Query psy3499
Match_columns 108
No_of_seqs 65 out of 67
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 18:15:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3605|consensus 100.0 3.8E-52 8.2E-57 366.3 2.7 106 1-106 439-591 (829)
2 cd01208 X11 X11 Phosphotyrosin 100.0 7E-43 1.5E-47 263.3 6.3 98 8-105 1-134 (156)
3 cd01209 SHC SHC phosphotyrosin 99.9 2.2E-22 4.7E-27 152.6 5.7 84 8-105 7-144 (160)
4 cd01273 CED-6 CED-6 Phosphotyr 99.5 2.8E-15 6E-20 108.9 3.6 82 5-104 1-123 (142)
5 PF00640 PID: Phosphotyrosine 99.0 2.1E-10 4.6E-15 78.9 4.0 75 14-102 1-117 (140)
6 cd01267 CED6_AIDA1b Phosphotyr 99.0 2.2E-10 4.8E-15 81.4 3.0 77 12-104 2-111 (132)
7 cd01274 AIDA-1b AIDA-1b Phosph 98.9 3.3E-10 7.2E-15 81.9 2.2 71 12-102 2-104 (127)
8 smart00462 PTB Phosphotyrosine 98.7 2E-08 4.3E-13 69.1 3.7 75 10-103 2-109 (134)
9 cd00934 PTB Phosphotyrosine-bi 98.6 4.6E-08 1E-12 65.8 3.4 74 11-103 1-107 (123)
10 cd01268 Numb Numb Phosphotyros 98.3 2.9E-07 6.3E-12 68.3 2.8 84 2-101 3-113 (138)
11 cd01270 DYC-1 DYC-1 (DYB-1 bin 98.1 3.2E-06 7E-11 63.2 3.7 74 10-102 1-119 (140)
12 cd01216 Fe65 Fe65 Phosphotyros 97.4 0.00011 2.4E-09 52.9 3.0 73 12-102 2-102 (123)
13 cd01271 Fe65_C Fe65 C-terminal 97.4 0.00017 3.6E-09 53.4 3.6 29 13-47 3-31 (124)
14 cd01212 JIP JNK-interacting pr 97.3 0.0007 1.5E-08 50.5 5.5 17 13-29 4-20 (148)
15 cd01215 Dab Disabled (Dab) Pho 97.3 0.00012 2.6E-09 54.8 1.3 52 10-67 11-93 (139)
16 KOG3697|consensus 93.8 0.028 6.1E-07 47.6 1.2 42 5-46 10-52 (345)
17 cd01214 CG8312 CG8312 Phosphot 92.6 0.15 3.2E-06 38.1 3.4 27 14-46 4-30 (133)
18 cd01211 GAPCenA GAPCenA Phosph 78.8 0.83 1.8E-05 34.1 0.6 15 16-30 6-20 (125)
19 COG3140 Uncharacterized protei 67.2 5 0.00011 26.7 2.1 17 36-52 10-26 (60)
20 COG0251 TdcF Putative translat 54.5 22 0.00048 25.4 3.8 64 2-67 18-87 (130)
21 PRK05114 hypothetical protein; 52.5 14 0.0003 24.6 2.2 17 35-51 9-25 (59)
22 cd01213 tensin Tensin Phosphot 51.2 54 0.0012 24.5 5.5 23 8-30 2-24 (138)
23 KOG4458|consensus 50.2 7.4 0.00016 26.9 0.7 34 8-47 30-63 (78)
24 PF03701 UPF0181: Uncharacteri 50.1 16 0.00035 23.6 2.2 15 37-51 11-25 (51)
25 KOG3536|consensus 44.2 5.5 0.00012 33.9 -0.8 22 3-24 37-59 (321)
26 TIGR00004 endoribonuclease L-P 40.1 51 0.0011 22.6 3.7 32 37-68 48-85 (124)
27 PF15015 NYD-SP12_N: Spermatog 35.3 43 0.00092 30.5 3.3 49 17-67 439-498 (569)
28 KOG3537|consensus 31.3 50 0.0011 29.9 3.1 29 13-47 38-66 (543)
29 cd06153 YjgF_YER057c_UK114_lik 26.1 43 0.00093 23.3 1.4 32 37-68 36-78 (114)
30 cd06154 YjgF_YER057c_UK114_lik 23.6 1.2E+02 0.0026 20.8 3.3 33 37-69 44-82 (119)
31 KOG4420|consensus 23.3 40 0.00087 28.8 1.0 51 17-67 101-157 (325)
32 cd06155 eu_AANH_C_1 A group of 22.6 95 0.0021 20.7 2.6 38 33-71 23-66 (101)
33 PF00379 Chitin_bind_4: Insect 21.0 26 0.00057 21.1 -0.4 11 54-64 39-49 (52)
34 cd01269 PLX Pollux (PLX) Phosp 20.7 52 0.0011 24.8 1.0 15 89-103 97-111 (129)
No 1
>KOG3605|consensus
Probab=100.00 E-value=3.8e-52 Score=366.35 Aligned_cols=106 Identities=67% Similarity=0.975 Sum_probs=99.0
Q ss_pred CCCCCccccccceeeeccccceeeeecCCCCchhhhHHHHHHHHHH----------------------------------
Q psy3499 1 MPHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRI---------------------------------- 46 (108)
Q Consensus 1 gp~~pe~Li~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~ri---------------------------------- 46 (108)
|||+|||||+||||+|+|||||||+||++|+|++||+||||||+||
T Consensus 439 g~~epe~LidGvif~A~ylgsTqllse~~psk~~rm~Qaqeavsrvk~~~~~~~s~~~Apegesqp~tevdlfist~ri~ 518 (829)
T KOG3605|consen 439 GPCEPEDLIDGVIFGARYLGSTQLLSERNPSKAVRMMQAQEAVSRVKGGQKNAKSGKKAPEGESQPMTEVDLFISTQRIK 518 (829)
T ss_pred CCCCHHHhhhhheeecccccccccccCCCCcHHHHHHHHHHHHhhhccccccccccccCCCCCCCcceeeeeeeecceeE
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred ------HHHHHhhhhhhhheeeeecceeeeeeeeccCccCCC-------CCCCCCCCCeEEEeeeccCccccC
Q psy3499 47 ------KEIMMDHALRTISYIADIGDLVVLMARRRFVSQEAD-------EPPKISRTPKMICHVFESDEIASA 106 (108)
Q Consensus 47 ------ke~mMdh~LrtISYIADIG~ivVlMARR~~~~~~~~-------~~~~~~~~~kmiCHVf~sedAQ~~ 106 (108)
||+||||+||||||||||||+||||||||+++.++. +...++|+|||||||||||||||.
