RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3497
(151 letters)
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 274 bits (702), Expect = 2e-96
Identities = 125/150 (83%), Positives = 138/150 (92%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
+ LPRRIIKETQRL+ EPVPGI A PDESNARYFHV++ GP+DSPFEGG FKLELFLPE+
Sbjct: 4 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 63
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YPM+APKVRF+TKIYHPN+D+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL
Sbjct: 64 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
ANDVAE WK NEA+AI A+ WTR YAM+N
Sbjct: 124 ANDVAEQWKTNEAQAIETARAWTRLYAMNN 153
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 272 bits (699), Expect = 3e-96
Identities = 98/149 (65%), Positives = 120/149 (80%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDY 62
+PRRI KETQ L EP PGI AVP N R+F++++ GP+ +P+EGG +KLELFLPE Y
Sbjct: 1 GIPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 63 PMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
PM PKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL
Sbjct: 61 PMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLD 120
Query: 123 NDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
+ VAE +K ++ +A A++W + YA +N
Sbjct: 121 SKVAEHFKQDKNDAEHVARQWNKIYANNN 149
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 268 bits (688), Expect = 2e-94
Identities = 103/150 (68%), Positives = 125/150 (83%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
++LP+RIIKET++L+ +PVPGI+A P + N RYF V + GPE SP+E G+F+LEL+LP+D
Sbjct: 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YPM APKVRF+TKIYHPNIDRLGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 64 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 123
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
ANDVAE W NE A A+EWT+ YA
Sbjct: 124 ANDVAEDWIKNEQGAKAKAREWTKLYAKKK 153
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 263 bits (674), Expect = 1e-91
Identities = 68/148 (45%), Positives = 89/148 (60%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
+S +RI KE + +P P SA P N + + GP S +EGG+F L++
Sbjct: 46 LSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTP 105
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
+YP PKV F T+IYH NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DP
Sbjct: 106 EYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 165
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYA 148
L +A + N AE R A++WT++YA
Sbjct: 166 LVGSIATQYMTNRAEHDRMARQWTKRYA 193
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 261 bits (670), Expect = 1e-91
Identities = 56/147 (38%), Positives = 82/147 (55%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
+ R + KE L +P GI P+E + V + GPE +P+ GGLF+++L L +D
Sbjct: 12 PHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKD 71
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
+P S PK F+TKI+HPN+ G IC+++LK W+ L IR VLL+I+ LL PNP+ L
Sbjct: 72 FPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESAL 131
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYA 148
+ L N E A+ T +
Sbjct: 132 NEEAGRLLLENYEEYAARARLLTEIHG 158
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 261 bits (668), Expect = 2e-91
Identities = 70/144 (48%), Positives = 95/144 (65%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+RI KE Q L ++P SA P + ++ + GP +SP++GG+F L + P DYP
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 67 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + A+EWT+KYAM
Sbjct: 127 ARIYKTDRERYNQLAREWTQKYAM 150
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 261 bits (669), Expect = 3e-91
Identities = 73/147 (49%), Positives = 95/147 (64%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
+RI KE L ++P SA P + ++ + GPEDSP+ GG+F L + P D
Sbjct: 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSD 79
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP PKV F TKIYHPNI+ G ICLDILKD+WSPAL I VLLSI +LL+ PNPDDPL
Sbjct: 80 YPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPL 139
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYA 148
++A L+K + + A+EW++KYA
Sbjct: 140 VPEIAHLYKSDRMRYDQTAREWSQKYA 166
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 261 bits (668), Expect = 3e-91
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
++ +R+ +E + L+ PGI+A PD N + + GP+D+ +E +KL L P
Sbjct: 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
DYP P V+F T +HPN+D+ G ICLDILK+ W+ + +RT+LLS+Q+LL PN P
Sbjct: 67 DYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASP 126
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
