Query psy3498
Match_columns 81
No_of_seqs 100 out of 191
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:14:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wii_A Hypothetical UPF0222 pr 100.0 2.5E-45 8.5E-50 235.2 8.2 80 2-81 2-81 (85)
2 1vq8_Z 50S ribosomal protein L 96.1 0.0028 9.7E-08 39.6 2.4 44 21-70 25-68 (83)
3 1pft_A TFIIB, PFTFIIBN; N-term 96.1 0.0033 1.1E-07 34.9 2.3 33 22-59 4-36 (50)
4 3j21_i 50S ribosomal protein L 95.6 0.007 2.4E-07 38.1 2.4 40 22-67 34-73 (83)
5 3iz5_m 60S ribosomal protein L 95.4 0.0077 2.6E-07 38.6 2.1 40 22-67 35-74 (92)
6 4a17_Y RPL37A, 60S ribosomal p 95.2 0.014 4.8E-07 38.1 3.0 40 22-67 35-74 (103)
7 3izc_m 60S ribosomal protein R 95.2 0.0085 2.9E-07 38.4 1.9 40 22-67 35-74 (92)
8 3jyw_9 60S ribosomal protein L 95.1 0.0063 2.2E-07 37.4 1.1 40 22-67 25-64 (72)
9 1dl6_A Transcription factor II 95.1 0.0077 2.6E-07 35.0 1.5 46 19-75 7-52 (58)
10 1ffk_W Ribosomal protein L37AE 94.8 0.032 1.1E-06 34.2 3.7 35 20-60 24-58 (73)
11 1k81_A EIF-2-beta, probable tr 94.1 0.052 1.8E-06 28.8 3.1 31 25-58 2-32 (36)
12 1qyp_A RNA polymerase II; tran 93.9 0.12 4E-06 29.3 4.5 40 19-58 10-54 (57)
13 3cc2_Z 50S ribosomal protein L 93.8 0.05 1.7E-06 36.1 3.2 45 21-71 58-102 (116)
14 1tfi_A Transcriptional elongat 93.1 0.22 7.4E-06 28.0 4.7 37 22-58 8-48 (50)
15 3ga8_A HTH-type transcriptiona 92.7 0.12 4.1E-06 30.8 3.4 52 25-76 4-67 (78)
16 2js4_A UPF0434 protein BB2007; 92.0 0.12 4.2E-06 31.0 2.9 35 19-59 4-38 (70)
17 1twf_I B12.6, DNA-directed RNA 91.9 0.26 8.8E-06 32.0 4.6 32 25-58 6-37 (122)
18 2jr6_A UPF0434 protein NMA0874 90.7 0.14 4.9E-06 30.6 2.2 35 19-59 4-38 (68)
19 2hf1_A Tetraacyldisaccharide-1 90.2 0.14 5E-06 30.6 1.9 35 19-59 4-38 (68)
20 2pk7_A Uncharacterized protein 89.8 0.14 4.7E-06 30.8 1.6 35 19-59 4-38 (69)
21 3j20_Y 30S ribosomal protein S 89.7 0.28 9.7E-06 27.6 2.8 28 24-57 20-47 (50)
22 2e9h_A EIF-5, eukaryotic trans 89.3 0.61 2.1E-05 32.0 4.8 36 23-59 103-138 (157)
23 3o9x_A Uncharacterized HTH-typ 88.9 0.49 1.7E-05 29.6 3.8 34 25-58 4-47 (133)
24 2fiy_A Protein FDHE homolog; F 88.6 0.47 1.6E-05 35.4 4.1 38 21-58 180-219 (309)
25 1twf_I B12.6, DNA-directed RNA 88.4 0.86 2.9E-05 29.4 4.8 41 19-59 67-112 (122)
26 2fiy_A Protein FDHE homolog; F 88.4 0.56 1.9E-05 35.0 4.4 37 23-59 222-265 (309)
27 2k4x_A 30S ribosomal protein S 88.0 0.34 1.2E-05 27.8 2.4 29 23-57 18-46 (55)
28 1pqv_S STP-alpha, transcriptio 87.8 0.55 1.9E-05 34.7 4.0 38 22-59 267-308 (309)
29 4esj_A Type-2 restriction enzy 87.6 0.38 1.3E-05 35.6 3.0 35 23-59 34-68 (257)
30 2apo_B Ribosome biogenesis pro 87.0 0.26 8.9E-06 29.1 1.5 40 23-74 6-45 (60)
31 3h0g_I DNA-directed RNA polyme 86.8 0.32 1.1E-05 31.2 1.9 31 26-58 7-37 (113)
32 2kpi_A Uncharacterized protein 86.8 0.49 1.7E-05 27.1 2.6 33 19-59 6-40 (56)
33 2jny_A Uncharacterized BCR; st 85.6 0.33 1.1E-05 28.9 1.5 35 19-59 6-40 (67)
34 1nui_A DNA primase/helicase; z 85.1 0.38 1.3E-05 33.7 1.8 30 22-56 13-42 (255)
35 2aus_D NOP10, ribosome biogene 84.8 0.47 1.6E-05 28.0 1.8 40 23-74 5-44 (60)
36 3h0g_I DNA-directed RNA polyme 83.9 0.7 2.4E-05 29.5 2.5 40 18-57 66-110 (113)
37 2g2k_A EIF-5, eukaryotic trans 83.4 1.3 4.4E-05 30.8 3.9 35 24-59 97-131 (170)
38 3po3_S Transcription elongatio 82.1 0.4 1.4E-05 33.1 0.9 37 22-58 136-176 (178)
39 4bbr_M Transcription initiatio 82.1 0.84 2.9E-05 34.0 2.7 49 18-75 16-64 (345)
40 3k7a_M Transcription initiatio 81.9 0.28 9.5E-06 36.4 0.0 38 18-58 16-53 (345)
41 2xzm_6 RPS27E; ribosome, trans 80.4 2.5 8.6E-05 26.3 4.0 38 17-59 23-63 (81)
42 3k1f_M Transcription initiatio 80.1 1.1 3.7E-05 32.0 2.5 49 18-75 16-64 (197)
43 1e8j_A Rubredoxin; iron-sulfur 80.0 0.7 2.4E-05 26.2 1.3 18 17-34 30-47 (52)
44 6rxn_A Rubredoxin; electron tr 79.7 0.64 2.2E-05 25.9 1.0 17 18-34 25-41 (46)
45 1yk4_A Rubredoxin, RD; electro 79.1 0.99 3.4E-05 25.5 1.7 21 17-37 29-49 (52)
46 2ct7_A Ring finger protein 31; 78.7 4.1 0.00014 24.4 4.6 52 21-78 23-80 (86)
47 1nee_A EIF-2-beta, probable tr 78.3 0.63 2.2E-05 31.2 0.8 32 23-57 102-133 (138)
48 3j21_g 50S ribosomal protein L 77.9 0.24 8.1E-06 28.3 -1.2 25 22-56 13-37 (51)
49 2kvh_A Zinc finger and BTB dom 77.4 0.86 2.9E-05 19.9 0.9 9 23-31 3-11 (27)
50 1gh9_A 8.3 kDa protein (gene M 77.2 1.9 6.4E-05 25.9 2.7 30 23-60 4-33 (71)
51 2v3b_B Rubredoxin 2, rubredoxi 77.1 1.1 3.9E-05 25.5 1.6 23 17-39 30-52 (55)
52 2d74_B Translation initiation 75.5 0.53 1.8E-05 32.0 -0.2 33 23-58 104-136 (148)
53 2kvg_A Zinc finger and BTB dom 75.3 0.8 2.7E-05 20.2 0.5 8 23-30 3-10 (27)
54 1vd4_A Transcription initiatio 74.6 0.2 7E-06 27.4 -2.1 40 21-63 12-55 (62)
55 2m0d_A Zinc finger and BTB dom 73.9 1.3 4.3E-05 19.3 1.0 9 23-31 3-11 (30)
56 2adr_A ADR1; transcription reg 73.7 0.33 1.1E-05 25.6 -1.3 37 23-59 2-42 (60)
57 1twf_L ABC10-alpha, DNA-direct 73.4 1.9 6.4E-05 25.8 1.9 29 20-55 25-53 (70)
58 3p2a_A Thioredoxin 2, putative 73.4 0.4 1.4E-05 29.8 -1.2 31 23-57 5-35 (148)
59 1dx8_A Rubredoxin; electron tr 73.3 1.2 4E-05 26.7 1.0 24 17-40 34-57 (70)
60 1p7a_A BF3, BKLF, kruppel-like 72.9 1.3 4.3E-05 20.8 0.9 11 21-31 9-19 (37)
61 2kn9_A Rubredoxin; metalloprot 72.5 2.3 7.8E-05 26.3 2.2 18 19-36 56-73 (81)
62 1d0q_A DNA primase; zinc-bindi 72.4 2.1 7.2E-05 26.5 2.1 31 23-57 37-68 (103)
63 1ard_A Yeast transcription fac 72.0 1.3 4.6E-05 19.2 0.9 9 23-31 2-10 (29)
64 4rxn_A Rubredoxin; electron tr 72.0 1.4 4.6E-05 25.3 1.0 19 17-35 30-48 (54)
65 3qt1_I DNA-directed RNA polyme 71.9 0.69 2.4E-05 30.7 -0.3 35 20-57 22-56 (133)
66 2m0e_A Zinc finger and BTB dom 71.7 1.3 4.5E-05 19.0 0.8 9 23-31 2-10 (29)
67 2kvf_A Zinc finger and BTB dom 71.6 1.6 5.6E-05 18.9 1.1 9 23-31 3-11 (28)
68 2elt_A Zinc finger protein 406 71.1 1.5 5E-05 20.3 0.9 11 21-31 7-17 (36)
69 1rik_A E6APC1 peptide; E6-bind 71.1 1.4 4.9E-05 19.2 0.8 8 50-57 5-12 (29)
70 2x5c_A Hypothetical protein OR 70.9 3.3 0.00011 27.1 2.9 20 25-44 54-73 (131)
71 2els_A Zinc finger protein 406 70.9 1.6 5.5E-05 20.3 1.0 11 21-31 7-17 (36)
72 1vzi_A Desulfoferrodoxin; ferr 70.8 2.6 9E-05 27.4 2.4 33 20-59 4-36 (126)
73 2elq_A Zinc finger protein 406 70.0 1.6 5.4E-05 20.3 0.9 11 21-31 7-17 (36)
74 3pwf_A Rubrerythrin; non heme 69.8 1.9 6.6E-05 29.2 1.6 27 20-55 135-161 (170)
75 1paa_A Yeast transcription fac 69.6 1.6 5.4E-05 19.2 0.8 9 23-31 2-10 (30)
76 2elx_A Zinc finger protein 406 69.5 1.7 5.8E-05 19.9 1.0 10 22-31 6-15 (35)
77 2elp_A Zinc finger protein 406 69.2 1.7 5.9E-05 20.3 0.9 11 21-31 7-17 (37)
78 2m0f_A Zinc finger and BTB dom 69.2 1.7 5.8E-05 18.7 0.9 10 49-58 4-13 (29)
79 1dxg_A Desulforedoxin; non-hem 69.2 6.9 0.00024 20.1 3.4 30 20-56 3-32 (36)
80 2lvu_A Zinc finger and BTB dom 72.0 1 3.4E-05 19.5 0.0 9 23-31 2-10 (26)
81 2e2z_A TIM15; protein import, 68.1 4.7 0.00016 25.9 3.1 40 18-59 8-50 (100)
82 2epq_A POZ-, at HOOK-, and zin 68.1 1.8 6.3E-05 21.3 0.9 10 21-30 36-45 (45)
83 2elm_A Zinc finger protein 406 66.9 2.2 7.5E-05 20.2 1.1 11 21-31 7-17 (37)
84 1wd2_A Ariadne-1 protein homol 66.7 0.86 3E-05 26.2 -0.6 31 23-59 6-38 (60)
85 1klr_A Zinc finger Y-chromosom 66.7 1.8 6.2E-05 18.7 0.7 8 24-31 3-10 (30)
86 3u5c_b RP61, YS20, 40S ribosom 66.2 4.1 0.00014 25.3 2.4 38 17-59 25-65 (82)
87 1qxf_A GR2, 30S ribosomal prot 66.1 6.7 0.00023 23.4 3.3 30 25-59 9-38 (66)
88 2lvr_A Zinc finger and BTB dom 69.5 1.2 4.2E-05 19.5 0.0 10 22-31 2-11 (30)
89 3h0g_L DNA-directed RNA polyme 65.9 1.1 3.8E-05 26.5 -0.2 30 21-57 19-48 (63)
90 3j20_W 30S ribosomal protein S 65.8 6.8 0.00023 23.2 3.2 37 18-59 7-46 (63)
91 2elv_A Zinc finger protein 406 65.7 2.3 7.9E-05 19.7 1.0 11 21-31 7-17 (36)
92 1s24_A Rubredoxin 2; electron 64.8 3.3 0.00011 25.8 1.8 16 19-34 64-79 (87)
93 2elr_A Zinc finger protein 406 64.6 2.4 8.2E-05 19.5 0.9 11 21-31 7-17 (36)
94 1srk_A Zinc finger protein ZFP 64.5 2.5 8.7E-05 19.4 1.0 10 22-31 6-15 (35)
95 2ytb_A Zinc finger protein 32; 64.1 2.4 8.2E-05 20.3 0.9 11 21-31 9-19 (42)
96 2k5c_A Uncharacterized protein 63.8 2.1 7.1E-05 27.2 0.7 18 50-67 54-71 (95)
97 3a43_A HYPD, hydrogenase nicke 63.4 3.9 0.00013 26.8 2.1 13 21-33 105-117 (139)
98 2kfq_A FP1; protein, de novo p 62.9 2.4 8.1E-05 19.5 0.7 9 23-31 2-10 (32)
99 2yrc_A Protein transport prote 62.8 1.9 6.6E-05 24.8 0.4 13 22-34 32-44 (59)
100 2lvt_A Zinc finger and BTB dom 66.6 1.6 5.4E-05 19.2 0.0 9 23-31 2-10 (29)
101 2elo_A Zinc finger protein 406 62.4 2.1 7.2E-05 19.9 0.5 11 21-31 7-17 (37)
102 1njq_A Superman protein; zinc- 62.4 2.9 9.9E-05 19.9 1.0 10 22-31 5-14 (39)
103 2ctu_A Zinc finger protein 483 62.0 0.21 7.3E-06 26.9 -3.7 38 20-60 15-52 (73)
104 2kwq_A Protein MCM10 homolog; 61.7 2.6 9E-05 26.6 0.9 31 19-56 44-74 (92)
105 2el5_A Zinc finger protein 268 61.3 3 0.0001 20.0 1.0 11 21-31 8-18 (42)
106 2ept_A Zinc finger protein 32; 61.2 3.1 0.00011 19.9 1.0 11 21-31 8-18 (41)
107 2eof_A Zinc finger protein 268 60.8 3.1 0.00011 20.1 1.0 11 21-31 10-20 (44)
108 1rim_A E6APC2 peptide; E6-bind 60.8 2.8 9.5E-05 19.4 0.7 9 23-31 2-10 (33)
109 2eow_A Zinc finger protein 347 60.8 3.2 0.00011 20.3 1.0 11 21-31 10-20 (46)
110 2yte_A Zinc finger protein 473 60.6 3.1 0.00011 19.9 0.9 11 21-31 8-18 (42)
111 1y07_A Desulfoferrodoxin (RBO) 60.4 5.3 0.00018 26.0 2.3 31 22-59 6-37 (128)
112 2yu5_A Zinc finger protein 473 60.3 3.1 0.00011 20.2 0.9 11 21-31 10-20 (44)
113 2en3_A ZFP-95, zinc finger pro 60.2 3.2 0.00011 20.4 1.0 11 21-31 10-20 (46)
114 2ytf_A Zinc finger protein 268 60.2 3.2 0.00011 20.3 1.0 11 21-31 10-20 (46)
115 2en2_A B-cell lymphoma 6 prote 60.1 3.3 0.00011 19.8 1.0 11 21-31 9-19 (42)
116 2eoy_A Zinc finger protein 473 59.4 3.5 0.00012 20.3 1.0 11 21-31 10-20 (46)
117 2en7_A Zinc finger protein 268 59.2 3.1 0.00011 20.1 0.8 11 21-31 10-20 (44)
118 1fv5_A First zinc finger of U- 59.0 2.6 8.9E-05 21.4 0.5 11 21-31 6-16 (36)
119 2epv_A Zinc finger protein 268 58.8 3.5 0.00012 20.2 1.0 11 21-31 10-20 (44)
120 2epc_A Zinc finger protein 32; 58.8 3.7 0.00013 19.6 1.0 11 21-31 9-19 (42)
121 2emj_A Zinc finger protein 28 58.8 3.4 0.00012 20.4 0.9 11 21-31 10-20 (46)
122 2emb_A Zinc finger protein 473 58.7 3.6 0.00012 20.0 1.0 11 21-31 10-20 (44)
123 2ep3_A Zinc finger protein 484 58.6 3.5 0.00012 20.2 1.0 11 21-31 10-20 (46)
124 2emi_A Zinc finger protein 484 58.5 3.6 0.00012 20.2 1.0 11 21-31 10-20 (46)
125 2dmd_A Zinc finger protein 64, 58.5 1 3.4E-05 25.6 -1.4 11 48-58 65-75 (96)
126 2eos_A B-cell lymphoma 6 prote 58.5 3.6 0.00012 19.8 0.9 11 21-31 9-19 (42)
127 2eq1_A Zinc finger protein 347 58.4 3.4 0.00012 20.3 0.9 11 21-31 10-20 (46)
128 2yts_A Zinc finger protein 484 58.3 3.6 0.00012 20.1 1.0 11 21-31 10-20 (46)
129 2enf_A Zinc finger protein 347 57.5 3.7 0.00013 20.1 0.9 11 21-31 10-20 (46)
130 2em3_A Zinc finger protein 28 57.3 3.8 0.00013 20.1 1.0 11 21-31 10-20 (46)
131 2yto_A Zinc finger protein 484 57.3 3.9 0.00013 20.1 1.0 11 21-31 10-20 (46)
132 2ytj_A Zinc finger protein 484 57.1 3.9 0.00013 20.0 1.0 11 21-31 10-20 (46)
133 2eoz_A Zinc finger protein 473 56.8 3.2 0.00011 20.5 0.6 11 21-31 10-20 (46)
134 2qkd_A Zinc finger protein ZPR 56.8 15 0.00051 28.4 4.6 38 21-58 218-260 (404)
135 2yrj_A Zinc finger protein 473 56.7 4.1 0.00014 19.9 1.0 11 21-31 10-20 (46)
136 2emh_A Zinc finger protein 484 56.6 4.1 0.00014 20.0 1.0 11 21-31 10-20 (46)
137 2epw_A Zinc finger protein 268 56.5 4 0.00014 19.9 1.0 11 21-31 10-20 (46)
138 2eov_A Zinc finger protein 484 56.3 4 0.00014 19.9 0.9 11 21-31 10-20 (46)
139 2em4_A Zinc finger protein 28 56.2 4.1 0.00014 20.0 1.0 11 21-31 10-20 (46)
140 2ytp_A Zinc finger protein 484 56.1 4.2 0.00014 20.0 1.0 11 21-31 10-20 (46)
141 2eme_A Zinc finger protein 473 56.0 4.1 0.00014 19.9 1.0 11 21-31 10-20 (46)
142 2em9_A Zinc finger protein 224 56.0 4.1 0.00014 19.9 1.0 11 21-31 10-20 (46)
143 3cw2_K Translation initiation 55.9 0.82 2.8E-05 30.7 -2.3 35 20-57 100-134 (139)
144 2ene_A Zinc finger protein 347 55.8 4.2 0.00015 19.9 1.0 11 21-31 10-20 (46)
145 2eoj_A Zinc finger protein 268 55.8 3.1 0.00011 20.2 0.4 11 21-31 10-20 (44)
146 2emg_A Zinc finger protein 484 55.8 4.1 0.00014 19.9 0.9 11 21-31 10-20 (46)
147 2yth_A Zinc finger protein 224 55.6 4.1 0.00014 20.0 0.9 11 21-31 10-20 (46)
148 2eoq_A Zinc finger protein 224 55.5 4 0.00014 20.0 0.8 11 21-31 10-20 (46)
149 1v54_B Cytochrome C oxidase po 55.5 3.3 0.00011 29.3 0.7 47 31-78 178-226 (227)
150 3u5c_f 40S ribosomal protein S 55.5 7.4 0.00025 25.8 2.4 31 24-60 119-151 (152)
151 2eml_A Zinc finger protein 28 55.4 4.3 0.00015 19.9 1.0 11 21-31 10-20 (46)
152 2epu_A Zinc finger protein 32; 55.3 3.5 0.00012 20.2 0.6 11 21-31 10-20 (45)
153 2em2_A Zinc finger protein 28 55.3 4.3 0.00015 19.9 1.0 11 21-31 10-20 (46)
154 2eop_A Zinc finger protein 268 55.2 4.3 0.00015 19.8 0.9 11 21-31 10-20 (46)
155 1cyx_A CYOA; electron transpor 55.1 3.2 0.00011 29.5 0.5 48 30-78 78-128 (205)
156 2l6l_A DNAJ homolog subfamily 55.0 8.9 0.0003 24.9 2.7 32 23-59 112-145 (155)
157 2ep2_A Zinc finger protein 484 55.0 4.4 0.00015 19.8 1.0 11 21-31 10-20 (46)
158 2ytn_A Zinc finger protein 347 54.8 4.4 0.00015 19.8 0.9 11 21-31 10-20 (46)
159 2eon_A ZFP-95, zinc finger pro 54.8 4.7 0.00016 19.9 1.0 11 21-31 10-20 (46)
160 2epr_A POZ-, at HOOK-, and zin 54.8 4.4 0.00015 20.2 1.0 9 22-30 39-47 (48)
161 2eq0_A Zinc finger protein 347 54.7 4.7 0.00016 19.7 1.0 11 21-31 10-20 (46)
162 2em0_A Zinc finger protein 224 54.6 4.3 0.00015 19.9 0.9 11 21-31 10-20 (46)
163 1x3c_A Zinc finger protein 292 54.6 14 0.00048 22.3 3.3 13 20-32 24-38 (73)
164 2eq4_A Zinc finger protein 224 54.5 4.1 0.00014 19.9 0.8 11 21-31 10-20 (46)
165 2ep1_A Zinc finger protein 484 54.5 4.1 0.00014 19.9 0.8 11 21-31 10-20 (46)
166 2enh_A Zinc finger protein 28 54.4 5 0.00017 19.7 1.1 11 21-31 10-20 (46)
167 2ytg_A ZFP-95, zinc finger pro 54.3 4.7 0.00016 19.7 1.0 11 21-31 10-20 (46)
168 2emy_A Zinc finger protein 268 54.3 4.8 0.00016 19.7 1.0 11 21-31 10-20 (46)
169 2em7_A Zinc finger protein 224 54.1 4.6 0.00016 19.7 1.0 11 21-31 10-20 (46)
170 2eq2_A Zinc finger protein 347 54.1 4.1 0.00014 19.9 0.7 12 21-32 10-21 (46)
171 1lko_A Rubrerythrin all-iron(I 54.1 9.2 0.00031 26.0 2.7 26 22-56 154-180 (191)
172 2eoo_A ZFP-95, zinc finger pro 54.0 4.8 0.00016 19.8 1.0 11 21-31 10-20 (46)
173 2emk_A Zinc finger protein 28 54.0 4.6 0.00016 19.8 0.9 11 21-31 10-20 (46)
174 2ely_A Zinc finger protein 224 53.9 4.5 0.00015 19.9 0.9 11 21-31 10-20 (46)
175 2en8_A Zinc finger protein 224 53.8 4.8 0.00016 19.6 1.0 11 21-31 10-20 (46)
176 2ema_A Zinc finger protein 347 53.8 4.9 0.00017 19.6 1.0 11 21-31 10-20 (46)
177 2el4_A Zinc finger protein 268 53.7 4.6 0.00016 19.7 0.9 11 21-31 10-20 (46)
178 2eoh_A Zinc finger protein 28 53.7 4.8 0.00017 19.7 1.0 11 21-31 10-20 (46)
179 2emf_A Zinc finger protein 484 53.6 5 0.00017 19.7 1.0 11 21-31 10-20 (46)
180 2emz_A ZFP-95, zinc finger pro 53.6 4.4 0.00015 19.9 0.8 11 21-31 10-20 (46)
181 2en9_A Zinc finger protein 28 53.5 4.9 0.00017 19.7 1.0 11 21-31 10-20 (46)
182 2eq3_A Zinc finger protein 347 53.2 3.5 0.00012 20.2 0.4 11 21-31 10-20 (46)
183 1znf_A 31ST zinc finger from X 53.0 4.5 0.00015 17.1 0.7 9 50-58 4-12 (27)
184 2epz_A Zinc finger protein 28 53.0 4.8 0.00017 19.7 0.9 11 21-31 10-20 (46)
185 2yu8_A Zinc finger protein 347 52.9 5 0.00017 19.6 1.0 11 21-31 10-20 (46)
186 2yti_A Zinc finger protein 347 52.9 3.9 0.00013 20.0 0.5 11 21-31 10-20 (46)
187 2drp_A Protein (tramtrack DNA- 52.8 5.1 0.00017 21.0 1.0 11 21-31 38-48 (66)
188 2gsm_B Cytochrome C oxidase su 52.8 4.7 0.00016 29.1 1.1 47 30-77 208-256 (262)
189 2em5_A ZFP-95, zinc finger pro 52.7 5.1 0.00017 19.6 1.0 11 21-31 10-20 (46)
190 2eor_A Zinc finger protein 224 52.7 5.2 0.00018 19.5 1.0 11 21-31 10-20 (46)
191 1yui_A GAGA-factor; complex (D 52.6 5.3 0.00018 20.5 1.1 11 21-31 22-32 (54)
192 1fft_B Ubiquinol oxidase; elec 52.5 5.8 0.0002 29.6 1.6 48 30-78 188-238 (315)
193 2em6_A Zinc finger protein 224 52.5 5.1 0.00017 19.7 0.9 11 21-31 10-20 (46)
194 3uk3_C Zinc finger protein 217 52.4 4.5 0.00015 20.5 0.7 38 22-59 3-44 (57)
195 2em8_A Zinc finger protein 224 52.3 5.2 0.00018 19.6 1.0 11 21-31 10-20 (46)
196 2enc_A Zinc finger protein 224 52.3 5.2 0.00018 19.6 1.0 11 21-31 10-20 (46)
197 2eox_A Zinc finger protein 473 52.2 4.3 0.00015 19.7 0.6 11 21-31 10-20 (44)
198 3mjh_B Early endosome antigen 52.0 4.4 0.00015 21.1 0.7 9 23-31 5-13 (34)
199 2emp_A Zinc finger protein 347 52.0 5.3 0.00018 19.5 1.0 11 21-31 10-20 (46)
200 2epx_A Zinc finger protein 28 51.9 5.1 0.00017 19.5 0.9 11 21-31 10-20 (47)
201 2emx_A Zinc finger protein 268 51.9 5.3 0.00018 19.3 0.9 11 21-31 8-18 (44)
202 2au3_A DNA primase; zinc ribbo 51.8 7.3 0.00025 29.2 2.1 30 23-56 34-64 (407)
203 2ytk_A Zinc finger protein 347 51.4 5.5 0.00019 19.4 1.0 11 21-31 10-20 (46)
204 2emm_A ZFP-95, zinc finger pro 51.3 5.5 0.00019 19.4 1.0 11 21-31 10-20 (46)
205 2ytq_A Zinc finger protein 268 51.2 5.3 0.00018 19.6 0.9 11 21-31 10-20 (46)
206 2el6_A Zinc finger protein 268 51.1 5.4 0.00018 19.6 0.9 11 21-31 10-20 (46)
207 2eou_A Zinc finger protein 473 51.1 5.4 0.00019 19.3 0.9 11 21-31 10-20 (44)
208 3hpw_C Protein CCDA; alpha+bet 51.0 4.8 0.00016 21.2 0.7 12 66-77 14-25 (36)
209 4gzn_C ZFP-57, zinc finger pro 50.8 5.6 0.00019 22.0 1.0 39 21-59 2-44 (60)
210 2ytd_A Zinc finger protein 473 50.7 5.7 0.00019 19.4 1.0 11 21-31 10-20 (46)
211 2elz_A Zinc finger protein 224 50.3 5.6 0.00019 19.5 0.9 11 21-31 10-20 (46)