T Consensus 519 VLnadlqe~mmdhaLrtisyiadIg~lvvlMarrr~~~~s~~~~~~~~~~~~~~~rtpKMICHVFESdeAQfI 591 (829)
T KOG3605|consen 519 VLNADLQETMMDHALRTISYIADIGNVVVLMARRRDVRSSSEDCSEDIDPAQKGNRTPKMICHVFESDEAQFI 591 (829)
T ss_pred EEechhHHhhhhhhhhhhHHHhhhhHHHHHHHHhhcccccccccCCCCCcccccCCCcceEEEEeccchHHHH
Confidence 389999999999999999999999999999985431 134788999999999999999983
No 2
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=100.00 E-value=7e-43 Score=263.31 Aligned_cols=98 Identities=74% Similarity=1.051 Sum_probs=87.7
Q ss_pred ccccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH-----------------------------HHHHhhhhhhh
Q psy3499 8 LIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-----------------------------EIMMDHALRTI 58 (108)
Q Consensus 8 Li~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik-----------------------------e~mMdh~LrtI 58 (108)
||+||+|+|+|||||||+||++|++++||+|||||++||| ++||||+||+|
T Consensus 1 l~~Gv~f~a~YlG~t~~~~~~~~~~~tR~~~a~Eai~rik~~eG~~~~~t~V~L~IS~~gV~v~~~~tk~im~~h~L~~I 80 (156)
T cd01208 1 LIEGVLFRARYLGSTQLLCEKTPSKNVRMXQAQEAVSRIKAPEGESQPSTEVDLFISTEKIMVLNTDLQEIXMDHALRTI 80 (156)
T ss_pred CcCceEEEEEeeceeeeeecCCCChhhhHHHHHHHHHHHhccccCCCCCcEEEEEEEeCeEEEEecCccceeccCcccce
Confidence 8999999999999999999999999999999999999994 89999999999
Q ss_pred heeeeecceeeeeeeeccCccCCCC-------CCCCCCCCeEEEeeeccCcccc
Q psy3499 59 SYIADIGDLVVLMARRRFVSQEADE-------PPKISRTPKMICHVFESDEIAS 105 (108)
Q Consensus 59 SYIADIG~ivVlMARR~~~~~~~~~-------~~~~~~~~kmiCHVf~sedAQ~ 105 (108)
|||||||++||+||||+..+....+ ...+.+++||+||||+|++||.
T Consensus 81 Sy~AD~~d~~v~mAkr~~~~~~~~~~~~~~~~~~~~~~~~k~~ChVFes~~Aq~ 134 (156)
T cd01208 81 SYIADIGDLVVLMARRRIPRSSSQENSEASHPSQDGKRTPKXICHVFESDEAQF 134 (156)
T ss_pred EEEecCCCeEEEEEeccccccccccccccCCcccccccccceeEEEEecCcHHH
Confidence 9999999999999999986532211 1244678999999999999985
No 3
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.86 E-value=2.2e-22 Score=152.58 Aligned_cols=84 Identities=26% Similarity=0.472 Sum_probs=76.4
Q ss_pred ccccceeeeccccceeee-ecCCCCchhhhHHHHHHHHHH----------------------------------------
Q psy3499 8 LIEGVLFRARYLGSTQLV-CEGQPTKSTRMMQAEEAVSRI---------------------------------------- 46 (108)
Q Consensus 8 Li~GviF~a~ylGsTql~-se~~p~ks~rM~Qaqeav~ri---------------------------------------- 46 (108)
+-.||.|.++||||||++ |.+++.+++||+++|||++||
T Consensus 7 ~~~GV~y~vrYlG~~eV~~Smr~~~~~~Rtqv~rEaI~rV~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~V~l~IS~~~v 86 (160)
T cd01209 7 MGPGVSYLVRYMGCVEVLQSMRALDFETRTQVTRECISLVCEAVGGAKAATERNLNSILGRSNLKFAGMPITINVSSSSL 86 (160)
T ss_pred hcCCcEEEEEEeeEEeehhhcccCCcchhHHHHHHHHHHHHhccccccccccccccccccCccccccCceEEEEEEeeEE
Confidence 446999999999999999 999999999999999999999
Q ss_pred -------HHHHHhhhhhhhheee----eecceeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCc--ccc
Q psy3499 47 -------KEIMMDHALRTISYIA----DIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--IAS 105 (108)
Q Consensus 47 -------ke~mMdh~LrtISYIA----DIG~ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sed--AQ~ 105 (108)
|++||+|+|++|||+| |+.+.+..+|+++. .+..||||+++| ||.
