Query psy3497
Match_columns 151
No_of_seqs 154 out of 1083
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 18:12:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 100.0 4.1E-58 8.9E-63 321.3 15.3 147 4-150 2-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 3.3E-56 7.1E-61 317.9 17.7 146 4-149 6-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 3.9E-54 8.4E-59 309.8 19.5 150 1-151 1-150 (152)
4 PLN00172 ubiquitin conjugating 100.0 1.5E-52 3.2E-57 300.3 19.3 145 5-149 3-147 (147)
5 KOG0419|consensus 100.0 2.4E-52 5.2E-57 285.1 15.1 148 1-148 1-149 (152)
6 KOG0418|consensus 100.0 2.1E-48 4.5E-53 280.4 15.4 150 1-150 1-154 (200)
7 KOG0425|consensus 100.0 5.9E-47 1.3E-51 265.6 16.1 143 5-147 7-163 (171)
8 KOG0424|consensus 100.0 2.2E-46 4.7E-51 259.3 15.5 150 1-150 1-158 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 5E-46 1.1E-50 264.6 14.5 138 7-144 1-140 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 2.5E-45 5.4E-50 261.4 16.9 139 6-144 2-141 (141)
11 smart00212 UBCc Ubiquitin-conj 100.0 1E-44 2.3E-49 259.3 17.9 143 6-148 1-145 (145)
12 KOG0426|consensus 100.0 8.5E-45 1.8E-49 248.3 14.6 147 1-147 1-162 (165)
13 KOG0421|consensus 100.0 4.6E-45 9.9E-50 252.8 12.2 144 3-147 29-172 (175)
14 KOG0422|consensus 100.0 7.7E-42 1.7E-46 235.6 14.7 148 1-150 1-150 (153)
15 KOG0416|consensus 100.0 4.1E-42 8.8E-47 244.2 12.2 147 1-150 1-149 (189)
16 KOG0423|consensus 100.0 6.6E-39 1.4E-43 228.5 8.2 147 4-150 11-157 (223)
17 KOG0420|consensus 100.0 1.6E-37 3.6E-42 221.1 11.9 142 5-149 30-175 (184)
18 KOG0427|consensus 100.0 5.9E-32 1.3E-36 185.0 11.4 118 3-121 15-134 (161)
19 KOG0894|consensus 100.0 5.5E-29 1.2E-33 183.3 14.6 111 4-116 6-119 (244)
20 KOG0429|consensus 99.9 7.8E-27 1.7E-31 172.4 14.2 140 6-146 22-167 (258)
21 KOG0428|consensus 99.9 2E-22 4.2E-27 151.4 9.6 110 2-114 10-122 (314)
22 KOG0895|consensus 99.7 4.6E-18 9.9E-23 148.5 7.4 109 6-114 854-971 (1101)
23 KOG0895|consensus 99.7 1.9E-16 4.2E-21 138.4 10.9 112 4-115 283-405 (1101)
24 KOG0896|consensus 99.6 2.3E-15 5E-20 103.9 8.4 111 4-114 6-123 (138)
25 KOG0897|consensus 98.8 8.2E-09 1.8E-13 69.6 5.6 90 52-142 13-108 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.8 3.4E-08 7.4E-13 69.6 7.7 67 48-114 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.4 2.2E-06 4.7E-11 59.5 7.4 78 32-114 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.0 2.3E-06 5.1E-11 60.1 2.1 96 5-105 26-135 (161)
29 KOG2391|consensus 97.4 0.00095 2.1E-08 53.4 8.1 81 31-116 51-139 (365)
30 KOG3357|consensus 97.1 0.001 2.2E-08 46.3 4.7 95 5-105 29-138 (167)
31 PF05773 RWD: RWD domain; Int 96.8 0.0064 1.4E-07 40.6 6.3 69 6-75 4-74 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.7 0.024 5.1E-07 39.3 8.7 90 21-113 12-120 (122)
33 smart00591 RWD domain in RING 96.2 0.041 8.9E-07 36.3 7.5 26 48-73 39-64 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.7 0.14 3E-06 37.2 8.8 62 53-114 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 92.0 0.29 6.4E-06 38.9 4.6 86 5-113 101-187 (291)
36 KOG4018|consensus 86.7 2.8 6E-05 31.8 6.0 67 1-71 1-70 (215)
37 KOG0309|consensus 85.6 4.3 9.4E-05 36.5 7.4 68 5-74 422-491 (1081)
38 PF14460 Prok-E2_D: Prokaryoti 77.0 3.8 8.3E-05 30.0 3.7 40 73-115 90-133 (175)
39 PF06113 BRE: Brain and reprod 74.9 9 0.00019 31.1 5.5 67 32-110 53-122 (333)
40 TIGR03737 PRTRC_B PRTRC system 72.1 7.1 0.00015 30.0 4.2 41 74-118 132-176 (228)
41 cd00421 intradiol_dioxygenase 61.0 15 0.00033 25.9 3.8 24 49-72 65-89 (146)
42 PF06113 BRE: Brain and reprod 59.7 22 0.00047 28.9 4.9 25 49-73 305-329 (333)
43 cd03457 intradiol_dioxygenase_ 57.7 18 0.00039 26.9 3.9 25 49-73 86-110 (188)
44 smart00340 HALZ homeobox assoc 50.6 17 0.00037 20.3 2.1 14 5-18 21-34 (44)
45 PF03366 YEATS: YEATS family; 48.5 62 0.0014 20.7 4.8 42 33-76 2-43 (84)
46 cd03459 3,4-PCD Protocatechuat 47.6 34 0.00073 24.7 3.8 25 49-73 72-101 (158)
47 KOG0662|consensus 44.6 25 0.00054 26.6 2.8 54 64-117 167-224 (292)
48 PF15005 IZUMO: Izumo sperm-eg 40.9 1.2E+02 0.0026 22.0 5.8 51 101-151 71-121 (160)
49 TIGR02423 protocat_alph protoc 39.4 49 0.0011 24.7 3.7 24 49-72 96-124 (193)
50 cd05845 Ig2_L1-CAM_like Second 38.1 91 0.002 20.4 4.5 26 47-74 16-41 (95)
51 cd07981 TAF12 TATA Binding Pro 36.2 1E+02 0.0023 18.9 4.7 42 107-148 6-47 (72)
52 PF11333 DUF3135: Protein of u 35.6 96 0.0021 19.9 4.2 27 120-146 4-30 (83)
53 cd03463 3,4-PCD_alpha Protocat 34.8 65 0.0014 23.9 3.8 23 50-72 93-120 (185)
54 KOG4690|consensus 34.6 71 0.0015 22.7 3.6 37 114-150 77-120 (165)
55 KOG4445|consensus 34.4 51 0.0011 26.6 3.2 25 50-74 45-69 (368)
56 COG0525 ValS Valyl-tRNA synthe 34.3 2.3E+02 0.0051 26.3 7.7 65 78-149 42-122 (877)
57 KOG3285|consensus 33.1 89 0.0019 23.3 4.1 55 4-69 120-174 (203)
58 PF14798 Ca_hom_mod: Calcium h 30.9 34 0.00075 26.7 1.8 26 126-151 214-240 (251)
59 PF12018 DUF3508: Domain of un 30.3 72 0.0016 25.1 3.5 28 121-148 239-266 (281)
60 KOG0177|consensus 30.0 30 0.00066 25.9 1.3 30 83-112 135-164 (200)
61 COG0544 Tig FKBP-type peptidyl 28.1 1.4E+02 0.0031 25.3 5.1 14 52-65 211-224 (441)
62 cd01019 ZnuA Zinc binding prot 26.9 1E+02 0.0022 24.1 3.9 49 94-148 123-171 (286)
63 PF14135 DUF4302: Domain of un 26.7 2E+02 0.0043 21.9 5.4 68 3-84 9-103 (235)
64 PF04881 Adeno_GP19K: Adenovir 25.8 1.1E+02 0.0025 21.4 3.4 21 28-48 43-63 (139)
65 PF12065 DUF3545: Protein of u 25.7 50 0.0011 19.9 1.4 14 5-18 36-49 (59)
66 cd01145 TroA_c Periplasmic bin 25.0 88 0.0019 23.1 3.1 46 95-146 111-156 (203)
67 PF14455 Metal_CEHH: Predicted 24.8 1.8E+02 0.004 21.1 4.4 63 8-74 10-76 (177)
68 cd03464 3,4-PCD_beta Protocate 23.8 1.3E+02 0.0028 23.0 3.7 24 49-72 122-152 (220)
69 PF09280 XPC-binding: XPC-bind 23.7 1.2E+02 0.0027 18.0 2.9 21 121-141 34-54 (59)
70 TIGR02439 catechol_proteo cate 23.6 1.2E+02 0.0027 24.1 3.8 24 49-72 180-221 (285)
71 smart00803 TAF TATA box bindin 22.8 1.9E+02 0.004 17.5 4.7 29 120-148 19-47 (65)
72 TIGR02422 protocat_beta protoc 22.3 1.4E+02 0.0031 22.8 3.7 24 49-72 117-147 (220)
73 cd03461 1,2-HQD Hydroxyquinol 22.2 1.4E+02 0.003 23.7 3.8 24 49-72 172-213 (277)
74 TIGR01239 galT_2 galactose-1-p 22.0 78 0.0017 27.1 2.4 26 47-81 356-386 (489)
75 KOG3696|consensus 21.7 2E+02 0.0044 23.3 4.6 42 46-87 283-330 (334)
76 TIGR02438 catachol_actin catec 21.6 1.5E+02 0.0032 23.6 3.8 24 49-72 184-225 (281)
77 PF03847 TFIID_20kDa: Transcri 20.9 2.1E+02 0.0047 17.5 4.8 42 107-148 4-45 (68)
78 KOG1047|consensus 20.8 98 0.0021 27.2 2.8 30 44-74 247-279 (613)
79 cd03460 1,2-CTD Catechol 1,2 d 20.3 1.6E+02 0.0035 23.4 3.8 24 49-72 176-217 (282)
80 KOG2851|consensus 20.1 2.5E+02 0.0054 23.4 4.8 33 79-111 331-369 (412)
No 1
>KOG0417|consensus
Probab=100.00 E-value=4.1e-58 Score=321.28 Aligned_cols=147 Identities=61% Similarity=1.040 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCC
Q psy3497 4 LPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRL 83 (151)
Q Consensus 4 ~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 83 (151)
+.+||++|++++.+++++||++.++++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+.+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCCCCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Q psy3497 84 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150 (151)
Q Consensus 84 G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (151)
|.||+|+|++.|+|+++|..||++|+++|.+||+++|++.++|++|+.|+.+|.++||+||++||+.
