RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3497
(151 letters)
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 165 bits (419), Expect = 3e-54
Identities = 124/149 (83%), Positives = 137/149 (91%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
+ LPRRIIKETQRL+ EPVPGI A PDESNARYFHV++ GP+DSPFEGG FKLELFLPE+
Sbjct: 1 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 60
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YPM+APKVRF+TKIYHPN+D+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL
Sbjct: 61 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 120
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
ANDVAE WK NEA+AI A+ WTR YAM+
Sbjct: 121 ANDVAEQWKTNEAQAIETARAWTRLYAMN 149
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 160 bits (406), Expect = 4e-52
Identities = 103/148 (69%), Positives = 125/148 (84%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
++LP+RIIKET++L+ +PVPGI+A P + N RYF V + GPE SP+E G+F+LEL+LP+D
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YPM APKVRF+TKIYHPNIDRLGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAM 149
ANDVAE W NE A A+EWT+ YA
Sbjct: 122 ANDVAEDWIKNEQGAKAKAREWTKLYAK 149
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 156 bits (395), Expect = 2e-50
Identities = 70/144 (48%), Positives = 95/144 (65%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+RI KE Q L ++P SA P + ++ + GP +SP++GG+F L + P DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 126 AELWKVNEAEAIRNAKEWTRKYAM 149
A ++K + + A+EWT+KYAM
Sbjct: 124 ARIYKTDRERYNQLAREWTQKYAM 147
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 154 bits (391), Expect = 7e-50
Identities = 68/143 (47%), Positives = 87/143 (60%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+RI KE + +P P SA P N + + GP S +EGG+F L++ DYP
Sbjct: 5 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 64
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PKV F T+IYH NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL +
Sbjct: 65 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 124
Query: 126 AELWKVNEAEAIRNAKEWTRKYA 148
A + N AE R A++WT++YA
Sbjct: 125 ATQYMTNRAEHDRMARQWTKRYA 147
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 149 bits (377), Expect = 9e-48
Identities = 52/146 (35%), Positives = 94/146 (64%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
RR++++ +R+ ++ PG+SA P N ++ ++ GP D+P+E G F+L L E+YP
Sbjct: 6 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
P V+F+++++HPN+ G ICLDIL+++W+P + ++L SIQ+L + PNP P +
Sbjct: 66 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEA 125
Query: 126 AELWKVNEAEAIRNAKEWTRKYAMDN 151
A L+K ++++ ++ KE K D+
Sbjct: 126 ATLFKDHKSQYVKRVKETVEKSWEDD 151
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 146 bits (368), Expect = 3e-46
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 14/159 (8%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPM 64
+ K+ + + PV G SA D+++ + V+V GP D+ +EGG FK L P DYP
Sbjct: 3 LLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQ 62
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDILKD-------------KWSPALQIRTVLLSIQAL 111
PK++FI++I+HPNID+ G +C+ IL D +W P + T+LLS+ ++
Sbjct: 63 KPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISM 122
Query: 112 LSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
L+ PN + P D A++ + N AE + + R+ +
Sbjct: 123 LTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQEE 161
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 139 bits (350), Expect = 1e-43
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
R++KE + L ++P P + + + + P+ P+ F L + P +YP
Sbjct: 3 MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFK 62
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKW-SPALQIRTVLLSIQALLSAPNPDDPLAND 124
P ++F TKIYHPN+D G+ICL I+ + P + VL ++ L++ PN +PL D
Sbjct: 63 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 122
Query: 125 VAELWKVNEAEAIRNAKEWTRKYAMD 150
+A+L N +NA+E+T ++ +D
Sbjct: 123 LADLLTQNPELFRKNAEEFTLRFGVD 148