T Consensus 87 ~~~~~~t~~ii~~H~l~~ISfaa~gd~d~~~~~ayIAKd~~--------------~~r~ChVf~~~~~lAq~ 144 (160)
T cd01209 87 NLMAQDCKQIIANHHMQSISFASGGDPDTAEYVAYIAKNPD--------------NQRACHVLECPEGLAQD 144 (160)
T ss_pred EEeccCchhHHhcCCCcceEEEeCCCCCcceeEEEEEcCCC--------------CCceeEEEEcCCchHHH
Confidence 3899999999999999 89999999999863 256899999988 763
No 4
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.55 E-value=2.8e-15 Score=108.91 Aligned_cols=82 Identities=28% Similarity=0.416 Sum_probs=65.1
Q ss_pred Ccccccc-ceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH------------------------------------
Q psy3499 5 PSVLIEG-VLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK------------------------------------ 47 (108)
Q Consensus 5 pe~Li~G-viF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik------------------------------------ 47 (108)
||+|++| |.|.++||||+++...+ .+...+||+++|+
T Consensus 1 p~~l~~g~v~f~vkyLG~~eV~~~~------g~~v~~eAi~ki~~a~~~k~~~~~~~~k~~~V~L~IS~~GI~v~d~~t~ 74 (142)
T cd01273 1 PEYLINGHVEYVAKFLGCVEVDQPK------GSEVVREAIRKLRFARDLKKSEQTRTAKLQKVEIRISIDGVIIAEPKTK 74 (142)
T ss_pred ChhHccCceEEEEEEeeeEEecCCC------CchHHHHHHHHHHHHHhhhhccccccccCcEEEEEEECCeEEEEEcCCC
Confidence 8999999 89999999999998765 4788999999872
Q ss_pred HHHHhhhhhhhheeeeecce---eeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCc-cc
Q psy3499 48 EIMMDHALRTISYIADIGDL---VVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-IA 104 (108)
Q Consensus 48 e~mMdh~LrtISYIADIG~i---vVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sed-AQ 104 (108)
+.+++|+|+.|||+|+..+- +-+++|.... ..++.||||.|++ ||
T Consensus 75 ~~~~~~~i~~ISfca~d~~~~r~FayIak~~~~------------~~~~~ChvF~s~~~A~ 123 (142)
T cd01273 75 APMHTFPLGRISFCADDKDDKRMFSFIAKAEGA------------SGKHSCFVFTSEKLAE 123 (142)
T ss_pred cEEEEcCcceEEEEecCCCCCeEEEEEecCCCC------------CCcEEEEEEeccchHH
Confidence 57889999999999977654 3555554321 1379999999987 44
No 5
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=99.04 E-value=2.1e-10 Score=78.95 Aligned_cols=75 Identities=37% Similarity=0.668 Sum_probs=59.3
Q ss_pred eeeccccceeeeecCCCCchhhhHHHHHHHHHHH-------------------------------------HHHHhhhhh
Q psy3499 14 FRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------------------------------EIMMDHALR 56 (108)
Q Consensus 14 F~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik-------------------------------------e~mMdh~Lr 56 (108)
|.++||||+++.+.+++.++.|+...++|+.+++ +.+++|+|+
T Consensus 1 F~vkYLGs~~V~~~~~~~~~~g~~~v~~ai~~~~~~~~~~~~~~~~~~~~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~ 80 (140)
T PF00640_consen 1 FEVKYLGSVEVSSSRRGDKSRGSDVVREAIQRLKAEKIAKSKKSKSNKKKPQKVTLNVSSDGIKVIDPDTGEVLMSHPIR 80 (140)
T ss_dssp EEEEEEEEEEESSSSSTCHHHHHHHHHHHHHHHHHHCCCSHHHHHTTTSTSEEEEEEEETTEEEEEETTTTCEEEEEEGG
T ss_pred CEEEEEEEEEECCccCCCcchhHHHHHHHHHHHHhhhhhhhhccccccccCeEEEEEEcCCeEEEecCccccccccCCcc
Confidence 8899999999999988999999999999999973 567789999
Q ss_pred hhheeeeecce----eeee-eeeccCccCCCCCCCCCCCCeEEEeeeccCc
Q psy3499 57 TISYIADIGDL----VVLM-ARRRFVSQEADEPPKISRTPKMICHVFESDE 102 (108)
Q Consensus 57 tISYIADIG~i----vVlM-ARR~~~~~~~~~~~~~~~~~kmiCHVf~sed 102 (108)
.|||.+- |+. ++.+ ++ ..+..++.||||.+++
T Consensus 81 ~Is~~~~-~d~~~~~~Fafi~~-------------~~~~~~~~CHVF~~~~ 117 (140)
T PF00640_consen 81 RISFCAV-GDPDDKRVFAFIAR-------------DPRSSRFYCHVFKCED 117 (140)
T ss_dssp GEEEEEE-SSTTETTEEEEEEE-------------ETSSSCEEEEEEEESS
T ss_pred ceEEEEe-cCCCcceEEEEEec-------------cCCCCccccEeeeHhh
Confidence 9999886 443 1111 11 1233489999999887
No 6
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.00 E-value=2.2e-10 Score=81.45 Aligned_cols=77 Identities=30% Similarity=0.406 Sum_probs=53.2
Q ss_pred ceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH---------------------------------HHHHhhhhhhh
Q psy3499 12 VLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK---------------------------------EIMMDHALRTI 58 (108)
Q Consensus 12 viF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik---------------------------------e~mMdh~LrtI 58 (108)
|.|.++||||+++...+ . ....++|+.+++ +.+++|+|+.|
T Consensus 2 v~f~vkyLGs~~V~~~~-g-----~~~~~~Ai~~l~~~~~~~~~~~~k~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~I 75 (132)
T cd01267 2 VVYRAKFLGSLEIGKLK-G-----TEVAREAIRKLKFSRILKTAEWEKIPKVELDISIKGVKIIDPKTKTVLHGHPLYNI 75 (132)
T ss_pred cEEEEEEEEEEEecCCC-C-----hHHHHHHHHHHHhhhhcchhccCCCCeEEEEEEcCcEEEEeCCCCcEEEEcccceE
Confidence 68999999999996553 2 245666766663 56788999999
Q ss_pred heeeeecceeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCccc
Q psy3499 59 SYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEIA 104 (108)