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-56 Score=317.89 Aligned_cols=146 Identities=50% Similarity=0.971 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHhhhCCCCCEEEEeCCC-CCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccC
Q psy3497 4 LPRRIIKETQRLMQEPVPGISAVPDES-NARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDR 82 (151)
Q Consensus 4 ~~kRl~~E~~~l~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 82 (151)
+.+||++|++++++++++++++.|..+ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++||||||++
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 789999999999999999999999977 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCCCCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy3497 83 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAM 149 (151)
Q Consensus 83 ~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~ 149 (151)
+|.||+|+|.+.|+|++++++||.+|+++|.+||+++|+|.|||++|++|+++|.++||+|+++||.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.9e-54 Score=309.82 Aligned_cols=150 Identities=67% Similarity=1.148 Sum_probs=146.4
Q ss_pred CCchHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccc
Q psy3497 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNI 80 (151)
Q Consensus 1 ms~~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (151)
|+ +.|||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 56 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEeccCCCCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhccCC
Q psy3497 81 DRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151 (151)
Q Consensus 81 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~~~ 151 (151)
+.+|.||+++|.+.|+|+++|++||++|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..+
T Consensus 80 ~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~~ 150 (152)
T PTZ00390 80 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKHN 150 (152)
T ss_pred CCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999754
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.5e-52 Score=300.32 Aligned_cols=145 Identities=49% Similarity=0.928 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCCC
Q psy3497 5 PRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLG 84 (151)
Q Consensus 5 ~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 84 (151)
.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy3497 85 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAM 149 (151)
Q Consensus 85 ~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~ 149 (151)
.||+++|.+.|+|+++|++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999984
No 5
>KOG0419|consensus
Probab=100.00 E-value=2.4e-52 Score=285.10 Aligned_cols=148 Identities=43% Similarity=0.813 Sum_probs=143.7
Q ss_pred CCc-hHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeecccccc
Q psy3497 1 MSA-LPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPN 79 (151)
Q Consensus 1 ms~-~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 79 (151)
||+ +.|||.+|+++++++++.||+..|.++|++.|.+.|.||.+|||+||+|++.|.|+++||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 665 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEeccCCCCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy3497 80 IDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148 (151)
Q Consensus 80 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a 148 (151)
|+++|.+|+|+|...|+|.|++..||.+||+||.+||+++|+|.|||++|.+|+.+|.+++++.+.+.-
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999988764
No 6
>KOG0418|consensus
Probab=100.00 E-value=2.1e-48 Score=280.41 Aligned_cols=150 Identities=45% Similarity=0.813 Sum_probs=146.0
Q ss_pred CCchHHHHHHHHHHhhhCC---CCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeecccc
Q psy3497 1 MSALPRRIIKETQRLMQEP---VPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYH 77 (151)
Q Consensus 1 ms~~~kRl~~E~~~l~~~~---~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 77 (151)
||...+||++|.+++.+++ ..||.+...++|+.+.++.|.||+|||||||+|.++|.+|++||++||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 7778899999999999988 6899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC-CCcEEeccCCCCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Q psy3497 78 PNIDR-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150 (151)
Q Consensus 78 pnv~~-~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (151)
|||.+ +|.||+|++.+.|.+++|++.+|++||++|..|++.+|....+|++|.+|++.|.++||.|+..||..
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999974
No 7
>KOG0425|consensus
Probab=100.00 E-value=5.9e-47 Score=265.64 Aligned_cols=143 Identities=35% Similarity=0.718 Sum_probs=136.5
Q ss_pred HHHHHHHHHHhhhCCCCCEEEEeCC-CCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCC
Q psy3497 5 PRRIIKETQRLMQEPVPGISAVPDE-SNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRL 83 (151)
Q Consensus 5 ~kRl~~E~~~l~~~~~~~i~v~~~~-~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 83 (151)
..-|+++|++|++++..|+.+...+ +|+++|.+.|.||++|+||||.|+..+.||.+||.+||+++|.+++|||||+++
T Consensus 7 ~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~ 86 (171)
T KOG0425|consen 7 SLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYED 86 (171)
T ss_pred HHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCC
Confidence 4778899999999999999998874 599999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCC-------------CCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHh
Q psy3497 84 GRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKY 147 (151)
Q Consensus 84 G~icl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~ 147 (151)
|.+|+++|- +.|+|..|+++||++|.+||.+||.++|+|.|||+.|++|+++|.+++++++++.
T Consensus 87 G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 87 GDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 999999983 4699999999999999999999999999999999999999999999999999864
No 8
>KOG0424|consensus
Probab=100.00 E-value=2.2e-46 Score=259.34 Aligned_cols=150 Identities=33% Similarity=0.645 Sum_probs=142.1
Q ss_pred CCc-hHHHHHHHHHHhhhCCCCCEEEEeCC-----CCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeec
Q psy3497 1 MSA-LPRRIIKETQRLMQEPVPGISAVPDE-----SNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITK 74 (151)
Q Consensus 1 ms~-~~kRl~~E~~~l~~~~~~~i~v~~~~-----~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 74 (151)
||+ ...||+.|-+.+.++.+.|+++.|.. .|++.|++.|.|+.||+||||.|.+.+.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 455 47799999999999999999998863 378999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEeccCCCC--CCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Q psy3497 75 IYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150 (151)
Q Consensus 75 i~Hpnv~~~G~icl~~l~~~--W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (151)
.|||||+++|.|||++|.+. |+|+.+|.+||.+|+.||.+||+.+|+|.||..+|.+|+++|.++||.++++||..
