BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3499
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O17583|LIN10_CAEEL Protein lin-10 OS=Caenorhabditis elegans GN=lin-10 PE=1 SV=1
Length = 982
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 89/150 (59%), Gaps = 47/150 (31%)
Query: 1 MPHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK------------- 47
M HEP+VLIEGVLFRARYLGSTQ++CE + +K+ RM QA+EAV+R+K
Sbjct: 594 MVHEPAVLIEGVLFRARYLGSTQMLCESRGSKAARMAQAQEAVARVKAPEGDVQPSTEID 653
Query: 48 -------------------------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEAD 82
+I+MDHALRTISYIADIGDLVVLMARR S +D
Sbjct: 654 LFISTEKIMVLNTDLQRISDTDVRQDILMDHALRTISYIADIGDLVVLMARRMSTSH-SD 712
Query: 83 EP--------PKISRTPKMICHVFESDEIA 104
E + +TPK+ICHVFESDE +
Sbjct: 713 ESCSDGDSSGGGVRKTPKVICHVFESDEAS 742
>sp|O35431|APBA2_RAT Amyloid beta A4 precursor protein-binding family A member 2
OS=Rattus norvegicus GN=Apba2 PE=1 SV=1
Length = 750
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 81/154 (52%), Gaps = 58/154 (37%)
Query: 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------- 47
P EP LI+G++F A YLGSTQL+ E P+K+ RMMQA+EAVSR+K
Sbjct: 361 PCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANS 420
Query: 48 ---------------------------EIMMDHALRTISYIADIGDLVVLMARRRF---V 77
E MMDHALRTISYIADIG++VVLMARRR
Sbjct: 421 EGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSA 480
Query: 78 SQEADEPPKISRTP---------KMICHVFESDE 102
SQ+ I TP KMICHVFES++
Sbjct: 481 SQDC-----IETTPGAQEGKKQYKMICHVFESED 509
>sp|Q5RD33|APBA2_PONAB Amyloid beta A4 precursor protein-binding family A member 2
OS=Pongo abelii GN=APBA2 PE=2 SV=1
Length = 749
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 81/154 (52%), Gaps = 58/154 (37%)
Query: 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------- 47
P EP LI+G++F A YLGSTQL+ E P+K+ RMMQA+EAVSR+K
Sbjct: 360 PCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANS 419
Query: 48 ---------------------------EIMMDHALRTISYIADIGDLVVLMARRRF---V 77
E MMDHALRTISYIADIG++VVLMARRR
Sbjct: 420 EGDAQTLTEVDLFISAQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSA 479
Query: 78 SQEADEPPKISRTP---------KMICHVFESDE 102
SQ+ I TP KMICHVFES++
Sbjct: 480 SQDC-----IETTPGAQEGKKQYKMICHVFESED 508
>sp|Q99767|APBA2_HUMAN Amyloid beta A4 precursor protein-binding family A member 2 OS=Homo
sapiens GN=APBA2 PE=1 SV=3
Length = 749
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 81/154 (52%), Gaps = 58/154 (37%)
Query: 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------- 47
P EP LI+G++F A YLGSTQL+ E P+K+ RMMQA+EAVSR+K
Sbjct: 360 PCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANS 419
Query: 48 ---------------------------EIMMDHALRTISYIADIGDLVVLMARRRF---V 77
E MMDHALRTISYIADIG++VVLMARRR
Sbjct: 420 EGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSA 479
Query: 78 SQEADEPPKISRTP---------KMICHVFESDE 102
SQ+ I TP KMICHVFES++
Sbjct: 480 SQDC-----IETTPGAQEGKKQYKMICHVFESED 508
>sp|Q02410|APBA1_HUMAN Amyloid beta A4 precursor protein-binding family A member 1 OS=Homo
sapiens GN=APBA1 PE=1 SV=3
Length = 837
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 79/148 (53%), Gaps = 47/148 (31%)
Query: 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------- 47
P +P LI+G++F A YLGSTQL+ + P+K+ RMMQA+EAVSRIK
Sbjct: 449 PCDPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPE 508
Query: 48 --------------------------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEA 81
E MMDH LRTISYIADIG++VVLMARRR +
Sbjct: 509 GESQPMTEVDLFISTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRMPRSNS 568
Query: 82 DEPPKIS-------RTPKMICHVFESDE 102
E + S R KMICHVFES++
Sbjct: 569 QENVEASHPSQDGKRQYKMICHVFESED 596
>sp|B2RUJ5|APBA1_MOUSE Amyloid beta A4 precursor protein-binding family A member 1 OS=Mus
musculus GN=Apba1 PE=2 SV=2
Length = 842
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 79/148 (53%), Gaps = 47/148 (31%)
Query: 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------- 47
P +P LI+G++F A YLGSTQL+ + P+K+ RMMQA+EAVSRIK
Sbjct: 454 PCDPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKTAQKLAKSRKKAPE 513
Query: 48 --------------------------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEA 81
E MMDH LRTISYIADIG++VVLMARRR +
Sbjct: 514 GESQPMTEVDLFISTQRIKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRSNS 573
Query: 82 DEPPKIS-------RTPKMICHVFESDE 102
E + S R KMICHVFES++