Q Consensus 59 SYIADIG~ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sedAQ 104 (108)
||+++-.+-.-++|.--.. ++..++.||||.+++.+
T Consensus 76 Sfc~~d~~~~~~FafIa~~----------~~~~~~~ChvF~~~~~~ 111 (132)
T cd01267 76 SCCAQDKEDLRFFAFIAKD----------TETNKHYCHVFCSEKLG 111 (132)
T ss_pred EEEecCCCCCeEEEEEEec----------CCCCceEEEEEECCCHH
Confidence 9999655444444433211 11248999999998854
No 7
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=98.95 E-value=3.3e-10 Score=81.93 Aligned_cols=71 Identities=27% Similarity=0.482 Sum_probs=50.3
Q ss_pred ceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH-----------------------------HHHHhhhhhhhheee
Q psy3499 12 VLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-----------------------------EIMMDHALRTISYIA 62 (108)
Q Consensus 12 viF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik-----------------------------e~mMdh~LrtISYIA 62 (108)
|.|.++||||+++--.+ ... .+++||.++| +.+|+|+|+.|||++
T Consensus 2 v~f~akyLGs~eV~~~~-G~~-----~~~~Am~kik~~~~~~~k~~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~ISf~~ 75 (127)
T cd01274 2 VVYRAHYLGSLEIGELE-GTD-----STHAAMTKIKESIIDWETIPRVTLDLTCNGVKFIDETFKTLIDGHGIYNIRCVC 75 (127)
T ss_pred cEEEEEccceEEccCCC-CcH-----HHHHHHHHHHHhhhccCCCCEEEEEEeCCeEEEEECCCCeEEEEeeeeEEEEEe
Confidence 78999999999964433 333 4678888883 679999999999998
Q ss_pred -eecc--eeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCc
Q psy3499 63 -DIGD--LVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 102 (108)
Q Consensus 63 -DIG~--ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sed 102 (108)
|..+ .+-..+|. .. .++.||||.++.
T Consensus 76 ~D~~d~~~FayIakd-------------~~-~~~~CHvF~~~~ 104 (127)
T cd01274 76 QDREDLNFFAYITKD-------------TE-NRHYCHVFCVLT 104 (127)
T ss_pred cCCCCceEEEEEeeC-------------CC-CCEEEEEEEcCC
Confidence 5544 23333321 11 489999998654
No 8
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=98.67 E-value=2e-08 Score=69.08 Aligned_cols=75 Identities=31% Similarity=0.558 Sum_probs=56.2
Q ss_pred ccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH------------------------------HHHHhhhhhhhh
Q psy3499 10 EGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK------------------------------EIMMDHALRTIS 59 (108)
Q Consensus 10 ~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik------------------------------e~mMdh~LrtIS 59 (108)
+|+.|.++||||+.+...+ .+...++|+.+++ +.+++|+|+.||
T Consensus 2 ~~~~f~v~YLGs~~v~~~~------g~~~~~~ai~~l~~~~~~~~~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Is 75 (134)
T smart00462 2 SGVSFRVKYLGSVEVPEAR------GLQVVQEAIRKLRAAQGSEKKEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRIS 75 (134)
T ss_pred CceEEEEEEEEEEEecCCC------CcHHHHHHHHHHHHhhhhccCCCCEEEEEEECCcEEEEECCCCeEEEEccccceE
Confidence 6899999999999987654 6788899999994 357789999999
Q ss_pred eeeee---cceeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCcc
Q psy3499 60 YIADI---GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEI 103 (108)
Q Consensus 60 YIADI---G~ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sedA 103 (108)
|.+.- .+++.+.+|... .-++-||||..+.+
T Consensus 76 f~~~~~~~~~~F~fI~~~~~-------------~~~~~CHvF~c~~~ 109 (134)
T smart00462 76 FCAVGPDDLDVFGYIARDPG-------------SSRFACHVFRCEKA 109 (134)
T ss_pred EEecCCCCCcEEEEEeeCCC-------------CCeEEEEEEEcCch
Confidence 97743 445555544321 12799999997765
No 9
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=98.58 E-value=4.6e-08 Score=65.79 Aligned_cols=74 Identities=27% Similarity=0.578 Sum_probs=53.3
Q ss_pred cceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH------------------------------HHHHhhhhhhhhe
Q psy3499 11 GVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK------------------------------EIMMDHALRTISY 60 (108)
Q Consensus 11 GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik------------------------------e~mMdh~LrtISY 60 (108)
|+.|.++||||..+... ..+.+.++|+++++ +.++.|+|+.|||
T Consensus 1 ~~~f~v~ylG~~~v~~~------~g~~~~~~ai~~l~~~~~~~~~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~ 74 (123)
T cd00934 1 GISFNVKYLGSVEVPEP------RGSQVVRDAIRKLKAASKQGGEKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRISF 74 (123)
T ss_pred CcEEEEEEEEEEEecCC------CCchHHHHHHHHHHHhhhhcccCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEE
Confidence 67899999999999873 35678999999983 5677889999999
Q ss_pred eeee---cceeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCcc
Q psy3499 61 IADI---GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEI 103 (108)
Q Consensus 61 IADI---G~ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sedA 103 (108)
.+-- .+++-+.+|.. +..+..||||+.++.