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999764 99999999999999999999999999999999999999999999999999999963
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=5e-46 Score=264.64 Aligned_cols=138 Identities=53% Similarity=0.996 Sum_probs=128.8
Q ss_pred HHHHHHHHhhhCCCCCEEEEeCCC-CCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCCCc
Q psy3497 7 RIIKETQRLMQEPVPGISAVPDES-NARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGR 85 (151)
Q Consensus 7 Rl~~E~~~l~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 85 (151)
||++|+++++++++.|+.+.+.++ |+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC-CCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHH
Q psy3497 86 ICLDILKD-KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWT 144 (151)
Q Consensus 86 icl~~l~~-~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~ 144 (151)
||+++|.. .|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999985 599999999999999999999999999999999999999999999999984
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.5e-45 Score=261.37 Aligned_cols=139 Identities=55% Similarity=1.002 Sum_probs=135.9
Q ss_pred HHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCCCc
Q psy3497 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGR 85 (151)
Q Consensus 6 kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 85 (151)
|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCC-CCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHH
Q psy3497 86 ICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWT 144 (151)
Q Consensus 86 icl~~l~~~-W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~ 144 (151)
||++++... |+|++++++||.+|+++|.+|+.++|+|.+||++|++|+++|.++|++|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999876 99999999999999999999999999999999999999999999999974
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1e-44 Score=259.27 Aligned_cols=143 Identities=56% Similarity=1.020 Sum_probs=139.1
Q ss_pred HHHHHHHHHhhhCCCCCEEEEeCCC-CCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCCC
Q psy3497 6 RRIIKETQRLMQEPVPGISAVPDES-NARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLG 84 (151)
Q Consensus 6 kRl~~E~~~l~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 84 (151)
+||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998765 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCC-CCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy3497 85 RICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148 (151)
Q Consensus 85 ~icl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a 148 (151)
.||++.+. ++|+|++++++||.+|+++|.+|+.++|+|.|||++|.+|+++|.++|++++++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999985
No 12
>KOG0426|consensus
Probab=100.00 E-value=8.5e-45 Score=248.30 Aligned_cols=147 Identities=37% Similarity=0.724 Sum_probs=140.2
Q ss_pred CCc-hHHHHHHHHHHhhhCCCCCEEEEeC-CCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccc
Q psy3497 1 MSA-LPRRIIKETQRLMQEPVPGISAVPD-ESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHP 78 (151)
Q Consensus 1 ms~-~~kRl~~E~~~l~~~~~~~i~v~~~-~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 78 (151)
|++ +.|||++||++|..+++.||.+.|. +||+.+|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 444 6899999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcEEeccCC-------------CCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHH
Q psy3497 79 NIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTR 145 (151)
Q Consensus 79 nv~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~ 145 (151)
||+++|+||+++|- +.|+|..+++.||+++-+||.+||.++++|.+|+.++++|+++|.+.||.-++
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvr 160 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVR 160 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999983 47999999999999999999999999999999999999999999999999988
Q ss_pred Hh
Q psy3497 146 KY 147 (151)
Q Consensus 146 ~~ 147 (151)
|.
T Consensus 161 Kt 162 (165)
T KOG0426|consen 161 KT 162 (165)
T ss_pred Hh
Confidence 74
No 13
>KOG0421|consensus
Probab=100.00 E-value=4.6e-45 Score=252.85 Aligned_cols=144 Identities=42% Similarity=0.774 Sum_probs=139.0
Q ss_pred chHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccC
Q psy3497 3 ALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDR 82 (151)
Q Consensus 3 ~~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 82 (151)
++.|||++|+..|.....+||++.|+++|+..|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|++|||||+-
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~ 108 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL 108 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccCCCCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHh
Q psy3497 83 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKY 147 (151)
Q Consensus 83 ~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~ 147 (151)
.|.||+|+|.+.|+..|+++.||++||++|-+||.++|+|..||+++. |.++|.+.+.+.-++.
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999998 9999999988776543
No 14
>KOG0422|consensus
Probab=100.00 E-value=7.7e-42 Score=235.60 Aligned_cols=148 Identities=36% Similarity=0.728 Sum_probs=139.9
Q ss_pred CCchHHHHHHHHHHhhhCCCCCE-EEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeecccccc
Q psy3497 1 MSALPRRIIKETQRLMQEPVPGI-SAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPN 79 (151)
Q Consensus 1 ms~~~kRl~~E~~~l~~~~~~~i-~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 79 (151)
|+ ..+||++|+.+|++++...+ .+..++.|++.|++.|. |.+.||..|.|+++|.||.+|||+||+|.|.|+|||||
T Consensus 1 m~-a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN 78 (153)
T KOG0422|consen 1 MA-APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN 78 (153)
T ss_pred Cc-hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence 44 67999999999999987766 36667899999999999 99999999999999999999999999999999999999
Q ss_pred ccCCCcEEeccCC-CCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Q psy3497 80 IDRLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150 (151)
Q Consensus 80 v~~~G~icl~~l~-~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (151)
|++.|.+|+.++. ++|.|+..+++||+.|.+++.+|+++.|++.|+|..|.+|+..|.++|.+|++||+.+
T Consensus 79 VDe~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 79 VDEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred CCCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 9999999999985 8999999999999999999999999999999999999999999999999999999854
No 15
>KOG0416|consensus
Probab=100.00 E-value=4.1e-42 Score=244.17 Aligned_cols=147 Identities=36% Similarity=0.722 Sum_probs=139.2
Q ss_pred CCchHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccc
Q psy3497 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNI 80 (151)
Q Consensus 1 ms~~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (151)
||+..|||-.|..+|... +..|...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||
T Consensus 1 ms~~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNI 77 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNI 77 (189)
T ss_pred CCCcccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCc
Confidence 788899999999999874 45788889999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCcEEeccCCCCCCccCCHHHHHHHH-HHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Q psy3497 81 DR-LGRICLDILKDKWSPALQIRTVLLSI-QALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150 (151)
Q Consensus 81 ~~-~G~icl~~l~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (151)
+. +|.||+|.+++.|+|.+.+..|+..+ -.||..||+.+|+|.|||.+|..++++|.+++|++++|||++
T Consensus 78 De~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 78 DEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred hhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 98 99999999999999999999998754 778999999999999999999999999999999999999986
No 16
>KOG0423|consensus
Probab=100.00 E-value=6.6e-39 Score=228.48 Aligned_cols=147 Identities=37% Similarity=0.673 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCC
Q psy3497 4 LPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRL 83 (151)
Q Consensus 4 ~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 83 (151)
+.|.+.+|++.+...|+.||.|.+.++|+...++.|.||.||||++|.|++.+.+..|||.+||+-.|+|+||||||..+
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaN 90 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAAN 90 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCCCCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Q psy3497 84 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150 (151)
Q Consensus 84 G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (151)
|.||..+|..+|+|.++|..||..|+.+|..|++++++|+||..+..++.++|.+.||-++.-+|.+
T Consensus 91 GEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 91 GEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred ceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 17
>KOG0420|consensus
Probab=100.00 E-value=1.6e-37 Score=221.06 Aligned_cols=142 Identities=32% Similarity=0.644 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhhhCCCCCEEE--EeCCCCCc--EEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccc
Q psy3497 5 PRRIIKETQRLMQEPVPGISA--VPDESNAR--YFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNI 80 (151)
Q Consensus 5 ~kRl~~E~~~l~~~~~~~i~v--~~~~~~~~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 80 (151)
.-||++|..++ +.+++++. ....++.. +.+++|. |+.+.|+||.|.|.+.+|+.||+.||+|+++|+||||||
T Consensus 30 ~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNI 106 (184)
T KOG0420|consen 30 LLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNI 106 (184)
T ss_pred HHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCc
Confidence 44555555544 44555543 22244444 5999999 999999999999999999999999999999999999999
Q ss_pred cCCCcEEeccCCCCCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Q psy3497 81 DRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAM 149 (151)
Q Consensus 81 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~ 149 (151)
+.+|.||+++|+++|+|..++.+|+.+|+.+|.+|+++||+|.|||+++++|++.|...||.....++.
T Consensus 107 d~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 107 DLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred CCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999998877663
No 18
>KOG0427|consensus
Probab=99.98 E-value=5.9e-32 Score=184.96 Aligned_cols=118 Identities=34% Similarity=0.620 Sum_probs=109.8
Q ss_pred chHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeecc-cccccc
Q psy3497 3 ALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKI-YHPNID 81 (151)
Q Consensus 3 ~~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~ 81 (151)
.+.+||+||+.+++.++|.|+... ..||+.+|.+-+.|.+||.|+|..|.+.+.||+.||+..|.|.|..++ .||+|+
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 358999999999999999999887 789999999999999999999999999999999999999999999996 799999
Q ss_pred CCCcEEeccCCCCCCccCCHHHHHHHHHHhhcC-CCCCCCh
Q psy3497 82 RLGRICLDILKDKWSPALQIRTVLLSIQALLSA-PNPDDPL 121 (151)
Q Consensus 82 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~ll~~-p~~~~p~ 121 (151)
.||.||+++|.+.|+|++++.+|.++|.+||++ ..-..|.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 999999999999999999999999999999997 3334443
No 19
>KOG0894|consensus
Probab=99.96 E-value=5.5e-29 Score=183.27 Aligned_cols=111 Identities=32% Similarity=0.676 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCC
Q psy3497 4 LPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRL 83 (151)
Q Consensus 4 ~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 83 (151)
+.|||+|||+.|+++|.++|.+.|.++|+.+||.+|.||++|||+||.|+.+|.||.+||++||.|++.||- ..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--GRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--GRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--CceecC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999974 223345
Q ss_pred CcEEeccC---CCCCCccCCHHHHHHHHHHhhcCCC
Q psy3497 84 GRICLDIL---KDKWSPALQIRTVLLSIQALLSAPN 116 (151)
Q Consensus 84 G~icl~~l---~~~W~p~~~i~~vl~~i~~ll~~p~ 116 (151)
-++|+++- .+.|+|++++.+||.+|.++|.+-.