212 2k5r_A Uncharacterized protein 50.3 10 0.00035 23.9 2.3 15 45-59 51-65 (97)
213 2eom_A ZFP-95, zinc finger pro 50.3 5.8 0.0002 19.5 1.0 11 21-31 10-20 (46)
214 4ayb_P DNA-directed RNA polyme 50.2 2.1 7.2E-05 24.3 -0.9 37 22-62 2-38 (48)
215 3iuf_A Zinc finger protein UBI 50.2 6 0.00021 20.0 1.0 10 22-31 6-15 (48)
216 2ysp_A Zinc finger protein 224 49.8 4.8 0.00017 19.7 0.6 11 21-31 10-20 (46)
217 4e2x_A TCAB9; kijanose, tetron 49.6 23 0.00077 25.6 4.4 38 23-62 12-68 (416)
218 2yrm_A B-cell lymphoma 6 prote 49.1 6.2 0.00021 19.1 0.9 11 21-31 8-18 (43)
219 2ep0_A Zinc finger protein 28 49.0 6.3 0.00021 19.2 1.0 11 21-31 10-20 (46)
220 2ytr_A Zinc finger protein 347 48.8 5.1 0.00017 19.5 0.6 11 21-31 10-20 (46)
221 2ytm_A Zinc finger protein 28 48.5 5.5 0.00019 19.6 0.7 11 21-31 10-20 (46)
222 1bbo_A Human enhancer-binding 48.4 6.4 0.00022 19.9 0.9 10 22-31 28-37 (57)
223 2yso_A ZFP-95, zinc finger pro 48.3 6.8 0.00023 19.1 1.0 11 21-31 10-20 (46)
224 2en6_A Zinc finger protein 268 47.6 5.7 0.0002 19.4 0.7 11 21-31 10-20 (46)
225 3hb3_B Cytochrome C oxidase su 47.5 6.2 0.00021 29.2 1.1 48 30-78 226-275 (298)
226 3eqt_A ATP-dependent RNA helic 47.4 8.9 0.0003 25.9 1.8 15 43-57 65-79 (145)
227 3cng_A Nudix hydrolase; struct 46.9 12 0.00039 24.4 2.3 27 26-54 6-32 (189)
228 2jne_A Hypothetical protein YF 46.9 13 0.00044 23.9 2.4 28 24-59 33-60 (101)
229 2en1_A Zinc finger protein 224 46.9 5.7 0.0002 19.4 0.6 11 21-31 10-20 (46)
230 2ytt_A Zinc finger protein 473 46.7 6.1 0.00021 19.3 0.7 11 21-31 10-20 (46)
231 2xzm_9 RPS31E; ribosome, trans 46.2 7.5 0.00026 27.1 1.3 29 25-59 115-143 (189)
232 3iz6_X 40S ribosomal protein S 45.5 8.5 0.00029 24.1 1.3 28 25-57 38-65 (86)
233 1p91_A Ribosomal RNA large sub 45.4 8 0.00027 25.9 1.3 24 24-55 3-26 (269)
234 1l8d_A DNA double-strand break 45.4 6.5 0.00022 24.1 0.8 7 25-31 49-55 (112)
235 2eoe_A Zinc finger protein 347 44.7 5.7 0.0002 19.3 0.4 11 21-31 10-20 (46)
236 2jrp_A Putative cytoplasmic pr 44.5 16 0.00056 22.4 2.5 8 25-32 4-11 (81)
237 1f2i_G Fusion of N-terminal 17 44.2 8.3 0.00028 20.6 1.0 10 49-58 51-60 (73)
238 2ct1_A Transcriptional repress 43.9 8.1 0.00028 21.0 1.0 39 21-59 13-57 (77)
239 1x6e_A Zinc finger protein 24; 43.8 8.3 0.00028 20.7 1.0 40 20-59 11-54 (72)
240 2eps_A POZ-, at HOOK-, and zin 43.3 8.1 0.00028 19.8 0.9 11 21-31 39-49 (54)
241 3flo_B DNA polymerase alpha ca 43.0 4 0.00014 28.8 -0.6 36 22-58 21-60 (206)
242 2jvx_A NF-kappa-B essential mo 41.7 11 0.00036 18.9 1.1 10 22-31 2-11 (28)
243 1wjv_A Cell growth regulating 40.7 23 0.00078 21.7 2.7 32 23-58 10-48 (79)
244 2d9h_A Zinc finger protein 692 40.5 10 0.00034 20.6 1.0 39 21-59 5-50 (78)
245 2e72_A POGO transposable eleme 39.8 10 0.00034 21.5 0.9 11 22-32 11-21 (49)
246 4ap4_A E3 ubiquitin ligase RNF 39.4 3.2 0.00011 25.2 -1.3 35 24-58 49-83 (133)
247 2jrr_A Uncharacterized protein 38.8 19 0.00066 21.3 2.1 25 34-60 29-53 (67)
248 2zjr_Z 50S ribosomal protein L 38.3 7.1 0.00024 22.5 0.1 26 19-55 26-51 (60)
249 1llm_C Chimera of ZIF23-GCN4; 38.1 12 0.00039 20.9 1.0 38 22-59 2-43 (88)
250 1x5w_A Zinc finger protein 64, 38.0 11 0.00038 20.0 0.9 39 21-59 7-49 (70)
251 1ltl_A DNA replication initiat 37.9 9.5 0.00033 27.2 0.8 34 21-56 132-165 (279)
252 2eln_A Zinc finger protein 406 37.9 12 0.00043 18.7 1.1 11 21-31 7-19 (38)
253 1zfd_A SWI5; DNA binding motif 37.5 12 0.00043 16.4 0.9 10 22-31 2-13 (32)
254 1zso_A Hypothetical protein; s 37.3 16 0.00055 24.8 1.8 34 21-54 68-113 (164)
255 1t1h_A Gspef-atpub14, armadill 36.9 14 0.00049 20.5 1.3 16 18-33 3-18 (78)
256 2qkd_A Zinc finger protein ZPR 36.8 24 0.00082 27.3 2.9 34 24-58 13-52 (404)
257 2kmk_A Zinc finger protein GFI 36.6 12 0.00042 20.0 1.0 9 23-31 57-65 (82)
258 2lce_A B-cell lymphoma 6 prote 36.3 13 0.00043 20.0 1.0 8 23-30 45-52 (74)
259 1ee8_A MUTM (FPG) protein; bet 35.9 23 0.00078 25.3 2.5 27 25-55 237-263 (266)
260 2jvm_A Uncharacterized protein 35.9 29 0.00098 21.3 2.6 36 21-60 26-66 (80)
261 4dvc_A Thiol:disulfide interch 35.8 3.5 0.00012 25.9 -1.7 9 23-31 30-38 (184)
262 2cot_A Zinc finger protein 435 35.7 13 0.00044 20.1 1.0 8 22-29 17-24 (77)
263 2gli_A Protein (five-finger GL 35.7 14 0.00046 22.4 1.1 13 47-59 67-81 (155)
264 1sp2_A SP1F2; zinc finger, tra 35.7 13 0.00046 16.2 0.9 9 23-31 2-12 (31)
265 1yuz_A Nigerythrin; rubrythrin 35.6 11 0.00039 25.9 0.8 11 24-34 187-197 (202)
266 2lv2_A Insulinoma-associated p 35.5 13 0.00043 21.9 0.9 9 22-30 27-35 (85)
267 2xzf_A Formamidopyrimidine-DNA 35.1 22 0.00074 25.4 2.3 27 25-55 244-270 (271)
268 1k82_A Formamidopyrimidine-DNA 34.9 22 0.00074 25.4 2.3 26 25-54 242-267 (268)
269 1x6h_A Transcriptional repress 34.8 14 0.00047 20.0 1.0 11 21-31 45-55 (86)
270 1k3x_A Endonuclease VIII; hydr 34.8 22 0.00075 25.3 2.3 26 25-54 236-261 (262)
271 3q87_A Putative uncharacterize 34.6 22 0.00075 23.3 2.1 15 45-59 97-111 (125)
272 1yop_A KTI11P; zinc finger, me 34.0 13 0.00045 22.7 0.9 33 23-58 23-56 (83)
273 1va1_A Transcription factor SP 33.7 16 0.00055 16.9 1.0 11 21-31 6-18 (37)
274 2dkt_A Ring finger and CHY zin 33.4 25 0.00085 23.6 2.2 32 22-60 97-128 (143)
275 3u6p_A Formamidopyrimidine-DNA 33.1 24 0.00083 25.3 2.3 26 25-54 247-272 (273)
276 3mhs_C SAGA-associated factor 32.8 16 0.00055 23.3 1.2 13 19-31 66-78 (99)
277 3sgi_A DNA ligase; HET: DNA AM 32.2 9.6 0.00033 31.0 0.0 29 24-58 416-448 (615)
278 3ga3_A Interferon-induced heli 32.0 21 0.00073 23.7 1.7 14 43-57 63-76 (133)
279 2avu_E Flagellar transcription 31.8 15 0.00051 25.8 0.9 12 20-31 151-162 (192)
280 2eod_A TNF receptor-associated 31.8 18 0.00061 19.1 1.1 37 21-60 8-50 (66)
281 2ebt_A Krueppel-like factor 5; 31.8 16 0.00053 20.4 0.9 10 22-31 74-83 (100)
282 1a1h_A QGSR zinc finger peptid 31.1 18 0.0006 19.7 1.0 8 23-30 62-69 (90)
283 2dlk_A Novel protein; ZF-C2H2 31.1 16 0.00054 19.6 0.8 10 22-31 67-76 (79)
284 2yt9_A Zinc finger-containing 30.6 18 0.00061 20.0 1.0 39 21-59 5-47 (95)
285 1bhi_A CRE-BP1, ATF-2; CRE bin 30.4 20 0.00069 16.4 1.1 10 22-31 5-16 (38)
286 2zkr_2 60S ribosomal protein L 30.3 26 0.00088 22.3 1.8 26 21-55 14-39 (97)
287 2epp_A POZ-, at HOOK-, and zin 30.2 17 0.00059 20.6 0.9 12 21-32 11-22 (66)
288 3eyy_A Putative iron uptake re 29.4 28 0.00095 22.2 1.9 21 45-65 88-108 (145)
289 2ab3_A ZNF29; zinc finger prot 28.8 17 0.00057 15.2 0.5 10 49-58 4-15 (29)
290 1m2o_A SEC23, protein transpor 27.9 22 0.00076 29.0 1.5 15 22-36 76-90 (768)
291 2lkl_A Erythrocyte membrane pr 27.2 23 0.0008 21.7 1.1 17 61-77 40-56 (81)
292 3u50_C Telomerase-associated p 27.0 24 0.00081 24.1 1.3 28 22-56 41-68 (172)
293 2dmi_A Teashirt homolog 3; zin 27.0 21 0.00072 20.6 0.9 11 21-31 78-88 (115)
294 1wff_A Riken cDNA 2810002D23 p 26.8 62 0.0021 19.9 3.1 26 23-59 25-51 (85)
295 2gqj_A Zinc finger protein KIA 26.8 21 0.00072 20.5 0.9 39 21-59 22-66 (98)
296 1x0g_A ISCA; [2Fe-2S], biosynt 26.8 19 0.00064 22.2 0.7 13 46-59 97-109 (112)
297 1x0t_A Ribonuclease P protein 26.7 1.2E+02 0.0042 19.0 6.1 41 22-62 64-109 (120)
298 2csh_A Zinc finger protein 297 26.3 23 0.00079 20.2 1.0 10 22-31 64-73 (110)
299 2ee8_A Protein ODD-skipped-rel 26.0 23 0.00079 20.0 0.9 40 20-59 14-57 (106)
300 2dlq_A GLI-kruppel family memb 25.6 24 0.00082 20.3 1.0 9 49-57 96-104 (124)
301 3d00_A Tungsten formylmethanof 25.3 26 0.00089 24.0 1.2 19 41-59 157-175 (191)
302 3alr_A Nanos protein; zinc-fin 25.2 25 0.00086 22.7 1.1 14 19-32 67-80 (106)
303 2lcq_A Putative toxin VAPC6; P 25.1 35 0.0012 22.1 1.8 8 25-32 150-157 (165)
304 2j6a_A Protein TRM112; transla 24.6 37 0.0013 22.7 1.8 16 44-59 106-121 (141)
305 2ent_A Krueppel-like factor 15 24.1 25 0.00086 16.9 0.8 8 22-29 41-48 (48)
306 2aze_B Transcription factor E2 23.6 18 0.00061 22.9 0.1 16 56-71 86-101 (106)
307 2nut_A Protein transport prote 23.3 20 0.0007 29.3 0.4 14 22-35 85-98 (769)
308 2i5o_A DNA polymerase ETA; zin 23.1 31 0.0011 18.2 1.0 10 22-31 8-17 (39)
309 3bvo_A CO-chaperone protein HS 22.9 31 0.001 23.8 1.2 26 23-55 10-35 (207)
310 1ncs_A Peptide M30F, transcrip 22.9 34 0.0012 16.7 1.1 11 21-31 16-28 (47)
311 3gn3_A Putative protein-disulf 22.5 8.6 0.00029 25.5 -1.7 9 23-31 23-31 (182)
312 2fe3_A Peroxide operon regulat 22.4 49 0.0017 20.9 2.1 21 45-65 91-111 (145)
313 2kr4_A Ubiquitin conjugation f 22.3 32 0.0011 20.0 1.0 15 18-32 9-23 (85)
314 2con_A RUH-035 protein, NIN on 22.2 62 0.0021 19.5 2.4 20 19-39 27-46 (79)
315 2ysl_A Tripartite motif-contai 21.8 31 0.001 18.7 0.9 17 17-33 14-30 (73)
316 2lt7_A Transcriptional regulat 21.7 22 0.00075 22.2 0.3 39 21-59 20-62 (133)
317 3na7_A HP0958; flagellar bioge 21.5 31 0.0011 24.1 1.1 11 21-31 220-230 (256)
318 1l1o_C Replication protein A 7 21.5 30 0.001 23.1 1.0 28 23-57 43-72 (181)
319 1we9_A PHD finger family prote 21.3 1E+02 0.0035 16.7 3.1 44 24-75 7-51 (64)
320 1x6f_A Zinc finger protein 462 21.1 33 0.0011 19.9 1.0 12 20-31 22-33 (88)
321 1pcx_A Protein transport prote 21.0 25 0.00084 29.0 0.5 14 22-35 133-146 (810)
322 1wgm_A Ubiquitin conjugation f 20.9 34 0.0012 20.6 1.0 14 18-31 17-30 (98)
323 2d9k_A FLN29 gene product; zin 20.9 35 0.0012 19.0 1.0 37 19-58 13-54 (75)
324 3lrr_A Probable ATP-dependent 20.9 47 0.0016 21.5 1.8 14 44-57 56-71 (121)
325 2k16_A Transcription initiatio 20.7 39 0.0013 19.1 1.2 33 19-60 14-46 (75)
326 1wjp_A Zinc finger protein 295 20.7 34 0.0012 19.5 1.0 40 20-59 13-54 (107)
327 2ctd_A Zinc finger protein 512 20.6 35 0.0012 19.8 1.0 38 22-59 33-74 (96)
328 2k3r_A Ribonuclease P protein 20.6 1.7E+02 0.0059 18.5 5.9 41 22-62 59-104 (123)
329 2kre_A Ubiquitin conjugation f 20.3 36 0.0012 20.5 1.1 15 18-32 24-38 (100)
330 2wbt_A B-129; zinc finger; 2.7 20.2 35 0.0012 20.0 1.0 9 23-31 100-108 (129)
331 3t7l_A Zinc finger FYVE domain 20.1 43 0.0015 20.0 1.3 41 22-70 19-66 (90)
332 3eh2_A Protein transport prote 20.0 26 0.0009 28.7 0.5 14 22-35 115-128 (766)
No 1
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=100.00 E-value=2.5e-45 Score=235.21 Aligned_cols=80 Identities=59% Similarity=1.134 Sum_probs=72.0
Q ss_pred CCCCcCCCCCCCCCCCCCCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCchhhhhhhhhhhcCCC
Q psy3498 2 GRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWVDASVPS 81 (81)
Q Consensus 2 GkRK~~~k~~~kkk~~~~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~epIDVYs~WiD~c~~~ 81 (81)
||||+++++++|++.+++|||.|+||||||++||+|+||++.++|.|+|++||++||++||+|+|||||||+|||+|+|.
T Consensus 2 ~rRKs~~k~~~k~k~~~~L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epiDVYs~WiDac~~~ 81 (85)
T 1wii_A 2 SSGSSGRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACESG 81 (85)
T ss_dssp CCCCCCCCCCCCCCCCCCCSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCCTTHHHHHHHHHHHHC
T ss_pred CCccccCCCCCCcccCCCCCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccCcchhhHHHHHHHHHHH
Confidence 44556667766665358999999999999999999999999999999999999999999999999999999999999873
No 2
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.14 E-value=0.0028 Score=39.60 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=30.5
Q ss_pred CceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCchhhh
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDV 70 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~epIDV 70 (81)
...|.|||||.+ . .. ....|...|..||..|.--+-.++.|.-+
T Consensus 25 ~~~y~Cp~CG~~-~---v~--r~atGiW~C~~Cg~~~aggay~~~t~~~~ 68 (83)
T 1vq8_Z 25 NEDHACPNCGED-R---VD--RQGTGIWQCSYCDYKFTGGSYKPETPGGK 68 (83)
T ss_dssp HSCEECSSSCCE-E---EE--EEETTEEEETTTCCEEECCSSSSSCHHHH
T ss_pred cccCcCCCCCCc-c---ee--ccCCCeEECCCCCCEecCCEecccchHHH
Confidence 468999999972 1 11 23568999999999987654444555443
No 3
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=96.08 E-value=0.0033 Score=34.94 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=24.7
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
..+.||.|+.+ .+..|. ..|.+.|..||+.|..
T Consensus 4 ~~~~CP~C~~~---~l~~d~--~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESA---ELIYDP--ERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCC---CEEEET--TTTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCc---ceEEcC--CCCeEECcccCCcccc
Confidence 45789999984 344555 3478999999998864
No 4
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.55 E-value=0.007 Score=38.08 Aligned_cols=40 Identities=20% Similarity=0.481 Sum_probs=28.6
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCch
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEA 67 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~ep 67 (81)
..+.||||+... ++ + ..+|+-.|+.|+..|.--.-.++.|
T Consensus 34 ~ky~CpfCGk~~---vk--R-~a~GIW~C~kCg~~~AGGAy~~~T~ 73 (83)
T 3j21_i 34 QKHTCPVCGRKA---VK--R-ISTGIWQCQKCGATFAGGAYLPVTP 73 (83)
T ss_dssp SCBCCSSSCSSC---EE--E-EETTEEEETTTCCEEECCSSSSSCH
T ss_pred cccCCCCCCCce---eE--e-cCcCeEEcCCCCCEEeCCccccCcc
Confidence 478999999852 22 2 4678999999999987544444444
No 5
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=95.37 E-value=0.0077 Score=38.55 Aligned_cols=40 Identities=15% Similarity=0.364 Sum_probs=28.8
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCch
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEA 67 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~ep 67 (81)
..+.|||||... +.+ ..+|+-.|+.|+..|.--.-.++.|
T Consensus 35 ~ky~CpfCgk~~-----vkR-~a~GIW~C~~Cg~~~AGGAy~~~T~ 74 (92)
T 3iz5_m 35 SKYFCEFCGKFA-----VKR-KAVGIWGCKDCGKVKAGGAYTMNTA 74 (92)
T ss_dssp SCBCCTTTCSSC-----BEE-EETTEEECSSSCCEEECCSSSSCCH
T ss_pred ccccCcccCCCe-----eEe-cCcceEEcCCCCCEEeCCcccCCCc
Confidence 578999999853 222 4678999999999987544444444
No 6
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=95.19 E-value=0.014 Score=38.07 Aligned_cols=40 Identities=18% Similarity=0.475 Sum_probs=28.2
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCch
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEA 67 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~ep 67 (81)
..+.|||||.. . +.+ ..+|+-.|+.|+..|.--.-.++.|
T Consensus 35 aky~CpfCgk~---~--vKR-~a~GIW~C~kCg~~~AGGAy~~~T~ 74 (103)
T 4a17_Y 35 AKYGCPFCGKV---A--VKR-AAVGIWKCKPCKKIIAGGAWELTTP 74 (103)
T ss_dssp SCEECTTTCCE---E--EEE-EETTEEEETTTTEEEECCSSCSSCH
T ss_pred cCCCCCCCCCc---e--eee-cCcceEEcCCCCCEEeCCcccCCCc
Confidence 67899999973 3 333 4678999999999987543333333
No 7
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=95.19 E-value=0.0085 Score=38.38 Aligned_cols=40 Identities=18% Similarity=0.532 Sum_probs=28.6
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCch
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEA 67 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~ep 67 (81)
..+.||||+... +.+ ..+|+-.|+.|+..|.--.-.++.|
T Consensus 35 ~ky~CpfCgk~~-----vkR-~a~GIW~C~~C~~~~AGGAy~~~T~ 74 (92)
T 3izc_m 35 ARYDCSFCGKKT-----VKR-GAAGIWTCSCCKKTVAGGAYTVSTA 74 (92)
T ss_dssp SCCCCSSSCSSC-----CEE-EETTEEECTTTCCEEECCSSSSCCH
T ss_pred cCCcCCCCCCce-----eee-cccceEEcCCCCCEEeCCcccCCCc
Confidence 578999999853 222 4678999999999987544444444
No 8
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=95.15 E-value=0.0063 Score=37.39 Aligned_cols=40 Identities=18% Similarity=0.532 Sum_probs=28.6
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCch
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEA 67 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~ep 67 (81)
..+.||||+... +.+ ..+|+-.|+.|+..|.--.-.++.|
T Consensus 25 ~ky~C~fCgk~~-----vkR-~a~GIW~C~~C~~~~AGGAy~~~T~ 64 (72)
T 3jyw_9 25 ARYDCSFCGKKT-----VKR-GAAGIWTCSCCKKTVAGGAYTVSTA 64 (72)
T ss_dssp SCBCCSSCCSSC-----BSB-CSSSCBCCSSSCCCCCCSSSSSCCH
T ss_pred cCccCCCCCCce-----eEe-cCCCeEECCCCCCEEeCCccccCCc
Confidence 678999999853 433 5689999999999886543333333
No 9
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=95.14 E-value=0.0077 Score=34.99 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=31.5
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCchhhhhhhhh
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWV 75 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~epIDVYs~Wi 75 (81)
+|...-.||.|+.++ +..| ...|.+.|..||+.++. ..||.=.+|-
T Consensus 7 ~ll~~~~Cp~C~~~~---lv~D--~~~ge~vC~~CGlVl~e------~~iD~gpEWR 52 (58)
T 1dl6_A 7 DALPRVTCPNHPDAI---LVED--YRAGDMICPECGLVVGD------RVIDVGSEWR 52 (58)
T ss_dssp CCCSCCSBTTBSSSC---CEEC--SSSCCEECTTTCCEECC------SCCCCCCSCC
T ss_pred hccccccCcCCCCCc---eeEe--CCCCeEEeCCCCCEEec------cccccCCccc
Confidence 355566899999865 3334 35588999999998864 3455555553
No 10
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=94.82 E-value=0.032 Score=34.22 Aligned_cols=35 Identities=17% Similarity=0.506 Sum_probs=26.1
Q ss_pred CCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEec
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~ 60 (81)
....+.||||+.. . ++ + ..+|+-.|+.|+..|.--
T Consensus 24 q~~ky~C~fCgk~-~--vk--R-~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 24 HKKKYKCPVCGFP-K--LK--R-ASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred cccCccCCCCCCc-e--eE--E-EEeEEEECCCCCcEEECC
Confidence 4578999999973 2 22 2 457999999999988643
No 11
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=94.10 E-value=0.052 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=24.3
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEcccccceeE
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQ 58 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~ 58 (81)
.||.|+...+.-++ ++..-.+.|..||....
