLANDVAELWK 130
L+ PN P D + +++
Sbjct: 127 LNEPNTFSPANVDASVMYR 145
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%)
Query: 38 IVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSP 97
+V P++ YP PKV+ T +YHPNID G + L+IL++ W P
Sbjct: 59 LVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKP 118
Query: 98 ALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTR 145
L I +++ +Q L PNP+DPL + AE+ + N +N + R
Sbjct: 119 VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 166
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXD 61
++L R+ T+ +M G + + + F V+ GP + D
Sbjct: 2 TSLTRKQCDFTKLIMA----GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDD 57
Query: 62 YPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVL-LSIQALLSAPNPDD 119
YP ++P + F+ K+ HPN+D G +CLD++ W+P + V + + LL+ PNP D
Sbjct: 58 YPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSD 117
Query: 120 PLANDVAELWKVNEAEAIRNAKEWTRKYA 148
PL +D A L ++ KE+ + YA
Sbjct: 118 PLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 62 YPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDD 119
YP +P + F+ KI+HPNID G +CLD++ W+ + + S + LL+ PNP D
Sbjct: 80 YPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPID 139
Query: 120 PLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
PL D A ++ E + KE+ +KYA +
Sbjct: 140 PLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 70 DYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 129
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 130 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 72 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 131
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 132 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 68 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 127
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 128 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 67 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 126
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 127 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 69 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 128
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 129 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 70 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 129
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 130 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 69 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 128
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 129 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HP + G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 70 DYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 129
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 130 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 70 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 129
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
P + ++ N E + + +K+A
Sbjct: 130 SPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 35 FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRICLDILKD 93
F V GPE + DYP +P + F +I HPN+D R G +CLD++
Sbjct: 40 FWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ 99
Query: 94 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAEL 128
W+P Q+ + + + LL PNP DPL A L
Sbjct: 100 TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHL 135
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 70 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 129
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
P + ++ N E + + +K+A
Sbjct: 130 APAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPD 118
+YP PKV+F YHPN+ G ICL IL + W PA+ ++ ++L +Q LL +PNP+
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 126
Query: 119 DPLANDVAELWKVNEAE 135
P + N+AE
Sbjct: 127 SPAQEPAWRSFSRNKAE 143
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPD 118
+YP PKV+F YHPN+ G ICL IL + W PA+ ++ ++L +Q LL +PNP+
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 128
Query: 119 DPLANDVAELWKVNEAE 135
P + N+AE
Sbjct: 129 SPAQEPAWRSFSRNKAE 145
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G + L IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 67 DYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 126
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 127 DPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G + L IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 67 DYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 126
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
DP + ++ N E + + +K+A
Sbjct: 127 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 118
+YP PK RF ++HPN+ G +CL IL ++ W PA+ I+ +LL IQ LL PN
Sbjct: 73 EYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIA 132
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
P + ++K ++ E + + R+ A
Sbjct: 133 SPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 1 MSALPRRIIKETQRLMQE-PVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXX 59
+S + ++KE L P PD + F + VT P++
Sbjct: 12 VSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVP 70
Query: 60 XDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK------WSPALQIRTVLLSIQALLS 113
Y M PKV+ +TKI+HPNI G ICL +L++ W+P ++ V+ + +L +
Sbjct: 71 DAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 130
Query: 114 -APNPDDPLANDVAELWKVNEAEAIRN-AKEWTRKYA 148
N DDPL + AE + + E RN ++ ++YA
Sbjct: 131 DLLNFDDPLNIEAAE-HHLRDKEDFRNKVDDYIKRYA 166
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 1 MSALPRRIIKETQRLMQE-PVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXX 59
+S + ++KE L P PD + F + VT P++
Sbjct: 12 VSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVP 70
Query: 60 XDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK------WSPALQIRTVLLSIQALLS 113
Y M PKV+ +TKI+HPNI G ICL +L++ W+P ++ V+ + +L +
Sbjct: 71 DAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 130
Query: 114 -APNPDDPLANDVAELWKVNEAEAIRN-AKEWTRKYA 148
N DDPL + AE + + E RN ++ ++YA
Sbjct: 131 DLLNFDDPLNIEAAE-HHLRDKEDFRNKVDDYIKRYA 166
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 28 DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFI-TKIYHPNIDR-LGR 85
DE++ + I++GP D+ YPM+ PK+ F+ I H N+ G
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGE 102
Query: 86 ICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRN 139
ICL+ILK ++W+P + + ++ LL P D PL D+ + + + A +
Sbjct: 103 ICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQG 157
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 28 DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFI-TKIYHPNIDR-LGR 85