L A++W N+ E + E + D
Sbjct: 127 LNAQAADMWS-NQTEYKKVLHEKYKTAQSD 155
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 259 bits (665), Expect = 1e-90
Identities = 72/148 (48%), Positives = 96/148 (64%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
S +RI KE L ++P SA P + ++ + GP DSP++GG+F L + P D
Sbjct: 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 77
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL
Sbjct: 78 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 137
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAM 149
++A ++K + + R A+EWT+KYAM
Sbjct: 138 VPEIARIYKTDREKYNRIAREWTQKYAM 165
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 260 bits (665), Expect = 5e-90
Identities = 71/151 (47%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
S R+ KE + + E V I A +SN + + GPE +P+EGG F L + +P D
Sbjct: 22 SKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPND 81
Query: 62 YPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
YP + PK++F+TKI+HPNI + G ICLD+LK++WSPAL IRT LLSIQALLS P PDDP
Sbjct: 82 YPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDP 141
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
+VA+++K N A ++ A WT+ +A
Sbjct: 142 QDAEVAKMYKENHALFVKTASVWTKTFATGP 172
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 257 bits (658), Expect = 1e-89
Identities = 69/155 (44%), Positives = 95/155 (61%), Gaps = 5/155 (3%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
M R+ +E L EP PGI+ D+ + G ++P+E G+FKLE+ +PE
Sbjct: 3 MQRA-SRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPN 116
YP P++RF+T IYHPNID GRICLD+L K W P+L I TVL SIQ L+S PN
Sbjct: 62 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN 121
Query: 117 PDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
PDDPL D++ +K N+ ++NA++WT K+A
Sbjct: 122 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 156
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 255 bits (654), Expect = 3e-89
Identities = 65/145 (44%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+R KE + + I + N + GP D+P+EGG ++LE+ +PE YP +
Sbjct: 14 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 73
Query: 66 APKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
PKVRFITKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A PDDP
Sbjct: 74 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAV 133
Query: 125 VAELWKVNEAEAIRNAKEWTRKYAM 149
VA +K N + A+ W YA
Sbjct: 134 VANQYKQNPEMFKQTARLWAHVYAG 158
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 250 bits (640), Expect = 1e-86
Identities = 60/148 (40%), Positives = 80/148 (54%), Gaps = 1/148 (0%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
+ +R+ +E LM GISA P+ N + + G + +E +KL L P
Sbjct: 29 GPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSG 88
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP +AP V+F+T YHPN+D G I LDILK+KWS +RT+LLSIQ+LL PN D PL
Sbjct: 89 YPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPL 148
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAM 149
AELWK N + +E K
Sbjct: 149 NTHAAELWK-NPTAFKKYLQETYSKQVT 175
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 248 bits (636), Expect = 1e-85
Identities = 58/152 (38%), Positives = 93/152 (61%), Gaps = 2/152 (1%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
S+ +RI+KE Q + +P I+ ES+ + GP +P+EGG F +++ +P
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 61 DYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 119
+YP PK++F TK+YHPNI + G ICLDIL++ WSP + +++ L+S+QALL +P P+D
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 120 PLANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
P +VA+ + + + A WTR YA +
Sbjct: 121 PQDAEVAQHYLRDRESFNKTAALWTRLYASET 152
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 246 bits (630), Expect = 1e-85
Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
+ +RI+KE Q + +P I+ ES+ + GP +P+EGG F +++ +P +
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60
Query: 62 YPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
YP PK++F TK+YHPNI + G ICLDILK+ WSP + +++ L+S+QALL +P P+DP
Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120
Query: 121 LANDVAELWKVNEAEAIRNAKEWTRKYA 148
+VA+ + + + A WTR YA
Sbjct: 121 QDAEVAQHYLRDRESFNKTAALWTRLYA 148
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 245 bits (626), Expect = 2e-84
Identities = 64/159 (40%), Positives = 92/159 (57%), Gaps = 14/159 (8%)
Query: 6 RRIIKETQRLMQ-------------EPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLF 52
R++KE + Q G+SA + + + GP +P+EGG F
Sbjct: 35 ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHF 94