T Consensus 2 lC~~C~~peT~l~~---~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIK---EGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEE---ETTEEEEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEE---eCCcEEEEhhcCCCccc
Confidence 49999998765444 46788999999998665
No 12
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=93.86 E-value=0.12 Score=29.29 Aligned_cols=40 Identities=18% Similarity=0.463 Sum_probs=29.2
Q ss_pred CCC-ceecCCCCCCCCceEEEeec----CCceEEEEcccccceeE
Q psy3498 19 PLD-IQFNCPFCNHEKSCEVKMDK----GRNSARIACRVCLEDFQ 58 (81)
Q Consensus 19 ~l~-~~F~CPfC~~~~sV~v~i~k----~~~~g~l~C~~C~~~~~ 58 (81)
.+| +.+.||.|||...+--.+.- ..+.....|..||-.+.
T Consensus 10 ~~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 10 TLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp SSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred cCCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 344 35899999998777666543 13567889999998765
No 13
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=93.82 E-value=0.05 Score=36.10 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=30.8
Q ss_pred CceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCchhhhh
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVY 71 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~epIDVY 71 (81)
...+.|||||.. .++- ..+|+-.|+.|+..|.--+-.++.|.-+.
T Consensus 58 ~akytCPfCGk~---~vKR---~avGIW~C~~Cgk~fAGGAy~~~T~~~~t 102 (116)
T 3cc2_Z 58 NEDHACPNCGED---RVDR---QGTGIWQCSYCDYKFTGGSYKPETPGGKT 102 (116)
T ss_dssp HSCEECSSSCCE---EEEE---EETTEEEETTTCCEEECCSSSSSCHHHHH
T ss_pred ccCCcCCCCCCc---eeEe---cCceeEECCCCCCEEECCCcccccchhhh
Confidence 467899999972 3332 34689999999999976544455554433
No 14
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=93.09 E-value=0.22 Score=28.05 Aligned_cols=37 Identities=14% Similarity=0.409 Sum_probs=28.7
Q ss_pred ceecCCCCCCCCceEEEeecC----CceEEEEcccccceeE
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKG----RNSARIACRVCLEDFQ 58 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~----~~~g~l~C~~C~~~~~ 58 (81)
+.+.||.|||.+.+--.+.-. .+.-...|..||-.+.
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 468999999999887776542 3556788999998764
No 15
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=92.70 E-value=0.12 Score=30.81 Aligned_cols=52 Identities=13% Similarity=0.370 Sum_probs=31.2
Q ss_pred cCCCCCCCCc----eEEEeecCC------ceEEEEcccccceeEe--ccCCCCchhhhhhhhhh
Q psy3498 25 NCPFCNHEKS----CEVKMDKGR------NSARIACRVCLEDFQT--TINFLSEAIDVYNDWVD 76 (81)
Q Consensus 25 ~CPfC~~~~s----V~v~i~k~~------~~g~l~C~~C~~~~~~--~i~~L~epIDVYs~WiD 76 (81)
.||+|+.... ..+.++.+. ++--..|..||+.|-+ ....+++.++-+.+=+|
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~~e~~~~~~~~~~~f~~~vd 67 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVN 67 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEECHHHHHHHHHHHHHHHHHHh
Confidence 6999998633 334454443 3345689999998754 23344455555554444
No 16
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=92.03 E-value=0.12 Score=31.05 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=26.7
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
.|-....||.|+.. ..++.. -|.+.|..||..|..
T Consensus 4 ~LL~iL~CP~ck~~----L~~~~~--~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 4 RLLDILVCPVCKGR----LEFQRA--QAELVCNADRLAFPV 38 (70)
T ss_dssp CCCCCCBCTTTCCB----EEEETT--TTEEEETTTTEEEEE
T ss_pred HHhhheECCCCCCc----CEEeCC--CCEEEcCCCCceecC
Confidence 46678899999982 334333 478999999999975
No 17
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=91.90 E-value=0.26 Score=31.97 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=25.4
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEcccccceeE
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQ 58 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~ 58 (81)
=||.||+ .+...-++......+.|+.||..+.
T Consensus 6 FCp~Cgn--lL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 6 FCRDCNN--MLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp BCSSSCC--BCEEEEETTTTEEEEECSSSSCEEE
T ss_pred cccccCc--cCcccccCcCCCCEEECCcCCCeee
Confidence 3999996 5666666667789999999997665
No 18
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=90.68 E-value=0.14 Score=30.59 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=26.1
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
.|-....||.|... +. ++. .-+.+.|..||..|..
T Consensus 4 ~LL~iL~CP~ck~~--L~--~~~--~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 4 KFLDILVCPVTKGR--LE--YHQ--DKQELWSRQAKLAYPI 38 (68)
T ss_dssp SSSCCCBCSSSCCB--CE--EET--TTTEEEETTTTEEEEE
T ss_pred HHhhheECCCCCCc--Ce--EeC--CCCEEEcCCCCcEecC
Confidence 46678899999973 33 333 2378999999999975
No 19
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=90.18 E-value=0.14 Score=30.57 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=26.1
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
.|-....||.|... +. ++. ..+.+.|..||..|..
T Consensus 4 ~LL~iL~CP~ck~~--L~--~~~--~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 4 KFLEILVCPLCKGP--LV--FDK--SKDELICKGDRLAFPI 38 (68)
T ss_dssp CCEEECBCTTTCCB--CE--EET--TTTEEEETTTTEEEEE
T ss_pred HHhhheECCCCCCc--Ce--EeC--CCCEEEcCCCCcEecC
Confidence 46678899999973 33 333 2478999999999975
No 20
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=89.80 E-value=0.14 Score=30.77 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=26.1
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
.|-....||.|+.. + .++. ..+.+.|..||..|..
T Consensus 4 ~LLeiL~CP~ck~~--L--~~~~--~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 4 KLLDILACPICKGP--L--KLSA--DKTELISKGAGLAYPI 38 (69)
T ss_dssp CGGGTCCCTTTCCC--C--EECT--TSSEEEETTTTEEEEE
T ss_pred HHHhheeCCCCCCc--C--eEeC--CCCEEEcCCCCcEecC
Confidence 45677899999973 2 2333 3478999999999975
No 21
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.71 E-value=0.28 Score=27.57 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=18.8
Q ss_pred ecCCCCCCCCceEEEeecCCceEEEEccccccee
Q psy3498 24 FNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 24 F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
=-||.||+. .+.. - ......|+.||..+
T Consensus 20 k~CP~CG~~-~fm~-~----~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPG-VFMA-D----HGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSS-CEEE-E----CSSEEECSSSCCEE
T ss_pred ccCCCCCCc-eEEe-c----CCCeEECCCCCCEE
Confidence 349999984 2222 1 12578999999865
No 22
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.34 E-value=0.61 Score=32.01 Aligned_cols=36 Identities=14% Similarity=0.363 Sum_probs=28.4
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
.=.||.|+...+. ..++++...-.+.|..||+...-
T Consensus 103 YVlC~~C~sPdT~-L~~~~~~r~~~l~C~ACGa~~~V 138 (157)
T 2e9h_A 103 FVLCPECENPETD-LHVNPKKQTIGNSCKACGYRGML 138 (157)
T ss_dssp TTSCTTTCCSCCE-EEEETTTTEEEEECSSSCCEEEC
T ss_pred eEECCCCCCCccE-EEEecCCCEEEEEccCCCCCCcc
Confidence 3469999998885 44456678899999999997664
No 23
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=88.88 E-value=0.49 Score=29.63 Aligned_cols=34 Identities=18% Similarity=0.470 Sum_probs=21.0
Q ss_pred cCCCCCCCCceE----EEeecCC------ceEEEEcccccceeE
Q psy3498 25 NCPFCNHEKSCE----VKMDKGR------NSARIACRVCLEDFQ 58 (81)
Q Consensus 25 ~CPfC~~~~sV~----v~i~k~~------~~g~l~C~~C~~~~~ 58 (81)
.||+|+.+..+. ..++-+. .+-...|..||+.+-
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 699999874432 2222232 223567999998764
No 24
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=88.65 E-value=0.47 Score=35.36 Aligned_cols=38 Identities=16% Similarity=0.453 Sum_probs=27.3
Q ss_pred CceecCCCCCCCCceEEEee--cCCceEEEEcccccceeE
Q psy3498 21 DIQFNCPFCNHEKSCEVKMD--KGRNSARIACRVCLEDFQ 58 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~--k~~~~g~l~C~~C~~~~~ 58 (81)
...=.||.||..-++++... ..++.-.++|..|+....
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~ 219 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH 219 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe
Confidence 45568999999877775442 235666899999998764
No 25
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=88.45 E-value=0.86 Score=29.44 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=30.4
Q ss_pred CCC-ceecCCCCCCCCceEEEeecC----CceEEEEcccccceeEe
Q psy3498 19 PLD-IQFNCPFCNHEKSCEVKMDKG----RNSARIACRVCLEDFQT 59 (81)
Q Consensus 19 ~l~-~~F~CPfC~~~~sV~v~i~k~----~~~g~l~C~~C~~~~~~ 59 (81)
.+| +.+.||.|||..++-..+.-. .+.-...|..||-.+..
T Consensus 67 t~p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~ 112 (122)
T 1twf_I 67 TLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS 112 (122)
T ss_dssp TSCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred cccccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEecc
Confidence 344 358999999998887776432 24567789999988765
No 26
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=88.44 E-value=0.56 Score=34.95 Aligned_cols=37 Identities=14% Similarity=0.385 Sum_probs=27.5
Q ss_pred eecCCCCCCCCceEEE-eec------CCceEEEEcccccceeEe
Q psy3498 23 QFNCPFCNHEKSCEVK-MDK------GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~-i~k------~~~~g~l~C~~C~~~~~~ 59 (81)
...||+||+++.+..- ++. ...+-.-.|..|+...-+
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~ 265 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQ 265 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEE
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhh
Confidence 4589999998877665 443 256778899999986654
No 27
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=88.01 E-value=0.34 Score=27.75 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=20.7
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEccccccee
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
...||.||+.--+. .......|+.||.++
T Consensus 18 ~~fCPkCG~~~~ma------~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA------EHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCE------ECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEe------ccCCEEECCCCCCEE
Confidence 67899999843333 112489999999875
No 28
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=87.77 E-value=0.55 Score=34.70 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=28.4
Q ss_pred ceecCCCCCCCCceEEEeecC----CceEEEEcccccceeEe
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKG----RNSARIACRVCLEDFQT 59 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~----~~~g~l~C~~C~~~~~~ 59 (81)
+.|.||.|||...+--.+.-. .+.-...|..||-.+.+
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceec
Confidence 479999999988876665431 34557889999987753
No 29
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=87.56 E-value=0.38 Score=35.60 Aligned_cols=35 Identities=29% Similarity=0.632 Sum_probs=24.7
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
-+-||.||+... -.+....-+|--.|.+|++.||-
T Consensus 34 n~yCPnCG~~~l--~~f~nN~PVaDF~C~~C~EeyEL 68 (257)
T 4esj_A 34 QSYCPNCGNNPL--NHFENNRPVADFYCNHCSEEFEL 68 (257)
T ss_dssp HCCCTTTCCSSC--EEC----CCCEEECTTTCCEEEE
T ss_pred CCcCCCCCChhh--hhccCCCcccccccCCcchhhee
Confidence 467999999532 24444568899999999999985
No 30
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=87.04 E-value=0.26 Score=29.07 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=31.4
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCchhhhhhhh
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDW 74 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~epIDVYs~W 74 (81)
.=.||.|+. .+ + .-.|..||.......++-..|-|-|++.
T Consensus 6 mr~C~~Cgv---YT--L-------k~~CP~CG~~T~~~hParfSp~Dky~~y 45 (60)
T 2apo_B 6 MKKCPKCGL---YT--L-------KEICPKCGEKTVIPKPPKFSLEDRWGKY 45 (60)
T ss_dssp CEECTTTCC---EE--S-------SSBCSSSCSBCBCCCCCCCCTTCTTHHH
T ss_pred ceeCCCCCC---Ee--c-------cccCcCCCCcCCCCCCCCCCCCcchHHH
Confidence 446999975 12 2 1249999999999999999999999875
No 31
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=86.84 E-value=0.32 Score=31.16 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCCCCCCCceEEEeecCCceEEEEcccccceeE
Q psy3498 26 CPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQ 58 (81)
Q Consensus 26 CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~ 58 (81)
||.||+ .+..+.+...+.-.+.|+.|+-.+.
T Consensus 7 Cp~Cgn--~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 7 CIECNN--MLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CSSSCC--CCEECCCTTTCCCCEECSSSCCEEC
T ss_pred CcCCCC--EeeEcccCCCCeeEEECCCCCCeEE
Confidence 999997 4556665555677899999997653
No 32
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=86.80 E-value=0.49 Score=27.12 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=25.5
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcc--cccceeEe
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACR--VCLEDFQT 59 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~--~C~~~~~~ 59 (81)
.|-....||.|..+ ...+. +.+.|. .||..|..
T Consensus 6 ~lL~iL~CP~c~~~----L~~~~----~~L~C~~~~c~~~YPI 40 (56)
T 2kpi_A 6 GLLEILACPACHAP----LEERD----AELICTGQDCGLAYPV 40 (56)
T ss_dssp SCTTSCCCSSSCSC----EEEET----TEEEECSSSCCCEEEE
T ss_pred HHHhheeCCCCCCc----ceecC----CEEEcCCcCCCcEEee
Confidence 46678899999983 22332 889999 99999975
No 33
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=85.56 E-value=0.33 Score=28.94 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=25.9
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
.|-....||.|..+ ...+. ..|.+.|..||..|..
T Consensus 6 ~LLeiL~CP~ck~~----L~~~~--~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 6 QLLEVLACPKDKGP----LRYLE--SEQLLVNERLNLAYRI 40 (67)
T ss_dssp GGTCCCBCTTTCCB----CEEET--TTTEEEETTTTEEEEE
T ss_pred HHHHHhCCCCCCCc----CeEeC--CCCEEEcCCCCccccC
Confidence 46677899999983 23333 3478999999999975
No 34
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=85.07 E-value=0.38 Score=33.67 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=21.9
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccce
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLED 56 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~ 56 (81)
.-+.||.||......+- . .+ ...|.+||..
T Consensus 13 ~~~~CP~Cg~~d~~~~~--~-dg--~~~C~~Cg~~ 42 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLF--S-DG--HTFCYVCEKW 42 (255)
T ss_dssp EEECCSSSCCSSCEEEE--T-TS--CEEETTTCCE
T ss_pred cCCcCCCCCCCCCceEe--C-CC--CeecccCCCc
Confidence 46899999986654443 3 23 5899999975
No 35
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=84.75 E-value=0.47 Score=28.01 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=30.8
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCchhhhhhhh
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDW 74 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~epIDVYs~W 74 (81)
.-.||.||. -++ .-.|-+||+.....-++-..|-|-|++.
T Consensus 5 mr~C~~Cg~-----YTL-------k~~CP~CG~~t~~ahParfSP~Dky~~y 44 (60)
T 2aus_D 5 IRKCPKCGR-----YTL-------KETCPVCGEKTKVAHPPRFSPEDPYGEY 44 (60)
T ss_dssp CEECTTTCC-----EES-------SSBCTTTCSBCEESSCCCCCSCCTTHHH
T ss_pred ceECCCCCC-----EEc-------cccCcCCCCccCCCCCCCCCCCCchHHH
Confidence 346899975 112 1149999999999999999999999875
No 36
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=83.93 E-value=0.7 Score=29.49 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=27.5
Q ss_pred CCCC-ceecCCCCCCCCceEEEeecC----CceEEEEccccccee
Q psy3498 18 EPLD-IQFNCPFCNHEKSCEVKMDKG----RNSARIACRVCLEDF 57 (81)
Q Consensus 18 ~~l~-~~F~CPfC~~~~sV~v~i~k~----~~~g~l~C~~C~~~~ 57 (81)
+.|| +.+.||.|||..++--.+.-. .+.-...|..||-.+
T Consensus 66 ~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 66 PTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp SSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred ccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 3455 459999999988776654421 244567899999765
No 37
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=83.45 E-value=1.3 Score=30.77 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=26.4
Q ss_pred ecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 24 FNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 24 F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
=.||.|+...+.-+ ++.+...-.+.|..||+...-
T Consensus 97 VlC~~C~sPdT~L~-k~~~~r~~~l~C~ACGa~~~V 131 (170)
T 2g2k_A 97 VLCPECENPETDLH-VNPKKQTIGNSCKACGYRGML 131 (170)
T ss_dssp HSCTTTSSSCEEEE-EETTTTEEEEEETTTCCCCCS
T ss_pred EECCCCCCCccEEE-EecCCCEEEEEccccCCcccc
Confidence 46999999877544 343567788999999986543
No 38
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=82.07 E-value=0.4 Score=33.08 Aligned_cols=37 Identities=16% Similarity=0.432 Sum_probs=26.1
Q ss_pred ceecCCCCCCCCceEEEeecC----CceEEEEcccccceeE
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKG----RNSARIACRVCLEDFQ 58 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~----~~~g~l~C~~C~~~~~ 58 (81)
+.|.||.|||..++--.+.-. .+.-...|..||-.+.
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 479999999987764433321 2455778999998765
No 39
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=82.07 E-value=0.84 Score=34.02 Aligned_cols=49 Identities=18% Similarity=0.467 Sum_probs=29.7
Q ss_pred CCCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCchhhhhhhhh
Q psy3498 18 EPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWV 75 (81)
Q Consensus 18 ~~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~epIDVYs~Wi 75 (81)
+-|.-.-.||.|+... -.+..|. .-|.+.|..||+--+. ..||.=++|-
T Consensus 16 ~~l~~~~~Cp~C~~~~-~~lv~D~--~~G~~vC~~CGlVl~e------~~iD~g~EWR 64 (345)
T 4bbr_M 16 PNLNIVLTCPECKVYP-PKIVERF--SEGDVVCALCGLVLSD------KLVDTRSEWR 64 (345)
T ss_dssp ------CCCSSCCCSS-CCEEEEG--GGTEEEETTTCBEEES------CCBCHHHHHT
T ss_pred cccccCCcCCCCCCCC-CceeEEC--CCCcEEeCCCCCCccC------cccccCcccc
Confidence 4566666899999721 1233343 5599999999987653 4577777775
No 40
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=81.94 E-value=0.28 Score=36.36 Aligned_cols=38 Identities=18% Similarity=0.436 Sum_probs=25.9
Q ss_pred CCCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeE
Q psy3498 18 EPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQ 58 (81)
Q Consensus 18 ~~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~ 58 (81)
+-|...-.||.|+.... .+.. +...|.+.|..||.--+
T Consensus 16 ~~~~~~~~Cp~Cg~~~~-~iv~--D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 16 PNLNIVLTCPECKVYPP-KIVE--RFSEGDVVCALCGLVLS 53 (345)
T ss_dssp -CCCCCCCCSTTCCSCC-CCCC--CSSSCSCCCSSSCCCCC
T ss_pred ccccCCCcCcCCCCCCC-ceEE--ECCCCCEecCCCCeEcc
Confidence 45666778999998531 1222 34568999999998654
No 41
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=80.40 E-value=2.5 Score=26.26 Aligned_cols=38 Identities=18% Similarity=0.504 Sum_probs=28.5
Q ss_pred CCCCCcee---cCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 17 IEPLDIQF---NCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 17 ~~~l~~~F---~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
++...+.| .||-|++ +++.++... -.+.|.+||...-.
T Consensus 23 v~~PnS~Fm~VkCp~C~n---~q~VFShA~--t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 23 IQAPNSYFMDVKCAQCQN---IQMIFSNAQ--STIICEKCSAILCK 63 (81)
T ss_dssp SCCCSCCEEEEECSSSCC---EEEEETTCS--SCEECSSSCCEEEE
T ss_pred eeCCCCcEEEeECCCCCC---eeEEEecCc--cEEEccCCCCEEee
Confidence 44556888 9999999 577776644 57899999986543
No 42
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=80.14 E-value=1.1 Score=32.01 Aligned_cols=49 Identities=18% Similarity=0.470 Sum_probs=33.4
Q ss_pred CCCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCchhhhhhhhh
Q psy3498 18 EPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWV 75 (81)
Q Consensus 18 ~~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~epIDVYs~Wi 75 (81)
+-|...-.||.|+... ..+..|. ..|.+.|..||+-.+ +..||-=.+|-
T Consensus 16 ~~ln~~~~CPECGs~~-t~IV~D~--erGE~VCsdCGLVLE------EriID~GPEWR 64 (197)
T 3k1f_M 16 PNLNIVLTCPECKVYP-PKIVERF--SEGDVVCALCGLVLS------DKLVDTRSEWR 64 (197)
T ss_dssp SCCCCCCCCTTTCCSS-CCEEEEG--GGTEEEETTTCBBCC------CCCBCHHHHHH
T ss_pred cccccCeECcCCCCcC-CeEEEeC--CCCEEEEcCCCCCcC------CceeECCCCCc
Confidence 4566666899999832 2233333 459999999998654 24577777775
No 43
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=79.98 E-value=0.7 Score=26.16 Aligned_cols=18 Identities=33% Similarity=0.774 Sum_probs=15.3
Q ss_pred CCCCCceecCCCCCCCCc
Q psy3498 17 IEPLDIQFNCPFCNHEKS 34 (81)
Q Consensus 17 ~~~l~~~F~CPfC~~~~s 34 (81)
-..||.-|.||.|++.++
T Consensus 30 f~~lP~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 30 FEDLPDDWACPVCGASKD 47 (52)
T ss_dssp TTSSCTTCCCSSSCCCTT
T ss_pred hHHCCCCCcCCCCCCcHH
Confidence 456899999999999765
No 44
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=79.70 E-value=0.64 Score=25.86 Aligned_cols=17 Identities=29% Similarity=0.739 Sum_probs=13.9
Q ss_pred CCCCceecCCCCCCCCc
Q psy3498 18 EPLDIQFNCPFCNHEKS 34 (81)
Q Consensus 18 ~~l~~~F~CPfC~~~~s 34 (81)
..||-.|.||.||+.++
T Consensus 25 ~~lP~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 25 DQLPDDWCCPVCGVSKD 41 (46)
T ss_dssp GGSCTTCBCTTTCCBGG
T ss_pred hhCCCCCcCcCCCCcHH
Confidence 46788899999999764
No 45
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=79.12 E-value=0.99 Score=25.50 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=16.5
Q ss_pred CCCCCceecCCCCCCCCceEE
Q psy3498 17 IEPLDIQFNCPFCNHEKSCEV 37 (81)
Q Consensus 17 ~~~l~~~F~CPfC~~~~sV~v 37 (81)
-..||.-|.||.|++.++--.
T Consensus 29 f~~lP~dw~CP~Cg~~K~~F~ 49 (52)
T 1yk4_A 29 FEDLPDDWVCPLCGAPKSEFE 49 (52)
T ss_dssp GGGSCTTCBCTTTCCBGGGEE
T ss_pred HhHCCCCCcCCCCCCCHHHcE
Confidence 356899999999999776443
No 46
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=78.71 E-value=4.1 Score=24.39 Aligned_cols=52 Identities=12% Similarity=0.337 Sum_probs=32.8
Q ss_pred CceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCC----chh--hhhhhhhhhc
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLS----EAI--DVYNDWVDAS 78 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~----epI--DVYs~WiD~c 78 (81)
+.+.=||.|++ .+ ..+. ....+.|..|+..|-+.-...+ +|+ +-|..|+..-
T Consensus 23 ~~~~wCP~C~~--~~--~~~~--~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~n 80 (86)
T 2ct7_A 23 PKFLWCAQCSF--GF--IYER--EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMN 80 (86)
T ss_dssp CCEECCSSSCC--CE--ECCC--SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHHH
T ss_pred CCEeECcCCCc--hh--eecC--CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHhC
Confidence 44445998887 23 2222 2345899999999976443333 555 7899998653
No 47
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=78.34 E-value=0.63 Score=31.20 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=25.2
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEccccccee
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
.=.||.|+...+.-++ ++..-.+.|..||+.-
T Consensus 102 yVlC~~C~sPdT~l~k---~~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 102 FVICHECNRPDTRIIR---EGRISLLKCEACGAKA 133 (138)
T ss_dssp HHHHTCCSSCSSCCEE---ETTTTEEECSTTSCCC
T ss_pred EEECCCCCCcCcEEEE---cCCeEEEEccCCCCCc
Confidence 3469999999887665 3566789999999854
No 48
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.86 E-value=0.24 Score=28.35 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=20.1
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccce
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLED 56 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~ 56 (81)
....||.||+. ...+...|+.||..
T Consensus 13 ~k~iCpkC~a~----------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT----------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE----------ECTTCSSCSSSSSC
T ss_pred CCccCCCCCCc----------CCCCceecCCCCCc
Confidence 45679999983 56788899999975
No 49
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=77.44 E-value=0.86 Score=19.92 Aligned_cols=9 Identities=33% Similarity=1.235 Sum_probs=4.9
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.||.
T Consensus 3 ~~~C~~C~k 11 (27)
T 2kvh_A 3 PFSCSLCPQ 11 (27)
T ss_dssp CEECSSSSC
T ss_pred CccCCCcCh
Confidence 455555553
No 50
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=77.23 E-value=1.9 Score=25.94 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=21.7
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEcccccceeEec
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~ 60 (81)
+|-|| |+.- .+.- .+.....|. ||..++..
T Consensus 4 vv~C~-C~~~---~~~~---~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 4 IFRCD-CGRA---LYSR---EGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEET-TSCC---EEEE---TTCSEEEET-TTEEEECC
T ss_pred EEECC-CCCE---EEEc---CCCcEEECC-CCCeeeec
Confidence 78999 9983 2222 355688997 99999863
No 51
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=77.13 E-value=1.1 Score=25.51 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=17.7
Q ss_pred CCCCCceecCCCCCCCCceEEEe
Q psy3498 17 IEPLDIQFNCPFCNHEKSCEVKM 39 (81)
Q Consensus 17 ~~~l~~~F~CPfC~~~~sV~v~i 39 (81)
-..||.-|.||.|++.++--..+
T Consensus 30 f~~lP~dw~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 30 WEDIPADWVCPDCGVGKIDFEMI 52 (55)
T ss_dssp GGGSCTTCCCTTTCCCGGGEEEC
T ss_pred hhHCCCCCcCCCCCCCHHHceec
Confidence 34689999999999987755444
No 52
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=75.45 E-value=0.53 Score=31.99 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=25.8
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEcccccceeE
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQ 58 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~ 58 (81)
.-.||.|+...+.-++ ++..-.+.|..||+...