T Consensus 75 ~~~~~~~~~~F~~i~~~~-------------~~~~~~CHvF~c~~~ 107 (123)
T cd00934 75 CAADPDDLRIFAFIAREP-------------GSSRFECHVFKCEKV 107 (123)
T ss_pred EECCCCCCcEEEEEEEcC-------------CCCcEEEEEEEeCch
Confidence 6622 33333333322 114899999998765
No 10
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=98.35 E-value=2.9e-07 Score=68.25 Aligned_cols=84 Identities=20% Similarity=0.343 Sum_probs=57.4
Q ss_pred CCCCccccccc-eeeeccccceeeeecCCCCchhhhHHHHHHHHHHH--------------------------HHHHhhh
Q psy3499 2 PHEPSVLIEGV-LFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK--------------------------EIMMDHA 54 (108)
Q Consensus 2 p~~pe~Li~Gv-iF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik--------------------------e~mMdh~ 54 (108)
.+|||.|+.|- -|.++||||+...-.+ -|.--++|+.++| +.+++|+
T Consensus 3 ~~~~~~~~~g~~~f~vKyLG~veV~~~r------G~~v~~~A~~klk~~~~k~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~ 76 (138)
T cd01268 3 QTDEEAVRTGTCSFPVKYLGHVEVDESR------GMQVCEDALKRLKASRRKPVKAVLWVSGDGLRVVDEKTKGLIVDQT 76 (138)
T ss_pred cCCHHHHhcCceeEEeEecceEEccCcC------CChHHHHHHHHHHhhccCCCEEEEEEecCcEEEEecCCCcEEEEEe
Confidence 47999999998 9999999999876443 3344667888773 6788899
Q ss_pred hhhhheeeeecceeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccC
Q psy3499 55 LRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD 101 (108)
Q Consensus 55 LrtISYIADIG~ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~se 101 (108)
|+.|||.|+-.+--=..|.- ......-++.||||-+.
T Consensus 77 i~~ISfca~D~~d~r~FayI----------akd~~~~r~~CHvF~~~ 113 (138)
T cd01268 77 IEKVSFCAPDRNFDRGFSYI----------CRDGTTRRWMCHGFLAV 113 (138)
T ss_pred EEEEEEEecCCCCCcEEEEE----------ecCCCcccEEEEEEEee
Confidence 99999988522210000000 11223448999999985
No 11
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=98.09 E-value=3.2e-06 Score=63.17 Aligned_cols=74 Identities=31% Similarity=0.609 Sum_probs=49.1
Q ss_pred ccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH------------------------------------------
Q psy3499 10 EGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK------------------------------------------ 47 (108)
Q Consensus 10 ~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik------------------------------------------ 47 (108)
.||-|.++||||+-..- | +.| ..+.+|+.||+
T Consensus 1 ~GitF~vKYlG~~eV~~---~--~g~-~~~~~A~rrir~~~ka~~~Kk~kV~l~VS~~Gv~v~d~k~~~~~~~~~~~~tk 74 (140)
T cd01270 1 HGITFEAKYVGSEEVPR---P--NTR-AEIVAAMRRIRYEFKAQNIKKRKVTIHVSVDGVKVVLKKKKRKKKNWTWDESK 74 (140)
T ss_pred CceEEEEEEcceEEecC---C--CCc-CHHHHHHHHHHHHHHHhCCCceeEEEEEecCcEEEEecccccccccccccCcc
Confidence 48999999999987643 2 233 56667888773
Q ss_pred HHHHhhhhhhhheeeeecc-e--eeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCc
Q psy3499 48 EIMMDHALRTISYIADIGD-L--VVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 102 (108)
Q Consensus 48 e~mMdh~LrtISYIADIG~-i--vVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sed 102 (108)
..+++|+|+.|||.++--+ . +=.+||. ....+..||||.++.
T Consensus 75 ~li~~~~i~rISf~a~D~~~~k~FayIakd-------------~~~~~~~ChvF~~~k 119 (140)
T cd01270 75 ILVMNHPIYRIFYVSHDSQDLKIFSYIARD-------------GASNTFKCNVFKSHK 119 (140)
T ss_pred cEEEecCeeEEEEeecCCCCCcEEEEEecC-------------CCCCceEEEEEEEcC
Confidence 2678899999999874222 1 1112221 123489999999985
No 12
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=97.44 E-value=0.00011 Score=52.92 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=46.8
Q ss_pred ceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH----------------------------HHHHhhhhhhhheeee
Q psy3499 12 VLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK----------------------------EIMMDHALRTISYIAD 63 (108)
Q Consensus 12 viF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik----------------------------e~mMdh~LrtISYIAD 63 (108)
..|..+||||+++-.++ =|.-..+|+..++ +.+.+.+|+.|||-++
T Consensus 2 ~~F~VkyLG~~eV~~~~------g~~vv~~ai~~L~~~~~~~~~~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Isf~~~ 75 (123)
T cd01216 2 KVFAVRSLGWVEVAEED------GSEALNKAIDDLSSCSNWEDWKDLNMDLAPSTLSLIDPDNLTVLHECRVRYLSFWGV 75 (123)
T ss_pred cEEEEEeeeeEEECCCC------CHHHHHHHHHHHHhccccccCeEEEEEEecCcEEEEcCCCCeEEEEEEeeEEEEEEc
Confidence 46999999999997776 3455677777772 3455677777877765
Q ss_pred ecceeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCc
Q psy3499 64 IGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 102 (108)
Q Consensus 64 IG~ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sed 102 (108)
|.-.=.+|.--. + + + .+..||||+++.