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 69999765 6899999999999999999988733
No 20
>KOG0429|consensus
Probab=99.95 E-value=7.8e-27 Score=172.43 Aligned_cols=140 Identities=21% Similarity=0.414 Sum_probs=128.3
Q ss_pred HHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCC--CCCeEEEeeccccccccC-
Q psy3497 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPM--SAPKVRFITKIYHPNIDR- 82 (151)
Q Consensus 6 kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpnv~~- 82 (151)
-.|+.|+..+.+.+.+||+|.|+..|-+.|.++|++ ..+.|.||+|+|+|.+|++||. +-|+|.|.+.++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 458889999999999999999999999999999995 6678999999999999999995 479999999999999998
Q ss_pred CCcEEeccCCCCCCccC-CHHHHHHHHHHhhcCCCCCCC--hhHHHHHHHHHCHHHHHHHHHHHHHH
Q psy3497 83 LGRICLDILKDKWSPAL-QIRTVLLSIQALLSAPNPDDP--LANDVAELWKVNEAEAIRNAKEWTRK 146 (151)
Q Consensus 83 ~G~icl~~l~~~W~p~~-~i~~vl~~i~~ll~~p~~~~p--~n~eaa~~~~~~~~~f~~~~~~~~~~ 146 (151)
++.+|+......|+... +|++||..++..|++|+.+.+ .|+||+.+|.+++++|.++|+++++.
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 89999987777798765 699999999999999998766 49999999999999999999999874
No 21
>KOG0428|consensus
Probab=99.88 E-value=2e-22 Score=151.39 Aligned_cols=110 Identities=33% Similarity=0.661 Sum_probs=97.8
Q ss_pred CchHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeecccccccc
Q psy3497 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNID 81 (151)
Q Consensus 2 s~~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 81 (151)
+...|||++|.++++ +|...+-+.|.++|+.+|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+- ..+.
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Ccee
Confidence 456899999999999 6666777899999999999999999999999999999999999999999999999864 3344
Q ss_pred CCCcEEeccC---CCCCCccCCHHHHHHHHHHhhcC
Q psy3497 82 RLGRICLDIL---KDKWSPALQIRTVLLSIQALLSA 114 (151)
Q Consensus 82 ~~G~icl~~l---~~~W~p~~~i~~vl~~i~~ll~~ 114 (151)
-+-+||+++- .+.|.|+++|+..|..|..+|-.
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 4678999886 48999999999999999998865
No 22
>KOG0895|consensus
Probab=99.73 E-value=4.6e-18 Score=148.46 Aligned_cols=109 Identities=29% Similarity=0.594 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeec--cccccccCC
Q psy3497 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITK--IYHPNIDRL 83 (151)
Q Consensus 6 kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv~~~ 83 (151)
+..+.|++-+..+.+.||+|...++.+....+.|.||.||||..|.|.|++.||++||.+||.|...+. .++||.+..
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 445667777778889999999999999999999999999999999999999999999999999999887 589999999
Q ss_pred CcEEeccCC-------CCCCccCCHHHHHHHHHHhhcC
Q psy3497 84 GRICLDILK-------DKWSPALQIRTVLLSIQALLSA 114 (151)
Q Consensus 84 G~icl~~l~-------~~W~p~~~i~~vl~~i~~ll~~ 114 (151)
|+||+++|. +-|+|+-+|.+||.+||.|.-.
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 999999995 5799988999999999998654
No 23
>KOG0895|consensus
Probab=99.68 E-value=1.9e-16 Score=138.41 Aligned_cols=112 Identities=31% Similarity=0.686 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeec---cccccc
Q psy3497 4 LPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITK---IYHPNI 80 (151)
Q Consensus 4 ~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~---i~Hpnv 80 (151)
..+|+++|++.+.++.+.|+.+.+.+..+...++.|.||.||||++|+|.|+|.||..||..||.|.+++. .+.||.
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNl 362 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNL 362 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999988 589999
Q ss_pred cCCCcEEeccCC-------CCCCcc-CCHHHHHHHHHHhhcCC
Q psy3497 81 DRLGRICLDILK-------DKWSPA-LQIRTVLLSIQALLSAP 115 (151)
Q Consensus 81 ~~~G~icl~~l~-------~~W~p~-~~i~~vl~~i~~ll~~p 115 (151)
+.+|+||+++|. +.|+|. -+|.++|.+|+.++..-
T Consensus 363 Yn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 363 YNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred ccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 999999999983 679998 68999999999997753
No 24
>KOG0896|consensus
Probab=99.62 E-value=2.3e-15 Score=103.86 Aligned_cols=111 Identities=19% Similarity=0.293 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHhhhCCCCCEE-EEeC-CCC--CcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeecccccc
Q psy3497 4 LPRRIIKETQRLMQEPVPGIS-AVPD-ESN--ARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPN 79 (151)
Q Consensus 4 ~~kRl~~E~~~l~~~~~~~i~-v~~~-~~~--~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 79 (151)
..-||++|+.+-++...+|.. .... .+| +..|.++|.||+.|+||+-+|.++|.+..+||..||+|+|.+++--+.
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 356899999888776555543 3333 333 468999999999999999999999999999999999999999998888
Q ss_pred ccC-CCcEEeccC--CCCCCccCCHHHHHHHHHHhhcC
Q psy3497 80 IDR-LGRICLDIL--KDKWSPALQIRTVLLSIQALLSA 114 (151)
Q Consensus 80 v~~-~G~icl~~l--~~~W~p~~~i~~vl~~i~~ll~~ 114 (151)
|+. +|.|.-..+ ..+|...+++..+|..++.++..
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 887 777766433 37899999999999999865543
No 25
>KOG0897|consensus
Probab=98.83 E-value=8.2e-09 Score=69.62 Aligned_cols=90 Identities=20% Similarity=0.362 Sum_probs=66.6
Q ss_pred EEEEEECCCCCCCCCCeEEEeeccc-cccccCCCcEEeccC-CCCCCccCCHHHHHHHHHHhhcCCC--CCCChhHHHHH
Q psy3497 52 FKLELFLPEDYPMSAPKVRFITKIY-HPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPN--PDDPLANDVAE 127 (151)
Q Consensus 52 f~~~i~fp~~YP~~pP~v~f~t~i~-Hpnv~~~G~icl~~l-~~~W~p~~~i~~vl~~i~~ll~~p~--~~~p~n~eaa~ 127 (151)
.-+.+.|+++||+.||.++...|+- -.-|-.+|.||+.++ .++|+.+++++.++++|-+++.... ...+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 4567889999999999999887643 334556899999998 4899999999999999999998754 4566655544
Q ss_pred HHHHCH--HHHHHHHHH
Q psy3497 128 LWKVNE--AEAIRNAKE 142 (151)
Q Consensus 128 ~~~~~~--~~f~~~~~~ 142 (151)
+|...+ +.|+..++.
T Consensus 92 ~~s~~qa~~sfksLv~~ 108 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQI 108 (122)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 554432 235554443
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.78 E-value=3.4e-08 Score=69.58 Aligned_cols=67 Identities=31% Similarity=0.655 Sum_probs=61.2
Q ss_pred CCcEEEEEEECCCCCCCCCCeEEEeecc---ccccccCCCcEEe---ccCCCCCCccCCHHHHHHHHHHhhcC
Q psy3497 48 EGGLFKLELFLPEDYPMSAPKVRFITKI---YHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSA 114 (151)
Q Consensus 48 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~vl~~i~~ll~~ 114 (151)
.|+.+.+.|.+|+.||..||.|....+. +-|||+.+|.+|+ ....+.|.|.-.+.++|.+.+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998764 6899999999999 77778999999999999999999884
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.37 E-value=2.2e-06 Score=59.50 Aligned_cols=78 Identities=24% Similarity=0.499 Sum_probs=53.5
Q ss_pred CcEEEEEEECCCCCCCCCcEE--EEEEECCCCCCCCCCeEEEeecc-----ccccccCCCcEEeccCCCCCCc-cCCHHH
Q psy3497 32 ARYFHVIVTGPEDSPFEGGLF--KLELFLPEDYPMSAPKVRFITKI-----YHPNIDRLGRICLDILKDKWSP-ALQIRT 103 (151)
Q Consensus 32 ~~~w~~~i~Gp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~~ 103 (151)
+....++|. -.|+|..| .+.|.+|.+||.+||.+...... -+.+|+++|+|.+..| ++|.+ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 444555554 35777777 57788999999999999875442 2449999999998877 56876 678999
Q ss_pred HHHHHHHhhcC
Q psy3497 104 VLLSIQALLSA 114 (151)
Q Consensus 104 vl~~i~~ll~~ 114 (151)
++..+.+.|..