Query: 53 KLELFLPEDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQAL 111
L++ +P DYP + PK++F+TKI+HPNI + G ICLDILK +WSPAL IRT LLSIQA+
Sbjct: 95 TLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAM 154
Query: 112 LSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
L+ P P DP +VA++ N ++ AK WT +A +
Sbjct: 155 LADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKE 193
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 245 bits (626), Expect = 2e-84
Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Query: 1 MSALP----RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLEL 56
M+ + +R KE + + I + N + GP D+P+EGG ++LE+
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 57 FLPEDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLSIQALLSAP 115
+PE YP + PKVRFITKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 121
Query: 116 NPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAM 149
PDDP VA +K N + A+ W YA
Sbjct: 122 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 155
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 241 bits (618), Expect = 9e-84
Identities = 43/148 (29%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+ ++ + + G + + + F V+ GP + +EGG++K+ + LP+DYP +
Sbjct: 2 TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFA 61
Query: 66 APKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLAN 123
+P + F+ K+ HPN+D G +CLD++ W+P + V + + LL+ PNP DPL +
Sbjct: 62 SPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNS 121
Query: 124 DVAELWKVNEAEAIRNAKEWTRKYAMDN 151
D A L ++ KE+ + YA +
Sbjct: 122 DAASLLMKDKNIYEEKVKEYVKLYASKD 149
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 242 bits (619), Expect = 1e-82
Identities = 65/145 (44%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+R KE + + I + N + GP D+P+EGG ++LE+ +PE YP +
Sbjct: 63 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 122
Query: 66 APKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
PKVRFITKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A PDDP
Sbjct: 123 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAV 182
Query: 125 VAELWKVNEAEAIRNAKEWTRKYAM 149
VA +K N + A+ W YA
Sbjct: 183 VANQYKQNPEMFKQTARLWAHVYAG 207
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 236 bits (603), Expect = 2e-81
Identities = 52/152 (34%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLP 59
M+A RR++KE + + + + + DE+N + ++ P++ P++ G F++E+ P
Sbjct: 1 MAAS-RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFP 58
Query: 60 EDYPMSAPKVRFITKIYHPNIDRLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPD 118
+YP PK+ F TKIYHPNID G++CL ++ + W PA + V+ S+ AL++ P P+
Sbjct: 59 AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 118
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
PL D+AE + + + +NA+E+T+KY
Sbjct: 119 HPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 236 bits (604), Expect = 2e-81
Identities = 54/152 (35%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 1 MSAL-PRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLP 59
MS RR++++ +R+ ++ PG+SA P N ++ ++ GP D+P+E G F+L L
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 60 EDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 119
E+YP P V+F+++++HPN+ G ICLDIL+++W+P + ++L SIQ+L + PNP
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 120
Query: 120 PLANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
P + A L+K ++++ ++ KE K D+
Sbjct: 121 PANVEAATLFKDHKSQYVKRVKETVEKSWEDD 152
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 234 bits (600), Expect = 5e-81
Identities = 57/152 (37%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 1 MSAL-PRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLP 59
MS +R++++ +RL Q+P GIS P ++N ++ ++ GP+D+P++GG FKL L
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 60 EDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 119
EDYP P VRF+++++HPNI G ICLDIL+++WSP + +L SIQ+LL PNP+
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 120 PLANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
P ++ A ++ ++ E R ++ + +
Sbjct: 121 PANSEAARMYSESKREYNRRVRDVVEQSWTAD 152
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 234 bits (599), Expect = 7e-81
Identities = 49/147 (33%), Positives = 85/147 (57%), Gaps = 3/147 (2%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPM 64
R++KE + L ++P P + + D++N +H ++ P+ P+ F L + P +YP
Sbjct: 7 MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPF 65
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 123
P ++F TKIYHPN+D G+ICL I+ + W P + VL ++ L++ PN +PL
Sbjct: 66 KPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRM 125