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 138 bits (348), Expect = 3e-43
Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
++ +R+ +E + L+ PGI+A PD N + + GP+D+ +E +KL L P D
Sbjct: 8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP P V+F T +HPN+D+ G ICLDILK+ W+ + +RT+LLS+Q+LL PN PL
Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPL 127
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
A++W N+ E + E + D
Sbjct: 128 NAQAADMWS-NQTEYKKVLHEKYKTAQSD 155
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 137 bits (346), Expect = 4e-43
Identities = 60/143 (41%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+R+ +E LM GISA P+ N + + G + +E +KL L P YP +
Sbjct: 4 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 63
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
AP V+F+T YHPN+D G I LDILK+KWS +RT+LLSIQ+LL PN D PL
Sbjct: 64 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHA 123
Query: 126 AELWKVNEAEAIRNAKEWTRKYA 148
AELWK N + +E K
Sbjct: 124 AELWK-NPTAFKKYLQETYSKQV 145
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 138 bits (347), Expect = 4e-43
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 14/157 (8%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPM 64
+R++KE Q+L+++ PGI A P E+N + ++ GP D+P+ G+F +L P+DYP+
Sbjct: 6 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 65
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 111
S PK+ F I HPNI G +C+ IL +++WSP + +LLS+ ++
Sbjct: 66 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 125
Query: 112 LSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
LS PN + D LW+ N E R K K
Sbjct: 126 LSEPNIESGANIDACILWRDNRPEFERQVKLSILKSL 162
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 137 bits (345), Expect = 8e-43
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDES-----NARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
R+ +E + ++ G AVP ++ N + + G + +P+EGGLFKL + +
Sbjct: 5 SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 64
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPD 118
DYP S PK +F ++HPN+ G + L IL++ W PA+ I+ +LL IQ LL+ PN
Sbjct: 65 DYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQ 124
Query: 119 DPLANDVAELWKVNEAEAIRNAKEWTRKYAM 149
DP + ++ N E + + +K+A
Sbjct: 125 DPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 155
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 136 bits (343), Expect = 2e-42
Identities = 69/154 (44%), Positives = 95/154 (61%), Gaps = 5/154 (3%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPE 60
M R+ +E L EP PGI+ D+ + G ++P+E G+FKLE+ +PE
Sbjct: 1 MQRA-SRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 59
Query: 61 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKD----KWSPALQIRTVLLSIQALLSAPN 116
YP P++RF+T IYHPNID GRICLD+LK W P+L I TVL SIQ L+S PN
Sbjct: 60 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN 119
Query: 117 PDDPLANDVAELWKVNEAEAIRNAKEWTRKYAMD 150
PDDPL D++ +K N+ ++NA++WT K+A
Sbjct: 120 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 153
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 136 bits (343), Expect = 2e-42
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 2 SALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
SA RI K+ L IS D + F +++ P++ ++ G F + +
Sbjct: 2 SAAQLRIQKDINELNLPKTCDIS-FSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 59
Query: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
YP PKV+ T +YHPNID G +CL+IL++ W P L I +++ +Q L PNP+DPL
Sbjct: 60 YPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPL 119
Query: 122 ANDVAELWKVNEAEAIRNAKEWTRKYAMDN 151
+ AE+ + N +N + R + +
Sbjct: 120 NKEAAEVLQNNRRLFEQNVQRSMRGGYIGS 149
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 136 bits (342), Expect = 2e-42
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 6 RRIIKETQRLMQEPVPGISA-VPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPM 64
+RI+KE Q + +P I+ ES+ + GP +P+EGG F +++ +P +YP
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 65 SAPKVRFITKIYHPNIDRLGRI-CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 123