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99998888764
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.05 E-value=2.3e-06 Score=60.07 Aligned_cols=96 Identities=22% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhC------CC-CCEEEEeCCCCCcEEEEEEECCCCCCCCC--cEEEEEEECCCCCCCCCCeEEEeecc
Q psy3497 5 PRRIIKETQRLMQE------PV-PGISAVPDESNARYFHVIVTGPEDSPFEG--GLFKLELFLPEDYPMSAPKVRFITKI 75 (151)
Q Consensus 5 ~kRl~~E~~~l~~~------~~-~~i~v~~~~~~~~~w~~~i~Gp~~tpyeg--g~f~~~i~fp~~YP~~pP~v~f~t~i 75 (151)
..||..||+.|.+. .+ ..+.++ ++.+-+.|.+.--- .++- ..|.+++.+|..||..||.|....--
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 57999999887651 12 223333 23333444433210 0111 24667788999999999999764332
Q ss_pred -ccccccCCCcEEeccCC-CCC---CccCCHHHHH
Q psy3497 76 -YHPNIDRLGRICLDILK-DKW---SPALQIRTVL 105 (151)
Q Consensus 76 -~Hpnv~~~G~icl~~l~-~~W---~p~~~i~~vl 105 (151)
-..-.+..|+||++... .-| .|.++|...|
T Consensus 101 GKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 101 GKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 23456678999998875 234 5777887765
No 29
>KOG2391|consensus
Probab=97.41 E-value=0.00095 Score=53.38 Aligned_cols=81 Identities=19% Similarity=0.399 Sum_probs=62.6
Q ss_pred CCcEEEEEEECCCCCCCCCcEEE--EEEECCCCCCCCCCeEEEeec-----cccccccCCCcEEeccCCCCCC-ccCCHH
Q psy3497 31 NARYFHVIVTGPEDSPFEGGLFK--LELFLPEDYPMSAPKVRFITK-----IYHPNIDRLGRICLDILKDKWS-PALQIR 102 (151)
Q Consensus 31 ~~~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~W~-p~~~i~ 102 (151)
+++...++|. ++|.|..|. +.|.+.+.||..||.+..... -.|-+|+++|.|.+..|. +|. |+.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 4555555554 467777774 678899999999999866433 148999999999999884 676 667899
Q ss_pred HHHHHHHHhhcCCC
Q psy3497 103 TVLLSIQALLSAPN 116 (151)
Q Consensus 103 ~vl~~i~~ll~~p~ 116 (151)
.++..+.+.|.++.
T Consensus 126 ~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 126 GLIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999888744
No 30
>KOG3357|consensus
Probab=97.12 E-value=0.001 Score=46.28 Aligned_cols=95 Identities=25% Similarity=0.429 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCc----------EEEEEEECCCCCCCCCCeEEEeec
Q psy3497 5 PRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGG----------LFKLELFLPEDYPMSAPKVRFITK 74 (151)
Q Consensus 5 ~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~YP~~pP~v~f~t~ 74 (151)
.+||..|++.+... ++-..++-..|.-.=.-++||-|-|. .|.+++.+|-.||...|.+....-
T Consensus 29 vqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 47999999988752 22222223344444455778877773 355667789999999999865322
Q ss_pred c-ccccccCCCcEEeccC-CCCCC---ccCCHHHHH
Q psy3497 75 I-YHPNIDRLGRICLDIL-KDKWS---PALQIRTVL 105 (151)
Q Consensus 75 i-~Hpnv~~~G~icl~~l-~~~W~---p~~~i~~vl 105 (151)
- -.--.+..|.||+.-. ..-|. |.++|...+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 1 1123456799999544 45564 555665543
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.76 E-value=0.0064 Score=40.61 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEEC--CCCCCCCCcEEEEEEECCCCCCCCCCeEEEeecc
Q psy3497 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTG--PEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKI 75 (151)
Q Consensus 6 kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 75 (151)
.+.+.|+..|+.--+..+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 466778888886433333 22334455566677732 2334444568999999999999999999877654
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.70 E-value=0.024 Score=39.35 Aligned_cols=90 Identities=14% Similarity=0.333 Sum_probs=60.9
Q ss_pred CCEEEEeCCCCCcEEEEEEEC--CCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCCCcE--Eec-------
Q psy3497 21 PGISAVPDESNARYFHVIVTG--PEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRI--CLD------- 89 (151)
Q Consensus 21 ~~i~v~~~~~~~~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~i--cl~------- 89 (151)
.|+..+...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|.+-+..|-.... ..|.+ |.+
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 46777776666566765 555 55667999999999999999999999887766532111 01222 222
Q ss_pred -------cCCCCCCccC-CHHHHHHHHHHhhc
Q psy3497 90 -------ILKDKWSPAL-QIRTVLLSIQALLS 113 (151)
Q Consensus 90 -------~l~~~W~p~~-~i~~vl~~i~~ll~ 113 (151)
.....|+|.. ++.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1235688877 58888888877664
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.20 E-value=0.041 Score=36.33 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=22.1
Q ss_pred CCcEEEEEEECCCCCCCCCCeEEEee
Q psy3497 48 EGGLFKLELFLPEDYPMSAPKVRFIT 73 (151)
Q Consensus 48 egg~f~~~i~fp~~YP~~pP~v~f~t 73 (151)
..-.+.+.+.||.+||..+|.|.+.+
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568999999999999999998765
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.67 E-value=0.14 Score=37.25 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=49.4
Q ss_pred EEEEECCCCCCCCCCeEEEeeccc---cccccCC-----CcEEeccC-CCCCCccCCHHHHHHHHHHhhcC
Q psy3497 53 KLELFLPEDYPMSAPKVRFITKIY---HPNIDRL-----GRICLDIL-KDKWSPALQIRTVLLSIQALLSA 114 (151)
Q Consensus 53 ~~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l-~~~W~p~~~i~~vl~~i~~ll~~ 114 (151)
.+.|.|+.+||..+|.|.+..+.| +||++.. ..+|+--- ...|.+..+++.+|..|..-|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 356899999999999888877754 5787765 67898443 26789999999999999887764
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.04 E-value=0.29 Score=38.89 Aligned_cols=86 Identities=20% Similarity=0.343 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccccccccCCC
Q psy3497 5 PRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLG 84 (151)
Q Consensus 5 ~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 84 (151)
..+|.+|+.++..+.. +.+. .++++...++.+.. +.....++|.++.+||.++|.+...-++
T Consensus 101 ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~--------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI--------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS---------
T ss_pred HHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc---------
Confidence 4678889998887643 2221 36778888888872 2256789999999999999975322221
Q ss_pred cEEeccCCCCCCc-cCCHHHHHHHHHHhhc
Q psy3497 85 RICLDILKDKWSP-ALQIRTVLLSIQALLS 113 (151)
Q Consensus 85 ~icl~~l~~~W~p-~~~i~~vl~~i~~ll~ 113 (151)
.+...|.+ ..++.+++...+..+.