T Consensus 104 yVlC~~C~sPdT~L~k---~~r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 104 YVICPVCGSPDTKIIK---RDRFHFLKCEACGAETP 136 (148)
T ss_dssp HSSCSSSCCTTCCCCB---SSSSBCCCCSSSCCCCC
T ss_pred EEECCCCCCcCcEEEE---eCCEEEEEecCCCCCcc
Confidence 4579999999886553 55778899999998643
No 53
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=75.26 E-value=0.8 Score=20.25 Aligned_cols=8 Identities=38% Similarity=1.584 Sum_probs=4.5
Q ss_pred eecCCCCC
Q psy3498 23 QFNCPFCN 30 (81)
Q Consensus 23 ~F~CPfC~ 30 (81)
.|.|+.|+
T Consensus 3 ~~~C~~C~ 10 (27)
T 2kvg_A 3 PYRCPLCR 10 (27)
T ss_dssp TEEETTTT
T ss_pred CcCCCCCC
Confidence 45566655
No 54
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=74.61 E-value=0.2 Score=27.38 Aligned_cols=40 Identities=18% Similarity=0.507 Sum_probs=25.1
Q ss_pred CceecCCCCCCCCc----eEEEeecCCceEEEEcccccceeEeccCC
Q psy3498 21 DIQFNCPFCNHEKS----CEVKMDKGRNSARIACRVCLEDFQTTINF 63 (81)
Q Consensus 21 ~~~F~CPfC~~~~s----V~v~i~k~~~~g~l~C~~C~~~~~~~i~~ 63 (81)
++.|.|+.||..=+ +. .+. .+.....|..||..|....+.
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~-~~H--~~~k~~~C~~C~k~f~~~~~~ 55 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQ-LFD--PMTGTFRCTFCHTEVEEDESA 55 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHH-HEE--TTTTEEBCSSSCCBCEECTTC
T ss_pred CCCccCCCCCchhccHHHhH-hhc--CCCCCEECCCCCCccccCccc
Confidence 57899999996210 11 111 122357899999999865443
No 55
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=73.93 E-value=1.3 Score=19.28 Aligned_cols=9 Identities=22% Similarity=1.257 Sum_probs=4.6
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 3 ~~~C~~C~~ 11 (30)
T 2m0d_A 3 PYQCDYCGR 11 (30)
T ss_dssp CEECTTTCC
T ss_pred CccCCCCCc
Confidence 455555553
No 56
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=73.67 E-value=0.33 Score=25.55 Aligned_cols=37 Identities=19% Similarity=0.533 Sum_probs=21.3
Q ss_pred eecCCCCCCCCceEEEeec----CCceEEEEcccccceeEe
Q psy3498 23 QFNCPFCNHEKSCEVKMDK----GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k----~~~~g~l~C~~C~~~~~~ 59 (81)
.|.|+.|+..-+-.-.+.. -.+.....|..|+..|..
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 5899999863221111111 122334789999998864
No 57
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=73.41 E-value=1.9 Score=25.81 Aligned_cols=29 Identities=14% Similarity=0.620 Sum_probs=20.4
Q ss_pred CCceecCCCCCCCCceEEEeecCCceEEEEcccccc
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLE 55 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~ 55 (81)
.+-.|.|+.||++ +.++.. ..+.|..||.
T Consensus 25 ~~v~Y~C~~CG~~----~e~~~~---d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSK----LSLSRT---DAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCE----ECCCTT---STTCCSSSCC
T ss_pred ceEEEECCCCCCc----ceeCCC---CCccCCCCCc
Confidence 4568999999994 333322 2358999997
No 58
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=73.36 E-value=0.4 Score=29.80 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=21.8
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEccccccee
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
.+.||.|+..+.+ -.........|+.|+...
T Consensus 5 ~~~c~~c~~~n~~----p~~~~~~~~~~~~~~~~~ 35 (148)
T 3p2a_A 5 NTVCTACMATNRL----PEERIDDGAKCGRCGHSL 35 (148)
T ss_dssp EEECTTTCCEEEE----ESSCSCSCCBCTTTCCBT
T ss_pred EEECcccccccCC----CCcccccCCcchhcCCcc
Confidence 6889999996533 334444566799999854
No 59
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=73.33 E-value=1.2 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=19.0
Q ss_pred CCCCCceecCCCCCCCCceEEEee
Q psy3498 17 IEPLDIQFNCPFCNHEKSCEVKMD 40 (81)
Q Consensus 17 ~~~l~~~F~CPfC~~~~sV~v~i~ 40 (81)
-..||.-|.||.|++.++--..+.
T Consensus 34 f~~lPddw~CP~Cga~K~~F~~~~ 57 (70)
T 1dx8_A 34 FVDLSDSFMCPACRSPKNQFKSIK 57 (70)
T ss_dssp GGGSCTTCBCTTTCCBGGGEEECC
T ss_pred hhhCCCCCcCCCCCCCHHHceEcc
Confidence 356899999999999887666653
No 60
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=72.90 E-value=1.3 Score=20.77 Aligned_cols=11 Identities=36% Similarity=0.923 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (37)
T 1p7a_A 9 IKPFQCPDCDR 19 (37)
T ss_dssp SSSBCCTTTCC
T ss_pred CCCccCCCCCc
Confidence 46799999986
No 61
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=72.52 E-value=2.3 Score=26.27 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=8.9
Q ss_pred CCCceecCCCCCCCCceE
Q psy3498 19 PLDIQFNCPFCNHEKSCE 36 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~ 36 (81)
.||.-|.||.|++.++--
T Consensus 56 dlPddW~CPvCga~K~~F 73 (81)
T 2kn9_A 56 DIPDDWSCPDCGAAKSDF 73 (81)
T ss_dssp TSCTTCCCTTTCCCGGGE
T ss_pred HCCCCCcCCCCCCCHHHc
Confidence 345555555555544433
No 62
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=72.42 E-value=2.1 Score=26.48 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=21.4
Q ss_pred eecCCCCCCCC-ceEEEeecCCceEEEEccccccee
Q psy3498 23 QFNCPFCNHEK-SCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 23 ~F~CPfC~~~~-sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
...||||+-.. |..|.. . .+.-.|-.||...
T Consensus 37 ~~~CPfh~e~~pSf~V~~--~--k~~~~Cf~cg~gG 68 (103)
T 1d0q_A 37 FGLCPFHGEKTPSFSVSP--E--KQIFHCFGCGAGG 68 (103)
T ss_dssp EECCSSSCCSSCCEEEET--T--TTEEEETTTCCEE
T ss_pred EEECCCCCCCCCcEEEEc--C--CCEEEECCCCCCC
Confidence 56899998533 555543 2 3578999999753
No 63
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=72.00 E-value=1.3 Score=19.17 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=5.1
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 2 ~~~C~~C~~ 10 (29)
T 1ard_A 2 SFVCEVCTR 10 (29)
T ss_dssp CCBCTTTCC
T ss_pred CeECCCCCc
Confidence 356666654
No 64
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=72.00 E-value=1.4 Score=25.28 Aligned_cols=19 Identities=21% Similarity=0.579 Sum_probs=15.8
Q ss_pred CCCCCceecCCCCCCCCce
Q psy3498 17 IEPLDIQFNCPFCNHEKSC 35 (81)
Q Consensus 17 ~~~l~~~F~CPfC~~~~sV 35 (81)
-..||--|.||.|++.++-
T Consensus 30 fe~lP~dw~CP~Cg~~K~~ 48 (54)
T 4rxn_A 30 FKDIPDDWVCPLCGVGKDE 48 (54)
T ss_dssp GGGSCTTCBCTTTCCBGGG
T ss_pred hhHCCCCCcCcCCCCcHHH
Confidence 4678999999999997653
No 65
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=71.89 E-value=0.69 Score=30.68 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=23.6
Q ss_pred CCceecCCCCCCCCceEEEeecCCceEEEEccccccee
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
..=.| ||.||+ ....+-++..+.....|+.|+-.+
T Consensus 22 ~~~~F-CPeCgN--mL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRF-CRDCNN--MLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCB-CTTTCC--BCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCee-CCCCCC--EeeECccCCCceeEEECCCCCCcE
Confidence 33455 999997 344444444566789999999654
No 66
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=71.67 E-value=1.3 Score=19.04 Aligned_cols=9 Identities=33% Similarity=1.320 Sum_probs=5.0
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 2 ~~~C~~C~~ 10 (29)
T 2m0e_A 2 EHKCPHCDK 10 (29)
T ss_dssp CCCCSSCCC
T ss_pred CCcCCCCCc
Confidence 355666654
No 67
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=71.59 E-value=1.6 Score=18.94 Aligned_cols=9 Identities=22% Similarity=1.121 Sum_probs=4.5
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 3 ~~~C~~C~k 11 (28)
T 2kvf_A 3 PYSCSVCGK 11 (28)
T ss_dssp SEECSSSCC
T ss_pred CccCCCCCc
Confidence 355555543
No 68
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.13 E-value=1.5 Score=20.34 Aligned_cols=11 Identities=27% Similarity=0.920 Sum_probs=8.0
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elt_A 7 GKPYKCPQCSY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCCCCCCCCc
Confidence 45688888875
No 69
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=71.10 E-value=1.4 Score=19.17 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=3.7
Q ss_pred ccccccee
Q psy3498 50 CRVCLEDF 57 (81)
Q Consensus 50 C~~C~~~~ 57 (81)
|..||..|
T Consensus 5 C~~C~k~f 12 (29)
T 1rik_A 5 CPECPKRF 12 (29)
T ss_dssp CSSSSCEE
T ss_pred CCCCCchh
Confidence 44444444
No 70
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=70.94 E-value=3.3 Score=27.08 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=16.4
Q ss_pred cCCCCCCCCceEEEeecCCc
Q psy3498 25 NCPFCNHEKSCEVKMDKGRN 44 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~ 44 (81)
.||.||++.||++.-.+..-
T Consensus 54 kcprcgaegsvsivetkngy 73 (131)
T 2x5c_A 54 KCPRCGAEGSVSIVETKNGY 73 (131)
T ss_dssp ECTTTSCEEEEEEEECTTSC
T ss_pred cCCCCCCccceEEEEecCCc
Confidence 69999999999987766543
No 71
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.86 E-value=1.6 Score=20.33 Aligned_cols=11 Identities=36% Similarity=1.077 Sum_probs=8.2
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2els_A 7 GKIFTCEYCNK 17 (36)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEECCCCCc
Confidence 35688888875
No 72
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=70.85 E-value=2.6 Score=27.41 Aligned_cols=33 Identities=21% Similarity=0.591 Sum_probs=22.4
Q ss_pred CCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
....|.|+.||+ -|++ + ..+-+.++| ||+..+-
T Consensus 4 ~~~fYkC~~CGn--ivev-~--~~g~~~l~C--CG~~m~~ 36 (126)
T 1vzi_A 4 RLQVYKCEVCGN--IVEV-L--NGGIGELVC--CNQDMKL 36 (126)
T ss_dssp TTCEEECTTTCC--EEEE-E--ECCSSCEEE--TTEECEE
T ss_pred cCcEEEcCCCCe--EEEE-E--cCCCcceec--CCccccc
Confidence 357999999997 2333 3 245577888 8877654
No 73
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.02 E-value=1.6 Score=20.35 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=8.1
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
.+.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elq_A 7 GKPFKCSLCEY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCccCCCCCc
Confidence 45688888875
No 74
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=69.78 E-value=1.9 Score=29.23 Aligned_cols=27 Identities=33% Similarity=0.710 Sum_probs=18.9
Q ss_pred CCceecCCCCCCCCceEEEeecCCceEEEEcccccc
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLE 55 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~ 55 (81)
.++.+.|+.||+ |.. . . +--.|.+||.
T Consensus 135 ~~~~~~C~~CG~---i~~--~--~--~p~~CP~Cg~ 161 (170)
T 3pwf_A 135 IKKVYICPICGY---TAV--D--E--APEYCPVCGA 161 (170)
T ss_dssp CSCEEECTTTCC---EEE--S--C--CCSBCTTTCC
T ss_pred CCCeeEeCCCCC---eeC--C--C--CCCCCCCCCC
Confidence 468999999999 332 1 1 1128999996
No 75
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=69.57 E-value=1.6 Score=19.16 Aligned_cols=9 Identities=33% Similarity=1.198 Sum_probs=5.1
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 2 ~~~C~~C~k 10 (30)
T 1paa_A 2 AYACGLCNR 10 (30)
T ss_dssp CSBCTTTCC
T ss_pred CcCCcccCc
Confidence 356666654
No 76
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=69.52 E-value=1.7 Score=19.86 Aligned_cols=10 Identities=20% Similarity=0.766 Sum_probs=6.8
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
+.|.|+.|+.
T Consensus 6 k~~~C~~C~k 15 (35)
T 2elx_A 6 SGYVCALCLK 15 (35)
T ss_dssp CSEECSSSCC
T ss_pred CCeECCCCcc
Confidence 4577777765
No 77
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.21 E-value=1.7 Score=20.33 Aligned_cols=11 Identities=27% Similarity=1.141 Sum_probs=7.9
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elp_A 7 GRAMKCPYCDF 17 (37)
T ss_dssp CCCEECSSSSC
T ss_pred CCCeECCCCCh
Confidence 35688888875
No 78
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=69.21 E-value=1.7 Score=18.74 Aligned_cols=10 Identities=40% Similarity=1.002 Sum_probs=4.8
Q ss_pred EcccccceeE
Q psy3498 49 ACRVCLEDFQ 58 (81)
Q Consensus 49 ~C~~C~~~~~ 58 (81)
.|..||..|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2m0f_A 4 KCRECGKQFT 13 (29)
T ss_dssp ECTTTSCEES
T ss_pred cCCCCCCccC
Confidence 3555555443
No 79
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=69.17 E-value=6.9 Score=20.08 Aligned_cols=30 Identities=23% Similarity=0.609 Sum_probs=19.0
Q ss_pred CCceecCCCCCCCCceEEEeecCCceEEEEcccccce
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLED 56 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~ 56 (81)
.-.+|.|+.||+ -|++.. .+-+.+.| ||+.
T Consensus 3 ~~~fY~C~~CGn--ivev~~---~g~~~l~C--CG~~ 32 (36)
T 1dxg_A 3 EGDVYKCELCGQ--VVKVLE---EGGGTLVC--CGED 32 (36)
T ss_dssp TTCEEECTTTCC--EEEEEE---CCSSCEEE--TTEE
T ss_pred cccEEEcCCCCc--EEEEEe---CCCcCEEe--CCcc
Confidence 457999999997 344433 34466666 5553
No 80
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=71.95 E-value=1 Score=19.48 Aligned_cols=9 Identities=22% Similarity=0.851 Sum_probs=4.6
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.||.
T Consensus 2 p~~C~~C~k 10 (26)
T 2lvu_A 2 PYVCERCGK 10 (26)
Confidence 355555553
No 81
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=68.12 E-value=4.7 Score=25.87 Aligned_cols=40 Identities=28% Similarity=0.515 Sum_probs=29.4
Q ss_pred CCCCceecCCCCCCCCceEEEeec---CCceEEEEcccccceeEe
Q psy3498 18 EPLDIQFNCPFCNHEKSCEVKMDK---GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 18 ~~l~~~F~CPfC~~~~sV~v~i~k---~~~~g~l~C~~C~~~~~~ 59 (81)
+.+--.|+|-.|++-++ =.|.+ ..|+-.+.|..|...+-.
T Consensus 8 ~~~~l~FTC~~C~tRs~--k~iSk~aY~~GvViv~C~gC~n~HlI 50 (100)
T 2e2z_A 8 PKMMIAFTCKKCNTRSS--HTMSKQAYEKGTVLISCPHCKVRHLI 50 (100)
T ss_dssp CEEEEEEEETTTTEEEE--EEEEHHHHHTSEEEEECTTTCCEEES
T ss_pred CcEEEEEEccCCCCcch--hhcCHHHhhCCEEEEEcCCCccceEe
Confidence 45677999999998322 23333 369999999999997653
No 82
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=68.09 E-value=1.8 Score=21.32 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=6.3
Q ss_pred CceecCCCCC
Q psy3498 21 DIQFNCPFCN 30 (81)
Q Consensus 21 ~~~F~CPfC~ 30 (81)
++.|.||.||
T Consensus 36 ~~~~~C~~cg 45 (45)
T 2epq_A 36 SVGKSGPSSG 45 (45)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCcCCC
Confidence 3456777765
No 83
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.92 E-value=2.2 Score=20.22 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=7.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elm_A 7 GHLYYCSQCHY 17 (37)
T ss_dssp SCEEECSSSSC
T ss_pred CcCeECCCCCc
Confidence 35677777775
No 84
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.71 E-value=0.86 Score=26.23 Aligned_cols=31 Identities=26% Similarity=0.670 Sum_probs=23.6
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEccc--ccceeEe
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRV--CLEDFQT 59 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~--C~~~~~~ 59 (81)
.=+||.|+. -|.+..+=.++.|.. |+..|-.
T Consensus 6 ~k~CP~C~~------~Iek~~GCnhmtC~~~~C~~~FCw 38 (60)
T 1wd2_A 6 TKECPKCHV------TIEKDGGCNHMVCRNQNCKAEFCW 38 (60)
T ss_dssp CCCCTTTCC------CCSSCCSCCSSSCCSSGGGSCCSS
T ss_pred ceECcCCCC------eeEeCCCCCcEEECCCCcCCEEee
Confidence 347999997 356667777889998 9988753
No 85
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=66.65 E-value=1.8 Score=18.70 Aligned_cols=8 Identities=25% Similarity=1.435 Sum_probs=4.5
Q ss_pred ecCCCCCC
Q psy3498 24 FNCPFCNH 31 (81)
Q Consensus 24 F~CPfC~~ 31 (81)
|.|+.|+.
T Consensus 3 ~~C~~C~k 10 (30)
T 1klr_A 3 YQCQYCEF 10 (30)
T ss_dssp CCCSSSSC
T ss_pred ccCCCCCC
Confidence 55555554
No 86
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=66.23 E-value=4.1 Score=25.35 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=26.4
Q ss_pred CCCCCcee---cCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 17 IEPLDIQF---NCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 17 ~~~l~~~F---~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
++...+.| .||-|++ +++.++... ..+.|.+||..-..
T Consensus 25 v~~PnS~Fm~VkCp~C~~---~q~VFSha~--t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 25 VQGPRSYFLDVKCPGCLN---ITTVFSHAQ--TAVTCESCSTILCT 65 (82)
T ss_dssp SCCCCCCEEEEECTTSCS---CEEEESBCS--SCCCCSSSCCCCEE
T ss_pred ccCCCCcEEEEECCCCCC---eeEEEecCC--eEEEccccCCEEec
Confidence 34444566 7999999 466676644 57899999976543
No 87
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=66.08 E-value=6.7 Score=23.44 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=23.3
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
.||-|++ +++.++... -.+.|.+||..-..
T Consensus 9 KCp~C~n---iq~VFShA~--tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 9 KCPDCEH---EQVIFDHPS--TIVKCIICGRTVAE 38 (66)
T ss_dssp ECTTTCC---EEEEESSCS--SCEECSSSCCEEEE
T ss_pred ECCCCCC---ceEEEecCc--eEEEcccCCCEEee
Confidence 6999999 577776644 57899999986643
No 88
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=69.54 E-value=1.2 Score=19.47 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=5.8
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
+.|.|+.|+.
T Consensus 2 k~~~C~~C~k 11 (30)
T 2lvr_A 2 KPYVCIHCQR 11 (30)
Confidence 3466666664
No 89
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=65.88 E-value=1.1 Score=26.50 Aligned_cols=30 Identities=20% Similarity=0.555 Sum_probs=22.3
Q ss_pred CceecCCCCCCCCceEEEeecCCceEEEEccccccee
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
+-.|.|..||++.. ++. ...+.|..||-+-
T Consensus 19 ~v~Y~C~~Cg~~~~----l~~---~~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNT----IQA---KEVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCC----CCS---SSCCCCSSSCCCC
T ss_pred CeEEECCCCCCeee----cCC---CCceECCCCCcEE
Confidence 56899999999655 322 2468999999754
No 90
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.77 E-value=6.8 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.414 Sum_probs=26.3
Q ss_pred CCCCcee---cCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 18 EPLDIQF---NCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 18 ~~l~~~F---~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
+...+.| .||-|++ +++.+++.. -.+.|.+||..-..
T Consensus 7 ~~PnS~Fm~VkCp~C~~---~q~VFSha~--t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 7 PMPRSRFLRVKCIDCGN---EQIVFSHPA--TKVRCLICGATLVE 46 (63)
T ss_dssp CCCSCCEEEEECSSSCC---EEEEESSCS--SCEECSSSCCEEEE
T ss_pred cCCCCcEEEEECCCCCC---eeEEEecCC--eEEEccCcCCEEec
Confidence 3334555 7999999 566676644 67899999986654
No 91
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.68 E-value=2.3 Score=19.71 Aligned_cols=11 Identities=18% Similarity=0.999 Sum_probs=7.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elv_A 7 GLLYDCHICER 17 (36)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 35688888875
No 92
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=64.82 E-value=3.3 Score=25.85 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=8.7
Q ss_pred CCCceecCCCCCCCCc
Q psy3498 19 PLDIQFNCPFCNHEKS 34 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~s 34 (81)
.||--|.||.||+.++
T Consensus 64 dlPddW~CPvCga~K~ 79 (87)
T 1s24_A 64 DIPDDWCCPDCGATKE 79 (87)
T ss_dssp GCCTTCCCSSSCCCGG
T ss_pred HCCCCCCCCCCCCCHH
Confidence 4555555666655544
No 93
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.62 E-value=2.4 Score=19.50 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 7 ~~~~~C~~C~k 17 (36)
T 2elr_A 7 GKTHLCDMCGK 17 (36)
T ss_dssp CSSCBCTTTCC
T ss_pred CCCeecCcCCC
Confidence 45688888885
No 94
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=64.48 E-value=2.5 Score=19.36 Aligned_cols=10 Identities=30% Similarity=0.736 Sum_probs=6.3
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
+.|.|+.|+.
T Consensus 6 k~~~C~~C~k 15 (35)
T 1srk_A 6 RPFVCRICLS 15 (35)
T ss_dssp SCEECSSSCC
T ss_pred cCeeCCCCCc
Confidence 4567777764
No 95
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.05 E-value=2.4 Score=20.31 Aligned_cols=11 Identities=18% Similarity=0.803 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2ytb_A 9 EKPYRCDQCGK 19 (42)
T ss_dssp CCSBCCTTTTC
T ss_pred CCCeeCCCccc
Confidence 46799999986
No 96
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=63.82 E-value=2.1 Score=27.19 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=7.6
Q ss_pred cccccceeEeccCCCCch
Q psy3498 50 CRVCLEDFQTTINFLSEA 67 (81)
Q Consensus 50 C~~C~~~~~~~i~~L~ep 67 (81)
|..||+.|.-+--+-.|+
T Consensus 54 CP~CgEEFyG~~Lp~~Ea 71 (95)
T 2k5c_A 54 CPVCGEEFYGKTLPRREA 71 (95)
T ss_dssp CTTTCCEEETTSSCTTTH
T ss_pred CCCccHHHhcccCChHHH
Confidence 444444444433333333
No 97
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=63.36 E-value=3.9 Score=26.82 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.2
Q ss_pred CceecCCCCCCCC
Q psy3498 21 DIQFNCPFCNHEK 33 (81)
Q Consensus 21 ~~~F~CPfC~~~~ 33 (81)
+..+.||.||+.+
T Consensus 105 ~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 105 HAFLACPKCGSHD 117 (139)
T ss_dssp GGGCSCSSSSCCC
T ss_pred ccCCcCccccCCc
Confidence 3478899999964
No 98
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=62.90 E-value=2.4 Score=19.48 Aligned_cols=9 Identities=44% Similarity=1.276 Sum_probs=5.2
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 2 p~~C~~C~k 10 (32)
T 2kfq_A 2 AFACPACPK 10 (32)
T ss_dssp CSSSSSSCT
T ss_pred CCCCCCCCc
Confidence 356666654
No 99
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=62.79 E-value=1.9 Score=24.85 Aligned_cols=13 Identities=23% Similarity=0.766 Sum_probs=10.4
Q ss_pred ceecCCCCCCCCc
Q psy3498 22 IQFNCPFCNHEKS 34 (81)
Q Consensus 22 ~~F~CPfC~~~~s 34 (81)
+.|.||||++.+.
T Consensus 32 ~~W~C~~C~~~N~ 44 (59)
T 2yrc_A 32 KLWACNFCYQRNQ 44 (59)
T ss_dssp TEEECSSSCCEEE
T ss_pred CEEEcccCCCcCC
Confidence 5799999998554
No 100
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=66.61 E-value=1.6 Score=19.16 Aligned_cols=9 Identities=22% Similarity=0.870 Sum_probs=4.7
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 2lvt_A 2 PCQCVMCGK 10 (29)
Confidence 355555553
No 101
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.44 E-value=2.1 Score=19.92 Aligned_cols=11 Identities=27% Similarity=1.093 Sum_probs=7.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elo_A 7 GRSYSCPVCEK 17 (37)
T ss_dssp CCCCEETTTTE
T ss_pred CCCcCCCCCCC
Confidence 35688888874
No 102
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=62.40 E-value=2.9 Score=19.86 Aligned_cols=10 Identities=30% Similarity=1.172 Sum_probs=6.6
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
+.|.|+.|+.
T Consensus 5 k~~~C~~C~k 14 (39)
T 1njq_A 5 RSYTCSFCKR 14 (39)
T ss_dssp SSEECTTTCC
T ss_pred CceECCCCCc
Confidence 4577777764
No 103
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.04 E-value=0.21 Score=26.95 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEec
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~ 60 (81)
-++.|.|+.|+..-.-.-.+.. .....|..||..|...
T Consensus 15 ~~~~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 15 GDRSQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp CCSEEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCC
T ss_pred CCCCeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCH
Confidence 3578999999962111111111 2346799999888643
No 104
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=61.74 E-value=2.6 Score=26.56 Aligned_cols=31 Identities=23% Similarity=0.654 Sum_probs=21.7
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcccccce
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLED 56 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~ 56 (81)
.+-..|.|+ ||+ . .+.+++ +-...|..||..