PK++F TK+YHPNI + CLDILK+ WSP + +++ L+S+QALL +P P+DP
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 124 DVAELWKVNEAEAIRNAKEWTRKYA 148
+VA+ + + + A WTR YA
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYA 148
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 135 bits (341), Expect = 3e-42
Identities = 55/141 (39%), Positives = 90/141 (63%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
RR++++ ++L ++P G+S P E N + I+ GP+++PFE G FKL L E+YP
Sbjct: 6 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 65
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 66 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 125
Query: 126 AELWKVNEAEAIRNAKEWTRK 146
A+L++ N E + ++ +
Sbjct: 126 AQLYQENRREYEKRVQQIVEQ 146
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 133 bits (335), Expect = 2e-41
Identities = 56/142 (39%), Positives = 81/142 (57%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
R + KE L +P GI P+E + V + GPE +P+ GGLF+++L L +D+P S
Sbjct: 9 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 68
Query: 66 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
PK F+TKI+HPN+ G IC+++LK W+ L IR VLL+I+ LL PNP+ L +
Sbjct: 69 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 128
Query: 126 AELWKVNEAEAIRNAKEWTRKY 147
L N E A+ T +
Sbjct: 129 GRLLLENYEEYAARARLLTEIH 150
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 130 bits (328), Expect = 9e-41
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 1 MSALPRRIIKETQRLMQEPVPGISA--VPDESNARYFHVIVTGPEDSPFEGGLFKLELFL 58
M+++ +R+ KE L +P PG++ +++ + V + G + +EG F+L
Sbjct: 1 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 60
Query: 59 PEDYPMSAPKVRFITKI--YHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLS 113
YP +P+V F + HP++ G ICL IL + WSPAL +++V LSI ++LS
Sbjct: 61 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 130 bits (328), Expect = 2e-40
Identities = 50/144 (34%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
Query: 6 RRIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPM 64
RR++KE + + + + + DE+N + ++ P++ P++ G F++E+ P +YP
Sbjct: 2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 60
Query: 65 SAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 123
PK+ F TKIYHPNID G++CL ++ + W PA + V+ S+ AL++ P P+ PL
Sbjct: 61 KPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 120
Query: 124 DVAELWKVNEAEAIRNAKEWTRKY 147
D+AE + + + +NA+E+T+KY
Sbjct: 121 DLAEEYSKDRKKFCKNAEEFTKKY 144
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 131 bits (329), Expect = 3e-40
Identities = 64/157 (40%), Positives = 91/157 (57%), Gaps = 14/157 (8%)
Query: 6 RRIIKETQRLMQE-------------PVPGISAVPDESNARYFHVIVTGPEDSPFEGGLF 52
R++KE + Q G+SA + + + GP +P+EGG F
Sbjct: 4 ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHF 63
Query: 53 KLELFLPEDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQAL 111
L++ +P DYP + PK++F+TKI+HPNI + G ICLDILK +WSPAL IRT LLSIQA+
Sbjct: 64 TLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAM 123
Query: 112 LSAPNPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
L+ P P DP +VA++ N ++ AK WT +A
Sbjct: 124 LADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 160
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 128 bits (321), Expect = 3e-39
Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 5/153 (3%)
Query: 1 MSALP-RRIIKETQRLMQ---EPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLEL 56
M+ + +RI +E + +++ I + N + GP D+P+EGG ++LE+
Sbjct: 1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60
Query: 57 FLPEDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 115
+PE YP + PKVRFITKI+HPNI G ICLDILKD+W+ A+ +RTVLLS+QALL+A
Sbjct: 61 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120
Query: 116 NPDDPLANDVAELWKVNEAEAIRNAKEWTRKYA 148
PDDP VA +K N + A+ W YA
Sbjct: 121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 121 bits (305), Expect = 8e-37
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+R+ ++ R+ ++PVP I A P SN +H +V GPE +P+EGG + +L P ++P