T Consensus 76 -gk~~r~FafI~~---~------~-~-~~~~CHVF~c~~ 102 (123)
T cd01216 76 -GRDVRDFAFIMR---T------E-R-RRFMCHVFRCEP 102 (123)
T ss_pred -CCCCcEEEEEEE---c------C-C-CeEEEEEEEcCC
Confidence 321122222211 1 1 1 589999999875
No 13
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=97.41 E-value=0.00017 Score=53.41 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.8
Q ss_pred eeeeccccceeeeecCCCCchhhhHHHHHHHHHHH
Q psy3499 13 LFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK 47 (108)
Q Consensus 13 iF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik 47 (108)
.|.++|||||+.-..+ =|.--.||+++++
T Consensus 3 ~f~~~yLG~~~V~~p~------Gmdvln~AI~~l~ 31 (124)
T cd01271 3 VFRVQYLGMLPVDKPT------GMEILNSAIDNLM 31 (124)
T ss_pred EEEEEEeccEeecCCc------cHHHHHHHHHHHH
Confidence 5999999999985433 3777889999884
No 14
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=97.26 E-value=0.0007 Score=50.50 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.3
Q ss_pred eeeeccccceeeeecCC
Q psy3499 13 LFRARYLGSTQLVCEGQ 29 (108)
Q Consensus 13 iF~a~ylGsTql~se~~ 29 (108)
-|.++||||+.....+.
T Consensus 4 ~f~vkyLGsveV~~~kG 20 (148)
T cd01212 4 RFLLGYLGSVEVLAHKG 20 (148)
T ss_pred eEEeEecceEEecCCCC
Confidence 48999999999987653
No 15
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=97.25 E-value=0.00012 Score=54.80 Aligned_cols=52 Identities=29% Similarity=0.543 Sum_probs=39.2
Q ss_pred ccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH------------------------------HHHHhhhhhhhh
Q psy3499 10 EGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK------------------------------EIMMDHALRTIS 59 (108)
Q Consensus 10 ~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik------------------------------e~mMdh~LrtIS 59 (108)
+||.|.++|||+|-. .|..+.+ | .++|+.++| ..+++|+|..||
T Consensus 11 ~gv~f~aKylG~~eV-~e~RG~~---v--~~~Ai~klk~~~k~~~~kk~kV~L~IS~dGi~v~D~~T~~ll~~~~i~rIS 84 (139)
T cd01215 11 NGVSYKAKLIGIQEV-DKARGDA---M--CAEAMRKAKSIIKGAGAHKTRITLQINIDGIKVLDEKTGAVLHHHPVHRIS 84 (139)
T ss_pred CcEEEEEEecccEec-ccCCchH---H--HHHHHHHHHHHhhhhccccceEEEEEccCCEEEEcCCCCcEEEeeceeeEE
Confidence 799999999999864 3322332 2 778888883 578899999999
Q ss_pred eee-eecce
Q psy3499 60 YIA-DIGDL 67 (108)
Q Consensus 60 YIA-DIG~i 67 (108)
|+| |--+.
T Consensus 85 fca~D~~d~ 93 (139)
T cd01215 85 FIARDSTDA 93 (139)
T ss_pred EEecCCCCC
Confidence 999 54443
No 16
>KOG3697|consensus
Probab=93.78 E-value=0.028 Score=47.59 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=35.4
Q ss_pred CccccccceeeeccccceeeeecCC-CCchhhhHHHHHHHHHH
Q psy3499 5 PSVLIEGVLFRARYLGSTQLVCEGQ-PTKSTRMMQAEEAVSRI 46 (108)
Q Consensus 5 pe~Li~GviF~a~ylGsTql~se~~-p~ks~rM~Qaqeav~ri 46 (108)
.|..-.||-|.++||||...+-.-+ =-+++|-+.++||+|++
T Consensus 10 d~v~~~GVs~~v~YlGcVeV~~Sm~~ldf~trtq~~re~is~v 52 (345)
T KOG3697|consen 10 DEVRGPGVSYSVTYLGCVEVLESMNVLDFNTRTQMTREAISRV 52 (345)
T ss_pred HhhccCCceEEEEEeeeehHHhhhhhhhhccHHHHHHHHHHHH
Confidence 3556689999999999999875544 56789999999999999
No 17
>cd01214 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain. CG8312 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=92.63 E-value=0.15 Score=38.12 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=18.7
Q ss_pred eeeccccceeeeecCCCCchhhhHHHHHHHHHH
Q psy3499 14 FRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRI 46 (108)
Q Consensus 14 F~a~ylGsTql~se~~p~ks~rM~Qaqeav~ri 46 (108)
|-.+|||+|.....+-. . -..+||.+|
T Consensus 4 y~VkYLG~~~t~~~~Ge--g----~t~~av~~I 30 (133)
T cd01214 4 YTVLYLGNVLTIQARGE--G----CTEKALGKI 30 (133)
T ss_pred EEEEEcccccccccCCC--c----cHHHHHHHH
Confidence 88899999998733221 1 346788887
No 18
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=78.80 E-value=0.83 Score=34.12 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=11.7
Q ss_pred eccccceeeeecCCC
Q psy3499 16 ARYLGSTQLVCEGQP 30 (108)
Q Consensus 16 a~ylGsTql~se~~p 30 (108)
-+|||+|++...++.