T Consensus 44 a~KRFFkC~-C~~-R--t~sl~r---~P~~~C~~Cg~~ 74 (92)
T 2kwq_A 44 GVKRFFKCP-CGN-R--TISLDR---LPKKHCSTCGLF 74 (92)
T ss_dssp EECEEEECT-TSC-E--EEESSS---SCCSCCTTTCSC
T ss_pred eeEEEEECC-CCC-c--eeEeee---CCCCCCCCCCCC
Confidence 345789998 999 3 444543 445589999974
No 105
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=61.28 E-value=3 Score=20.00 Aligned_cols=11 Identities=18% Similarity=0.794 Sum_probs=8.1
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (42)
T 2el5_A 8 ENPYECSECGK 18 (42)
T ss_dssp CCSEECSSSCC
T ss_pred CCCccCCCcCh
Confidence 35688888875
No 106
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.25 E-value=3.1 Score=19.91 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=8.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (41)
T 2ept_A 8 QRVYECQECGK 18 (41)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 45688888875
No 107
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.84 E-value=3.1 Score=20.06 Aligned_cols=11 Identities=18% Similarity=0.785 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2eof_A 10 EKPYECNECQK 20 (44)
T ss_dssp CCSEECTTTCC
T ss_pred CCCeECCCCCc
Confidence 45688888885
No 108
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=60.78 E-value=2.8 Score=19.43 Aligned_cols=9 Identities=44% Similarity=1.279 Sum_probs=5.2
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 2 p~~C~~C~k 10 (33)
T 1rim_A 2 KFACPECPK 10 (33)
T ss_dssp CCCCSSSCC
T ss_pred cccCCCCCc
Confidence 356666654
No 109
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.77 E-value=3.2 Score=20.33 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eow_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCCEECTTSCC
T ss_pred CCCeeccccCC
Confidence 46789999885
No 110
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.55 E-value=3.1 Score=19.87 Aligned_cols=11 Identities=18% Similarity=0.818 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (42)
T 2yte_A 8 EKPYSCAECKE 18 (42)
T ss_dssp CCSCBCTTTCC
T ss_pred CCCeECCCCCC
Confidence 45688999885
No 111
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=60.43 E-value=5.3 Score=26.04 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=18.1
Q ss_pred ceecCCC-CCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 22 IQFNCPF-CNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 22 ~~F~CPf-C~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
..|.|+. ||+ |...+ ..+-+.++| ||+..+.
T Consensus 6 ~fYkC~~~CGn---ivev~--~~g~~~l~C--CG~~m~~ 37 (128)
T 1y07_A 6 SFFLQKESAGF---FLGMD--APAGSSVAC--GSEVLRA 37 (128)
T ss_dssp EEECC-----C---EEEES--CCTTCEEEE--TTEEEEC
T ss_pred cEEECCCCCCC---EEEEE--cCCCcceee--cCccccc
Confidence 6899999 987 22222 356688888 8887764
No 112
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.30 E-value=3.1 Score=20.24 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=8.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2yu5_A 10 ENPFKCSKCDR 20 (44)
T ss_dssp CCSEECSSSSC
T ss_pred CCCeECCCCCc
Confidence 45688888875
No 113
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.18 E-value=3.2 Score=20.39 Aligned_cols=11 Identities=27% Similarity=0.778 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2en3_A 10 EKPFQCKECGM 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCcccCh
Confidence 45688988885
No 114
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.16 E-value=3.2 Score=20.31 Aligned_cols=11 Identities=27% Similarity=0.881 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytf_A 10 EKPFECSECQK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCcCCCCCCc
Confidence 46799999985
No 115
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.12 E-value=3.3 Score=19.81 Aligned_cols=11 Identities=18% Similarity=0.794 Sum_probs=8.1
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2en2_A 9 EKPYKCETCGA 19 (42)
T ss_dssp SCSEECTTTCC
T ss_pred CCCEeCCCcCh
Confidence 45688888875
No 116
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.39 E-value=3.5 Score=20.30 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoy_A 10 EKCFKCNKCEK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CCCEECcCCCC
Confidence 45688888885
No 117
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.19 E-value=3.1 Score=20.06 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2en7_A 10 MKPYVCNECGK 20 (44)
T ss_dssp SSSSCCTTTCC
T ss_pred CcCeECCCCCC
Confidence 46799999986
No 118
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=58.99 E-value=2.6 Score=21.41 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 6 ekp~~C~~CgK 16 (36)
T 1fv5_A 6 PARFMCLPCGI 16 (36)
T ss_dssp CCCCEETTTTE
T ss_pred ccCeECCCCCC
Confidence 46788888875
No 119
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.80 E-value=3.5 Score=20.17 Aligned_cols=11 Identities=18% Similarity=0.776 Sum_probs=8.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2epv_A 10 EKPYECNECGK 20 (44)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 45788888875
No 120
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=58.79 E-value=3.7 Score=19.58 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=8.0
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 9 ~~~~~C~~C~k 19 (42)
T 2epc_A 9 ETPYLCGQCGK 19 (42)
T ss_dssp SCCEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 35688888875
No 121
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=58.77 E-value=3.4 Score=20.36 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emj_A 10 EKPFECAECGK 20 (46)
T ss_dssp CCSEECSSSSC
T ss_pred CCCEECCCCCc
Confidence 46788988885
No 122
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.67 E-value=3.6 Score=19.98 Aligned_cols=11 Identities=18% Similarity=0.760 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2emb_A 10 RKRYECSKCQA 20 (44)
T ss_dssp CSSEECTTTCC
T ss_pred CCCeECCCCCC
Confidence 45688888885
No 123
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.63 E-value=3.5 Score=20.22 Aligned_cols=11 Identities=18% Similarity=0.794 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep3_A 10 EKPYRCAECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 46789999885
No 124
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.51 E-value=3.6 Score=20.16 Aligned_cols=11 Identities=18% Similarity=0.848 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2emi_A 10 ERHYECSECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCCCCCCCCc
Confidence 45688988885
No 125
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=58.48 E-value=1 Score=25.60 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=6.2
Q ss_pred EEcccccceeE
Q psy3498 48 IACRVCLEDFQ 58 (81)
Q Consensus 48 l~C~~C~~~~~ 58 (81)
..|..|+..|.
T Consensus 65 ~~C~~C~~~f~ 75 (96)
T 2dmd_A 65 FKCQICPYASR 75 (96)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCCccC
Confidence 45666665554
No 126
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.46 E-value=3.6 Score=19.77 Aligned_cols=11 Identities=18% Similarity=0.854 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2eos_A 9 EKPYPCEICGT 19 (42)
T ss_dssp SCCBCCSSSCC
T ss_pred CCCEECCCCCC
Confidence 46788988886
No 127
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.35 E-value=3.4 Score=20.25 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=9.0
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq1_A 10 EKPYKCNECGK 20 (46)
T ss_dssp SCCCCCTTTTC
T ss_pred CCCeECCcCCh
Confidence 46799999986
No 128
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.29 E-value=3.6 Score=20.11 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yts_A 10 EKPYICNECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCEECCCCCh
Confidence 45688988885
No 129
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.47 E-value=3.7 Score=20.15 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2enf_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CcCeECCCCCc
Confidence 46799999986
No 130
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.29 E-value=3.8 Score=20.07 Aligned_cols=11 Identities=18% Similarity=0.920 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2em3_A 10 EKPYECKVCSK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 45689999885
No 131
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.27 E-value=3.9 Score=20.10 Aligned_cols=11 Identities=18% Similarity=0.794 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yto_A 10 EKPYKCSDCGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCEECcccCC
Confidence 45688888875
No 132
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.08 E-value=3.9 Score=20.05 Aligned_cols=11 Identities=18% Similarity=0.700 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytj_A 10 EKPYICAECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCh
Confidence 46799999985
No 133
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.85 E-value=3.2 Score=20.46 Aligned_cols=11 Identities=18% Similarity=0.896 Sum_probs=8.2
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoz_A 10 EKPYSCNVCGK 20 (46)
T ss_dssp CCSEEETTTTE
T ss_pred CCCeECcccCh
Confidence 45688888875
No 134
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=56.78 E-value=15 Score=28.42 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=25.9
Q ss_pred CceecCCCCCCCCceEEEeec-----CCceEEEEcccccceeE
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDK-----GRNSARIACRVCLEDFQ 58 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k-----~~~~g~l~C~~C~~~~~ 58 (81)
...-.||.|++.......+.. +-.+-...|..||-+..
T Consensus 218 ~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 218 QFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp EEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred eecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 355679999986554443322 33567889999998763
No 135
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.72 E-value=4.1 Score=19.89 Aligned_cols=11 Identities=18% Similarity=0.736 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
.+.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2yrj_A 10 EKPYRCGECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 45688988885
No 136
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.59 E-value=4.1 Score=19.96 Aligned_cols=11 Identities=18% Similarity=0.806 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emh_A 10 ERPYICTVCGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CCCcCCCCCCc
Confidence 46789999885
No 137
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.45 E-value=4 Score=19.91 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2epw_A 10 EKPCKCTECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCCCCCC
Confidence 45699999985
No 138
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.27 E-value=4 Score=19.95 Aligned_cols=11 Identities=18% Similarity=0.794 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eov_A 10 EKPYKCSDCGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CCCccCCccCh
Confidence 45699999986
No 139
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.19 E-value=4.1 Score=20.01 Aligned_cols=11 Identities=18% Similarity=0.661 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em4_A 10 QRPYECIECGK 20 (46)
T ss_dssp SSSEECSSSCC
T ss_pred CcCcCCCCCCC
Confidence 45688888885
No 140
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.10 E-value=4.2 Score=19.97 Aligned_cols=11 Identities=18% Similarity=0.848 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytp_A 10 ERHYECSECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCcCCc
Confidence 45688888885
No 141
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.03 E-value=4.1 Score=19.87 Aligned_cols=11 Identities=18% Similarity=0.960 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eme_A 10 EKPYVCDYCGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCCh
Confidence 45699999885
No 142
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=55.99 E-value=4.1 Score=19.86 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em9_A 10 EKPYNCKECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCcccc
Confidence 46789999885
No 143
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=55.90 E-value=0.82 Score=30.68 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCceecCCCCCCCCceEEEeecCCceEEEEccccccee
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
+.+.=.||.|+...+.-+ ++...-.+.|..||+.-
T Consensus 100 I~~yVlC~~C~sPdT~l~---k~~r~~~l~C~ACGa~~ 134 (139)
T 3cw2_K 100 LKAYVECSTCKSLDTILK---KEKKSWYIVCLACGAQT 134 (139)
T ss_dssp SSCCSSCCSSSSSCCCSC---SSCSTTTSSCCC-----
T ss_pred HHHeeECCCCCCcCcEEE---EeCCeEEEEecCCCCCC
Confidence 445567999999877544 35567789999999854
No 144
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.80 E-value=4.2 Score=19.89 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ene_A 10 EKPYKCNECGK 20 (46)
T ss_dssp SSSEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 45688998885
No 145
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.79 E-value=3.1 Score=20.16 Aligned_cols=11 Identities=18% Similarity=0.688 Sum_probs=8.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2eoj_A 10 ENPYECCECGK 20 (44)
T ss_dssp CCSCEETTTTE
T ss_pred CcCeeCCCCCC
Confidence 45688888874
No 146
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.78 E-value=4.1 Score=19.93 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emg_A 10 ENPFICSECGK 20 (46)
T ss_dssp CCSCBCTTTCC
T ss_pred CCCEECCccCc
Confidence 45799999986
No 147
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.61 E-value=4.1 Score=20.02 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yth_A 10 EKPFQCEECGK 20 (46)
T ss_dssp SSSBCCSSSCC
T ss_pred CcCCCCCCCCc
Confidence 46799999986
No 148
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.53 E-value=4 Score=20.01 Aligned_cols=11 Identities=27% Similarity=0.984 Sum_probs=8.9
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eoq_A 10 EKPFKCDICGK 20 (46)
T ss_dssp SCSCCCSSSCC
T ss_pred CCCcCCCcCCc
Confidence 46799999986
No 149
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=55.49 E-value=3.3 Score=29.32 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=32.9
Q ss_pred CCCceEEEeecCCceEEEEccc-ccceeE-eccCCCCchhhhhhhhhhhc
Q psy3498 31 HEKSCEVKMDKGRNSARIACRV-CLEDFQ-TTINFLSEAIDVYNDWVDAS 78 (81)
Q Consensus 31 ~~~sV~v~i~k~~~~g~l~C~~-C~~~~~-~~i~~L~epIDVYs~WiD~c 78 (81)
..+.+....++ .|.....|.. ||..++ |++.-...+-+-|.+|+++.
T Consensus 178 r~n~~~~~~~~-~G~y~g~Cse~CG~~Hs~M~~~v~vv~~~~f~~W~~~~ 226 (227)
T 1v54_B 178 RLNQTTLMSSR-PGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASM 226 (227)
T ss_dssp CCEEEEECCSS-CEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHHT
T ss_pred ceEEEEEecCC-cEEEEEEehhhcccccccCeEEEEEEcHHHHHHHHHhh
Confidence 33445555544 5788899986 999876 46555556678899999764
No 150
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=55.46 E-value=7.4 Score=25.82 Aligned_cols=31 Identities=16% Similarity=0.428 Sum_probs=19.9
Q ss_pred ecCCC--CCCCCceEEEeecCCceEEEEcccccceeEec
Q psy3498 24 FNCPF--CNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60 (81)
Q Consensus 24 F~CPf--C~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~ 60 (81)
=.||. ||.. .+--.. .-...|+.||..|.+.
T Consensus 119 ~~c~~~~cg~g-~fma~h-----~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 119 RECSNPTCGAG-VFLANH-----KDRLYCGKCHSVYKVN 151 (152)
T ss_dssp CBCCSTTSCSS-SBEEEC-----SSCEEESSSSSCCEEC
T ss_pred CcCCCccCCCc-eEeccc-----CCCcccCCCceEEEec
Confidence 46999 9972 221111 1267999999988753
No 151
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.41 E-value=4.3 Score=19.87 Aligned_cols=11 Identities=18% Similarity=0.936 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eml_A 10 EKPYECSVCGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCCCcCC
Confidence 45688988885
No 152
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.33 E-value=3.5 Score=20.20 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=8.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (45)
T 2epu_A 10 QKPFECTHCGK 20 (45)
T ss_dssp CCSEEETTTTE
T ss_pred CcCccCCCCCC
Confidence 45688888875
No 153
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.28 E-value=4.3 Score=19.93 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em2_A 10 EKPFKCKECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCEECCcCCc
Confidence 45688999885
No 154
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.21 E-value=4.3 Score=19.80 Aligned_cols=11 Identities=18% Similarity=0.619 Sum_probs=8.9
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eop_A 10 EKPHECRECGK 20 (46)
T ss_dssp CCSCBCTTTCC
T ss_pred CCCeeCCCCCc
Confidence 46799999986
No 155
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=55.06 E-value=3.2 Score=29.46 Aligned_cols=48 Identities=8% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCCCceEEEeecCCceEEEEccc-ccceeE-eccCCCCc-hhhhhhhhhhhc
Q psy3498 30 NHEKSCEVKMDKGRNSARIACRV-CLEDFQ-TTINFLSE-AIDVYNDWVDAS 78 (81)
Q Consensus 30 ~~~~sV~v~i~k~~~~g~l~C~~-C~~~~~-~~i~~L~e-pIDVYs~WiD~c 78 (81)
|..+.+...+++ .|+....|.. ||..|. |.+.-... +-+-|..|+...
T Consensus 78 Gr~n~l~~~~~~-pG~y~g~CsE~CG~~Hs~M~~~v~vv~~~~~F~~Wl~~~ 128 (205)
T 1cyx_A 78 GMQTRLHLIANE-PGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKA 128 (205)
T ss_dssp TCCEEEEECCSS-SEEEEEEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHH
T ss_pred CceEEEEEEeCC-CeEEEEEcccccccchhhceEEEEEECCHHHHHHHHHHh
Confidence 344555665554 6788999986 999886 45555555 668899999764
No 156
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=55.05 E-value=8.9 Score=24.85 Aligned_cols=32 Identities=19% Similarity=0.497 Sum_probs=21.0
Q ss_pred eecCCCCCCCCceEEEeecCCce--EEEEcccccceeEe
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNS--ARIACRVCLEDFQT 59 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~--g~l~C~~C~~~~~~ 59 (81)
.+.|| ||.. -.+.....- -.+.|..|.+.|.-
T Consensus 112 ~~~Cr-CG~~----f~i~~~~l~~~~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 112 YLSCR-CGGK----YSVSKDEAEEVSLISCDTCSLIIEL 145 (155)
T ss_dssp EEECS-SSCE----EEEETTHHHHCCEEECSSSSCEEEE
T ss_pred EEcCC-CCCe----EEecHHHhCCCCEEECCCCceEEEE
Confidence 36798 9962 344444321 47899999988763
No 157
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.02 E-value=4.4 Score=19.83 Aligned_cols=11 Identities=18% Similarity=0.963 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep2_A 10 EKPYECSICGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCcCCCCCCc
Confidence 46799999985
No 158
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.85 E-value=4.4 Score=19.84 Aligned_cols=11 Identities=18% Similarity=0.706 Sum_probs=9.0
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytn_A 10 KKPYKCNECGK 20 (46)
T ss_dssp CSSCBCTTTCC
T ss_pred CcCeECCCCCC
Confidence 46799999986
No 159
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.83 E-value=4.7 Score=19.86 Aligned_cols=11 Identities=18% Similarity=0.915 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eon_A 10 EKPYKCQVCGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CcccCCCCCCc
Confidence 46799999986
No 160
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=54.79 E-value=4.4 Score=20.22 Aligned_cols=9 Identities=0% Similarity=-0.020 Sum_probs=5.6
Q ss_pred ceecCCCCC
Q psy3498 22 IQFNCPFCN 30 (81)
Q Consensus 22 ~~F~CPfC~ 30 (81)
+.|.|+.|+
T Consensus 39 k~~~C~~C~ 47 (48)
T 2epr_A 39 KPYSSGPSS 47 (48)
T ss_dssp CCCCSCCCC
T ss_pred CCccCCCCC
Confidence 456666665
No 161
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.71 E-value=4.7 Score=19.72 Aligned_cols=11 Identities=18% Similarity=0.767 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq0_A 10 EKPYKCHECGK 20 (46)
T ss_dssp CCCEECTTTCC
T ss_pred CCCeECCCCCc
Confidence 46799999986
No 162
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=54.60 E-value=4.3 Score=19.89 Aligned_cols=11 Identities=18% Similarity=0.730 Sum_probs=8.9
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em0_A 10 EKTWKCRECDM 20 (46)
T ss_dssp CCCCCCSSSCC
T ss_pred CcCeECCCCCc
Confidence 46799999986
No 163
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=54.56 E-value=14 Score=22.32 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=10.1
Q ss_pred CCceecCCC--CCCC
Q psy3498 20 LDIQFNCPF--CNHE 32 (81)
Q Consensus 20 l~~~F~CPf--C~~~ 32 (81)
=++.|.|++ |+..
T Consensus 24 GEKPYkC~~~~CgKa 38 (73)
T 1x3c_A 24 PYRPYRCVHQGCFAA 38 (73)
T ss_dssp SSCSCBCCSTTCCCB
T ss_pred CCCCeECCCCCcChh
Confidence 368999976 9973
No 164
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.54 E-value=4.1 Score=19.88 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq4_A 10 EKLYNCKECGK 20 (46)
T ss_dssp CCCCCBTTTTB
T ss_pred CCCeECCCCCC
Confidence 46799999986
No 165
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.46 E-value=4.1 Score=19.90 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep1_A 10 EKPYECSDCGK 20 (46)
T ss_dssp CCSSCCSSSCC
T ss_pred CCCcCCCCCCc
Confidence 45699999986
No 166
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.40 E-value=5 Score=19.69 Aligned_cols=11 Identities=18% Similarity=0.899 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2enh_A 10 EKPYECDVCRK 20 (46)
T ss_dssp SSSCBCTTTCC
T ss_pred CCCcCCCCcCc
Confidence 46799999986
No 167
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.33 E-value=4.7 Score=19.73 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2ytg_A 10 EKPFKCGECGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CCCeECCCCCc
Confidence 45689999885
No 168
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.26 E-value=4.8 Score=19.68 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emy_A 10 ENPYECHECGK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CcCcCCCCCCc
Confidence 46788998885
No 169
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.14 E-value=4.6 Score=19.74 Aligned_cols=11 Identities=18% Similarity=0.785 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em7_A 10 EKPYKCEECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCccCCCccc
Confidence 45688988885
No 170
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.11 E-value=4.1 Score=19.95 Aligned_cols=12 Identities=17% Similarity=0.634 Sum_probs=9.2
Q ss_pred CceecCCCCCCC
Q psy3498 21 DIQFNCPFCNHE 32 (81)
Q Consensus 21 ~~~F~CPfC~~~ 32 (81)
++.|.|+.|+..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq2_A 10 GKPYQCNECGKA 21 (46)
T ss_dssp SCSSSCCSSCCC
T ss_pred CCCeECCCCCcc
Confidence 467999999863
No 171
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=54.08 E-value=9.2 Score=26.00 Aligned_cols=26 Identities=15% Similarity=0.489 Sum_probs=17.4
Q ss_pred ceecCCCCCCCCceEEEe-ecCCceEEEEcccccce
Q psy3498 22 IQFNCPFCNHEKSCEVKM-DKGRNSARIACRVCLED 56 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i-~k~~~~g~l~C~~C~~~ 56 (81)
..+.|+.||+ |. .- +... .|.+||..
T Consensus 154 ~~~~C~~CG~---~~-~g~~~p~-----~CP~C~~~ 180 (191)
T 1lko_A 154 TKWRCRNCGY---VH-EGTGAPE-----LCPACAHP 180 (191)
T ss_dssp EEEEETTTCC---EE-EEEECCS-----BCTTTCCB
T ss_pred ceEEECCCCC---Ee-eCCCCCC-----CCCCCcCC
Confidence 3799999999 22 21 1111 89999974
No 172
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.98 E-value=4.8 Score=19.75 Aligned_cols=11 Identities=18% Similarity=0.751 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoo_A 10 ERPYGCNECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCEEccccCc
Confidence 46788888885
No 173
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=53.95 E-value=4.6 Score=19.82 Aligned_cols=11 Identities=18% Similarity=0.785 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emk_A 10 EKPYECKECGK 20 (46)
T ss_dssp SCSCBCSSSCC
T ss_pred CCceECCCCCc
Confidence 45699999986
No 174
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=53.92 E-value=4.5 Score=19.87 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ely_A 10 EKPFKCVECGK 20 (46)
T ss_dssp CCSBCCSSSCC
T ss_pred CCCcccCccCc
Confidence 46799999986
No 175
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.82 E-value=4.8 Score=19.61 Aligned_cols=11 Identities=18% Similarity=0.624 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en8_A 10 EKSHTCDECGK 20 (46)
T ss_dssp CSSEECTTTCC
T ss_pred CCCeECCCcCc
Confidence 45689999885
No 176
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=53.76 E-value=4.9 Score=19.63 Aligned_cols=11 Identities=18% Similarity=0.824 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ema_A 10 EKRYKCNECGK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CcCcCCCCCcc
Confidence 46789999885
No 177
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=53.74 E-value=4.6 Score=19.68 Aligned_cols=11 Identities=18% Similarity=0.649 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2el4_A 10 VKPYGCSQCAK 20 (46)
T ss_dssp CCSEECSSSSC
T ss_pred CCceECCCCCc
Confidence 45688998885
No 178
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.69 E-value=4.8 Score=19.74 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoh_A 10 KKPYECKECRK 20 (46)
T ss_dssp SCSCCCSSSCC
T ss_pred CCCcCCCCcCc
Confidence 46799999986
No 179
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.65 E-value=5 Score=19.69 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emf_A 10 GKHFECTECGK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 45688888885
No 180
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.58 E-value=4.4 Score=19.90 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emz_A 10 ERPFKCNECGK 20 (46)
T ss_dssp CCSCCCSSSCC
T ss_pred CCCeECCCCCc
Confidence 46799999986
No 181
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.54 E-value=4.9 Score=19.70 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2en9_A 10 KKLFKCNECKK 20 (46)
T ss_dssp SCCCBCTTTCC
T ss_pred CCCEECCccCc
Confidence 46799999986
No 182
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.23 E-value=3.5 Score=20.15 Aligned_cols=11 Identities=18% Similarity=0.815 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq3_A 10 EKPYECNQCGK 20 (46)
T ss_dssp CCSSEETTTTE
T ss_pred CCCeECCCCCh
Confidence 46789999885
No 183
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=52.97 E-value=4.5 Score=17.09 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=4.5
Q ss_pred cccccceeE
Q psy3498 50 CRVCLEDFQ 58 (81)
Q Consensus 50 C~~C~~~~~ 58 (81)
|..||..|.