Sbjct: 4 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 63
Query: 66 APKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
P + IT + RL D D W+PA + T+L + + + P
Sbjct: 64 PPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIET 123
Query: 125 VAELWKVNEAEAI---RNAKEWTRKYA 148
+ +++ K + +
Sbjct: 124 SDFTKRQLAVQSLAFNLKDKVFCELFP 150
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 120 bits (302), Expect = 1e-36
Identities = 41/123 (33%), Positives = 75/123 (60%), Gaps = 14/123 (11%)
Query: 7 RIIKETQRLMQEPVPGISAVP-DESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+ ++ L + PV G SA D+++ + V++ GP D+ +EGG+FK L P+DYP+
Sbjct: 3 LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 62
Query: 66 APKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQALL 112
PK++FIT+I+HPN+D+ G +C+ IL +++W P + T+++S+ ++L
Sbjct: 63 PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML 122
Query: 113 SAP 115
+ P
Sbjct: 123 ADP 125
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 120 bits (301), Expect = 4e-36
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
RR + RL P ++ F V GPE +P+E G + L + LP DYP
Sbjct: 3 RRREMDYMRLCNST---RKVYPSDTV-AEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFK 58
Query: 66 APKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRT-VLLSIQALLSAPNPDDPLAN 123
+P + F +I HPN+D R G +CLD++ W+P Q+ + + LL PNP DPL
Sbjct: 59 SPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNV 118
Query: 124 DVAELWKVNEAEAIRNAKEWTRKYAM 149
A L + +E +A
Sbjct: 119 QAAHLLHADRVGFDALLREHVSTHAT 144
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 119 bits (298), Expect = 9e-36
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
RR+ + +L++ V F V GP+ +P+EGG++K+ + LP+ YP
Sbjct: 6 RRMDTDVVKLIESKHE----VTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFK 61
Query: 66 APKVRFITKIYHPNIDRLGRIC-LDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLAN 123
+P + F+ KI+HPNID LD++ W+ + + S + LL+ PNP DPL
Sbjct: 62 SPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNG 121
Query: 124 DVAELWKVNEAEAIRNAKEWTRKYAMDN 151
D A ++ E + KE+ +KYA +
Sbjct: 122 DAAAMYLHRPEEYKQKIKEYIQKYATEE 149
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 117 bits (295), Expect = 2e-35
Identities = 36/141 (25%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMS 65
+ ++ L + GI+A P + + V + G ++S ++G +F+L + +Y +
Sbjct: 7 LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 66
Query: 66 APKVRFITKIYHPNID-RLGRICLDILK--DKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
P V+FIT +HPN+D G+ C+D L +KW+ + ++LL++Q +LS P ++P+
Sbjct: 67 PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVN 126
Query: 123 NDVAELWKVNEAEAIRNAKEW 143
+ A + +E+ + +
Sbjct: 127 LEAARILVKDESLYRTILRLF 147
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 116 bits (291), Expect = 3e-35
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 7 RIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDYPMSA 66
RI KE + P + +N R + V G E++ + ++KL++ P+DYP+
Sbjct: 2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61
Query: 67 PKVRFITKI-YHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLS 113
P V F+ K H ++ G ICL +L D ++P+L I ++LSI ++LS
Sbjct: 62 PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 109
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 109 bits (273), Expect = 5e-32
Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 6 RRIIKETQRLMQEPVPGISAVP----DESNARYFHVIVTGPEDSPFEGGLFKLELFLPED 61
R+++E + + G + ++ + ++ GP + +E ++ L++
Sbjct: 8 FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 67
Query: 62 YPMSAPKVRFITKIYHPNID----RLGRICLDILKDKWSPALQIRTVLLSIQALLSAP-N 116
YP + P VRF+TKI ++ + + +L KW + I+ VL ++ L+ + N
Sbjct: 68 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKEN 126
Query: 117 PDDPLAND 124
P +
Sbjct: 127 MKLPQPPE 134
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 103 bits (259), Expect = 6e-30
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