T Consensus 6 vtYLGct~V~aP~sE 20 (125)
T cd01211 6 VTYLGCSQLVNPDSE 20 (125)
T ss_pred cEEeeeEEecCCCCH
Confidence 589999999766543
No 19
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.18 E-value=5 Score=26.68 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHh
Q psy3499 36 MMQAEEAVSRIKEIMMD 52 (108)
Q Consensus 36 M~Qaqeav~rike~mMd 52 (108)
-.|.|+||+||++.|-+
T Consensus 10 HeqQQ~AVE~Iq~lMae 26 (60)
T COG3140 10 HEQQQKAVERIQELMAE 26 (60)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 37899999999998754
No 20
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=54.51 E-value=22 Score=25.39 Aligned_cols=64 Identities=19% Similarity=0.370 Sum_probs=39.2
Q ss_pred CCCCccccccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHHHH------HHhhhhhhhheeeeecce
Q psy3499 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKEI------MMDHALRTISYIADIGDL 67 (108)
Q Consensus 2 p~~pe~Li~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rike~------mMdh~LrtISYIADIG~i 67 (108)
|..+.....|++|.+==.|..- ..+........ .|++.++..++.. -+++.+++-.|++|+.+.
T Consensus 18 ~yS~av~~~~~vfvSGQi~~~~-~g~~v~~~d~~-~Q~~~~l~ni~a~L~~aG~~~~~Vvk~~v~l~d~~~f 87 (130)
T COG0251 18 PYSQAVVAGGLVFVSGQIPLDP-TGELVGGEDIE-AQTRQALANIKAVLEAAGSTLDDVVKVTVFLTDMNDF 87 (130)
T ss_pred CccceEEECCEEEEeCcCCcCC-CCcccCCCCHH-HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCchHH
Confidence 4455556667666653333322 12222222333 7888888888643 367899999999999874
No 21
>PRK05114 hypothetical protein; Provisional
Probab=52.53 E-value=14 Score=24.59 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy3499 35 RMMQAEEAVSRIKEIMM 51 (108)
Q Consensus 35 rM~Qaqeav~rike~mM 51 (108)
...|.|+||+||++-|-
T Consensus 9 tHeeQQ~AVErIq~LMa 25 (59)
T PRK05114 9 THEQQQKAVERIQELMA 25 (59)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34789999999997664
No 22
>cd01213 tensin Tensin Phosphotyrosine-binding (PTB) domain. Tensin Phosphotyrosine-binding (PTB) domain. Tensin is a a focal adhesion protein, which contains a C-terminal SH2 domain followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=51.16 E-value=54 Score=24.47 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.3
Q ss_pred ccccceeeeccccceeeeecCCC
Q psy3499 8 LIEGVLFRARYLGSTQLVCEGQP 30 (108)
Q Consensus 8 Li~GviF~a~ylGsTql~se~~p 30 (108)
|..|+-+-..||||.-.-+-..+
T Consensus 2 l~qgaa~nv~yLgS~evesltg~ 24 (138)
T cd01213 2 LAQGAACNVLYLGSVDTESLTGN 24 (138)
T ss_pred cccccccceeeeeeEeeccccCc
Confidence 56788888999999988777544
No 23
>KOG4458|consensus
Probab=50.22 E-value=7.4 Score=26.86 Aligned_cols=34 Identities=32% Similarity=0.707 Sum_probs=23.2
Q ss_pred ccccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH
Q psy3499 8 LIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK 47 (108)
Q Consensus 8 Li~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik 47 (108)
.-.|+-|.|+|.||..+ |-.++|. ..-.||.||+
T Consensus 30 ~qhgi~feakyvgsldi-----prp~sri-eivaamrrir 63 (78)
T KOG4458|consen 30 FQHGICFEAKYVGSLDI-----PRPGSRI-EIVAAMRRIR 63 (78)
T ss_pred hhccceEeeeeeeeecC-----CCCCCee-ehhHhhhhhe
Confidence 34699999999999865 5556663 2334666663
No 24
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=50.10 E-value=16 Score=23.61 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy3499 37 MQAEEAVSRIKEIMM 51 (108)
Q Consensus 37 ~Qaqeav~rike~mM 51 (108)
.|.|+||+||++-|-
T Consensus 11 eeQQ~AvE~Iq~LMa 25 (51)
T PF03701_consen 11 EEQQQAVERIQELMA 25 (51)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688999999997664
No 25
>KOG3536|consensus
Probab=44.23 E-value=5.5 Score=33.88 Aligned_cols=22 Identities=45% Similarity=0.830 Sum_probs=19.4
Q ss_pred CCCcccccc-ceeeeccccceee
Q psy3499 3 HEPSVLIEG-VLFRARYLGSTQL 24 (108)
Q Consensus 3 ~~pe~Li~G-viF~a~ylGsTql 24 (108)
+.+|-|++| |.|.++|||+|-.