T Consensus 4 C~~C~k~f~ 12 (27)
T 1znf_A 4 CGLCERSFV 12 (27)
T ss_dssp CSSSCCBCS
T ss_pred CCCCCCcCC
Confidence 555555543
No 184
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.97 E-value=4.8 Score=19.66 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.9
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2epz_A 10 EKPFDCIDCGK 20 (46)
T ss_dssp CCSBCCTTTCC
T ss_pred CCCeECCCCCc
Confidence 46799999986
No 185
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.89 E-value=5 Score=19.62 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yu8_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CSSEECSSSCC
T ss_pred CCCeECCcCCc
Confidence 46799999985
No 186
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.86 E-value=3.9 Score=20.03 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yti_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCTTCCSSSCC
T ss_pred CcCeECCCCCc
Confidence 46799999986
No 187
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=52.84 E-value=5.1 Score=21.05 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.1
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 38 ~~~~~C~~C~k 48 (66)
T 2drp_A 38 VKVYPCPFCFK 48 (66)
T ss_dssp CCCEECTTTCC
T ss_pred CcCeECCCCCC
Confidence 35688888875
No 188
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=52.78 E-value=4.7 Score=29.10 Aligned_cols=47 Identities=11% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCCCceEEEeecCCceEEEEccc-ccceeE-eccCCCCchhhhhhhhhhh
Q psy3498 30 NHEKSCEVKMDKGRNSARIACRV-CLEDFQ-TTINFLSEAIDVYNDWVDA 77 (81)
Q Consensus 30 ~~~~sV~v~i~k~~~~g~l~C~~-C~~~~~-~~i~~L~epIDVYs~WiD~ 77 (81)
|..+.+....++ .|.....|.. ||..++ |++.-...+-+-|.+|+++
T Consensus 208 G~~n~~~~~~~~-~G~y~g~Cse~CG~~H~~M~~~v~vv~~~~f~~W~~~ 256 (262)
T 2gsm_B 208 GRLAQLWFRAER-EGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQ 256 (262)
T ss_dssp TCCEEEEEECCS-CEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHH
T ss_pred CceeEEEEecCC-cEEEEEEChHhcccCcccCeEEEEEEcHHHHHHHHHH
Confidence 344555555554 5788999986 999875 4666666678899999976
No 189
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.72 E-value=5.1 Score=19.64 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2em5_A 10 TKSHQCHECGR 20 (46)
T ss_dssp SCSEECSSSCC
T ss_pred CCCeECCcCCC
Confidence 45688999885
No 190
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.65 E-value=5.2 Score=19.48 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=8.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eor_A 10 EKPYNCEECGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CcCccCCCCCC
Confidence 45688888875
No 191
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=52.55 E-value=5.3 Score=20.50 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 22 ~k~~~C~~C~k 32 (54)
T 1yui_A 22 EQPATCPICYA 32 (54)
T ss_dssp SCCEECTTTCC
T ss_pred CCCccCCCCCc
Confidence 46799999985
No 192
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=52.52 E-value=5.8 Score=29.58 Aligned_cols=48 Identities=6% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCCCceEEEeecCCceEEEEccc-ccceeE-eccCCCCc-hhhhhhhhhhhc
Q psy3498 30 NHEKSCEVKMDKGRNSARIACRV-CLEDFQ-TTINFLSE-AIDVYNDWVDAS 78 (81)
Q Consensus 30 ~~~~sV~v~i~k~~~~g~l~C~~-C~~~~~-~~i~~L~e-pIDVYs~WiD~c 78 (81)
|..+.+....++ .|.....|.. ||..|. |++.-... +-+-|.+|+++.
T Consensus 188 Gr~n~~~~~~~~-~G~y~g~CsE~CG~~Hs~M~~~v~vv~~~~~F~~Wl~~~ 238 (315)
T 1fft_B 188 GMQTRLHLIANE-PGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKA 238 (315)
T ss_dssp TSCEEEEEECCS-CBCCEEBCCSCCSTTTTTCCEECCBCSSTHHHHHHHHHH
T ss_pred CcceeeEEecCC-CeEEEEeccccchhhHHhccceEEEecCHHHHHHHHHHH
Confidence 344556666654 5778889986 999875 45554445 567899999764
No 193
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.48 E-value=5.1 Score=19.65 Aligned_cols=11 Identities=18% Similarity=0.833 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em6_A 10 EKCYKCDVCGK 20 (46)
T ss_dssp CCCCBCSSSCC
T ss_pred CCCeECCCCCc
Confidence 46799999986
No 194
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=52.40 E-value=4.5 Score=20.54 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=21.0
Q ss_pred ceecCCCCCCCCceEEEeec----CCceEEEEcccccceeEe
Q psy3498 22 IQFNCPFCNHEKSCEVKMDK----GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k----~~~~g~l~C~~C~~~~~~ 59 (81)
+.|.|+.|+..-+-.-.+.. -.+.....|..|+..|..
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 57999999973211111110 012234789999998864
No 195
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.30 E-value=5.2 Score=19.62 Aligned_cols=11 Identities=18% Similarity=0.745 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em8_A 10 EKPYKCVECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECcccCc
Confidence 46799999985
No 196
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.27 E-value=5.2 Score=19.55 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2enc_A 10 EKPFKCEECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCcCCCCCCC
Confidence 45789999885
No 197
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.21 E-value=4.3 Score=19.66 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.0
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (44)
T 2eox_A 10 SKSYNCNECGK 20 (44)
T ss_dssp CCCEEETTTTE
T ss_pred CCCeECcccCc
Confidence 45688888874
No 198
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=51.98 E-value=4.4 Score=21.13 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=6.9
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
-|.||.|-.
T Consensus 5 GFiCP~C~~ 13 (34)
T 3mjh_B 5 GFICPQCMK 13 (34)
T ss_dssp EEECTTTCC
T ss_pred ccCCcHHHH
Confidence 489999953
No 199
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.98 E-value=5.3 Score=19.52 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emp_A 10 VKPYMCNECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 45688998885
No 200
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.94 E-value=5.1 Score=19.55 Aligned_cols=11 Identities=18% Similarity=0.658 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (47)
T 2epx_A 10 KKPYECIECGK 20 (47)
T ss_dssp CCSBCCSSSCC
T ss_pred CCCEECCccCc
Confidence 45789999986
No 201
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.93 E-value=5.3 Score=19.32 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=8.0
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (44)
T 2emx_A 8 EKPFGCSCCEK 18 (44)
T ss_dssp CCCEECSSSSC
T ss_pred CcCccCCCCCc
Confidence 45688888875
No 202
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=51.77 E-value=7.3 Score=29.17 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=20.7
Q ss_pred eecCCCCCCC-CceEEEeecCCceEEEEcccccce
Q psy3498 23 QFNCPFCNHE-KSCEVKMDKGRNSARIACRVCLED 56 (81)
Q Consensus 23 ~F~CPfC~~~-~sV~v~i~k~~~~g~l~C~~C~~~ 56 (81)
..-||||+-. .|..|..++ +.-.|-.||..
T Consensus 34 ~~~CPfh~ektpSf~V~~~k----~~~~CFgCg~g 64 (407)
T 2au3_A 34 RTNCPFHPDDTPSFYVSPSK----QIFKCFGCGVG 64 (407)
T ss_dssp EECCSSSCCSSCCEEEETTT----TEEEETTTCCE
T ss_pred EeeCcCCCCCCCeEEEECCC----CEEEECCCCCC
Confidence 3579999843 356555432 47899999975
No 203
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.40 E-value=5.5 Score=19.44 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2ytk_A 10 EKPYKCNECGK 20 (46)
T ss_dssp SCSEECSSSCC
T ss_pred CCCEeCCcCCC
Confidence 45688888885
No 204
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.27 E-value=5.5 Score=19.38 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=8.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emm_A 10 ERPHKCNECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCCCCCh
Confidence 45688888885
No 205
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.17 E-value=5.3 Score=19.56 Aligned_cols=11 Identities=18% Similarity=0.800 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytq_A 10 EKPYGCSECGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CCCcCCCccCh
Confidence 46799999986
No 206
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=51.13 E-value=5.4 Score=19.56 Aligned_cols=11 Identities=18% Similarity=0.676 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2el6_A 10 VNPYKCSQCEK 20 (46)
T ss_dssp CCSEECSSSSC
T ss_pred CCCeECCCCCc
Confidence 45799999986
No 207
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.09 E-value=5.4 Score=19.34 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (44)
T 2eou_A 10 KTTSECQECGK 20 (44)
T ss_dssp SCCCCCTTTCC
T ss_pred CcCeECCCCCc
Confidence 45789999986
No 208
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=50.97 E-value=4.8 Score=21.19 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=10.5
Q ss_pred chhhhhhhhhhh
Q psy3498 66 EAIDVYNDWVDA 77 (81)
Q Consensus 66 epIDVYs~WiD~ 77 (81)
++|+.|++||++
T Consensus 14 ~ai~~~N~~ve~ 25 (36)
T 3hpw_C 14 EGMAEVARFIEM 25 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999999975
No 209
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=50.79 E-value=5.6 Score=22.00 Aligned_cols=39 Identities=18% Similarity=0.401 Sum_probs=23.2
Q ss_pred CceecCCCCCCCCceEEEeec----CCceEEEEcccccceeEe
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDK----GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k----~~~~g~l~C~~C~~~~~~ 59 (81)
++.|.|+.||..=+-.-.+.. -.+.-.-.|..||..|..
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 578999999962111111111 023345789999999964
No 210
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.67 E-value=5.7 Score=19.39 Aligned_cols=11 Identities=18% Similarity=0.812 Sum_probs=8.5
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytd_A 10 EKPYKCSECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCC
Confidence 45688998885
No 211
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.35 E-value=5.6 Score=19.49 Aligned_cols=11 Identities=18% Similarity=0.766 Sum_probs=8.9
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2elz_A 10 EKPYKCEDCGK 20 (46)
T ss_dssp CSSCBCSSSCC
T ss_pred CCCeeCcccCc
Confidence 46799999986
No 212
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=50.33 E-value=10 Score=23.93 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=13.3
Q ss_pred eEEEEcccccceeEe
Q psy3498 45 SARIACRVCLEDFQT 59 (81)
Q Consensus 45 ~g~l~C~~C~~~~~~ 59 (81)
.+.|.|..||..|..
T Consensus 51 ~~~LvC~~c~~~YPI 65 (97)
T 2k5r_A 51 HEALITRDRKQVFRI 65 (97)
T ss_dssp SEEEECTTSCEEEEE
T ss_pred CCeEEcCCCCCCccc
Confidence 589999999999964
No 213
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.25 E-value=5.8 Score=19.49 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eom_A 10 ERGHRCSDCGK 20 (46)
T ss_dssp CSSCCCSSSCC
T ss_pred CCCcCCCCCCC
Confidence 45799999986
No 214
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=50.22 E-value=2.1 Score=24.27 Aligned_cols=37 Identities=11% Similarity=0.248 Sum_probs=20.3
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccC
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTIN 62 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~ 62 (81)
+.|.|..||++-+ -+.-+..-.+.|-.||.+--+++.
T Consensus 2 ~iY~C~rCg~~fs----~~el~~lP~IrCpyCGyrii~KvR 38 (48)
T 4ayb_P 2 AVYRCGKCWKTFT----DEQLKVLPGVRCPYCGYKIIFMVR 38 (48)
T ss_dssp ---CCCCTTTTCC----CCCSCCCSSSCCTTTCCSCEECCC
T ss_pred cEEEeeccCCCcc----HHHHhhCCCcccCccCcEEEEEec
Confidence 3678888888533 122223456788888876555443
No 215
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=50.17 E-value=6 Score=20.00 Aligned_cols=10 Identities=20% Similarity=0.893 Sum_probs=6.7
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
+.|.|+.|+.
T Consensus 6 kp~~C~~C~k 15 (48)
T 3iuf_A 6 KPYACDICGK 15 (48)
T ss_dssp SCEECTTTCC
T ss_pred cCEECCCcCc
Confidence 4577777764
No 216
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.83 E-value=4.8 Score=19.67 Aligned_cols=11 Identities=18% Similarity=0.803 Sum_probs=8.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ysp_A 10 EKPYKCEKCGK 20 (46)
T ss_dssp CCSEEETTTTE
T ss_pred CCCeECCCCCC
Confidence 45688888875
No 217
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=49.63 E-value=23 Score=25.57 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=23.9
Q ss_pred eecCCCCCCCCceEEEeec----------------CC---ceEEEEcccccceeEeccC
Q psy3498 23 QFNCPFCNHEKSCEVKMDK----------------GR---NSARIACRVCLEDFQTTIN 62 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k----------------~~---~~g~l~C~~C~~~~~~~i~ 62 (81)
...||.||+. +..-++. .. ......|..||..+.....
T Consensus 12 ~~~C~~Cg~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~~~ 68 (416)
T 4e2x_A 12 PTACRVCGGG--VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEV 68 (416)
T ss_dssp CEECTTTSCE--EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESSCC
T ss_pred CCcCCCCCCe--eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecCcC
Confidence 4689999996 3322222 01 1346679999998875443
No 218
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.12 E-value=6.2 Score=19.14 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
.+.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (43)
T 2yrm_A 8 NGAFFCNECDC 18 (43)
T ss_dssp SCCBCCSSSCC
T ss_pred CCCEECCCCCC
Confidence 35689999986
No 219
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.97 E-value=6.3 Score=19.22 Aligned_cols=11 Identities=18% Similarity=0.924 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2ep0_A 10 EKPYKCDVCHK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCcccCc
Confidence 46799999985
No 220
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.82 E-value=5.1 Score=19.51 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytr_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCTTCCTTTCC
T ss_pred CcCcCCCCCCC
Confidence 45699999986
No 221
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.52 E-value=5.5 Score=19.59 Aligned_cols=11 Identities=18% Similarity=0.727 Sum_probs=8.7
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytm_A 10 EKPYKCMECGK 20 (46)
T ss_dssp CCSSSBTTTTB
T ss_pred CCCcCCCCCCc
Confidence 45699999986
No 222
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=48.35 E-value=6.4 Score=19.92 Aligned_cols=10 Identities=30% Similarity=1.185 Sum_probs=7.1
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
+.|.|+.|+.
T Consensus 28 ~~~~C~~C~~ 37 (57)
T 1bbo_A 28 RPYHCTYCNF 37 (57)
T ss_dssp CCEECSSSSC
T ss_pred CCccCCCCCc
Confidence 4578887775
No 223
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.30 E-value=6.8 Score=19.07 Aligned_cols=11 Identities=18% Similarity=0.618 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2yso_A 10 EKSHQCRECGE 20 (46)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEEccccCh
Confidence 45688888885
No 224
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.60 E-value=5.7 Score=19.38 Aligned_cols=11 Identities=18% Similarity=0.760 Sum_probs=8.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en6_A 10 EKPYGCNECGK 20 (46)
T ss_dssp SCCEEETTTTE
T ss_pred CcCeECCCCCc
Confidence 45688888875
No 225
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=47.53 E-value=6.2 Score=29.22 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=35.7
Q ss_pred CCCCceEEEeecCCceEEEEccc-ccceeE-eccCCCCchhhhhhhhhhhc
Q psy3498 30 NHEKSCEVKMDKGRNSARIACRV-CLEDFQ-TTINFLSEAIDVYNDWVDAS 78 (81)
Q Consensus 30 ~~~~sV~v~i~k~~~~g~l~C~~-C~~~~~-~~i~~L~epIDVYs~WiD~c 78 (81)
|..+.+....++ .|.....|.. ||..|+ |++.-...+-+-|.+|+.+-
T Consensus 226 G~~n~~~~~~~~-~G~y~g~CsE~CG~~Hs~M~~~v~vvs~~~F~~Wl~~~ 275 (298)
T 3hb3_B 226 GRIAQLWFSVDQ-EGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWLAGA 275 (298)
T ss_dssp TCCEEEEEECSS-SEEEEECCCSCCSTTTTSCCEEEEEECHHHHHHHHHHH
T ss_pred CceEEEEEEeCC-CEEEEEEcccccCcCccCCeeEEEEEcHHHHHHHHHHh
Confidence 445566666655 6788999996 999885 46666667788999999753
No 226
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=47.36 E-value=8.9 Score=25.90 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=12.2
Q ss_pred CceEEEEccccccee
Q psy3498 43 RNSARIACRVCLEDF 57 (81)
Q Consensus 43 ~~~g~l~C~~C~~~~ 57 (81)
+..|.|.|++||+..
T Consensus 65 ~~~g~I~C~~Cgq~W 79 (145)
T 3eqt_A 65 KPGGVISCRNCGEVW 79 (145)
T ss_dssp EEEEEEEETTTCCEE
T ss_pred cCCcEEEchhhChhh
Confidence 356999999999953
No 227
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=46.94 E-value=12 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.657 Sum_probs=13.5
Q ss_pred CCCCCCCCceEEEeecCCceEEEEccccc
Q psy3498 26 CPFCNHEKSCEVKMDKGRNSARIACRVCL 54 (81)
Q Consensus 26 CPfC~~~~sV~v~i~k~~~~g~l~C~~C~ 54 (81)
||.||+.. .+.+......-.-.|..||
T Consensus 6 C~~CG~~~--~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 6 CSQCGGEV--ILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CTTTCCBC--EEECCTTCSSCEEEETTTT
T ss_pred CchhCCcc--ccccccCCCCcceECCCCC
Confidence 77777742 3333222222344577776
No 228
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=46.93 E-value=13 Score=23.92 Aligned_cols=28 Identities=32% Similarity=0.758 Sum_probs=19.2
Q ss_pred ecCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 24 FNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 24 F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
-.||-|+++- +... +...|..|+..|..
T Consensus 33 ~~CP~Cq~eL------~~~g--~~~hC~~C~~~f~~ 60 (101)
T 2jne_A 33 LHCPQCQHVL------DQDN--GHARCRSCGEFIEM 60 (101)
T ss_dssp CBCSSSCSBE------EEET--TEEEETTTCCEEEE
T ss_pred ccCccCCCcc------eecC--CEEECccccchhhc
Confidence 6899999851 1222 25579999988864
No 229
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.88 E-value=5.7 Score=19.37 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=8.2
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en1_A 10 EKPFKCEECGK 20 (46)
T ss_dssp CCSEEETTTTE
T ss_pred CCCeeCCCCCc
Confidence 45688888874
No 230
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.73 E-value=6.1 Score=19.33 Aligned_cols=11 Identities=18% Similarity=0.809 Sum_probs=8.8
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytt_A 10 EKPYQCSECGK 20 (46)
T ss_dssp CCTTCCSSSCC
T ss_pred CCCeeCCCCCc
Confidence 46699999986
No 231
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=46.18 E-value=7.5 Score=27.09 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=17.9
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEcccccceeEe
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~ 59 (81)
.||.|+.. ++--.. .. ..+|+.|++.|.+
T Consensus 115 ~Cp~Cg~g-~fma~h--~d---R~~CGkC~~t~~~ 143 (189)
T 2xzm_9 115 GCPKCGPG-IFMAKH--YD---RHYCGKCHLTLKI 143 (189)
T ss_dssp ECSTTCSS-CEEEEC--SS---CEEETTTCCCBCC
T ss_pred cCCccCCC-ccccCc--cC---CCccCCceeEEEe
Confidence 59999973 222211 11 4499999998853
No 232
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=45.55 E-value=8.5 Score=24.08 Aligned_cols=28 Identities=14% Similarity=0.432 Sum_probs=21.7
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEccccccee
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
.||-|++ +++.+.... ..+.|.+||..-
T Consensus 38 kCp~C~~---~~~VFShA~--t~V~C~~CgtvL 65 (86)
T 3iz6_X 38 KCQGCFN---ITTVFSHSQ--TVVVCPGCQTVL 65 (86)
T ss_dssp ECTTTCC---EEEEETTCS--SCCCCSSSCCCC
T ss_pred ECCCCCC---eeEEEecCC--cEEEccCCCCEe
Confidence 7999999 567776644 578999999754
No 233
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=45.37 E-value=8 Score=25.91 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=16.4
Q ss_pred ecCCCCCCCCceEEEeecCCceEEEEcccccc
Q psy3498 24 FNCPFCNHEKSCEVKMDKGRNSARIACRVCLE 55 (81)
Q Consensus 24 F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~ 55 (81)
|.||.|+..... ....+.|..|+.
T Consensus 3 ~~Cp~C~~~~~~--------~~~~~~C~~~~~ 26 (269)
T 1p91_A 3 FSCPLCHQPLSR--------EKNSYICPQRHQ 26 (269)
T ss_dssp BBCTTTCCBCEE--------ETTEEECTTCCE
T ss_pred ccCCCCCcccee--------CCCEEECCCCCc
Confidence 899999874322 113678998864
No 234
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.36 E-value=6.5 Score=24.08 Aligned_cols=7 Identities=43% Similarity=1.545 Sum_probs=5.8
Q ss_pred cCCCCCC
Q psy3498 25 NCPFCNH 31 (81)
Q Consensus 25 ~CPfC~~ 31 (81)
.||.||.
T Consensus 49 ~CPvCgs 55 (112)
T 1l8d_A 49 KCPVCGR 55 (112)
T ss_dssp ECTTTCC
T ss_pred CCCCCCC
Confidence 5999987
No 235
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.69 E-value=5.7 Score=19.30 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.4
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eoe_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCSSEETTTTE
T ss_pred CCCeECCCcCh
Confidence 45688988885
No 236
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=44.45 E-value=16 Score=22.37 Aligned_cols=8 Identities=50% Similarity=1.597 Sum_probs=4.8
Q ss_pred cCCCCCCC
Q psy3498 25 NCPFCNHE 32 (81)
Q Consensus 25 ~CPfC~~~ 32 (81)
.||-|+++
T Consensus 4 ~CP~C~~~ 11 (81)
T 2jrp_A 4 TCPVCHHA 11 (81)
T ss_dssp CCSSSCSC
T ss_pred CCCCCCCc
Confidence 46666663
No 237
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=44.23 E-value=8.3 Score=20.58 Aligned_cols=10 Identities=40% Similarity=1.437 Sum_probs=4.7
Q ss_pred EcccccceeE
Q psy3498 49 ACRVCLEDFQ 58 (81)
Q Consensus 49 ~C~~C~~~~~ 58 (81)
.|..||..|.
T Consensus 51 ~C~~C~~~f~ 60 (73)
T 1f2i_G 51 QCRICMRNFS 60 (73)
T ss_dssp ECTTTCCEES
T ss_pred ECCCCCchhC
Confidence 3455555443
No 238
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.95 E-value=8.1 Score=20.98 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=22.5
Q ss_pred CceecCCCCCCCCceEEEeec------CCceEEEEcccccceeEe
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDK------GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k------~~~~g~l~C~~C~~~~~~ 59 (81)
++.|.|+.|+..=.-.-.+.. ........|..|+..|..
T Consensus 13 ~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~ 57 (77)
T 2ct1_A 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIAR 57 (77)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESS
T ss_pred CCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCC
Confidence 567999999962111000100 111134789999999864
No 239
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.77 E-value=8.3 Score=20.72 Aligned_cols=40 Identities=15% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCceecCCCCCCCCceEEEeec----CCceEEEEcccccceeEe
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDK----GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k----~~~~g~l~C~~C~~~~~~ 59 (81)
-++.|.|+.|+..-.-.-.+.. -.+.-...|..|+..|..
T Consensus 11 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 3578999999962111000100 112335789999999864
No 240
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.29 E-value=8.1 Score=19.79 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=7.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 39 ~k~~~C~~C~k 49 (54)
T 2eps_A 39 ERPHKCQVWVS 49 (54)
T ss_dssp CCCCCSSSSCC
T ss_pred CCCccCCCCCC
Confidence 35677887775
No 241
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=43.02 E-value=4 Score=28.79 Aligned_cols=36 Identities=17% Similarity=0.548 Sum_probs=21.1
Q ss_pred ceecCCCCCCCCceEEEeecCC----ceEEEEcccccceeE
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGR----NSARIACRVCLEDFQ 58 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~----~~g~l~C~~C~~~~~ 58 (81)
=.|.||.|+++.... -+.... ...-+.|..|+..+.
T Consensus 21 l~l~Cp~C~~~~~F~-gv~~~~~~~~~~sg~~C~~C~~~~~ 60 (206)
T 3flo_B 21 LELSCPSCDKRFPFG-GIVSSNYYRVSYNGLQCKHCEQLFT 60 (206)
T ss_dssp EEEECTTTCCEEEEC-SSSCCSSEEEETTEEEETTTCCBCC
T ss_pred eEEECCCCCCccCCC-CcccCCCcccccccccCCCCCCcCC
Confidence 479999999853211 011100 112578999998764
No 242
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=41.70 E-value=11 Score=18.85 Aligned_cols=10 Identities=40% Similarity=1.002 Sum_probs=6.3
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
..|.||.|..
T Consensus 2 ~k~~CpvCk~ 11 (28)
T 2jvx_A 2 SDFCCPKCQY 11 (28)
T ss_dssp CCEECTTSSC
T ss_pred CcccCccccc
Confidence 3567777764
No 243
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=40.72 E-value=23 Score=21.72 Aligned_cols=32 Identities=34% Similarity=0.630 Sum_probs=22.5
Q ss_pred eecCCCCCCCCceEEEeec-------CCceEEEEcccccceeE
Q psy3498 23 QFNCPFCNHEKSCEVKMDK-------GRNSARIACRVCLEDFQ 58 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k-------~~~~g~l~C~~C~~~~~ 58 (81)
.|+|-.||. +++-.+ -.+-..++|--|+..|.
T Consensus 10 ~F~C~~Cgd----~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~ 48 (79)
T 1wjv_A 10 FFTCNACGE----SVKKIQVEKHVSNCRNCECLSCIDCGKDFW 48 (79)
T ss_dssp EEEESSSCC----EEETTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred EEEcCCCCC----eeecccchhHHhhCCCCCcEEecccCCeeC
Confidence 699999996 222211 12345899999999996
No 244
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.52 E-value=10 Score=20.58 Aligned_cols=39 Identities=15% Similarity=0.466 Sum_probs=22.5
Q ss_pred CceecCCCCCCCCceEEEeec--C--C---ceEEEEcccccceeEe
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDK--G--R---NSARIACRVCLEDFQT 59 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k--~--~---~~g~l~C~~C~~~~~~ 59 (81)
++.|.|+.|+..-.-.-.+.+ . . ......|..|+..|..
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~ 50 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEK 50 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESS
T ss_pred CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCC
Confidence 468999999962110000100 0 1 1235789999999864
No 245
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.83 E-value=10 Score=21.49 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=9.5
Q ss_pred ceecCCCCCCC
Q psy3498 22 IQFNCPFCNHE 32 (81)
Q Consensus 22 ~~F~CPfC~~~ 32 (81)
+.|.||.||..
T Consensus 11 ~~~~CPrCn~~ 21 (49)
T 2e72_A 11 GRKICPRCNAQ 21 (49)
T ss_dssp SCCCCTTTCCC
T ss_pred CceeCCccccc
Confidence 78999999974
No 246
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=39.40 E-value=3.2 Score=25.16 Aligned_cols=35 Identities=17% Similarity=0.526 Sum_probs=18.4
Q ss_pred ecCCCCCCCCceEEEeecCCceEEEEcccccceeE
Q psy3498 24 FNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQ 58 (81)
Q Consensus 24 F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~ 58 (81)
..||.|...-...-..........+.|.+|...|+
T Consensus 49 ~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYS 83 (133)
T ss_dssp SBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHH
T ss_pred CCCCCCCCcCccccccccccCCCCCCCCCCCCccc
Confidence 47888887432111111112234567888877664
No 247
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=38.75 E-value=19 Score=21.30 Aligned_cols=25 Identities=8% Similarity=0.327 Sum_probs=18.2
Q ss_pred ceEEEeecCCceEEEEcccccceeEec
Q psy3498 34 SCEVKMDKGRNSARIACRVCLEDFQTT 60 (81)
Q Consensus 34 sV~v~i~k~~~~g~l~C~~C~~~~~~~ 60 (81)
-|-+.||. ..+.+.|.-||+.|..+
T Consensus 29 rVyl~ld~--~~g~~~CpYCg~~f~l~ 53 (67)
T 2jrr_A 29 RVWLQIPE--DTGWVECPYCDCKYVLK 53 (67)
T ss_dssp EEEEECCT--TTSEEEETTTTEEEEET
T ss_pred EEEEEccC--CCCeEECCCCCCEEEEC
Confidence 35556643 34788999999999865
No 248
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=38.33 E-value=7.1 Score=22.52 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=18.3
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcccccc
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLE 55 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~ 55 (81)
..+..-.||.||.. ...+-.|..||.
