BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3499
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DBB|A Chain A, The Ptb Domain Of Mint1 Is Autoinhibited By A Helix In The
C-Terminal Linker Region
Length = 162
Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 74/127 (58%), Gaps = 38/127 (29%)
Query: 4 EPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK---------------- 47
+P LI+G++F A YLGSTQL+ + P+K+ RMMQA+EAVSRIK
Sbjct: 1 DPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEVDLFIS 60
Query: 48 ------------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMIC 95
E MMDH LRTISYIADIG++VVLMARRR + KMIC
Sbjct: 61 TQRIKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRSQY----------KMIC 110
Query: 96 HVFESDE 102
HVFES++
Sbjct: 111 HVFESED 117
>pdb|3SV1|A Chain A, Crystal Structure Of App Peptide Bound Rat Mint2 Parm
pdb|3SV1|B Chain B, Crystal Structure Of App Peptide Bound Rat Mint2 Parm
pdb|3SV1|C Chain C, Crystal Structure Of App Peptide Bound Rat Mint2 Parm
Length = 190
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 78/143 (54%), Gaps = 48/143 (33%)
Query: 8 LIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------------- 47
LI+G++F A YLGSTQL+ E P+K+ RMMQA+EAVSR+K
Sbjct: 5 LIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQT 64
Query: 48 ---------------------EIMMDHALRTISYIADIGDLVVLMARRRF---VSQEADE 83
E MMDHALRTISYIADIG++VVLMARRR SQ+ E
Sbjct: 65 LTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIE 124
Query: 84 PP----KISRTPKMICHVFESDE 102
+ + KMICHVFES++
Sbjct: 125 TTPGAQEGKKQYKMICHVFESED 147
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 73/136 (53%), Gaps = 47/136 (34%)
Query: 8 LIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------------- 47
LI+G++F A YLGSTQL+ E P+K+ RMMQA+EAVSR+K
Sbjct: 5 LIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQT 64
Query: 48 ---------------------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPK 86
E MMDHALRTISYIADIG++VVLMARRR
Sbjct: 65 LTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSAG----- 119
Query: 87 ISRTPKMICHVFESDE 102
+ KMICHVFES++
Sbjct: 120 -KKQYKMICHVFESED 134
>pdb|1AQC|A Chain A, X11 Ptb Domain-10mer Peptide Complex
pdb|1AQC|B Chain B, X11 Ptb Domain-10mer Peptide Complex
pdb|1X11|A Chain A, X11 Ptb Domain
pdb|1X11|B Chain B, X11 Ptb Domain
Length = 172
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 70/142 (49%), Gaps = 47/142 (33%)
Query: 8 LIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------------- 47
LI+G++F A YLGSTQL+ + P+K+ R QA+EAVSRIK
Sbjct: 4 LIDGIIFAANYLGSTQLLSDKTPSKNVRXXQAQEAVSRIKXAQKLAKSRKKAPEGESQPX 63
Query: 48 --------------------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKI 87
E DH LRTISYIADIG++VVL ARRR + E +
Sbjct: 64 TEVDLFILTQRIKVLNADTQETXXDHPLRTISYIADIGNIVVLXARRRIPRSNSQENVEA 123
Query: 88 S-------RTPKMICHVFESDE 102
S R K ICHVFES++
Sbjct: 124 SHPSQDGKRQYKXICHVFESED 145
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 3 HEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKEIMMDHAL 55
H+ + LI G+ FR +G + P +S ++Q ++ + ++M H +
Sbjct: 91 HDNAQLITGIDFRGSIIGYAYIGSMCHPKRSVGIIQDYSPINLVLAVIMAHEM 143
>pdb|3V03|A Chain A, Crystal Structure Of Bovine Serum Albumin
pdb|3V03|B Chain B, Crystal Structure Of Bovine Serum Albumin
pdb|4F5S|A Chain A, Crystal Structure Of Bovine Serum Albumin
pdb|4F5S|B Chain B, Crystal Structure Of Bovine Serum Albumin
Length = 583
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 76 FVSQEADEP--PKISRTPKMICHVFESDE 102
F+S + D P PK+ P +C F++DE
Sbjct: 102 FLSHKDDSPDLPKLKPDPNTLCDEFKADE 130
>pdb|1RV9|A Chain A, Crystal Structure Of Neisseria Meningitidis Protein
Nmb0706, Pfam Duf152
Length = 259
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 33 STRMMQAEEAVSRIKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPK 92
T + EAV R +EI+ ++Y+ I VV+ A + D + T K
Sbjct: 50 GTHVGDNPEAVRRNREIVQQQVGLPVAYLNQIHSTVVVNAAEA-LGGTPDADASVDDTGK 108
Query: 93 MICHVFESD 101
+ C V +D
Sbjct: 109 VACAVMTAD 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,729,597
Number of Sequences: 62578
Number of extensions: 81445
Number of successful extensions: 126
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 13
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)