Query psy3499
Match_columns 108
No_of_seqs 65 out of 67
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 18:15:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3suz_A Amyloid beta A4 precurs 100.0 1.6E-32 5.6E-37 220.9 4.1 101 5-105 2-150 (388)
2 1aqc_A X11; PTB domain; 2.30A 99.9 2.1E-28 7.2E-33 180.8 5.1 100 6-105 2-148 (172)
3 4dbb_A Amyloid beta A4 precurs 99.9 6E-27 2.1E-31 171.4 3.6 91 4-104 1-119 (162)
4 2ela_A Adapter protein contain 99.7 1.3E-17 4.6E-22 123.7 3.1 90 1-104 18-142 (175)
5 2ej8_A DCC-interacting protein 99.6 2E-16 6.8E-21 114.9 3.5 87 4-104 8-129 (160)
6 1n3h_A SHC transforming protei 99.6 4.7E-16 1.6E-20 118.3 3.9 88 3-104 40-188 (207)
7 1ntv_A Disabled homolog 1; bet 99.4 1.1E-13 3.8E-18 99.7 1.3 81 3-104 4-126 (152)
8 3f0w_A NUMB-R, NUMB-like prote 99.4 1.3E-13 4.6E-18 100.5 1.6 80 4-102 33-142 (168)
9 1p3r_A Disabled homolog 2; PTB 99.2 3.6E-12 1.2E-16 92.6 2.5 82 2-104 2-125 (160)
10 3so6_A LDL receptor adaptor pr 99.2 5.4E-12 1.9E-16 87.2 3.1 75 9-102 1-108 (137)
11 1wgu_A APBB2, amyloid beta (A4 97.7 1.3E-05 4.4E-10 57.8 2.2 30 12-47 16-45 (136)
12 2ysz_A Amyloid beta A4 precurs 97.6 3.6E-05 1.2E-09 58.4 3.0 30 12-47 16-45 (185)
13 3dxe_A Amyloid beta A4 protein 97.4 4.1E-05 1.4E-09 55.5 1.4 29 13-47 9-37 (140)
14 2yt0_A Amyloid beta A4 protein 97.4 7.5E-05 2.6E-09 56.2 2.8 38 4-47 53-91 (176)
15 2dyq_A Amyloid beta A4 precurs 96.9 0.00046 1.6E-08 50.5 2.8 37 5-47 8-45 (144)
16 3d8d_A Amyloid beta A4 precurs 88.9 0.16 5.6E-06 37.4 1.7 25 12-36 3-28 (148)
17 3l7q_A Putative translation in 69.1 5.1 0.00018 27.0 3.6 63 1-67 14-84 (125)
18 3k0t_A Endoribonuclease L-PSP, 67.7 6.1 0.00021 27.6 3.9 62 2-67 34-102 (143)
19 3r0p_A L-PSP putative endoribo 65.8 7.3 0.00025 26.2 3.9 31 37-67 51-87 (127)
20 3lme_A Possible translation in 59.9 7.2 0.00025 26.8 3.0 32 36-67 49-86 (138)
21 3v4d_A Aminoacrylate peracid r 56.1 14 0.00048 25.1 4.0 31 37-67 56-92 (134)
22 3quw_A Protein MMF1; chorismat 50.4 19 0.00064 25.6 4.0 62 2-67 43-111 (153)
23 1gl2_A Endobrevin; membrane pr 49.8 13 0.00043 23.0 2.6 27 27-53 2-28 (65)
24 3gtz_A Putative translation in 46.2 16 0.00055 24.7 2.9 31 37-67 39-75 (124)
25 1qd9_A Purine regulatory prote 44.6 25 0.00087 23.4 3.7 31 37-67 47-83 (124)
26 3m1x_A Putative endoribonuclea 43.5 23 0.00079 24.7 3.5 62 2-67 39-108 (148)
27 1pf5_A Hypothetical protein YJ 42.5 32 0.0011 23.1 4.0 31 37-67 51-88 (131)
28 3kjj_A NMB1025 protein; YJGF p 39.8 24 0.00082 24.1 3.1 31 37-67 45-81 (128)
29 2cvl_A TTHA0137, protein trans 39.3 34 0.0012 22.7 3.7 31 37-67 47-83 (124)