T Consensus 26 ~~p~l~~c~~cG~~-----------~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECPQCHGK-----------KLSHHICPNCGY 51 (60)
T ss_dssp CCCCCEECTTTCCE-----------ECTTBCCTTTCB
T ss_pred cCCCceECCCCCCE-----------eCCceEcCCCCc
Confidence 46788899999972 224456888884
No 249
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=38.12 E-value=12 Score=20.88 Aligned_cols=38 Identities=21% Similarity=0.486 Sum_probs=22.0
Q ss_pred ceecCCCCCCCCceEEEeec----CCceEEEEcccccceeEe
Q psy3498 22 IQFNCPFCNHEKSCEVKMDK----GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k----~~~~g~l~C~~C~~~~~~ 59 (81)
+.|.|+.|+..-+-.-.+.. -.+.....|..|+..|..
T Consensus 2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43 (88)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCC
Confidence 57999999962111000100 012234789999999864
No 250
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.98 E-value=11 Score=20.01 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=22.7
Q ss_pred CceecCCCCCCCCceEEEeec----CCceEEEEcccccceeEe
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDK----GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k----~~~~g~l~C~~C~~~~~~ 59 (81)
++.|.|+.|+..-+-.-.+.. -.+.....|..|+..|..
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 467999999962111000100 112234789999999864
No 251
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=37.95 E-value=9.5 Score=27.16 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=20.9
Q ss_pred CceecCCCCCCCCceEEEeecCCceEEEEcccccce
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLED 56 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~ 56 (81)
-..|.|+.||+. +.+..+...-.--..|..|+..
T Consensus 132 ~~~f~C~~C~~~--~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 132 KAVFECRGCMRH--HAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEEETTTCCE--EEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEEcCCCCCE--EEEEecCCcccCCCcCCCCCCC
Confidence 357999999985 3444432211112479999975
No 252
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.86 E-value=12 Score=18.74 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=8.3
Q ss_pred CceecCCC--CCC
Q psy3498 21 DIQFNCPF--CNH 31 (81)
Q Consensus 21 ~~~F~CPf--C~~ 31 (81)
++.|.|++ |+.
T Consensus 7 ekp~~C~~~~C~k 19 (38)
T 2eln_A 7 GILLKCPTDGCDY 19 (38)
T ss_dssp CCCEECSSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 46789986 886
No 253
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=37.45 E-value=12 Score=16.36 Aligned_cols=10 Identities=20% Similarity=0.776 Sum_probs=5.7
Q ss_pred ceecCC--CCCC
Q psy3498 22 IQFNCP--FCNH 31 (81)
Q Consensus 22 ~~F~CP--fC~~ 31 (81)
+.|.|+ .|+.
T Consensus 2 k~~~C~~~~C~k 13 (32)
T 1zfd_A 2 RPYSCDHPGCDK 13 (32)
T ss_dssp CSBCCCCTTCCC
T ss_pred CCCcCcCCCCCC
Confidence 346666 5654
No 254
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=37.32 E-value=16 Score=24.83 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=26.2
Q ss_pred CceecCCCCCCCCceEEEeecC------------CceEEEEccccc
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDKG------------RNSARIACRVCL 54 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k~------------~~~g~l~C~~C~ 54 (81)
.=++.|.+|+.+.|+++.-... ..+...-|+-+.
T Consensus 68 Nfv~KCk~C~re~Si~i~~~~~~~~y~~~d~~k~~~i~~FDCRGlE 113 (164)
T 1zso_A 68 NFMIKWTEYPKYSTINFVNTKNSCSYEEVNNNEWRDFASFECRGIE 113 (164)
T ss_dssp SEEECCSSSSCCEEEEEECCTTTTEEEGGGTTSCEEEEEEEEESEE
T ss_pred eEEEeccccCCcceEEEEeCCCCcccccccCCCceEEEEEECCCee
Confidence 5589999999999998865442 146788899875
No 255
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=36.85 E-value=14 Score=20.54 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=12.4
Q ss_pred CCCCceecCCCCCCCC
Q psy3498 18 EPLDIQFNCPFCNHEK 33 (81)
Q Consensus 18 ~~l~~~F~CPfC~~~~ 33 (81)
..++..|.||.|...-
T Consensus 3 ~~~~~~~~C~IC~~~~ 18 (78)
T 1t1h_A 3 PEFPEYFRCPISLELM 18 (78)
T ss_dssp CCCSSSSSCTTTSCCC
T ss_pred cCCcccCCCCCccccc
Confidence 3578899999998743
No 256
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=36.83 E-value=24 Score=27.25 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=20.7
Q ss_pred ecCCCCCCCCceEEEe-e-----cCCceEEEEcccccceeE
Q psy3498 24 FNCPFCNHEKSCEVKM-D-----KGRNSARIACRVCLEDFQ 58 (81)
Q Consensus 24 F~CPfC~~~~sV~v~i-~-----k~~~~g~l~C~~C~~~~~ 58 (81)
-.||.|+. +.++--+ . ++-.+-...|..||.++.
T Consensus 13 s~Cp~C~~-~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ 52 (404)
T 2qkd_A 13 SLCMNCYR-NGTTRLLLTKIPFFREIIVSSFSCEHCGWNNT 52 (404)
T ss_dssp EECTTTSS-EEEEEEEEEEETTTEEEEEEEEECTTTCCEEE
T ss_pred ccCCCCCC-CceEEEEEEcCCCCceEEEEEEECCCCCCchh
Confidence 45999995 3333222 1 122456788999998763
No 257
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=36.60 E-value=12 Score=19.96 Aligned_cols=9 Identities=22% Similarity=0.903 Sum_probs=4.7
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 57 ~~~C~~C~~ 65 (82)
T 2kmk_A 57 PHKCQVCGK 65 (82)
T ss_dssp CEECTTTSC
T ss_pred CCcCCCcch
Confidence 455555553
No 258
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=36.29 E-value=13 Score=19.98 Aligned_cols=8 Identities=25% Similarity=1.194 Sum_probs=3.8
Q ss_pred eecCCCCC
Q psy3498 23 QFNCPFCN 30 (81)
Q Consensus 23 ~F~CPfC~ 30 (81)
.|.|+.|+
T Consensus 45 ~~~C~~C~ 52 (74)
T 2lce_A 45 PYRCNICG 52 (74)
T ss_dssp SEECTTTC
T ss_pred CEECCCCC
Confidence 34455444
No 259
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=35.94 E-value=23 Score=25.33 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=19.4
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEcccccc
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCLE 55 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~ 55 (81)
.||.||.. |....-.+.++-.|..|+.
T Consensus 237 pC~~CG~~----I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 237 PCPACGRP----VERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp BCTTTCCB----CEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCE----eeEEEECCCceEECCCCCC
Confidence 59999983 2222336788999999985
No 260
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=35.90 E-value=29 Score=21.29 Aligned_cols=36 Identities=11% Similarity=0.370 Sum_probs=26.0
Q ss_pred CceecC-----CCCCCCCceEEEeecCCceEEEEcccccceeEec
Q psy3498 21 DIQFNC-----PFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60 (81)
Q Consensus 21 ~~~F~C-----PfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~ 60 (81)
..++.| |+ +| --|-+.||.+ .+.+.|.-||+.|...
T Consensus 26 ~~~V~CdGg~g~L-GH-PrVyL~ld~~--~g~~~CpYCg~~f~l~ 66 (80)
T 2jvm_A 26 TWKVACDGGEGAL-GH-PRVWLSIPHE--TGFVECGYCDRRYIHE 66 (80)
T ss_dssp CSEEEECCCSTTC-CC-CCEEEECCTT--TCEEECSSSSCEEEEH
T ss_pred CcEEEcCCCCCCC-CC-CEEEEEccCC--CCeEECCCCCCEEEec
Confidence 567888 34 67 4567777533 4788999999999753
No 261
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=35.78 E-value=3.5 Score=25.88 Aligned_cols=9 Identities=56% Similarity=1.471 Sum_probs=7.3
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
-|+||+|.+
T Consensus 30 dy~Cp~C~~ 38 (184)
T 4dvc_A 30 SFYCPHCNT 38 (184)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHhHHH
Confidence 488999965
No 262
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.73 E-value=13 Score=20.09 Aligned_cols=8 Identities=25% Similarity=0.974 Sum_probs=4.5
Q ss_pred ceecCCCC
Q psy3498 22 IQFNCPFC 29 (81)
Q Consensus 22 ~~F~CPfC 29 (81)
+.|.|+.|
T Consensus 17 ~~~~C~~C 24 (77)
T 2cot_A 17 RRYKCDEC 24 (77)
T ss_dssp CSSBCSSS
T ss_pred CCEECCCC
Confidence 45566655
No 263
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.72 E-value=14 Score=22.44 Aligned_cols=13 Identities=15% Similarity=0.616 Sum_probs=8.3
Q ss_pred EEEccc--ccceeEe
Q psy3498 47 RIACRV--CLEDFQT 59 (81)
Q Consensus 47 ~l~C~~--C~~~~~~ 59 (81)
...|.. |+..|..
T Consensus 67 ~~~C~~~~C~~~f~~ 81 (155)
T 2gli_A 67 PHKCTFEGCRKSYSR 81 (155)
T ss_dssp CCCCCSTTCCCCCSS
T ss_pred CccCCCCCCCCcccC
Confidence 456764 8777753
No 264
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=35.66 E-value=13 Score=16.17 Aligned_cols=9 Identities=33% Similarity=1.250 Sum_probs=4.7
Q ss_pred eecCC--CCCC
Q psy3498 23 QFNCP--FCNH 31 (81)
Q Consensus 23 ~F~CP--fC~~ 31 (81)
.|.|+ .|+.
T Consensus 2 p~~C~~~~C~k 12 (31)
T 1sp2_A 2 PFMCTWSYCGK 12 (31)
T ss_dssp CCBCCSTTCCC
T ss_pred CcCCcCCCCCc
Confidence 35565 5553
No 265
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.56 E-value=11 Score=25.92 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=6.9
Q ss_pred ecCCCCCCCCc
Q psy3498 24 FNCPFCNHEKS 34 (81)
Q Consensus 24 F~CPfC~~~~s 34 (81)
..||.|||.++
T Consensus 187 ~~CP~C~~~k~ 197 (202)
T 1yuz_A 187 EKCPICFRPKD 197 (202)
T ss_dssp SBCTTTCCBGG
T ss_pred CCCCCCCCChH
Confidence 56777776543
No 266
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.52 E-value=13 Score=21.94 Aligned_cols=9 Identities=33% Similarity=0.848 Sum_probs=5.0
Q ss_pred ceecCCCCC
Q psy3498 22 IQFNCPFCN 30 (81)
Q Consensus 22 ~~F~CPfC~ 30 (81)
+.|.|+.||
T Consensus 27 ~~h~C~~Cg 35 (85)
T 2lv2_A 27 ECHLCPVCG 35 (85)
T ss_dssp TTEECTTSC
T ss_pred CCEECCCCC
Confidence 445666664
No 267
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=35.07 E-value=22 Score=25.44 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=19.3
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEcccccc
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCLE 55 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~ 55 (81)
.||.||.. -..++ -.+.++-.|..|+.
T Consensus 244 pC~~CG~~-I~~~~---~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAE-IQKIK---VAGRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCB-CEEEE---ETTEEEEECTTTSC
T ss_pred CCCCCCCE-eeEEE---ECCCceEECCCCCC
Confidence 59999983 22222 25788999999974
No 268
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.91 E-value=22 Score=25.43 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=18.7
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEccccc
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCL 54 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~ 54 (81)
.||.||.. -..+++ .+.++-.|..|+
T Consensus 242 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ 267 (268)
T 1k82_A 242 PCRVCGTP-IVATKH---AQRATFYCRQCQ 267 (268)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTC
T ss_pred CCCCCCCE-eeEEEE---CCCceEECCCCC
Confidence 59999983 223333 578899999997
No 269
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.84 E-value=14 Score=20.02 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=8.6
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 45 ~~~~~C~~C~~ 55 (86)
T 1x6h_A 45 PAAFVCSKCGK 55 (86)
T ss_dssp CCCEECSSSCC
T ss_pred CcceECCCCCC
Confidence 36799999985
No 270
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=34.77 E-value=22 Score=25.28 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=18.6
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEccccc
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCL 54 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~ 54 (81)
.||.||.. -..++ -.+.++-.|..|+
T Consensus 236 pC~~CG~~-I~~~~---~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSI-IEKTT---LSSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCB-CEEEE---ETTEEEEECTTTC
T ss_pred CCCCCCCE-eEEEE---ECCCCeEECCCCC
Confidence 59999983 22222 2578899999997
No 271
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=34.64 E-value=22 Score=23.33 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=13.2
Q ss_pred eEEEEcccccceeEe
Q psy3498 45 SARIACRVCLEDFQT 59 (81)
Q Consensus 45 ~g~l~C~~C~~~~~~ 59 (81)
-|.+.|..||-.|..
T Consensus 97 EG~L~Cp~cgr~ypI 111 (125)
T 3q87_A 97 EGSLRCDMCGLIYPI 111 (125)
T ss_dssp EEEEEETTTCCEEEE
T ss_pred EEEEECCCCCCEeec
Confidence 499999999999975
No 272
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=34.00 E-value=13 Score=22.75 Aligned_cols=33 Identities=18% Similarity=0.538 Sum_probs=21.5
Q ss_pred eecCCCCCCCCceEEEeec-CCceEEEEcccccceeE
Q psy3498 23 QFNCPFCNHEKSCEVKMDK-GRNSARIACRVCLEDFQ 58 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k-~~~~g~l~C~~C~~~~~ 58 (81)
.+.|| || ....+..+- ..+--.+.|..|.+.-.
T Consensus 23 ~ypCr-CG--d~F~it~edL~~ge~iv~C~sCSL~I~ 56 (83)
T 1yop_A 23 TYPCP-CG--DRFQIYLDDMFEGEKVAVCPSCSLMID 56 (83)
T ss_dssp EEEET-TT--EEEEEEHHHHHTTCCEEECSSSCCEEE
T ss_pred EEeCC-CC--CeEEECHHHHhCCCEEEECCCCccEEE
Confidence 46798 99 455555433 23445789999998544
No 273
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=33.67 E-value=16 Score=16.87 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.3
Q ss_pred CceecCCC--CCC
Q psy3498 21 DIQFNCPF--CNH 31 (81)
Q Consensus 21 ~~~F~CPf--C~~ 31 (81)
++.|.|++ |+.
T Consensus 6 ~k~~~C~~~~C~k 18 (37)
T 1va1_A 6 KKQHICHIQGCGK 18 (37)
T ss_dssp CCCEECCSTTCCC
T ss_pred CCCCCCCCCCCCC
Confidence 35688875 775
No 274
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=33.39 E-value=25 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=18.3
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccceeEec
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~ 60 (81)
.+|.|+.|| .+.+-. +.....|..|+.-++..
T Consensus 97 ~~yHC~~Cg-----iCR~G~--~~~ffHC~~C~~C~s~~ 128 (143)
T 2dkt_A 97 RQYHCESCG-----ICRIGP--KEDFFHCLKCNLCLTTN 128 (143)
T ss_dssp SEEEETTTT-----EEEESC--GGGEEEETTTTEEEEGG
T ss_pred ceecCCCCC-----ceeccC--CcCcEECCcCCeeeccc
Confidence 345555555 344432 44566777777766654
No 275
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=33.12 E-value=24 Score=25.30 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=18.5
Q ss_pred cCCCCCCCCceEEEeecCCceEEEEccccc
Q psy3498 25 NCPFCNHEKSCEVKMDKGRNSARIACRVCL 54 (81)
Q Consensus 25 ~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~ 54 (81)
.||.||.. -..+++ .+.++-.|..|+
T Consensus 247 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTP-IEKTVV---AGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTC
T ss_pred CCCCCCCe-EEEEEE---CCCCeEECCCCC
Confidence 69999983 222222 578899999997
No 276
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=32.80 E-value=16 Score=23.32 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.7
Q ss_pred CCCceecCCCCCC
Q psy3498 19 PLDIQFNCPFCNH 31 (81)
Q Consensus 19 ~l~~~F~CPfC~~ 31 (81)
.-...|+||.|+.
T Consensus 66 ~~s~~~~C~nC~R 78 (99)
T 3mhs_C 66 ESSQYIHCENCGR 78 (99)
T ss_dssp TTSCEEECTTTCC
T ss_pred cCCCeEECCCCCC
Confidence 3457999999997
No 277
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=32.22 E-value=9.6 Score=30.97 Aligned_cols=29 Identities=24% Similarity=0.559 Sum_probs=0.0
Q ss_pred ecCCCCCCCCceEEEeec-CCceEEEEccc---ccceeE
Q psy3498 24 FNCPFCNHEKSCEVKMDK-GRNSARIACRV---CLEDFQ 58 (81)
Q Consensus 24 F~CPfC~~~~sV~v~i~k-~~~~g~l~C~~---C~~~~~ 58 (81)
=.||.||++ . -+ ..+-+.+.|.+ |-+...
T Consensus 416 ~~CP~Cgs~-l-----~~~~~~~~~~rC~n~~~CpaQ~~ 448 (615)
T 3sgi_A 416 TTCPECGSP-L-----APEKEGDADIRCPNARGCPGQLR 448 (615)
T ss_dssp ---------------------------------------
T ss_pred CCCCCCCCe-e-----eecCCCCEEEEcCCCCCCHHHHH
Confidence 369999984 1 12 24556789976 877653
No 278
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=31.96 E-value=21 Score=23.68 Aligned_cols=14 Identities=21% Similarity=0.714 Sum_probs=11.1
Q ss_pred CceEEEEccccccee
Q psy3498 43 RNSARIACRVCLEDF 57 (81)
Q Consensus 43 ~~~g~l~C~~C~~~~ 57 (81)
+..|.|.|+ ||+..
T Consensus 63 ~~~g~I~C~-Cgq~W 76 (133)
T 3ga3_A 63 QINGEIICK-CGQAW 76 (133)
T ss_dssp EEEEEEEET-TSCEE
T ss_pred cCCceEEEe-cCChh
Confidence 356899999 99853
No 279
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=31.83 E-value=15 Score=25.82 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=8.6
Q ss_pred CCceecCCCCCC
Q psy3498 20 LDIQFNCPFCNH 31 (81)
Q Consensus 20 l~~~F~CPfC~~ 31 (81)
+-+-|.||||+-
T Consensus 151 ~~~~f~Cp~C~~ 162 (192)
T 2avu_E 151 PVGSFACSLCQP 162 (192)
T ss_dssp CSSCCCCTTC--
T ss_pred CCCCCcCCCCCC
Confidence 457899999994
No 280
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.83 E-value=18 Score=19.08 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=23.6
Q ss_pred CceecCCCCCCCCceEEEeecC-----CceEEEEcc-cccceeEec
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDKG-----RNSARIACR-VCLEDFQTT 60 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k~-----~~~g~l~C~-~C~~~~~~~ 60 (81)
.+.|.|++|+.. .. .-... .+.-...|. .||..|...
T Consensus 8 ~~~~~C~~C~k~--f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~ 50 (66)
T 2eod_A 8 KRTQPCTYCTKE--FV-FDTIQSHQYQCPRLPVACPNQCGVGTVAR 50 (66)
T ss_dssp CCEEECSSSCCE--EE-HHHHHHHHHHCSSSEEECTTCCSCCEEET
T ss_pred CCCeeccccCCc--cC-HHHHHHHHHHcCCcCccCCcccCcccccH
Confidence 467999999962 22 11110 223357899 999998754
No 281
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=31.81 E-value=16 Score=20.40 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=6.8
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
+.|.|+.|+.
T Consensus 74 ~~~~C~~C~~ 83 (100)
T 2ebt_A 74 KPFQCGVCNR 83 (100)
T ss_dssp CSCBCSSSCC
T ss_pred CCeECCCCcC
Confidence 4577777764
No 282
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=31.15 E-value=18 Score=19.75 Aligned_cols=8 Identities=38% Similarity=1.256 Sum_probs=4.0
Q ss_pred eecCCCCC
Q psy3498 23 QFNCPFCN 30 (81)
Q Consensus 23 ~F~CPfC~ 30 (81)
.|.|+.|+
T Consensus 62 ~~~C~~C~ 69 (90)
T 1a1h_A 62 PFACDICG 69 (90)
T ss_dssp CEECTTTC
T ss_pred CccCCCCC
Confidence 35555554
No 283
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.06 E-value=16 Score=19.58 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=6.0
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
+.|.|+.|+.
T Consensus 67 ~~~~C~~C~k 76 (79)
T 2dlk_A 67 RDYICEFSGP 76 (79)
T ss_dssp CCCSCCSSSC
T ss_pred CCeeCCCCCC
Confidence 4566666664
No 284
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.57 E-value=18 Score=20.01 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=20.5
Q ss_pred CceecCCCCCCCCceEEEeec----CCceEEEEcccccceeEe
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDK----GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k----~~~~g~l~C~~C~~~~~~ 59 (81)
++.|.|+.|+..-.-.-.+.. -.+.....|..|+..|..
T Consensus 5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 47 (95)
T 2yt9_A 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR 47 (95)
T ss_dssp CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESC
T ss_pred CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCC
Confidence 467889988862110000000 112234678888888754
No 285
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.44 E-value=20 Score=16.36 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=5.9
Q ss_pred ceecCCC--CCC
Q psy3498 22 IQFNCPF--CNH 31 (81)
Q Consensus 22 ~~F~CPf--C~~ 31 (81)
+.|.|++ |+.
T Consensus 5 k~~~C~~~~C~k 16 (38)
T 1bhi_A 5 KPFLCTAPGCGQ 16 (38)
T ss_dssp CCEECCCTTTCC
T ss_pred cceECCCCCCCc
Confidence 4577773 664
No 286
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=30.34 E-value=26 Score=22.29 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=18.7
Q ss_pred CceecCCCCCCCCceEEEeecCCceEEEEcccccc
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLE 55 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~ 55 (81)
.+-..||.||. .+. -+++. .|+.||.
T Consensus 14 KtH~lCrRCG~-~sf--H~qK~------~CgkCGY 39 (97)
T 2zkr_2 14 KTHTLCRRCGS-KAY--HLQKS------TCGKCGY 39 (97)
T ss_dssp CCEECCTTTCS-SCE--ETTSC------CBTTTCT
T ss_pred CCCCcCCCCCC-ccC--cCccc------cCcccCC
Confidence 46788999998 454 33332 8999995
No 287
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.21 E-value=17 Score=20.58 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=9.8
Q ss_pred CceecCCCCCCC
Q psy3498 21 DIQFNCPFCNHE 32 (81)
Q Consensus 21 ~~~F~CPfC~~~ 32 (81)
++.|.|..|+..
T Consensus 11 ekpy~C~~CgK~ 22 (66)
T 2epp_A 11 AGILPCGLCGKV 22 (66)
T ss_dssp CCCCCCTTTCCC
T ss_pred ccCcCCCCCCCc
Confidence 578999999973
No 288
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.40 E-value=28 Score=22.20 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=16.3
Q ss_pred eEEEEcccccceeEeccCCCC
Q psy3498 45 SARIACRVCLEDFQTTINFLS 65 (81)
Q Consensus 45 ~g~l~C~~C~~~~~~~i~~L~ 65 (81)
-.++.|..||..++.....+.
T Consensus 88 H~HliC~~Cg~v~~~~~~~~~ 108 (145)
T 3eyy_A 88 HIHLVCRDCTNVIEADLSVAA 108 (145)
T ss_dssp SEEEEESSSSCEEEECGGGGH
T ss_pred ceEEEECCCCCEEEecCccHH
Confidence 478999999999887655443
No 289
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=28.80 E-value=17 Score=15.21 Aligned_cols=10 Identities=30% Similarity=0.856 Sum_probs=5.0
Q ss_pred Ecc--cccceeE
Q psy3498 49 ACR--VCLEDFQ 58 (81)
Q Consensus 49 ~C~--~C~~~~~ 58 (81)
.|. .||..|.
T Consensus 4 ~C~~~~C~k~f~ 15 (29)
T 2ab3_A 4 VCHFENCGRSFN 15 (29)
T ss_dssp EECSTTTCEEES
T ss_pred CCcCCcCcCccC
Confidence 355 5555553
No 290
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=27.95 E-value=22 Score=28.99 Aligned_cols=15 Identities=27% Similarity=0.824 Sum_probs=12.6
Q ss_pred ceecCCCCCCCCceE
Q psy3498 22 IQFNCPFCNHEKSCE 36 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~ 36 (81)
+.|.|+||++.|.+-
T Consensus 76 ~~W~C~~C~~~N~~P 90 (768)
T 1m2o_A 76 SSWSCPICNSRNHLP 90 (768)
T ss_dssp TEECCTTTCCCCBCC
T ss_pred CEEEcccCCCCCCCC
Confidence 589999999988654
No 291
>2lkl_A Erythrocyte membrane protein 1 (pfemp1); helical protein, cell adhesion; NMR {Plasmodium falciparum}
Probab=27.20 E-value=23 Score=21.73 Aligned_cols=17 Identities=18% Similarity=0.585 Sum_probs=13.6
Q ss_pred cCCCCchhhhhhhhhhh
Q psy3498 61 INFLSEAIDVYNDWVDA 77 (81)
Q Consensus 61 i~~L~epIDVYs~WiD~ 77 (81)
-.++..-+|.|++|+|.