Query: 124 DVAELWKVNEAEAIRNAKEWTRKYAMD 150
D+A+L N +NA+E+T ++ +D
Sbjct: 126 DLADLLTQNPELFRKNAEEFTLRFGVD 152
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 234 bits (599), Expect = 2e-80
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVP-----DESNARYFHVIVTGPEDSPFEGGLFKLE 55
+SA R+ ++ L P ++ + D S + VIV P++ + G
Sbjct: 27 LSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIV-RPDEGYYNYGSINFN 85
Query: 56 LFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 115
L E YP+ PKV + KI+HPNID G +CL+IL++ WSPAL +++++ + L P
Sbjct: 86 LDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEP 145
Query: 116 NPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
NP+DPL D A+L E E + ++++
Sbjct: 146 NPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSIEH 181
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 231 bits (592), Expect = 2e-79
Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
S RR+ + +L++ F V GP+ +P+EGG++K+ + LP+
Sbjct: 24 SPGKRRMDTDVIKLIESKHEVTIL----GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79
Query: 62 YPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDD 119
YP +P + F+ KI+HPNID G +CLD++ W+ + + S + LL+ PNP D
Sbjct: 80 YPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPID 139
Query: 120 PLANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
PL D A ++ E + KE+ +KYA +
Sbjct: 140 PLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 171
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 229 bits (587), Expect = 6e-79
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
SA RI K+ L IS D + F +++ P++ ++ G F + +
Sbjct: 5 SAAQLRIQKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 62
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP PKV+ T +YHPNID G +CL+IL++ W P L I +++ +Q L PNP+DPL
Sbjct: 63 YPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPL 122
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
+ AE+ + N +N + R + +
Sbjct: 123 NKEAAEVLQNNRRLFEQNVQRSMRGGYIGS 152
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 229 bits (585), Expect = 2e-78
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
SA RI K+ L IS D + F +++ P++ ++ G F + +
Sbjct: 25 SAAQLRIQKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 82
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP PKV+ T +YHPNID G + L+IL++ W P L I +++ +Q L PNP+DPL
Sbjct: 83 YPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPL 142
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
+ AE+ + N +N + R + +
Sbjct: 143 NKEAAEVLQNNRRLFEQNVQRSMRGGYIGS 172
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 223 bits (570), Expect = 3e-76
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLP 59
+S + ++KE L D + F + V P++ ++GG F+ E +P
Sbjct: 12 VSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVP 70
Query: 60 EDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK------WSPALQIRTVLLSIQALLS 113
+ Y M PKV+ +TKI+HPNI G ICL +L++ W+P ++ V+ + +L +
Sbjct: 71 DAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 130
Query: 114 -APNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
N DDPL + AE ++ + ++ ++YA
Sbjct: 131 DLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 222 bits (567), Expect = 6e-76
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 1 MSALP-RRIIKETQRLMQEPVPGISAVP-----DESNARYFHVIVTGPEDSPFEGGLFKL 54
MS + R+ +E + ++ G AVP N + + G + +P+EGGLFKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 55 ELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDILKD--KWSPALQIRTVLLSIQALL 112
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 113 SAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAM 149
+ PN P + ++ N E + + +K+A
Sbjct: 124 NEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 230 bits (587), Expect = 7e-76
Identities = 70/146 (47%), Positives = 94/146 (64%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+RI KE L ++P SA P + ++ + GP DSP++GG+F L + P DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 66 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 126 AELWKVNEAEAIRNAKEWTRKYAMDN 151
A ++K + + R A+EWT+KYAM
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAMGG 151
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 220 bits (563), Expect = 3e-75
Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 1 MSAL-PRRIIKETQRLMQEPVPGISAVP-----DESNARYFHVIVTGPEDSPFEGGLFKL 54
MS+L +R+ +E ++ ++ G A P + + + + G E + + GG++ +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 55 ELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDILKD--KWSPALQIRTVLLSIQALL 112
+ P +YP PKV+F YHPN+ G ICL IL + W PA+ ++ ++L +Q LL
Sbjct: 61 TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120