T Consensus 163 -----~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 -----PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ------HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred -----chhhhhcccccCHHHHHHHHHHHHH
Confidence 11235777 5577777666555543
No 36
>KOG4018|consensus
Probab=86.74 E-value=2.8 Score=31.83 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=37.6
Q ss_pred CCchHHHHHHHHHHhhhCCCCCE-EEEeCCCCCcEEEEEEECCCCCCCCC--cEEEEEEECCCCCCCCCCeEEE
Q psy3497 1 MSALPRRIIKETQRLMQEPVPGI-SAVPDESNARYFHVIVTGPEDSPFEG--GLFKLELFLPEDYPMSAPKVRF 71 (151)
Q Consensus 1 ms~~~kRl~~E~~~l~~~~~~~i-~v~~~~~~~~~w~~~i~Gp~~tpyeg--g~f~~~i~fp~~YP~~pP~v~f 71 (151)
||.. .-...|+..|..--+.-+ .+. +.+...+.++|.- ..+-++. +.+.+.+.++++||..+|.+.+
T Consensus 1 Ms~~-EeQe~E~EaLeSIY~de~~~i~--~~~~~~f~v~iq~-e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 1 MSQY-EEQEEELEALESIYPDEFKHIN--SEDPPIFEVTIQY-EEGENDEPKGSFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred CCcH-HHHHHHHHHHHHhccchhhhhh--ccCCccceeeeec-ccccCCCccccEEEEEEccCCCCCCCcceec
Confidence 5533 334556666665433323 222 2223236666662 2221221 2788999999999999999943
No 37
>KOG0309|consensus
Probab=85.59 E-value=4.3 Score=36.47 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEE-EEEEECCCCCCCC-CCeEEEeec
Q psy3497 5 PRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLF-KLELFLPEDYPMS-APKVRFITK 74 (151)
Q Consensus 5 ~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f-~~~i~fp~~YP~~-pP~v~f~t~ 74 (151)
.+-|.+|+..|-.. -+.+.++-.+-.-..-.+.+-||---. .|.+| ++.|.||.+||.+ +|+++|..+
T Consensus 422 pQnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34455555544432 234444433333456677777654433 55555 8999999999997 799999865
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=77.00 E-value=3.8 Score=29.98 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=23.8
Q ss_pred ecccc---ccccCCCcEEeccCCCCCCccCCHHHHHHHHHHh-hcCC
Q psy3497 73 TKIYH---PNIDRLGRICLDILKDKWSPALQIRTVLLSIQAL-LSAP 115 (151)
Q Consensus 73 t~i~H---pnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~l-l~~p 115 (151)
|+.|| +||+.+|.||+.... .|......-+..+.+. |.++
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 34454 499999999997643 2334334446666544 4444
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=74.90 E-value=9 Score=31.11 Aligned_cols=67 Identities=19% Similarity=0.499 Sum_probs=45.7
Q ss_pred CcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEe-eccccccccCCCcEEeccCCCCCCccC--CHHHHHHHH
Q psy3497 32 ARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFI-TKIYHPNIDRLGRICLDILKDKWSPAL--QIRTVLLSI 108 (151)
Q Consensus 32 ~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-t~i~Hpnv~~~G~icl~~l~~~W~p~~--~i~~vl~~i 108 (151)
...+++.| ||.|...+-+|.|...||..||-+.|- ..-|+|.... +..| .+|.+.- ++..++..+
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHH
Confidence 44666666 599999999999999999999999996 3347884321 1122 4687654 355555555
Q ss_pred HH
Q psy3497 109 QA 110 (151)
Q Consensus 109 ~~ 110 (151)
..
T Consensus 121 ~~ 122 (333)
T PF06113_consen 121 RQ 122 (333)
T ss_pred HH
Confidence 43
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=72.08 E-value=7.1 Score=30.01 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=25.7
Q ss_pred ccccc---cccCCCcEEeccCCCCCCccC-CHHHHHHHHHHhhcCCCCC
Q psy3497 74 KIYHP---NIDRLGRICLDILKDKWSPAL-QIRTVLLSIQALLSAPNPD 118 (151)
Q Consensus 74 ~i~Hp---nv~~~G~icl~~l~~~W~p~~-~i~~vl~~i~~ll~~p~~~ 118 (151)
+.||. ||+.+|+||+.... .|.. ++.+ +....+.|-+-.++
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FT 176 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFT 176 (228)
T ss_pred eeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCccc
Confidence 34554 99999999997654 3433 4555 66776665543333
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=60.99 E-value=15 Score=25.92 Aligned_cols=24 Identities=25% Similarity=0.656 Sum_probs=22.1
Q ss_pred CcEEEEEEECCCCCC-CCCCeEEEe
Q psy3497 49 GGLFKLELFLPEDYP-MSAPKVRFI 72 (151)
Q Consensus 49 gg~f~~~i~fp~~YP-~~pP~v~f~ 72 (151)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 489999999999999 999999886
No 42
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=59.71 E-value=22 Score=28.92 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=22.2
Q ss_pred CcEEEEEEECCCCCCCCCCeEEEee
Q psy3497 49 GGLFKLELFLPEDYPMSAPKVRFIT 73 (151)
Q Consensus 49 gg~f~~~i~fp~~YP~~pP~v~f~t 73 (151)
+-.|-++|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3468899999999999999999986
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=57.72 E-value=18 Score=26.89 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.5
Q ss_pred CcEEEEEEECCCCCCCCCCeEEEee
Q psy3497 49 GGLFKLELFLPEDYPMSAPKVRFIT 73 (151)
Q Consensus 49 gg~f~~~i~fp~~YP~~pP~v~f~t 73 (151)
.|.|.|.=.+|--||.++|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4889999999999999999998873
No 44
>smart00340 HALZ homeobox associated leucin zipper.
Probab=50.61 E-value=17 Score=20.32 Aligned_cols=14 Identities=43% Similarity=0.444 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhC
Q psy3497 5 PRRIIKETQRLMQE 18 (151)
Q Consensus 5 ~kRl~~E~~~l~~~ 18 (151)
.+||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 58999999999864
No 45
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=48.52 E-value=62 Score=20.70 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=28.7
Q ss_pred cEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeccc
Q psy3497 33 RYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIY 76 (151)
Q Consensus 33 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 76 (151)
+.|.+-+.|+.+..-..-+=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 58999999988865444566788899988876 7766666543
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=47.57 E-value=34 Score=24.67 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=22.0
Q ss_pred CcEEEEEEECCCCCC-----CCCCeEEEee
Q psy3497 49 GGLFKLELFLPEDYP-----MSAPKVRFIT 73 (151)
Q Consensus 49 gg~f~~~i~fp~~YP-----~~pP~v~f~t 73 (151)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 388999999999999 7999998863
No 47
>KOG0662|consensus
Probab=44.60 E-value=25 Score=26.65 Aligned_cols=54 Identities=28% Similarity=0.401 Sum_probs=42.5
Q ss_pred CCCCeEEEeeccccccccC--CCcEEeccCCCCC--CccCCHHHHHHHHHHhhcCCCC
Q psy3497 64 MSAPKVRFITKIYHPNIDR--LGRICLDILKDKW--SPALQIRTVLLSIQALLSAPNP 117 (151)
Q Consensus 64 ~~pP~v~f~t~i~Hpnv~~--~G~icl~~l~~~W--~p~~~i~~vl~~i~~ll~~p~~ 117 (151)
.+||.|-|-.+.|...|+- .|.|-..+...+| .|+-.+.+-|..|..++-.|+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcc
Confidence 4799999999999998884 5655555556666 5788899999999998887763
No 48
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=40.92 E-value=1.2e+02 Score=22.01 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhccCC
Q psy3497 101 IRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151 (151)
Q Consensus 101 i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a~~~ 151 (151)
.+.++..++.+..+.-.+.++-.|...+.++-.+.|.+.+++.-.+-+.+|
T Consensus 71 a~~~~~~lkrl~~s~~kg~~ll~EL~~~r~~~~~~lk~~lk~fq~~a~cp~ 121 (160)
T PF15005_consen 71 AWSFKNQLKRLTDSDLKGEPLLKELVWMRQNQKKELKKALKQFQKKACCPN 121 (160)
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 345677888888887777888778888989999999999999988866654
No 49
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=39.44 E-value=49 Score=24.72 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.7
Q ss_pred CcEEEEEEECCCCCCC-----CCCeEEEe
Q psy3497 49 GGLFKLELFLPEDYPM-----SAPKVRFI 72 (151)
Q Consensus 49 gg~f~~~i~fp~~YP~-----~pP~v~f~ 72 (151)
.|.|.|+-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999998 88888775
No 50
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=38.12 E-value=91 Score=20.37 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=20.7
Q ss_pred CCCcEEEEEEECCCCCCCCCCeEEEeec
Q psy3497 47 FEGGLFKLELFLPEDYPMSAPKVRFITK 74 (151)
Q Consensus 47 yegg~f~~~i~fp~~YP~~pP~v~f~t~ 74 (151)
-||..+.|...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45677888888899999 599988865
No 51
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=36.19 E-value=1e+02 Score=18.87 Aligned_cols=42 Identities=26% Similarity=0.315 Sum_probs=31.6
Q ss_pred HHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy3497 107 SIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148 (151)
Q Consensus 107 ~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a 148 (151)
.|+.++..-++..-+.++|...+.+=-+.|...+-.-+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665666778899998888888888888777776665
No 52
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=35.61 E-value=96 Score=19.89 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=21.4
Q ss_pred ChhHHHHHHHHHCHHHHHHHHHHHHHH
Q psy3497 120 PLANDVAELWKVNEAEAIRNAKEWTRK 146 (151)
Q Consensus 120 p~n~eaa~~~~~~~~~f~~~~~~~~~~ 146 (151)
|-..+...++++|+++|....++..+.