Query: 6 RRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKL--ELFLPEDYP 63
R L ++ P + + + + +TG P+ G + + L+L + YP
Sbjct: 20 VRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYP 79
Query: 64 MSAPKVRFITK-----IYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 117
+ P ++D G+I L L + P + ++ + + P
Sbjct: 80 YNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 138
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 99.3 bits (247), Expect = 3e-28
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 2 SALPR--RIIKETQRLMQEPVPGISAV----PDESNARYFHVIVTGPEDSPFEGGLFKLE 55
S +PR R+++E ++ + P + D+ ++ + GP S E ++ L
Sbjct: 1 SKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLS 60
Query: 56 LFLPEDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDK-WSPALQIRTVLLSIQALLS 113
+ +YP S PKV FI+KI P ++ G + D + W A + T+LL ++ ++
Sbjct: 61 IDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMA 120
Query: 114 APNPDDP 120
P
Sbjct: 121 TPANKKL 127
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 93.1 bits (231), Expect = 1e-25
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 21/133 (15%)
Query: 5 PRRIIKETQRLMQ-----EPVPGISAVPDESNARYFHVIVTGPEDSPFEGGL---FKLEL 56
R ++ L+ P + D + + G + +G + +
Sbjct: 21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSI--YGTISTGEDGSSPHSIPVIM 78
Query: 57 FLPEDYPMSAPKVRFITK-----------IYHPNIDRLGRICLDILKDKWSPALQIRTVL 105
++P YP+ P + + ID G I L IL A+ + V+
Sbjct: 79 WVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVV 138
Query: 106 LSIQALLSAPNPD 118
+ +LL P D
Sbjct: 139 QELMSLLHEPPQD 151
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 83.0 bits (204), Expect = 1e-21
Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 18/148 (12%)
Query: 6 RRIIKETQRLMQEPVPG---ISAVPDESNARYFHVIVTG-PEDSPFEGGL---------- 51
R++KE + + + S + +HV + DSP L
Sbjct: 7 DRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIE 66
Query: 52 -FKLELFLPEDYPMSAPKVRFITKIY-HPNIDRLGRICLDIL-KDKWSPALQIRTVLLSI 108
L +++P P VR + + + G +C+++L K WS A I +V++ I
Sbjct: 67 YILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQI 126
Query: 109 QALLSAPNPDDPLANDVAELWKVNEAEA 136
A L + + + + A+
Sbjct: 127 NATLVKGKARVQFGANKNQ-YNLARAQQ 153
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 28.2 bits (63), Expect = 0.27
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 13/46 (28%)
Query: 52 FKLELFLPEDYPMSAPKVRFITKIYHPNID-------RLGRICLDI 90
F +E +P YP +AP++ P +D R G+ICL
Sbjct: 78 FDIEFDIPITYPTTAPEIAV------PELDGKTAKMYRGGKICLTD 117
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 26.1 bits (57), Expect = 2.0
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 17 QEPVPGISAV---PDESNARYFHVIVTGPEDSPFEGGLFKLELFLPEDY 62
Q P+P + + PD S + + E SP+E G+ K F+ D
Sbjct: 182 QCPLPLFTCLHVKPDVSELMFADWV----EFSPYEIGMAKYGTFMAPDL 226
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 25.4 bits (54), Expect = 2.6
Identities = 3/26 (11%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 120 PLANDVAELWK--VNEAEAIRNAKEW 143
P +A W ++ + +
Sbjct: 12 PNGLGLAPYWSAVLDGRHGLGPVTRF 37
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 24.6 bits (52), Expect = 6.3
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 120 PLANDVAELWK--VNEAEAIRNAKEW 143
+ N+ E+ I ++E
Sbjct: 14 SIGNNQQEVLASLREGRSGITFSQEL 39
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 24.5 bits (52), Expect = 7.0
Identities = 4/26 (15%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 120 PLANDVAELWK--VNEAEAIRNAKEW 143
P+ N + + W+ + I +
Sbjct: 14 PIGNTLQDYWQGLMEGRNGIGPITRF 39
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 24.3 bits (52), Expect = 7.7
Identities = 3/26 (11%), Positives = 7/26 (26%), Gaps = 2/26 (7%)
Query: 120 PLANDVAELWK--VNEAEAIRNAKEW 143
P+ K + +R +
Sbjct: 14 PIGVGQEAFHKAQLAGKSGVRPITRF 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.414
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 596,595
Number of extensions: 27298
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 39
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)