Query: 113 SAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
+PNP+ P + N+AE + ++Y+
Sbjct: 121 DSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 219 bits (561), Expect = 7e-75
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
RR + RL P + F V GPE +P+E G + L + LP DYP
Sbjct: 15 RRREMDYMRLCNST---RKVYPSD-TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFK 70
Query: 66 APKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLAN 123
+P + F +I HPN+D R G +CLD++ W+P Q+ + + + LL PNP DPL
Sbjct: 71 SPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNV 130
Query: 124 DVAELWKVNEAEAIRNAKEWTRKYAM 149
A L + +E +A
Sbjct: 131 QAAHLLHADRVGFDALLREHVSTHAT 156
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 216 bits (552), Expect = 2e-73
Identities = 37/143 (25%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+ ++ L + GI+A P + + V + G ++S ++G +F+L + +Y +
Sbjct: 26 LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 85
Query: 66 APKVRFITKIYHPNID-RLGRICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
P V+FIT +HPN+D G+ C+D L +KW+ + ++LL++Q +LS P ++P+
Sbjct: 86 PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVN 145
Query: 123 NDVAELWKVNEAEAIRNAKEWTR 145
+ A + +E+ + + R
Sbjct: 146 LEAARILVKDESLYRTILRLFNR 168
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 214 bits (548), Expect = 7e-73
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 8/156 (5%)
Query: 1 MSAL-PRRIIKETQRLMQEPVPGISAVPDES-----NARYFHVIVTGPEDSPFEGGLFKL 54
S+L R+ +E ++ ++ G A P +S + + V + G + +EGGL+KL
Sbjct: 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 66
Query: 55 ELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALL 112
+ PE+YP PK RF ++HPN+ G +CL IL ++ W PA+ I+ +LL IQ LL
Sbjct: 67 TMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 126
Query: 113 SAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
PN P + ++K ++ E + + R+ A
Sbjct: 127 DDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 210 bits (537), Expect = 3e-71
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 14/161 (8%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
+R++ E ++L P GI A P +E N + ++ GPED+ FE G+F L P
Sbjct: 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPL 61
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLS 107
DYP+S PK+RF +++HPNI GR+C+ IL ++WSP + +LLS
Sbjct: 62 DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 121
Query: 108 IQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
+ ++L+ PN + D +++W+ + + + AK+ +K
Sbjct: 122 VVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSL 162
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 210 bits (537), Expect = 4e-71
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
+ + ++ E + L +EPV G DE + + V + GP ++ +EGG FK L P
Sbjct: 6 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPI 65
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLS 107
DYP S P RF+TK++HPNI G +C+ IL ++W+P +RT+LLS
Sbjct: 66 DYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 125
Query: 108 IQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
+ +LL+ PN P D + +++ + E+ +E+T
Sbjct: 126 VISLLNEPNTFSPANVDASVMYRKWK-ESKGKDREYTDIIRKQ 167
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 208 bits (532), Expect = 2e-70
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 2 SALPRRIIKETQRLMQE---------PVPGI--SAVP-DESNARYFHVIVTGPEDSPFEG 49
RI+KE + +++ P GI S P DE++ + I++GP D+P+E
Sbjct: 5 DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYEN 64
Query: 50 GLFKLELFLPEDYPMSAPKVRFI-TKIYHPNID-RLGRICLDILK-DKWSPALQIRTVLL 106
F++ + +P YPM+ PK+ F+ I H N+ G ICL+ILK ++W+P + +
Sbjct: 65 HQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVH 124
Query: 107 SIQALLSAPNPDDPLANDVAELWKVNEAEAI-RNAKEWTRKYAMDN 151
++ LL P D PL D+ + + + A K + + N
Sbjct: 125 AVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERERIN 170
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 206 bits (527), Expect = 3e-70
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
M RI KE + P + +N R + V G E++ + ++KL++ P+
Sbjct: 4 MGNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPD 63
Query: 61 DYPMSAPKVRFITK-IYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 119
DYP+ P V F+ K H ++ G ICL +L D ++P+L I ++LSI ++LS+
Sbjct: 64 DYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 202 bits (516), Expect = 2e-68
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
+ RI KE ++ P + SN R + V G E++ + ++K+++ P+
Sbjct: 18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPD 77
Query: 61 DYPMSAPKVRFITK-IYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 117