T Consensus 4 p~FD~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 4 PDFDELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred CCHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 345678889999999999888777654
No 53
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=34.80 E-value=65 Score=23.87 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.6
Q ss_pred cEEEEEEECCCCCCC-----CCCeEEEe
Q psy3497 50 GLFKLELFLPEDYPM-----SAPKVRFI 72 (151)
Q Consensus 50 g~f~~~i~fp~~YP~-----~pP~v~f~ 72 (151)
|.|.|.-.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 889999999999995 78877665
No 54
>KOG4690|consensus
Probab=34.55 E-value=71 Score=22.74 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCCCCCChhHHH-------HHHHHHCHHHHHHHHHHHHHHhccC
Q psy3497 114 APNPDDPLANDV-------AELWKVNEAEAIRNAKEWTRKYAMD 150 (151)
Q Consensus 114 ~p~~~~p~n~ea-------a~~~~~~~~~f~~~~~~~~~~~a~~ 150 (151)
-|.+++|.|.=. -..|.+|.++|++.-+.-+++||..
T Consensus 77 PPkPEEP~nCC~SGCv~CVWDVY~DdLEdYN~~r~~a~~~i~~~ 120 (165)
T KOG4690|consen 77 PPKPEEPDNCCMSGCVNCVWDVYSDDLEDYNHRRKEAAEKIAGT 120 (165)
T ss_pred CCCCCCcccchhhccceeehHhhHHHHHHHHHHHHHHHHHhccc
Confidence 366777777633 2789999999999999999999864
No 55
>KOG4445|consensus
Probab=34.41 E-value=51 Score=26.63 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=22.1
Q ss_pred cEEEEEEECCCCCCCCCCeEEEeec
Q psy3497 50 GLFKLELFLPEDYPMSAPKVRFITK 74 (151)
Q Consensus 50 g~f~~~i~fp~~YP~~pP~v~f~t~ 74 (151)
-.+.+.+..+..||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4577889999999999999999877
No 56
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.34 E-value=2.3e+02 Score=26.31 Aligned_cols=65 Identities=18% Similarity=0.379 Sum_probs=39.9
Q ss_pred ccccCCCcEEeccCCCCCCccCCHHHHHHHHHHh-----hcCCCCCCC-hhHHHH--HHHH------H--CHHHHHHHHH
Q psy3497 78 PNIDRLGRICLDILKDKWSPALQIRTVLLSIQAL-----LSAPNPDDP-LANDVA--ELWK------V--NEAEAIRNAK 141 (151)
Q Consensus 78 pnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~l-----l~~p~~~~p-~n~eaa--~~~~------~--~~~~f~~~~~ 141 (151)
|||. |.+.+.... .+|+.++|..-+.| |--|-.++. +-.++. +++. . ++++|.+++.
T Consensus 42 PNVT--G~LHmGHAl-----~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~w 114 (877)
T COG0525 42 PNVT--GSLHMGHAL-----NYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCW 114 (877)
T ss_pred CCCC--Ccccchhhh-----hHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Confidence 6664 555553221 36777888777776 334555544 333333 2221 1 5999999999
Q ss_pred HHHHHhcc
Q psy3497 142 EWTRKYAM 149 (151)
Q Consensus 142 ~~~~~~a~ 149 (151)
+|.+++..
T Consensus 115 eWk~e~~~ 122 (877)
T COG0525 115 EWKEESGG 122 (877)
T ss_pred HHHHHHHH
Confidence 99998863
No 57
>KOG3285|consensus
Probab=33.07 E-value=89 Score=23.29 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhhhCCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeE
Q psy3497 4 LPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKV 69 (151)
Q Consensus 4 ~~kRl~~E~~~l~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v 69 (151)
..+||++|++.+.++--..++..|.-+..-.+.+.+..-.+ ...|.++-.+-|++
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD-----------~~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD-----------TEVPEKWDESGPKL 174 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC-----------ccCCcchhcCCCeE
Confidence 36899999999999877778888876766777777764333 35677776666654
No 58
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=30.93 E-value=34 Score=26.65 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=21.3
Q ss_pred HHHHHH-CHHHHHHHHHHHHHHhccCC
Q psy3497 126 AELWKV-NEAEAIRNAKEWTRKYAMDN 151 (151)
Q Consensus 126 a~~~~~-~~~~f~~~~~~~~~~~a~~~ 151 (151)
-..|.+ +++.|++++++++++.|..|
T Consensus 214 W~~Y~~~E~~lF~~~~~eHA~~lA~~n 240 (251)
T PF14798_consen 214 WSIYIEKEQELFDETAKEHARKLAERN 240 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367766 68889999999999999754
No 59
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=30.29 E-value=72 Score=25.13 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy3497 121 LANDVAELWKVNEAEAIRNAKEWTRKYA 148 (151)
Q Consensus 121 ~n~eaa~~~~~~~~~f~~~~~~~~~~~a 148 (151)
.+.+|+..|..|++.|...+.+.+++.+
T Consensus 239 ~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 239 SSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 5689999999999999999999988754
No 60
>KOG0177|consensus
Probab=30.03 E-value=30 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCcEEeccCCCCCCccCCHHHHHHHHHHhh
Q psy3497 83 LGRICLDILKDKWSPALQIRTVLLSIQALL 112 (151)
Q Consensus 83 ~G~icl~~l~~~W~p~~~i~~vl~~i~~ll 112 (151)
.+.+|++++...|+|.+|+++.+.-++..+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 467999999999999999887766555443
No 61
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=28.09 E-value=1.4e+02 Score=25.27 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=11.8
Q ss_pred EEEEEECCCCCCCC
Q psy3497 52 FKLELFLPEDYPMS 65 (151)
Q Consensus 52 f~~~i~fp~~YP~~ 65 (151)
..+.++||.+|+..
T Consensus 211 k~i~vtFP~dy~a~ 224 (441)
T COG0544 211 KDIKVTFPEDYHAE 224 (441)
T ss_pred eEEEEEcccccchh
Confidence 44889999999986
No 62
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.88 E-value=1e+02 Score=24.10 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=36.5
Q ss_pred CCCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy3497 94 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148 (151)
Q Consensus 94 ~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a 148 (151)
-|....++..+...|..-|.. +.++-+..|++|.+.|.++.++.-+++.
T Consensus 123 iWldp~n~~~~a~~I~~~L~~------~dP~~~~~y~~N~~~~~~~L~~l~~~~~ 171 (286)
T cd01019 123 LWLSPENAAEVAQAVAEKLSA------LDPDNAATYAANLEAFNARLAELDATIK 171 (286)
T ss_pred cCCCHHHHHHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777788888888888876 3345567899999999988876655543
No 63
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=26.75 E-value=2e+02 Score=21.86 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHhhh---CCCCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCC-----------------
Q psy3497 3 ALPRRIIKETQRLMQ---EPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDY----------------- 62 (151)
Q Consensus 3 ~~~kRl~~E~~~l~~---~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~Y----------------- 62 (151)
+.+.||.+.++++++ ..+.| |.+.+....+.-| || |.+-+.|.++=
T Consensus 9 s~~eR~~e~~~~~k~~L~~a~~G------------W~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS 74 (235)
T PF14135_consen 9 SPAERINEALAEYKKILTSAPNG------------WKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTS 74 (235)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCc------------eEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeE
Confidence 457899887777765 33334 5555552221223 22 55555554432
Q ss_pred --C---CCCCeEEEeec--cccccccCCC
Q psy3497 63 --P---MSAPKVRFITK--IYHPNIDRLG 84 (151)
Q Consensus 63 --P---~~pP~v~f~t~--i~Hpnv~~~G 84 (151)
- ..-|.+.|.|- +.|-..++.+
T Consensus 75 ~Y~~~~~~gp~LsFdTyN~~iH~~s~p~~ 103 (235)
T PF14135_consen 75 SYRLKQDQGPVLSFDTYNEYIHYFSDPSN 103 (235)
T ss_pred EEEEecCCceEEEEEeCCceEEEccCCCc
Confidence 1 22388888764 5777666643
No 64
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=25.83 E-value=1.1e+02 Score=21.43 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=16.9
Q ss_pred CCCCCcEEEEEEECCCCCCCC
Q psy3497 28 DESNARYFHVIVTGPEDSPFE 48 (151)
Q Consensus 28 ~~~~~~~w~~~i~Gp~~tpye 48 (151)
.+.|...|.+++.|++||+..