Sbjct: 574 QENVEASHPSQDGKRQYKMICHVFESED 601
>sp|O35430|APBA1_RAT Amyloid beta A4 precursor protein-binding family A member 1
OS=Rattus norvegicus GN=Apba1 PE=1 SV=1
Length = 839
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 79/148 (53%), Gaps = 47/148 (31%)
Query: 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------- 47
P +P LI+G++F A YLGSTQL+ + P+K+ RMMQA+EAVSRIK
Sbjct: 451 PCDPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKTAQKLAKSRKKAPE 510
Query: 48 --------------------------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEA 81
E MMDH LRTISYIADIG++VVLMARRR +
Sbjct: 511 GESQPMTEVDLFISTQRIKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRSNS 570
Query: 82 DEPPKIS-------RTPKMICHVFESDE 102
E + S R KMICHVFES++
Sbjct: 571 QENVEASHPSQDAKRQYKMICHVFESED 598
>sp|P98084|APBA2_MOUSE Amyloid beta A4 precursor protein-binding family A member 2 OS=Mus
musculus GN=Apba2 PE=1 SV=2
Length = 750
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 80/154 (51%), Gaps = 58/154 (37%)
Query: 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------- 47
P E LI+G++F A YLGSTQL+ E P+K+ RMMQA+EAVSR+K
Sbjct: 361 PCEAEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANS 420
Query: 48 ---------------------------EIMMDHALRTISYIADIGDLVVLMARRRF---V 77
E MMDHALRTISYIADIG++VVLMARRR
Sbjct: 421 EGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSA 480
Query: 78 SQEADEPPKISRTP---------KMICHVFESDE 102
SQ+ I TP KMICHVFES++
Sbjct: 481 SQDC-----IETTPGAQEGKKQYKMICHVFESED 509
>sp|O70248|APBA3_RAT Amyloid beta A4 precursor protein-binding family A member 3
OS=Rattus norvegicus GN=Apba3 PE=2 SV=2
Length = 569
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 72/124 (58%), Gaps = 30/124 (24%)
Query: 8 LIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------------- 47
L++GVLF A+YLGSTQL+ E P STRM QA+EA+ R+K
Sbjct: 210 LMDGVLFGAKYLGSTQLLSERNPPPSTRMGQAQEAMDRVKAPEGETQPMTEVDIFISTKR 269
Query: 48 ---------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVF 98
+ +MDHAL+TISYIADIG ++VLMARRR + + + + KM+CHVF
Sbjct: 270 VKVLAADSQDALMDHALQTISYIADIGPVLVLMARRRLAKRTTSQ-DRQRQLYKMLCHVF 328
Query: 99 ESDE 102
S++
Sbjct: 329 HSED 332
>sp|O96018|APBA3_HUMAN Amyloid beta A4 precursor protein-binding family A member 3 OS=Homo
sapiens GN=APBA3 PE=1 SV=1
Length = 575
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 69/124 (55%), Gaps = 30/124 (24%)
Query: 8 LIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------------- 47
L++GV+F ARYLGSTQLV E P STRM QA EA+ R+K
Sbjct: 215 LLDGVIFGARYLGSTQLVSERNPPTSTRMAQAREAMDRVKAPDGETQPMTEVDLFVSTKR 274
Query: 48 ---------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVF 98
E MMDHAL TISY ADIG ++VLMARRR + A + R KM+CHVF
Sbjct: 275 IKVLTADSQEAMMDHALHTISYTADIGCVLVLMARRRLARRPAPQ-DHGRRLYKMLCHVF 333
Query: 99 ESDE 102
+++
Sbjct: 334 YAED 337
>sp|O88888|APBA3_MOUSE Amyloid beta A4 precursor protein-binding family A member 3 OS=Mus
musculus GN=Apba3 PE=1 SV=1
Length = 571
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 30/130 (23%)
Query: 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------- 47
P P L++GV+F A+YLGSTQL+ E P STRM QA+EA+ R+K
Sbjct: 206 PCGPEELMDGVIFGAKYLGSTQLLSERSPAPSTRMGQAQEAMDRVKAPEGETQPMVEVDI 265
Query: 48 ---------------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPK 92
+ +MDHAL+TISYIADIG ++VLMARRR + + + R K
Sbjct: 266 FISTKRVKVLAADSQDALMDHALQTISYIADIGPVLVLMARRRLARRTTPQ-DRQRRLYK 324
Query: 93 MICHVFESDE 102
M+CHVF S++
Sbjct: 325 MLCHVFHSED 334
>sp|Q890X1|ALR_CLOTE Alanine racemase OS=Clostridium tetani (strain Massachusetts / E88)
GN=alr PE=3 SV=1
Length = 387
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 32 KSTRMMQAEEAVSRIKEIMMDHALRTISYIAD--IGDLVVLMARRRFVSQEADE 83
K +++ E+ + I MD + +S+I D IGD V+LM + + A+E
Sbjct: 297 KGGKIILKEQLAPLVGRICMDQCMIDVSHIEDVKIGDEVILMGENKGIKMTAEE 350
>sp|A5WHA7|PAND_PSYWF Aspartate 1-decarboxylase OS=Psychrobacter sp. (strain PRwf-1)
GN=panD PE=3 SV=1
Length = 126
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 59 SYIADIGDLVVLMARRRFVSQEAD-EPPKI 87
+Y+AD+GD+V++ A + QEAD PK+
Sbjct: 76 AYMADLGDIVIICAYAQMDEQEADTHKPKL 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,988,205
Number of Sequences: 539616
Number of extensions: 1117502
Number of successful extensions: 2803
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2767
Number of HSP's gapped (non-prelim): 29
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)