+YP+ P V F+ K H ++ G ICL +L D ++P+L I ++LSI ++LS+
Sbjct: 78 NYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 203 bits (517), Expect = 4e-68
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 20/162 (12%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLP 59
+ + ++ L + PV G SA D+++ + V++ GP D+ +EGG+FK L P
Sbjct: 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFP 74
Query: 60 EDYPMSAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLL 106
+DYP+ PK++FIT+I+HPN+D+ G +C+ IL +++W P + T+++
Sbjct: 75 KDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMI 134
Query: 107 SIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
S+ ++L+ PN D P D A+ W+ + E+ RK A
Sbjct: 135 SVISMLADPNGDSPANVDAAKEWREDR------NGEFKRKVA 170
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 202 bits (515), Expect = 7e-68
Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 1 MSAL-PRRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFL 58
MS +R++KE Q+L+++ PGI A P E+N + ++ GP D+P+ G+F +L
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 59 PEDYPMSAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVL 105
P+DYP+S PK+ F I HPNI G +C+ IL +++WSP + +L
Sbjct: 61 PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 120
Query: 106 LSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRK 146
LS+ ++LS PN + D LW+ N E R K K
Sbjct: 121 LSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK 161
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 197 bits (502), Expect = 6e-66
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 17/157 (10%)
Query: 2 SALPRRIIKETQRLMQE------------PVPGISAVPDESNARYFHVIVTGPEDSPF-- 47
+ +RIIK+ + L++E P D + + V P DS +
Sbjct: 7 NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGG 66
Query: 48 EGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLS 107
G ++L + +DYP P VRF+T +Y P + G IC ++ D W+P V+
Sbjct: 67 AGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKL 126
Query: 108 IQALLSA---PNPDDPLANDVAELWKVNEAEAIRNAK 141
+ + + DD + + + + +
Sbjct: 127 VLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 191 bits (487), Expect = 5e-64
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPD--ESNARYFHVIVTGPEDSPFEGGLFKLELFL 58
M+++ +R+ KE L +P PG++ +++ + V + G + +EG F+L
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 59 PEDYPMSAPKVRFITK--IYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLS 113
YP +P+V F + HP++ G ICL IL + WSPAL +++V LSI ++LS
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 184 bits (468), Expect = 7e-61
Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 6 RRIIKETQRLMQEPVPGISAVP----DESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
R+++E + + G + ++ + ++ GP + +E ++ L++
Sbjct: 28 FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 87
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRI----CLDILKDKWSPALQIRTVLLSIQALLSAPNP 117
YP + P VRF+TKI ++ + + +L KW + I+ VL ++ L+ +
Sbjct: 88 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKEN 146
Query: 118 DDPLANDVAELWK 130
+ +
Sbjct: 147 MKLPQPPEGQCYS 159
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 184 bits (469), Expect = 1e-60
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
+ +R+ ++ R+ ++PVP I A P SN +H +V GPE +P+EGG + +L P +
Sbjct: 13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPRE 72
Query: 62 YPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
+P P + IT + RL D D W+PA + T+L + + + P
Sbjct: 73 FPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132
Query: 121 L---ANDVAELWKVNEAEAIRNAKEWTR 145
++ V K +
Sbjct: 133 SIETSDFTKRQLAVQSLAFNLKDKVFCE 160
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 177 bits (452), Expect = 1e-58
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 1 MSALPR--RIIKETQRLMQEPVPG-ISAVP---DESNARYFHVIVTGPEDSPFEGGLFKL 54
MS +PR R+++E ++ + P S D+ ++ + GP S E ++ L
Sbjct: 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61
Query: 55 ELFLPEDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDK-WSPALQIRTVLLSIQALL 112
+ +YP S PKV FI+KI P ++ G + D + W A + T+LL ++ +
Sbjct: 62 SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM 121
Query: 113 SAPNPDDPLANDVAEL 128
+ P E
Sbjct: 122 ATPANKKLRQPKEGET 137
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 177 bits (452), Expect = 2e-58
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
Query: 1 MSALPR--RIIKETQRLMQEPVP-GISA---VPDESNARYFHVIVTGPEDSPFEGGLFKL 54
+PR R++ E +R + V G+S D+ + + G + FE ++ L
Sbjct: 17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSL 76
Query: 55 ELFLPEDYPMSAPKVRFITKIYHPNIDRLGRIC---LDILKDKWSPALQIRTVLLSI-QA 110
+F ++YP S P V+F TKI +D GR+ L ILK+ W+ I T+L+S+ Q