T Consensus 37 ~t~e~l~~g~v~y~~kflg~~ev 59 (321)
T KOG3536|consen 37 HTRETLIEGHVPYSAKFLGMTEV 59 (321)
T ss_pred cchhhhhcccHHHHHHhcccccc
Confidence 468999999 9999999999853
No 26
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=40.06 E-value=51 Score=22.56 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeeccee
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDLV 68 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~iv 68 (108)
.|++.++..++..+ +++.+|..-|+.|+.+.-
T Consensus 48 ~Q~~~~~~ni~~~L~~aG~~~~dvv~~~vyv~~~~~~~ 85 (124)
T TIGR00004 48 EQAEQVLENLKAILEAAGLSLDDVVKTTVFLTDLNDFA 85 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeChHHHH
Confidence 78888888885433 578889999999887653
No 27
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=35.30 E-value=43 Score=30.48 Aligned_cols=49 Identities=24% Similarity=0.374 Sum_probs=35.3
Q ss_pred ccccceeeeecCCCCch-----------hhhHHHHHHHHHHHHHHHhhhhhhhheeeeecce
Q psy3499 17 RYLGSTQLVCEGQPTKS-----------TRMMQAEEAVSRIKEIMMDHALRTISYIADIGDL 67 (108)
Q Consensus 17 ~ylGsTql~se~~p~ks-----------~rM~Qaqeav~rike~mMdh~LrtISYIADIG~i 67 (108)
-+++||+|-...-|-+. ++++.-+|+...|..+|.| |+||+|.-||..-
T Consensus 439 dfirST~l~~~~~~cs~viEkL~yas~Ls~lq~vkeq~qvInq~mae--LatiPyLqD~sqq 498 (569)
T PF15015_consen 439 DFIRSTKLNGSFCACSGVIEKLQYASLLSQLQRVKEQSQVINQAMAE--LATIPYLQDISQQ 498 (569)
T ss_pred HHhhcccccCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCccccccchh
Confidence 36789998877666544 4556666676666677765 6799999999753
No 28
>KOG3537|consensus
Probab=31.34 E-value=50 Score=29.91 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=22.3
Q ss_pred eeeeccccceeeeecCCCCchhhhHHHHHHHHHHH
Q psy3499 13 LFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK 47 (108)
Q Consensus 13 iF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik 47 (108)
-|--+|||+..+--.+ =|.--++|+.++|
T Consensus 38 sF~VkYLG~VEV~ESR------GM~vCE~AlK~Lk 66 (543)
T KOG3537|consen 38 SFPVKYLGHVEVFESR------GMQVCEDALKVLK 66 (543)
T ss_pred eeeeeeeeeEEEeccc------CcHHHHHHHHHHH
Confidence 4899999998865332 3777889999885
No 29
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=26.13 E-value=43 Score=23.33 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHH------H-----Hhhhhhhhheeeeeccee
Q psy3499 37 MQAEEAVSRIKEI------M-----MDHALRTISYIADIGDLV 68 (108)
Q Consensus 37 ~Qaqeav~rike~------m-----Mdh~LrtISYIADIG~iv 68 (108)
.|++.+++.|++. - |+|.+|+--|+.|+.+.-
T Consensus 36 ~Q~~~~l~ni~~~L~~aG~~~~~~~~~dVvk~~vyl~d~~~~~ 78 (114)
T cd06153 36 AQTRETLENIEALLEAAGRGGGAQFLADLLRLKVYLRDREDLP 78 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccchhheeEEEEEEccHHHHH
Confidence 8888888888532 2 788899999999987653
No 30
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.63 E-value=1.2e+02 Score=20.77 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecceee
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDLVV 69 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~ivV 69 (108)
.|++.+++.++..+ +++.+|.--|+.|+.+.-.
T Consensus 44 ~Q~~~~~~ni~~~L~~aG~~~~dVvk~~vyl~d~~~~~~ 82 (119)
T cd06154 44 EQTRQCLEIIEAALAEAGASLEDVVRTRMYVTDIADFEA 82 (119)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHH
Confidence 88888888886443 6888899999998876644
No 31
>KOG4420|consensus
Probab=23.34 E-value=40 Score=28.78 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=42.8
Q ss_pred ccccceeeeecCCCCchhhhHHHHHHHHHHHHHHHhh------hhhhhheeeeecce
Q psy3499 17 RYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKEIMMDH------ALRTISYIADIGDL 67 (108)
Q Consensus 17 ~ylGsTql~se~~p~ks~rM~Qaqeav~rike~mMdh------~LrtISYIADIG~i 67 (108)
+++|---|.-|.++-.-.||.|-+|++++..-.-..| .|.|.|-|-|+|.|
T Consensus 101 tf~ger~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~i 157 (325)
T KOG4420|consen 101 TFTGERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEI 157 (325)
T ss_pred hhcccccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHH
Confidence 4566666899999999999999999999887555556 89999999999966
No 32
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.60 E-value=95 Score=20.72 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHH------HHhhhhhhhheeeeecceeeee
Q psy3499 33 STRMMQAEEAVSRIKEI------MMDHALRTISYIADIGDLVVLM 71 (108)
Q Consensus 33 s~rM~Qaqeav~rike~------mMdh~LrtISYIADIG~ivVlM 71 (108)
..+ .|+..+++.|++. -|+|.+++.-|+.|+.+.-.+.
T Consensus 23 d~~-~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n 66 (101)
T cd06155 23 TVE-EQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVN 66 (101)
T ss_pred CHH-HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHH
Confidence 444 7888888888643 3678999999999987664433
No 33
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=21.01 E-value=26 Score=21.11 Aligned_cols=11 Identities=45% Similarity=0.776 Sum_probs=8.1
Q ss_pred hhhhhheeeee
Q psy3499 54 ALRTISYIADI 64 (108)
Q Consensus 54 ~LrtISYIADI 64 (108)
.+++|.|+||-
T Consensus 39 ~~~~V~Y~Ad~ 49 (52)
T PF00379_consen 39 QTRTVTYVADE 49 (52)
T ss_pred CEEEEEEECCC
Confidence 45788888873
No 34
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.65 E-value=52 Score=24.82 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=10.7
Q ss_pred CCCeEEEeeeccCcc
Q psy3499 89 RTPKMICHVFESDEI 103 (108)
Q Consensus 89 ~~~kmiCHVf~sedA 103 (108)
.+..-+||||+.++.
T Consensus 97 ~~~~f~CyVFqc~Se 111 (129)
T cd01269 97 GLSQYICYVFQCADE 111 (129)
T ss_pred CcceEEEEEEEcCCH
Confidence 445789999994443
Done!