BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3498
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8MQI6|ELOF1_DROME Transcription elongation factor 1 homolog OS=Drosophila
melanogaster GN=CG40228 PE=1 SV=1
Length = 82
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MGRRKSKRKPPPKRKNIEPLD QFNCPFCNHEKSCEVKMDK RN+A+I CRVCLEDFQT
Sbjct: 1 MGRRKSKRKPPPKRKNIEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTG 60
Query: 61 INFLSEAIDVYNDWVDA 77
INFLSE IDVYNDWVDA
Sbjct: 61 INFLSEPIDVYNDWVDA 77
>sp|Q9U501|ELOF1_MANSE Transcription elongation factor 1 homolog OS=Manduca sexta PE=3
SV=1
Length = 82
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 67/77 (87%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MGRRKSKRKPPPKRK IEPLD QFNCPFCNHEKSCEVKMD+ +N+A I C VCLEDF TT
Sbjct: 1 MGRRKSKRKPPPKRKAIEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTT 60
Query: 61 INFLSEAIDVYNDWVDA 77
N LSE IDVYNDWVDA
Sbjct: 61 TNVLSEPIDVYNDWVDA 77
>sp|Q9XVZ8|ELOF1_CAEEL Transcription elongation factor 1 homolog OS=Caenorhabditis
elegans GN=Y54G11A.11 PE=3 SV=1
Length = 84
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 63/77 (81%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MG+RKSKRK P K K + PLD QFNCPFCNHE+ CEVKMD+ +N I+CRVC EDFQT
Sbjct: 1 MGKRKSKRKAPTKAKAVMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTN 60
Query: 61 INFLSEAIDVYNDWVDA 77
IN+LSE IDVY+DWVDA
Sbjct: 61 INYLSEPIDVYSDWVDA 77
>sp|P60003|ELOF1_MOUSE Transcription elongation factor 1 homolog OS=Mus musculus
GN=Elof1 PE=1 SV=1
Length = 83
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWVDA 77
L+ QF CPFCNHEKSC+VKMD+ RN+ I+C VCLE+FQT I +LSE +DVY+DW+DA
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDA 77
>sp|P60002|ELOF1_HUMAN Transcription elongation factor 1 homolog OS=Homo sapiens
GN=ELOF1 PE=2 SV=1
Length = 83
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWVDA 77
L+ QF CPFCNHEKSC+VKMD+ RN+ I+C VCLE+FQT I +LSE +DVY+DW+DA
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDA 77
>sp|A4IFR3|ELOF1_BOVIN Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1
PE=2 SV=1
Length = 83
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWVDA 77
L+ QF CPFCNHEKSC+VKMD+ RN+ I+C VCLE+FQT I +LSE +DVY+DW+DA
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDA 77
>sp|Q8LHP0|ELOF1_ORYSJ Transcription elongation factor 1 homolog OS=Oryza sativa subsp.
japonica GN=Os07g0631100 PE=3 SV=1
Length = 89
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MG+RKS KPPPK++ ++ LD F+CPFCNH S E ++D +CR+C E+F TT
Sbjct: 1 MGKRKSAAKPPPKKR-MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTT 59
Query: 61 INFLSEAIDVYNDWVD 76
+N L+E ID+Y++W+D
Sbjct: 60 VNALTEPIDIYSEWID 75
>sp|Q8LEF3|ELOF1_ARATH Transcription elongation factor 1 homolog OS=Arabidopsis thaliana
GN=At5g46030 PE=2 SV=1
Length = 120
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MG+RKS+ KP P K ++ LD F+CPFCNH S E +D + ACR+C E F TT
Sbjct: 1 MGKRKSRAKPAPT-KRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTT 59
Query: 61 INFLSEAIDVYNDWVD 76
I L+EAID+Y++W+D
Sbjct: 60 ITALTEAIDIYSEWID 75
>sp|P36053|ELF1_YEAST Transcription elongation factor 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1
Length = 145
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MG+RK + P KR ++ LD +FNC FCNHEKS +DK + ++C++C + FQT
Sbjct: 1 MGKRKKSTRKPTKRL-VQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTR 59
Query: 61 INFLSEAIDVYNDWVDA 77
IN LS+ +DVY+DW DA
Sbjct: 60 INSLSQPVDVYSDWFDA 76
>sp|O13868|ELOF1_SCHPO Transcription elongation factor 1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B3.02c PE=1
SV=1
Length = 107
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MG+RK+K K PKR+ PLD F C FCNHEKS +DK + C++C + Q
Sbjct: 1 MGKRKAKAKVKPKRR-APPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCL 59
Query: 61 INFLSEAIDVYNDWVDA 77
I LS IDVY+DW+DA
Sbjct: 60 ITALSAPIDVYSDWIDA 76
>sp|Q54KR5|ELOF1_DICDI Transcription elongation factor 1 homolog OS=Dictyostelium
discoideum GN=elof1 PE=3 SV=1
Length = 80
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MG+RKS KPPPK K ++ L F+C FC H +S + +D+ CRVC ++T
Sbjct: 1 MGKRKSS-KPPPK-KVVQKLPKHFDCLFCAHSQSVDCILDRELGKGVAKCRVCNASYETP 58
Query: 61 INFLSEAIDVYNDWVDA 77
I+ LS+AIDVY+DW+DA
Sbjct: 59 IHELSDAIDVYSDWIDA 75
>sp|Q8STS7|ELOF1_ENCCU Transcription elongation factor 1 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU09_0850 PE=3 SV=2
Length = 80
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1 MGRRKSKRKPP-PKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59
MGRR+ KR+ PKR++ L+ +FNCP CNHE + + K C VC F
Sbjct: 1 MGRRRVKRRINIPKRQS--RLEKRFNCPVCNHENVVQCTVKKTLMKGFANCSVCEASFAC 58
Query: 60 TINFLSEAIDVYNDWVD 76
N L+ IDVY+ WVD
Sbjct: 59 DANKLTTGIDVYSAWVD 75
>sp|Q0IAP2|HSLO_SYNS3 33 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=hslO PE=3
SV=1
Length = 301
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 9 KPPPKRKNIEPLDIQFNCPFCNHEKSCEV----------KMDKGRNSARIACRVCLEDFQ 58
+P P + ++P IQF+CP C+ E+S KM K A + C C E ++
Sbjct: 232 QPIPVGEPLQP--IQFSCP-CSRERSINALRLFGKEELNKMLKEDKGAELTCHFCSEVYK 288
Query: 59 TTINFLSEAID 69
LSE I+
Sbjct: 289 VDEKELSELIN 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,385,167
Number of Sequences: 539616
Number of extensions: 1019352
Number of successful extensions: 2404
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2386
Number of HSP's gapped (non-prelim): 16
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)