Sbjct: 77 TIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQE 135
Query: 111 LLSAPNPDDPLANDVAELWKVN 132
+LS+ N P + E++ N
Sbjct: 136 MLSSANKRLP-QPNEGEVYSNN 156
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 177 bits (450), Expect = 4e-58
Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 6 RRIIKETQRLMQEPVPGISAVP----DESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
R+++E + + G + ++ + ++ GP + +E ++ L++
Sbjct: 38 FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 97
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRI----CLDILKDKWSPALQIRTVLLSIQALLSAPNP 117
YP + P VRF+TKI ++ + + +L KW + I+ VL ++ L+ +
Sbjct: 98 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKEN 156
Query: 118 DDPLANDVAELWK 130
+ +
Sbjct: 157 MKLPQPPEGQCYS 169
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 157 bits (398), Expect = 2e-48
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 21/169 (12%)
Query: 2 SALPRRIIKETQRLMQEP----VPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELF 57
+A RR+ +E L + DE V++TGP D+P+ G F+ +++
Sbjct: 75 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVY 134
Query: 58 LPEDYPMSAPKVRFITKIYH-----PNIDRLGRICLDILK-------DKWSPALQ-IRTV 104
P+DYP S P V T H PN+ G++CL IL +KW+P V
Sbjct: 135 FPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQV 194
Query: 105 LLSIQALLSAPNP--DDPLANDV--AELWKVNEAEAIRNAKEWTRKYAM 149
L+S+Q+L+ P ++P + E N ++ T K+AM
Sbjct: 195 LVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAM 243
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 127 bits (321), Expect = 3e-38
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 21/141 (14%)
Query: 6 RRIIKETQRLMQEPVPGISAV---PDESNARYFH---VIVTGPEDSPFEGGL-------- 51
R++KE + + + + + + DSP L
Sbjct: 30 DRLMKELRDIYRSQSYKTGIYSVELINDS--LYDWHVKLQKVDPDSPLHSDLQILKEKEG 87
Query: 52 ---FKLELFLPEDYPMSAPKVRFITKIYHPN-IDRLGRICLDIL-KDKWSPALQIRTVLL 106
L +++P P VR + + + G +C+++L K WS A I +V++
Sbjct: 88 IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIM 147
Query: 107 SIQALLSAPNPDDPLANDVAE 127
I A L + +
Sbjct: 148 QINATLVKGKARVQFGANKNQ 168
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 45.3 bits (107), Expect = 6e-07
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 39 VTGPEDSPFEGGLFK--LELFLPEDYPMSAPKVR-FITKIY----HPNIDRLGRICLDIL 91
+TG P+ G + + L+L + YP + P T ++D G+I L L
Sbjct: 56 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYL 115
Query: 92 KDKWSPALQIRTVLLSIQALLSAPNP 117
+ P + ++ + + P
Sbjct: 116 HEWKHPQSDLLGLIQVMIVVFGDEPP 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 2e-04
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 45/133 (33%)
Query: 1 M---SALPR----RIIKET-QRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLF 52
M S L + + +T L IS V N +++V+GP S L+
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV----NGAK-NLVVSGPPQS-----LY 387
Query: 53 KLELFL-----PEDY-----PMSAPKVRF------ITKIYH-----PNIDRLGRICLDIL 91
L L L P P S K++F + +H P D I D++
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD---LINKDLV 444
Query: 92 KD--KWSPA-LQI 101
K+ ++ +QI
Sbjct: 445 KNNVSFNAKDIQI 457
Score = 33.9 bits (77), Expect = 0.015
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 34/132 (25%)
Query: 6 RRIIK---ETQRLMQEPVPGI--SAVPDESNARYFHVIVT----GPEDSPFEGGLFKLEL 56
+ +IK + + + P SA+ ++ G D FE EL
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE------EL 173
Query: 57 FLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVL---LSIQALLS 113
R + + YH + L + + L + L V L+I L
Sbjct: 174 -------------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 114 APN--PDDP-LA 122
P+ PD L
Sbjct: 221 NPSNTPDKDYLL 232
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.030
Identities = 24/174 (13%), Positives = 49/174 (28%), Gaps = 42/174 (24%)
Query: 5 PRRIIKETQRLMQ-EPVPGI---------------SAVPDES--NARYFHV--IVTGPED 44
+ +K Q L++ P + F + + +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 45 SPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPN---IDRLGRI--------CLDILKD 93
SP E L L+ L + P + + I L R+ CL +L +
Sbjct: 194 SP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 94 KWSP------ALQIRTVLL----SIQALLSAPNPDDPLANDVAELWKVNEAEAI 137
+ L + +L + LSA + + +E +++
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 31.5 bits (71), Expect = 0.064
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 54 LELFLPEDYPMSAPKVRFITKIY-----------HPNIDRLGRICLDILKDKWSP 97
+ +++P YP+ P + + + ID G I L IL W P
Sbjct: 85 VIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDP 138
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 28.8 bits (64), Expect = 0.42