DE++ + I++GP D+ YPM+ PK+ F+ I H N+ G
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102
Query: 86 ICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRN 139
ICL+ILK ++W+P + + ++ LL P D PL D+ + + + A +
Sbjct: 103 ICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQG 157
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 28 DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFI-TKIYHPNIDR-LGR 85
DE++ + I++GP D+ YPM+ PK+ F+ I H N+ G
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102
Query: 86 ICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRN 139
ICL+ILK ++W+P + + ++ LL P D PL D+ + + + A +
Sbjct: 103 ICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQG 157
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIV--TGPEDSXXXXXXXXXXXXX 58
M+++ +R+ KE L +P PG++ IV G +
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 59 XXDYPMSAPKVRFITKI--YHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLS 113
YP +P+V F + HP++ G ICL IL + WSPAL +++V LSI ++LS
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 22 GISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNID 81
GI+A P + + V + G ++S +Y + P V+FIT +HPN+D
Sbjct: 42 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 82 -RLGRICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEA 134
G+ C+D L +KW+ + ++LL++Q +LS P ++P+ + A + +E+
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDES 157
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 7 RIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSA 66
RI KE + P + +N R + V G E++ DYP+
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 67 PKVRFITKI-YHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114
P V F+ K H ++ G ICL +L D ++P+L I ++LSI ++LS+
Sbjct: 70 PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 7 RIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSA 66
RI KE ++ P + SN R + V G E++ +YP+
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 67 PKVRFITKI-YHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114
P V F+ K H ++ G ICL +L D ++P+L I ++LSI ++LS+
Sbjct: 84 PIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSS 132
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 65
+R+ ++ R+ ++PVP I A P SN +H +V GPE + ++P
Sbjct: 17 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 76
Query: 66 APKVRFITKIYHPN--IDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 117
P + IT PN R+CL D D W+PA + T+L + + + P
Sbjct: 77 PPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 28 DESNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYH-----PNIDR 82
DE V++TGP D+ DYP S P V T H PN+
Sbjct: 105 DEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164
Query: 83 LGRICLDIL-------KDKWSPAL-QIRTVLLSIQALLSAPNP 117
G++CL IL ++KW+P VL+S+Q+L+ P
Sbjct: 165 DGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRIC---LDILKDKWSPALQIRTVLLSI-QALLSAPN 116
+YP S P V+F TKI +D GR+ L ILK+ W+ I T+L+S+ Q +LS+ N
Sbjct: 83 NYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSAN 141
Query: 117 PDDPLANDVAELWKVN 132
P N+ E++ N
Sbjct: 142 KRLPQPNE-GEVYSNN 156
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRIC---LDILKDKWSPALQIRTVLLSI-QALLSAPN 116
+YP S P V+F TKI +D GR+ L ILK+ W+ I T+L+S+ Q +LS+ N
Sbjct: 87 NYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSAN 145
Query: 117 PDDPLAND 124
P N+
Sbjct: 146 KRLPQPNE 153
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVL 105
DYP P VRF+T +Y P + G IC ++ D W+P V+
Sbjct: 80 DYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVI 124
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 1 MSALPR--RIIKETQRLMQEPVP-----GISAVPDESNARYFHVIVTGPEDSXXXXXXXX 53
MS +PR R+++E ++ + P G++ D + ++ I+ GP S
Sbjct: 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTIL-GPPHSNHENRIYS 60
Query: 54 XXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRICLDI--LKDKWSPALQIRTVLLSIQA 110
+YP S PKV FI+KI P ++ G + D L+D W A + T+LL ++
Sbjct: 61 LSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRK 119
Query: 111 LLSAP 115
++ P
Sbjct: 120 EMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 1 MSALPR--RIIKETQRLMQEPVP-----GISAVPDESNARYFHVIVTGPEDSXXXXXXXX 53
MS +PR R+++E ++ + P G++ D + ++ I+ GP S
Sbjct: 1 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTIL-GPPHSNHENRIYS 59
Query: 54 XXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRICLDI--LKDKWSPALQIRTVLLSIQA 110
+YP S PKV FI+KI P ++ G + D L+D W A + T+LL ++
Sbjct: 60 LSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRK 118
Query: 111 LLSAP 115
++ P
Sbjct: 119 EMATP 123
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 5 PRRIIKETQRLMQEPVPGISAVPDESNAR 33
P ++I+ T +Q+PVPG + DE++A
Sbjct: 405 PDKVIQATTYFLQKPVPGFEELKDETSAE 433
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 5 PRRIIKETQRLMQEPVPGISAVPDESNAR 33
P ++I+ T +Q+PVPG + DE++A
Sbjct: 405 PDKVIQATTYFLQKPVPGFEELKDETSAE 433
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 5 PRRIIKETQRLMQEPVPGISAVPDESNAR 33
P ++I+ T +Q+PVPG + DE++A
Sbjct: 405 PDKVIQATTYFLQKPVPGFEELKDETSAE 433
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 5 PRRIIKETQRLMQEPVPGISAVPDESNAR 33
P ++I+ T +Q+PVPG + DE++A
Sbjct: 405 PDKVIQATTYFLQKPVPGFEELKDETSAE 433
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRIC----LDILKDKWSPALQIRTVLLSIQALL 112
YP + P VRF+TKI I+ + + +L KW + I+ VL ++ L+
Sbjct: 73 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRIC----LDILKDKWSPALQIRTVLLSIQALL 112
YP + P VRF+TKI I+ + + +L KW + I+ VL ++ L+
Sbjct: 67 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRIC----LDILKDKWSPALQIRTVLLSIQALL 112
YP + P VRF+TKI I+ + + +L KW + I+ VL ++ L+
Sbjct: 78 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 131
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRIC----LDILKDKWSPALQIRTVLLSIQALL 112
YP + P VRF+TKI I+ + + +L KW + I+ VL ++ L+
Sbjct: 68 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 121
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRI----CLDILKDKWSPALQIRTVLLSIQALL 112
YP + P VRF+TKI ++ + + +L KW + I+ VL ++ L+
Sbjct: 70 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRI----CLDILKDKWSPALQIRTVLLSIQALL 112
YP + P VRF+TKI ++ + + +L KW + I+ VL ++ L+
Sbjct: 98 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRI----CLDILKDKWSPALQIRTVLLSIQALL 112
YP + P VRF+TKI ++ + + +L KW + I+ VL ++ L+
Sbjct: 88 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,033,111
Number of Sequences: 62578
Number of extensions: 127661
Number of successful extensions: 451
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 125
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)