T Consensus 40 ~DPI~NQLnLfHkWLDR 56 (81)
T 2lkl_A 40 SDPIMNQLDLLHKWLDR 56 (81)
T ss_dssp SCSSCTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHH
Confidence 34677778999999985
No 292
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=27.03 E-value=24 Score=24.06 Aligned_cols=28 Identities=14% Similarity=0.346 Sum_probs=18.0
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEcccccce
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLED 56 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~ 56 (81)
-.-.||.||.. |. . ..-|.-.|..|+..
T Consensus 41 ~Y~ACp~CnKK--V~-~----~~~g~~~CekC~~~ 68 (172)
T 3u50_C 41 YYYRCTCQGKS--VL-K----YHGDSFFCESCQQF 68 (172)
T ss_dssp EEEECTTSCCC--EE-E----ETTTEEEETTTTEE
T ss_pred EehhchhhCCE--ee-e----CCCCeEECCCCCCC
Confidence 35678888873 22 1 13367788888875
No 293
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.99 E-value=21 Score=20.59 Aligned_cols=11 Identities=27% Similarity=0.975 Sum_probs=9.2
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
++.|.|+.|+.
T Consensus 78 ~~~~~C~~C~k 88 (115)
T 2dmi_A 78 QKVLKCMYCGH 88 (115)
T ss_dssp CSSCBCSSSCC
T ss_pred CcceECCCCCC
Confidence 57899999986
No 294
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.82 E-value=62 Score=19.90 Aligned_cols=26 Identities=23% Similarity=0.630 Sum_probs=16.8
Q ss_pred eecCCCCCCCCceEEEeecCCce-EEEEcccccceeEe
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNS-ARIACRVCLEDFQT 59 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~-g~l~C~~C~~~~~~ 59 (81)
.-.|..|+. +.+. .-..|+ ||..|-.
T Consensus 25 ~~rC~~C~k----------kvgl~~~f~Cr-Cg~~FC~ 51 (85)
T 1wff_A 25 MKHCFLCGK----------KTGLATSFECR-CGNNFCA 51 (85)
T ss_dssp CCBCSSSCC----------BCSSSSCEECT-TCCEECT
T ss_pred CccchhhCC----------eecccCCeEcC-CCCEecc
Confidence 357888886 2233 146897 9988854
No 295
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.80 E-value=21 Score=20.45 Aligned_cols=39 Identities=23% Similarity=0.523 Sum_probs=22.8
Q ss_pred CceecCCCCCCCCc-eEEEeecC----Cc-eEEEEcccccceeEe
Q psy3498 21 DIQFNCPFCNHEKS-CEVKMDKG----RN-SARIACRVCLEDFQT 59 (81)
Q Consensus 21 ~~~F~CPfC~~~~s-V~v~i~k~----~~-~g~l~C~~C~~~~~~ 59 (81)
.+.|.|+.|+..-. -.-.+..- .+ .....|..|+..|..
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSC
T ss_pred CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCC
Confidence 57899999997422 11111110 11 224689999998853
No 296
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=26.77 E-value=19 Score=22.20 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=10.0
Q ss_pred EEEEcccccceeEe
Q psy3498 46 ARIACRVCLEDFQT 59 (81)
Q Consensus 46 g~l~C~~C~~~~~~ 59 (81)
+.-.|+ ||.+|..
T Consensus 97 a~~~Cg-CG~SF~~ 109 (112)
T 1x0g_A 97 ASQTCG-CGMAFRV 109 (112)
T ss_dssp CSEECS-SSSEEEC
T ss_pred CCcCCC-CCCcccc
Confidence 355788 9999985
No 297
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=26.69 E-value=1.2e+02 Score=19.03 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=27.9
Q ss_pred ceecCCCCCC----CCceEEEeecCC-ceEEEEcccccceeEeccC
Q psy3498 22 IQFNCPFCNH----EKSCEVKMDKGR-NSARIACRVCLEDFQTTIN 62 (81)
Q Consensus 22 ~~F~CPfC~~----~~sV~v~i~k~~-~~g~l~C~~C~~~~~~~i~ 62 (81)
+.+-|..|+. ..+..|.+.... ..-.+.|..||....+++.
T Consensus 64 KR~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p~~ 109 (120)
T 1x0t_A 64 KRRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPYL 109 (120)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEECC
T ss_pred HHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEccC
Confidence 5668999986 223566665532 2578899999987666554
No 298
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.28 E-value=23 Score=20.21 Aligned_cols=10 Identities=20% Similarity=0.903 Sum_probs=5.9
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
+.|.|+.|+.
T Consensus 64 ~~~~C~~C~~ 73 (110)
T 2csh_A 64 KPYECNICAK 73 (110)
T ss_dssp CCEECSSSCC
T ss_pred CCeeCCCCcc
Confidence 4566666664
No 299
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=26.04 E-value=23 Score=20.01 Aligned_cols=40 Identities=18% Similarity=0.485 Sum_probs=22.6
Q ss_pred CCceecCCCCCCCCceEEEeec----CCceEEEEcccccceeEe
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDK----GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k----~~~~g~l~C~~C~~~~~~ 59 (81)
-++.|.|+.|+..-.-.-.+.. -.+.....|..|+..|..
T Consensus 14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57 (106)
T ss_dssp CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC
Confidence 3567999999963211101100 012234689999988854
No 300
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.60 E-value=24 Score=20.27 Aligned_cols=9 Identities=33% Similarity=1.069 Sum_probs=4.0
Q ss_pred Eccccccee
Q psy3498 49 ACRVCLEDF 57 (81)
Q Consensus 49 ~C~~C~~~~ 57 (81)
.|..|+..|
T Consensus 96 ~C~~C~~~f 104 (124)
T 2dlq_A 96 KCSSCSQQF 104 (124)
T ss_dssp ECSSSCCEE
T ss_pred cCCCccchh
Confidence 344444444
No 301
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=25.30 E-value=26 Score=24.02 Aligned_cols=19 Identities=21% Similarity=0.531 Sum_probs=12.3
Q ss_pred cCCceEEEEcccccceeEe
Q psy3498 41 KGRNSARIACRVCLEDFQT 59 (81)
Q Consensus 41 k~~~~g~l~C~~C~~~~~~ 59 (81)
.+....++.|..||+.+-.
T Consensus 157 ~~~~~~~~~C~~CGE~~~~ 175 (191)
T 3d00_A 157 KKHKGKIVLCPQCREAYPA 175 (191)
T ss_dssp CCCCCCEEECTTTCCEEEG
T ss_pred CcCCcCCEECCcCCCChhh
Confidence 3334567778888877653
No 302
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=25.22 E-value=25 Score=22.72 Aligned_cols=14 Identities=36% Similarity=0.997 Sum_probs=10.6
Q ss_pred CCCceecCCCCCCC
Q psy3498 19 PLDIQFNCPFCNHE 32 (81)
Q Consensus 19 ~l~~~F~CPfC~~~ 32 (81)
++-..+.||.||+.
T Consensus 67 PvLR~Y~CpiCGAT 80 (106)
T 3alr_A 67 PYLRQYKCPLCGAT 80 (106)
T ss_dssp TTGGGCCCTTTCCC
T ss_pred CCcccccCCCCCCc
Confidence 33467999999984
No 303
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=25.12 E-value=35 Score=22.10 Aligned_cols=8 Identities=38% Similarity=1.053 Sum_probs=4.6
Q ss_pred cCCCCCCC
Q psy3498 25 NCPFCNHE 32 (81)
Q Consensus 25 ~CPfC~~~ 32 (81)
.||.||++
T Consensus 150 ~Cp~CG~~ 157 (165)
T 2lcq_A 150 VCPDCGSK 157 (165)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCc
Confidence 46666653
No 304
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=24.60 E-value=37 Score=22.68 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.8
Q ss_pred ceEEEEcccccceeEe
Q psy3498 44 NSARIACRVCLEDFQT 59 (81)
Q Consensus 44 ~~g~l~C~~C~~~~~~ 59 (81)
.-|.+.|..||..|..
T Consensus 106 ~eg~L~C~~cg~~YPI 121 (141)
T 2j6a_A 106 AEGEMKCRNCGHIYYI 121 (141)
T ss_dssp EEEEEECTTTCCEEEE
T ss_pred cCCEEECCCCCCcccc
Confidence 4589999999999975
No 305
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.08 E-value=25 Score=16.85 Aligned_cols=8 Identities=0% Similarity=-0.504 Sum_probs=4.5
Q ss_pred ceecCCCC
Q psy3498 22 IQFNCPFC 29 (81)
Q Consensus 22 ~~F~CPfC 29 (81)
+.|.|+.|
T Consensus 41 k~~~C~~C 48 (48)
T 2ent_A 41 KPSGPSSG 48 (48)
T ss_dssp CSCSSCCC
T ss_pred CCCCCCCC
Confidence 44666655
No 306
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=23.57 E-value=18 Score=22.85 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=14.3
Q ss_pred eeEeccCCCCchhhhh
Q psy3498 56 DFQTTINFLSEAIDVY 71 (81)
Q Consensus 56 ~~~~~i~~L~epIDVY 71 (81)
.|+..+.+=..|||||
T Consensus 86 ~yqi~LkS~~GPIdV~ 101 (106)
T 2aze_B 86 NFQISLKSKQGPIDVF 101 (106)
T ss_dssp CEEEEEECSSSCCEEE
T ss_pred ceEEEEECCCCCEEEE
Confidence 6888888888999998
No 307
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=23.28 E-value=20 Score=29.27 Aligned_cols=14 Identities=21% Similarity=0.693 Sum_probs=11.4
Q ss_pred ceecCCCCCCCCce
Q psy3498 22 IQFNCPFCNHEKSC 35 (81)
Q Consensus 22 ~~F~CPfC~~~~sV 35 (81)
+.|.|+||++.|.|
T Consensus 85 ~~W~C~~C~~~N~~ 98 (769)
T 2nut_A 85 KLWACNFCYQRNQF 98 (769)
T ss_dssp TEEECSSSCCEEEC
T ss_pred CEEEccCCCCCCCC
Confidence 58999999997654
No 308
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=23.09 E-value=31 Score=18.21 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=6.4
Q ss_pred ceecCCCCCC
Q psy3498 22 IQFNCPFCNH 31 (81)
Q Consensus 22 ~~F~CPfC~~ 31 (81)
..|.||.||.
T Consensus 8 ~~~~C~~C~~ 17 (39)
T 2i5o_A 8 DQVPCEKCGS 17 (39)
T ss_dssp CEEECTTTCC
T ss_pred CCcccccccC
Confidence 4566777764
No 309
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=22.92 E-value=31 Score=23.83 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=16.3
Q ss_pred eecCCCCCCCCceEEEeecCCceEEEEcccccc
Q psy3498 23 QFNCPFCNHEKSCEVKMDKGRNSARIACRVCLE 55 (81)
Q Consensus 23 ~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~ 55 (81)
...|+.|+.... ......+-|..|+.
T Consensus 10 ~~~Cw~C~~~~~-------~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 10 YPRCWNCGGPWG-------PGREDRFFCPQCRA 35 (207)
T ss_dssp -CBCSSSCCBCC-------SSCSCCCBCTTTCC
T ss_pred CCCCCCCCCCcc-------cccccccccccccc
Confidence 457999997421 12234577999986
No 310
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.91 E-value=34 Score=16.74 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=7.8
Q ss_pred CceecCC--CCCC
Q psy3498 21 DIQFNCP--FCNH 31 (81)
Q Consensus 21 ~~~F~CP--fC~~ 31 (81)
++.|.|+ .|+.
T Consensus 16 ~k~~~C~~~~C~k 28 (47)
T 1ncs_A 16 DKTFECLFPGCTK 28 (47)
T ss_dssp TTEEECCCTTCCC
T ss_pred CCCeECCCCCCCC
Confidence 4678885 5875
No 311
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=22.47 E-value=8.6 Score=25.47 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=7.3
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
-|+||+|.+
T Consensus 23 D~~Cp~C~~ 31 (182)
T 3gn3_A 23 EPTCPFSVK 31 (182)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHhHHH
Confidence 478999985
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.45 E-value=49 Score=20.88 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=16.0
Q ss_pred eEEEEcccccceeEeccCCCC
Q psy3498 45 SARIACRVCLEDFQTTINFLS 65 (81)
Q Consensus 45 ~g~l~C~~C~~~~~~~i~~L~ 65 (81)
-.++.|..||..++.....+.
T Consensus 91 H~HliC~~Cg~v~~~~~~~~~ 111 (145)
T 2fe3_A 91 HYHAICENCGKIVDFHYPGLD 111 (145)
T ss_dssp EEEEEETTTCCEEECCCCCCH
T ss_pred cceEEECCCCCEEEecCCCHH
Confidence 368999999998887655443
No 313
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=22.25 E-value=32 Score=20.00 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.3
Q ss_pred CCCCceecCCCCCCC
Q psy3498 18 EPLDIQFNCPFCNHE 32 (81)
Q Consensus 18 ~~l~~~F~CPfC~~~ 32 (81)
..+|..|.||.|+.-
T Consensus 9 ~~~p~~~~CpI~~~~ 23 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTL 23 (85)
T ss_dssp TTCCTTTBCTTTCSB
T ss_pred hcCchheECcccCch
Confidence 457899999999863
No 314
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=22.16 E-value=62 Score=19.53 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=13.8
Q ss_pred CCCceecCCCCCCCCceEEEe
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKM 39 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i 39 (81)
.+++.| ||.||+....-|.+
T Consensus 27 ~~~k~F-Cp~CGn~TL~Rvsv 46 (79)
T 2con_A 27 DMNRVF-CGHCGNKTLKKVSV 46 (79)
T ss_dssp CSSCCS-CSSSCCSCCEEEEC
T ss_pred Cccccc-ccccCcccceEEEE
Confidence 456677 99999976544444
No 315
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.76 E-value=31 Score=18.71 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=13.6
Q ss_pred CCCCCceecCCCCCCCC
Q psy3498 17 IEPLDIQFNCPFCNHEK 33 (81)
Q Consensus 17 ~~~l~~~F~CPfC~~~~ 33 (81)
...++..+.||.|...-
T Consensus 14 ~~~~~~~~~C~IC~~~~ 30 (73)
T 2ysl_A 14 VNKLQEEVICPICLDIL 30 (73)
T ss_dssp CCCCCCCCBCTTTCSBC
T ss_pred HHhCccCCEeccCCccc
Confidence 46788899999998643
No 316
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=21.70 E-value=22 Score=22.17 Aligned_cols=39 Identities=18% Similarity=0.537 Sum_probs=19.4
Q ss_pred CceecCCCCCCCCceEEEeec--C--CceEEEEcccccceeEe
Q psy3498 21 DIQFNCPFCNHEKSCEVKMDK--G--RNSARIACRVCLEDFQT 59 (81)
Q Consensus 21 ~~~F~CPfC~~~~sV~v~i~k--~--~~~g~l~C~~C~~~~~~ 59 (81)
++.|.|+.||..=+-.-.+.. . .+.-.-.|..||..|..
T Consensus 20 ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 62 (133)
T 2lt7_A 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPL 62 (133)
T ss_dssp EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESS
T ss_pred CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeeccc
Confidence 367888888862110000000 0 11223568888877754
No 317
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.53 E-value=31 Score=24.12 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=9.3
Q ss_pred CceecCCCCCC
Q psy3498 21 DIQFNCPFCNH 31 (81)
Q Consensus 21 ~~~F~CPfC~~ 31 (81)
+.+..||+||.
T Consensus 220 ~~Iv~Cp~CgR 230 (256)
T 3na7_A 220 GDMITCPYCGR 230 (256)
T ss_dssp SSCEECTTTCC
T ss_pred CCEEECCCCCe
Confidence 46789999997
No 318
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=21.51 E-value=30 Score=23.09 Aligned_cols=28 Identities=25% Similarity=0.653 Sum_probs=18.5
Q ss_pred eecCCC--CCCCCceEEEeecCCceEEEEccccccee
Q psy3498 23 QFNCPF--CNHEKSCEVKMDKGRNSARIACRVCLEDF 57 (81)
Q Consensus 23 ~F~CPf--C~~~~sV~v~i~k~~~~g~l~C~~C~~~~ 57 (81)
.-.||. ||.. .+ ....|.-.|..|+..+
T Consensus 43 Y~aC~~~~CnKK-v~------~~~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 43 YQACPTQDCNKK-VI------DQQNGLYRCEKCDTEF 72 (181)
T ss_dssp EEBCCSTTCCCB-CE------EETTTEEEETTTTEEE
T ss_pred ECCCCchhcCCc-cc------cCCCCeEECCCCCCcC
Confidence 568999 9872 22 1233567899998765
No 319
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.31 E-value=1e+02 Score=16.75 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=26.9
Q ss_pred ecCCCCCCCCceEEEeecCCceEEEEcccccceeEeccCCCCc-hhhhhhhhh
Q psy3498 24 FNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSE-AIDVYNDWV 75 (81)
Q Consensus 24 F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~i~~L~e-pIDVYs~Wi 75 (81)
-.||.|+... +....-|.|..|..=|...--.|++ +++...+|+
T Consensus 7 ~~C~~C~~~~--------~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~ 51 (64)
T 1we9_A 7 GQCGACGESY--------AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYK 51 (64)
T ss_dssp CCCSSSCCCC--------CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCC
T ss_pred CCCCCCCCcc--------CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEE
Confidence 3589998632 1223467899999888876545543 344344553
No 320
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.11 E-value=33 Score=19.92 Aligned_cols=12 Identities=17% Similarity=0.802 Sum_probs=9.9
Q ss_pred CCceecCCCCCC
Q psy3498 20 LDIQFNCPFCNH 31 (81)
Q Consensus 20 l~~~F~CPfC~~ 31 (81)
-++.|.|+.|+.
T Consensus 22 ~~kpy~C~~C~k 33 (88)
T 1x6f_A 22 QNSTYQCKHCDS 33 (88)
T ss_dssp CCSCEECSSSCC
T ss_pred CCCCCcCCCCCC
Confidence 357899999986
No 321
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=20.95 E-value=25 Score=29.01 Aligned_cols=14 Identities=21% Similarity=0.757 Sum_probs=11.5
Q ss_pred ceecCCCCCCCCce
Q psy3498 22 IQFNCPFCNHEKSC 35 (81)
Q Consensus 22 ~~F~CPfC~~~~sV 35 (81)
+.|.|+||++.|.+
T Consensus 133 ~~W~C~~C~~~N~~ 146 (810)
T 1pcx_A 133 RRWRCNFCRLANDV 146 (810)
T ss_dssp TEEECTTTCCEEEC
T ss_pred CEEEccCCCCcCCC
Confidence 57999999997654
No 322
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=20.93 E-value=34 Score=20.60 Aligned_cols=14 Identities=14% Similarity=0.047 Sum_probs=12.1
Q ss_pred CCCCceecCCCCCC
Q psy3498 18 EPLDIQFNCPFCNH 31 (81)
Q Consensus 18 ~~l~~~F~CPfC~~ 31 (81)
..+|..|.||.|..
T Consensus 17 ~~~p~~~~CpI~~~ 30 (98)
T 1wgm_A 17 ADACDEFLDPIMST 30 (98)
T ss_dssp CSCCTTTBCTTTCS
T ss_pred hcCcHhcCCcCccc
Confidence 56789999999986
No 323
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.92 E-value=35 Score=19.04 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=23.7
Q ss_pred CCCceecCCCCCCCCceEEEeecC-----CceEEEEcccccceeE
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKG-----RNSARIACRVCLEDFQ 58 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~-----~~~g~l~C~~C~~~~~ 58 (81)
-..+.+.|++|+. ++. ..+.. -+...+.|..|+..|.
T Consensus 13 c~~r~~~C~~C~~--~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~ 54 (75)
T 2d9k_A 13 CPLRLAVCQHCDL--ELS-ILKLKEHEDYCGARTELCGNCGRNVL 54 (75)
T ss_dssp CCCCCEECSSSCC--EEC-HHHHHHHHHHHHHCEEECSSSCCEEE
T ss_pred CCCcccCCcccCh--Hhh-HHHHHHHHhHcCCCceEcccCCCcCc
Confidence 3457899999986 231 11111 1346789999999764
No 324
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=20.89 E-value=47 Score=21.50 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=11.8
Q ss_pred ceEEEEcc--ccccee
Q psy3498 44 NSARIACR--VCLEDF 57 (81)
Q Consensus 44 ~~g~l~C~--~C~~~~ 57 (81)
..|.+.|+ +||+..
T Consensus 56 ~~g~I~C~~~~Cg~~W 71 (121)
T 3lrr_A 56 KRAKIFCARQNCSHDW 71 (121)
T ss_dssp EEEEEEECSTTTCCEE
T ss_pred CCcEEEeCccccChhh
Confidence 56899999 999953
No 325
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.69 E-value=39 Score=19.14 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=23.7
Q ss_pred CCCceecCCCCCCCCceEEEeecCCceEEEEcccccceeEec
Q psy3498 19 PLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60 (81)
Q Consensus 19 ~l~~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~~~~ 60 (81)
.-+....|+.|+... .+...|.|..|..-|.+.
T Consensus 14 ~~~~~~~C~~C~~~~---------~~~~mi~CD~C~~wfH~~ 46 (75)
T 2k16_A 14 WGNQIWICPGCNKPD---------DGSPMIGCDDCDDWYHWP 46 (75)
T ss_dssp SSCEEECBTTTTBCC---------SSCCEEECSSSSSEEEHH
T ss_pred cCCCCcCCCCCCCCC---------CCCCEEEcCCCCcccccc
Confidence 334667799999742 234578899999998764
No 326
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.65 E-value=34 Score=19.45 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=21.2
Q ss_pred CCceecCCCCCCCCceEEEeec--CCceEEEEcccccceeEe
Q psy3498 20 LDIQFNCPFCNHEKSCEVKMDK--GRNSARIACRVCLEDFQT 59 (81)
Q Consensus 20 l~~~F~CPfC~~~~sV~v~i~k--~~~~g~l~C~~C~~~~~~ 59 (81)
-++.|.|+.|+..-.-.-.+.. ..-.....|..|+..|..
T Consensus 13 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~ 54 (107)
T 1wjp_A 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFS 54 (107)
T ss_dssp CCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSS
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCC
Confidence 3567999999863111000000 000123578899988854
No 327
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.61 E-value=35 Score=19.82 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=21.3
Q ss_pred ceecCCCCCCCC-ceEEEeec--C-CceEEEEcccccceeEe
Q psy3498 22 IQFNCPFCNHEK-SCEVKMDK--G-RNSARIACRVCLEDFQT 59 (81)
Q Consensus 22 ~~F~CPfC~~~~-sV~v~i~k--~-~~~g~l~C~~C~~~~~~ 59 (81)
+.|.|+.|+..= +-.-.+.. . -+.-...|..||..|..
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRS 74 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSS
T ss_pred CCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCC
Confidence 469999999732 11000100 0 01223579999998864
No 328
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=20.58 E-value=1.7e+02 Score=18.49 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=27.7
Q ss_pred ceecCCCCCC----CCceEEEeecCC-ceEEEEcccccceeEeccC
Q psy3498 22 IQFNCPFCNH----EKSCEVKMDKGR-NSARIACRVCLEDFQTTIN 62 (81)
Q Consensus 22 ~~F~CPfC~~----~~sV~v~i~k~~-~~g~l~C~~C~~~~~~~i~ 62 (81)
+..-|..|+. ..+..|.+.... ..-.+.|..||....+++.
T Consensus 59 KR~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p~~ 104 (123)
T 2k3r_A 59 KRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPYI 104 (123)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEECC
T ss_pred HHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEecC
Confidence 4567999986 234566665532 2578899999976665553
No 329
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=20.33 E-value=36 Score=20.53 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.6
Q ss_pred CCCCceecCCCCCCC
Q psy3498 18 EPLDIQFNCPFCNHE 32 (81)
Q Consensus 18 ~~l~~~F~CPfC~~~ 32 (81)
..+|..|.||.|..-
T Consensus 24 ~~~p~~~~CpI~~~~ 38 (100)
T 2kre_A 24 SDAPDEFRDPLMDTL 38 (100)
T ss_dssp SSCSTTTBCTTTCSB
T ss_pred ccCcHhhCCcCccCc
Confidence 568899999999863
No 330
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=20.18 E-value=35 Score=20.04 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=4.7
Q ss_pred eecCCCCCC
Q psy3498 23 QFNCPFCNH 31 (81)
Q Consensus 23 ~F~CPfC~~ 31 (81)
.|.|+.|+.
T Consensus 100 ~~~C~~C~k 108 (129)
T 2wbt_A 100 TKVCPVCKK 108 (129)
T ss_dssp CCBCTTTCC
T ss_pred CCCCCCCCc
Confidence 355555553
No 331
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=20.09 E-value=43 Score=20.04 Aligned_cols=41 Identities=24% Similarity=0.482 Sum_probs=24.7
Q ss_pred ceecCCCCCCCCceEEEeecCCceEEEEccccccee-------EeccCCCCchhhh
Q psy3498 22 IQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDF-------QTTINFLSEAIDV 70 (81)
Q Consensus 22 ~~F~CPfC~~~~sV~v~i~k~~~~g~l~C~~C~~~~-------~~~i~~L~epIDV 70 (81)
....|..|+..=++ . .-.-+|+.||..| ...++++..|+=|
T Consensus 19 ~~~~C~~C~~~F~~----~----~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RV 66 (90)
T 3t7l_A 19 EAPNCMNCQVKFTF----T----KRRHHCRACGKVFCGVCCNRKCKLQYLEKEARV 66 (90)
T ss_dssp GCCBCTTTCCBCCS----S----SCCEECTTTCCEECGGGSCEEEEETTTTEEEEE
T ss_pred cCCcCcCCCCcccc----h----hhCccccCCCCEECCcccCCeeecCCCCCCCeE
Confidence 56789999985432 1 1234677777655 3456666666544
No 332
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=20.03 E-value=26 Score=28.67 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=11.2
Q ss_pred ceecCCCCCCCCce
Q psy3498 22 IQFNCPFCNHEKSC 35 (81)
Q Consensus 22 ~~F~CPfC~~~~sV 35 (81)
+.|.||||++.|.|
T Consensus 115 ~~w~Cn~C~~~N~~ 128 (766)
T 3eh2_A 115 RRFQCCFCSCINDV 128 (766)
T ss_dssp TEEECTTTCCEEEC
T ss_pred CEEEeccccccCCC
Confidence 57999999986654
Done!