Identities = 12/54 (22%), Positives = 17/54 (31%)
Query: 29 ESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDR 82
N F + VT E L+ E YP AP ++ + D
Sbjct: 34 SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDV 87
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell
DIV cell inner membrane, cell membrane, cell shape; HET:
SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Length = 542
Score = 29.5 bits (67), Expect = 0.44
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 22/114 (19%)
Query: 4 LPRRIIKET-QRLMQEPVPGISAVPDESNARYF-------HVI-VTGPEDSPFEGGLFKL 54
+ R++ + + + + + R++ HVI T + EG L
Sbjct: 100 IKRQLDPKVAEEVKALGLENFVFEKELK--RHYPMGNLFAHVIGFTDIDGKGQEG----L 153
Query: 55 ELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSI 108
EL L ED + + DR G I + + + ++LS+
Sbjct: 154 ELSL-EDSLYGEDGAEVVLR------DRQGNIVDSLDSPRNKAPQNGKDIILSL 200
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 28.4 bits (62), Expect = 1.2
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 17 QEPVPGISAV---PDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDY 62
Q P+P + + PD S + + E SP+E G+ K F+ D
Sbjct: 323 QCPLPLFTCLHVKPDVSELMFADWV----EFSPYEIGMAKYGTFMAPDL 367
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL
conjugation pathway, ligase; 1.60A {Homo sapiens} PDB:
2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Length = 172
Score = 27.2 bits (60), Expect = 2.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 13/46 (28%)
Query: 52 FKLELFLPEDYPMSAPKVRFITKIYHPNID-------RLGRICLDI 90
F +E +P YP +AP++ P +D R G+ICL
Sbjct: 85 FDIEFDIPITYPTTAPEIAV------PELDGKTAKMYRGGKICLTD 124
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation
pathway, ligase, structural genomics, PSI; 2.20A
{Leishmania major}
Length = 168
Score = 26.8 bits (59), Expect = 2.2
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 13/46 (28%)
Query: 52 FKLELFLPEDYPMSAPKVRFITKIYHPNID-------RLGRICLDI 90
F++ +P YP + P++ P ++ R G+IC+
Sbjct: 87 FEMNFDIPVTYPQAPPEIAL------PELEGKTVKMYRGGKICMTT 126
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.3
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 16/32 (50%)
Query: 74 KIYHPNIDRLGRICLDILKDKWSPALQIR-TV 104
K+Y D +PAL I+ T+
Sbjct: 30 KLYAD--------------DS-APALAIKATM 46
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral
protein; HET: CIT; 1.67A {Sulfolobus islandicus
rudivirus 1 variorganism_taxid}
Length = 100
Score = 26.2 bits (57), Expect = 2.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 16 MQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKL 54
MQ VP +AV ++ +A +TGP + ++G K+
Sbjct: 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKV 39
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 26.3 bits (58), Expect = 2.7
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 38 IVTGPEDSPFEGGLFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK 94
I T E +L LP +YP P + N ++L R +K+K
Sbjct: 44 IHTKAEGFMDADIPLELVFHLPVNYPSCLPGISI-------NSEQLTRAQCVTVKEK 93
>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure
initiative, structural genomics, midwest for structural
genomics (MCSG); 1.90A {Shigella flexneri 2a str}
Length = 382
Score = 26.2 bits (58), Expect = 5.4
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 78 PNI-DRLGRICLD-ILK----DKWSPALQ--------IRTVLLSIQALLSAPNPDDPLAN 123
P + D + R+ + K D+ L + ++ I + + DDP A
Sbjct: 284 PYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYSLPHKNLIQGIAGAMHFRSEDDPQAQ 343
Query: 124 DVAELWKVNEAEA 136
++A L +A
Sbjct: 344 ELAALIADKGPQA 356
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 26.0 bits (56), Expect = 6.6
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 53 KLELFLPEDYPMSAPKVRFI--TKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQA 110
KL + P +++ ++ I T+ L W + I LL +
Sbjct: 233 KLTIADPF-ACIASMSLKIIGPTEEVARLRHVLSDGL-----SNWDSEMNIHKNLLRMFD 286
Query: 111 LLSAPNPDDPLANDVAE 127
L P PD + E
Sbjct: 287 LCYFPMPDWSDGPKLDE 303
>1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose;
HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP:
b.29.1.19 b.67.2.3 PDB: 1uyp_A*
Length = 432
Score = 25.3 bits (56), Expect = 9.9
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 3 ALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLEL 56
+LPR + E L +PV + A+ + F +G + +++
Sbjct: 278 SLPRELYVENNELKVKPVDELLALRKR---KVFETAKSGTFLLDVKENSYEIVC 328
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.414
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,440,300
Number of extensions: 140352
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 72
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)