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred cCCCCcceEEEEECCCCccee
Confidence 367788899999999988654
No 65
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=25.68 E-value=50 Score=19.88 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhhC
Q psy3497 5 PRRIIKETQRLMQE 18 (151)
Q Consensus 5 ~kRl~~E~~~l~~~ 18 (151)
.+||++||+++--.
T Consensus 36 r~rL~kEL~d~D~~ 49 (59)
T PF12065_consen 36 RQRLRKELQDMDMC 49 (59)
T ss_pred HHHHHHHHHHcccc
Confidence 47999999988643
No 66
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.00 E-value=88 Score=23.06 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=32.9
Q ss_pred CCccCCHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHH
Q psy3497 95 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRK 146 (151)
Q Consensus 95 W~p~~~i~~vl~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~ 146 (151)
|.....+..+...|..-|..-+| +-++.|++|.+.|.++.++-.++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~l~~l~~~ 156 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDP------SEQEEYKENLRVFLAKLNKLLRE 156 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 87777788888888888877433 33667888888888776655443
No 67
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=24.81 E-value=1.8e+02 Score=21.10 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHHHHhhhCC----CCCEEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeec
Q psy3497 8 IIKETQRLMQEP----VPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITK 74 (151)
Q Consensus 8 l~~E~~~l~~~~----~~~i~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 74 (151)
.-+|+..+.... -.|+.+. +.+.=...+++.-|.-.|- --...+++.| .||-..||.|.|+.+
T Consensus 10 FdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 10 FDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 445666555332 1455543 2333344455554555552 2234566777 789999999999987
No 68
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=23.80 E-value=1.3e+02 Score=23.03 Aligned_cols=24 Identities=21% Similarity=0.630 Sum_probs=20.7
Q ss_pred CcEEEEEEECCCCCCC-------CCCeEEEe
Q psy3497 49 GGLFKLELFLPEDYPM-------SAPKVRFI 72 (151)
Q Consensus 49 gg~f~~~i~fp~~YP~-------~pP~v~f~ 72 (151)
.|.|.|.-..|--||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999975 79999885
No 69
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=23.70 E-value=1.2e+02 Score=18.01 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHCHHHHHHHHH
Q psy3497 121 LANDVAELWKVNEAEAIRNAK 141 (151)
Q Consensus 121 ~n~eaa~~~~~~~~~f~~~~~ 141 (151)
-|++.+++..+|+++|.....
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHCHHHHHHHHc
Confidence 478999999999999988654
No 70
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=23.60 E-value=1.2e+02 Score=24.07 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=20.5
Q ss_pred CcEEEEEEECCCCCC------------------CCCCeEEEe
Q psy3497 49 GGLFKLELFLPEDYP------------------MSAPKVRFI 72 (151)
Q Consensus 49 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 72 (151)
.|.|.|.-..|.-|| .+||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 388999999999997 578888886
No 71
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=22.82 E-value=1.9e+02 Score=17.47 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy3497 120 PLANDVAELWKVNEAEAIRNAKEWTRKYA 148 (151)
Q Consensus 120 p~n~eaa~~~~~~~~~f~~~~~~~~~~~a 148 (151)
.++.+++..+.++-+.|.+.+-+-+.+|+
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999988888888877776
No 72
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=22.34 E-value=1.4e+02 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.624 Sum_probs=20.9
Q ss_pred CcEEEEEEECCCCCCC-------CCCeEEEe
Q psy3497 49 GGLFKLELFLPEDYPM-------SAPKVRFI 72 (151)
Q Consensus 49 gg~f~~~i~fp~~YP~-------~pP~v~f~ 72 (151)
.|.|.|.-..|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999986 89999885
No 73
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=22.18 E-value=1.4e+02 Score=23.69 Aligned_cols=24 Identities=25% Similarity=0.706 Sum_probs=20.7
Q ss_pred CcEEEEEEECCCCCC------------------CCCCeEEEe
Q psy3497 49 GGLFKLELFLPEDYP------------------MSAPKVRFI 72 (151)
Q Consensus 49 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 72 (151)
.|.|.|.-..|.-|| .+||.|.|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 488999999999999 478888876
No 74
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=21.97 E-value=78 Score=27.11 Aligned_cols=26 Identities=38% Similarity=0.832 Sum_probs=19.3
Q ss_pred CCCcEEEEEEECCCC-----CCCCCCeEEEeecccccccc
Q psy3497 47 FEGGLFKLELFLPED-----YPMSAPKVRFITKIYHPNID 81 (151)
Q Consensus 47 yegg~f~~~i~fp~~-----YP~~pP~v~f~t~i~Hpnv~ 81 (151)
-.||.|.+++.+.+| ||. .||||+-+
T Consensus 356 ~~~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 386 (489)
T TIGR01239 356 RRDGKYELDLVLRDNQTSEEYPD---------GIFHPHQD 386 (489)
T ss_pred ecCCceEEEEEeecCCCccccCC---------ccccCcHh
Confidence 568899999998554 555 38999644
No 75
>KOG3696|consensus
Probab=21.74 E-value=2e+02 Score=23.32 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=27.9
Q ss_pred CCCCcEE-EEEEEC-----CCCCCCCCCeEEEeeccccccccCCCcEE
Q psy3497 46 PFEGGLF-KLELFL-----PEDYPMSAPKVRFITKIYHPNIDRLGRIC 87 (151)
Q Consensus 46 pyegg~f-~~~i~f-----p~~YP~~pP~v~f~t~i~Hpnv~~~G~ic 87 (151)
-|+-|.+ -++..| -++=+...|.|.|.-.+|||||-+.-+.-
T Consensus 283 ~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~~r~~ 330 (334)
T KOG3696|consen 283 CWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPAERQA 330 (334)
T ss_pred cccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccccccc
Confidence 3554544 344443 34455668999999999999998754443
No 76
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=21.55 E-value=1.5e+02 Score=23.59 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=20.1
Q ss_pred CcEEEEEEECCCCCC------------------CCCCeEEEe
Q psy3497 49 GGLFKLELFLPEDYP------------------MSAPKVRFI 72 (151)
Q Consensus 49 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 72 (151)
.|.|.|.-..|..|| ..||.|.|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 488999999998887 578888876
No 77
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=20.88 E-value=2.1e+02 Score=17.45 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=27.7
Q ss_pred HHHHhhcCCCCCCChhHHHHHHHHHCHHHHHHHHHHHHHHhc
Q psy3497 107 SIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148 (151)
Q Consensus 107 ~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~~~a 148 (151)
.|+.++..-++..-+.+++.++..+=.+.|...+-..+-+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777888889999988888877788877766655554
No 78
>KOG1047|consensus
Probab=20.76 E-value=98 Score=27.17 Aligned_cols=30 Identities=33% Similarity=0.724 Sum_probs=24.9
Q ss_pred CCCCCCcEEEEEEECCCCCCCC---CCeEEEeec
Q psy3497 44 DSPFEGGLFKLELFLPEDYPMS---APKVRFITK 74 (151)
Q Consensus 44 ~tpyegg~f~~~i~fp~~YP~~---pP~v~f~t~ 74 (151)
.+||.=|.|-+ +.+|..||+. -|-++|.|+
T Consensus 247 ~GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 247 FGPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred cCCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 35787788886 6689999996 599999998
No 79
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=20.27 E-value=1.6e+02 Score=23.41 Aligned_cols=24 Identities=17% Similarity=0.570 Sum_probs=20.1
Q ss_pred CcEEEEEEECCCCCC------------------CCCCeEEEe
Q psy3497 49 GGLFKLELFLPEDYP------------------MSAPKVRFI 72 (151)
Q Consensus 49 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 72 (151)
.|.|.|.-..|.-|| ..||.|.|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 388999999999997 578888775
No 80
>KOG2851|consensus
Probab=20.11 E-value=2.5e+02 Score=23.36 Aligned_cols=33 Identities=27% Similarity=0.575 Sum_probs=25.0
Q ss_pred cccC-CCcEEeccCC---CCCCccC--CHHHHHHHHHHh
Q psy3497 79 NIDR-LGRICLDILK---DKWSPAL--QIRTVLLSIQAL 111 (151)
Q Consensus 79 nv~~-~G~icl~~l~---~~W~p~~--~i~~vl~~i~~l 111 (151)
.|.+ +|+||..+=- +...|.. +|.+++..|.++
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 4555 8999997642 5566655 799999999888
Done!