RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3498
(81 letters)
>gnl|CDD|218451 pfam05129, Elf1, Transcription elongation factor Elf1 like. This
family of short proteins contains a putative zinc
binding domain with four conserved cysteines. ELF1 has
been identified as a transcription elongation factor in
Saccharomyces cerevisiae.
Length = 74
Score = 106 bits (266), Expect = 3e-32
Identities = 40/71 (56%), Positives = 50/71 (70%)
Query: 7 KRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSE 66
K++ PPK+K L F+CPFCNH+KS VK+DK A++ CRVC FQT IN LSE
Sbjct: 1 KKRKPPKKKKKYKLPTVFDCPFCNHKKSVSVKIDKKTGIAKLHCRVCGLSFQTEINALSE 60
Query: 67 AIDVYNDWVDA 77
IDVY+DW+DA
Sbjct: 61 PIDVYSDWIDA 71
>gnl|CDD|227225 COG4888, COG4888, Uncharacterized Zn ribbon-containing protein
[General function prediction only].
Length = 104
Score = 77.9 bits (192), Expect = 1e-20
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MGRR+ KR+ KR+ + L F CP C HEK + K N C C F+
Sbjct: 1 MGRRRRKRRKIIKRR-PQVLPKTFTCPRCGHEKVSSCTVKKTVNIGTAVCGNCGLSFECE 59
Query: 61 INFLSEAIDVYNDWVDA 77
+ LSE +DVY+ WVDA
Sbjct: 60 VPELSEPVDVYSAWVDA 76
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor
Elf1; Provisional.
Length = 99
Score = 41.2 bits (97), Expect = 2e-06
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 1 MGRRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTT 60
MGRR+ KRK + K P F CP C + S VK+ K N A I C C +
Sbjct: 1 MGRRRKKRKKIIRPKPKLP--KIFECPRCG-KVSISVKIKK--NIAIITCGNCGLYTEFE 55
Query: 61 INFLSEAIDVYNDWVDA 77
+ + + +DVYN ++D
Sbjct: 56 VPSVYDEVDVYNKFIDL 72
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 27.9 bits (63), Expect = 0.40
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 42 GRNSARIACRVCL--EDFQTTINFLSEAIDVYN 72
G+N RIA L ED + + L EA++ YN
Sbjct: 364 GKNEIRIAY--VLNEEDLKRAMEILKEALEKYN 394
>gnl|CDD|223960 COG1029, FwdB, Formylmethanofuran dehydrogenase subunit B [Energy
production and conversion].
Length = 429
Score = 26.6 bits (59), Expect = 1.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 26 CPFCNHEKSC---EVKMDKGRNSARIACRVCLEDFQTTIN 62
CPFC C EV+++ G+ R ACR+ F+ +
Sbjct: 8 CPFCG--TLCDDIEVEVEDGKIEVRNACRIGNAKFKEAFS 45
>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding
protein. Members of this family are found in a range
of archaea and eukaryotes and have hypothesised ATP
binding activity.
Length = 235
Score = 26.6 bits (59), Expect = 1.5
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 31 HEKSCEVKMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWV 75
G N A V ++ + T+++L E ++ +D+
Sbjct: 52 TVADVMEDDGLGPNGALT---VAMDFLRITLDWLLEELEYEDDYY 93
>gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase;
Provisional.
Length = 426
Score = 25.6 bits (56), Expect = 2.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 15 KNIEPLDIQFNCPFCNHEKSCEVKM 39
EP ++FNC F + E C + M
Sbjct: 282 PEGEPKVVEFNCRFGDPETQCVLAM 306
>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional.
Length = 702
Score = 25.5 bits (57), Expect = 3.5
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 67 AIDVYNDWV 75
A+D Y DWV
Sbjct: 431 AVDRYGDWV 439
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 25.4 bits (55), Expect = 4.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 62 NFLSEAIDVYNDWVDASV 79
N LSEA+D+ D V+A+V
Sbjct: 86 NLLSEALDLTRDQVEAAV 103
>gnl|CDD|219735 pfam08170, POPLD, POPLD (NUC188) domain. This domain is found in
POP1-like nucleolar proteins.
Length = 92
Score = 24.6 bits (54), Expect = 4.5
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 3 RRKSKRKPPPKRKNIEPLDIQFNCPFC 29
+K KRKPP KR N L PF
Sbjct: 65 EKKWKRKPPGKRVNYSKLG--VGNPFS 89
>gnl|CDD|219501 pfam07657, MNNL, N terminus of Notch ligand. This entry
represents a region of conserved sequence at the N
terminus of several Notch ligand proteins.
Length = 77
Score = 24.2 bits (53), Expect = 4.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 40 DKGRNSARIACRVCLEDFQTTI 61
D R+ R RVCL+ +Q T+
Sbjct: 32 DCCRDPCRTFFRVCLKHYQATV 53
>gnl|CDD|227624 COG5308, NUP170, Nuclear pore complex subunit [Intracellular
trafficking and secretion].
Length = 1263
Score = 24.9 bits (54), Expect = 5.1
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 38 KMDKGRNSARIACRVCLEDFQTTINFLSEAIDVYNDWVDASVP 80
+K N + ++ +E + + I+FL E ++ ++
Sbjct: 633 MQNKMINIRGASIKIKIEYYLSGIDFLDEFLENNKSSIEGLNS 675
>gnl|CDD|217148 pfam02620, DUF177, Uncharacterized ACR, COG1399.
Length = 118
Score = 24.6 bits (54), Expect = 6.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 50 CRVCLEDFQTTINFLSEAIDVYND 73
C CLE + ++ E + V +
Sbjct: 13 CDRCLEPVEYPLDVDFEELFVPEE 36
>gnl|CDD|198317 cd03208, GST_C_Alpha, C-terminal, alpha helical domain of Class
Alpha Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, Class
Alpha subfamily; GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins,
and products of oxidative stress. The GST fold contains
an N-terminal thioredoxin-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. GSH binds to the
N-terminal domain while the hydrophobic substrate
occupies a pocket in the C-terminal domain. The class
Alpha subfamily is composed of vertebrate GSTs which can
form homodimer and heterodimers. There are at least six
types of class Alpha GST subunits in rats, four of which
have human counterparts, resulting in many possible
isoenzymes with different activities, tissue
distribution and substrate specificities. Human GSTA1-1
and GSTA2-2 show high GSH peroxidase activity. GSTA3-3
catalyzes the isomerization of intermediates in steroid
hormone biosynthesis. GSTA4-4 preferentially catalyzes
the GSH conjugation of alkenals.
Length = 135
Score = 24.2 bits (53), Expect = 7.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 6 SKRKPPPKRKNIE 18
SKRKPPP K +E
Sbjct: 117 SKRKPPPDEKYVE 129
>gnl|CDD|224246 COG1327, COG1327, Predicted transcriptional regulator, consists
of a Zn-ribbon and ATP-cone domains [Transcription].
Length = 156
Score = 24.1 bits (53), Expect = 9.9
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 26 CPFCNHEKS 34
CPFC HE +
Sbjct: 3 CPFCGHEDT 11
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.431
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,888,469
Number of extensions: 272057
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 18
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)