BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3498
         (81 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WII|A Chain A, Solution Structure Of Rsgi Ruh-025, A Duf701 Domain From
          Mouse Cdna
          Length = 85

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 49/58 (84%)

Query: 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWVDA 77
          L+ QF CPFCNHEKSC+VKMD+ RN+  I+C VCLE+FQT I +LSE +DVY+DW+DA
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDA 77


>pdb|1WJP|A Chain A, Solution Structure Of Zf-C2h2 Domains From Human Zinc
          Finger Protein 295
          Length = 107

 Score = 25.8 bits (55), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 19/59 (32%)

Query: 26 CPFCN-----------HEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYND 73
          CP+C+           HE  CE K        ++ C  C+  F+++ +     ++V+N 
Sbjct: 45 CPYCSLRFFSPELKQEHESKCEYK--------KLTCLECMRTFKSSFSIWRHQVEVHNQ 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,948,443
Number of Sequences: 62578
Number of extensions: 55535
Number of successful extensions: 109
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 2
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)