RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3498
         (81 letters)



>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score =  118 bits (298), Expect = 1e-37
 Identities = 47/75 (62%), Positives = 58/75 (77%)

Query: 3  RRKSKRKPPPKRKNIEPLDIQFNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTIN 62
             S RKPPPK+K    L+ QF CPFCNHEKSC+VKMD+ RN+  I+C VCLE+FQT I 
Sbjct: 3  SGSSGRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPIT 62

Query: 63 FLSEAIDVYNDWVDA 77
          +LSE +DVY+DW+DA
Sbjct: 63 YLSEPVDVYSDWIDA 77


>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog
           {Lactococcus lactis, DpsB [TaxId: 1358]}
          Length = 171

 Score = 25.5 bits (56), Expect = 0.72
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 45  SARIACRVCLEDFQTTINFLSEAIDV 70
           +        + DFQ    F++ AI +
Sbjct: 108 TDEDLLESFIVDFQAQNMFITRAIKL 133


>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
           molybdoprotein {Oligotropha carboxidovorans, formerly
           Pseudomonas carboxydovorans [TaxId: 40137]}
          Length = 663

 Score = 23.0 bits (48), Expect = 6.5
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 24  FNCPFCNHEKSCEVKMDKGRNSARIACRVCLEDFQTTIN 62
              PF  +   C + +D     A+      L+D  T IN
Sbjct: 509 MTYPFGAY--FCIMDIDVDTGVAKTRRFYALDDCGTRIN 545


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 315,678
Number of extensions: 12206
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 16
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)