30 3lyb_A Putative endoribonuclea 35.8 31 0.0011 24.6 3.2 31 37-67 71-107 (165)
31 3i7t_A RV2704, putative unchar 35.1 30 0.001 24.4 3.0 31 37-67 43-79 (149)
32 3i3f_A Hypothetical protein; s 34.8 41 0.0014 23.0 3.6 29 37-65 59-93 (141)
33 2dyy_A UPF0076 protein PH0854; 32.8 50 0.0017 21.9 3.7 31 37-67 49-85 (126)
34 3vcz_A Endoribonuclease L-PSP; 30.8 60 0.0021 22.7 4.0 32 36-67 71-108 (153)
35 1jd1_A Hypothetical 13.9 kDa p 30.5 63 0.0022 21.5 3.9 31 37-67 51-87 (129)
36 2b33_A Protein synthesis inhib 30.4 60 0.0021 22.4 3.9 31 37-67 61-97 (140)
37 1x25_A Hypothetical UPF0076 pr 30.2 50 0.0017 22.0 3.4 31 37-67 51-87 (128)
38 1l4a_A Synaptobrevin; snare, s 27.4 62 0.0021 20.5 3.3 26 28-53 9-34 (80)
39 2isb_A Fumarase, FUM-1; NP_069 25.2 67 0.0023 24.4 3.6 65 4-73 64-148 (192)
40 1xrg_A Putative translation in 23.5 95 0.0033 21.8 4.0 31 37-67 80-116 (156)
41 2cwj_A Putative endonuclease; 23.1 77 0.0026 20.9 3.3 31 37-67 43-79 (123)
42 2izx_A CAMP-dependent protein 22.2 8.1 0.00028 21.6 -1.6 15 4-21 22-36 (41)
43 3k12_A Uncharacterized protein 22.2 51 0.0017 22.0 2.2 31 37-67 37-73 (122)
No 1
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.97 E-value=1.6e-32 Score=220.87 Aligned_cols=101 Identities=59% Similarity=0.897 Sum_probs=88.6
Q ss_pred CccccccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH-------------------------------------
Q psy3499 5 PSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK------------------------------------- 47 (108)
Q Consensus 5 pe~Li~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik------------------------------------- 47 (108)
-|+|++||+|.++||||||+.|+|+|.+++||+|||||++||+
T Consensus 2 ~e~l~~gv~f~~kylG~~~v~s~~~~~~~~r~~~~~eai~rv~~~~k~~~~~~~~~~~~~~~~~~~v~l~IS~~gi~v~~ 81 (388)
T 3suz_A 2 SEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQTLTEVDLFISTQRIKVLN 81 (388)
T ss_dssp CHHHHHCEEEEEEEEEEEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCSSEEEEEEECSSEEEEEE
T ss_pred cccccCCcEEeeeEeeeeeccCCCCCCccchHHHHHHHHHHHHHHHhhccccccCCCcccccccceEEEEEEeceEEEEe
Confidence 4899999999999999999999999999999999999999994
Q ss_pred ----HHHHhhhhhhhheeeeecceeeeeeeeccCccCC-------CCCCCCCCCCeEEEeeeccCcccc
Q psy3499 48 ----EIMMDHALRTISYIADIGDLVVLMARRRFVSQEA-------DEPPKISRTPKMICHVFESDEIAS 105 (108)
Q Consensus 48 ----e~mMdh~LrtISYIADIG~ivVlMARR~~~~~~~-------~~~~~~~~~~kmiCHVf~sedAQ~ 105 (108)
++||+|+||+|||+||+++++++|||++..+..+ .....+++++||+||||+|++||.
T Consensus 82 ~~t~~~~~~~~l~~IS~~~d~~~~~~~iak~~~~~~~~~~~~~~~~~~~~~~~~~~~~ChvF~s~~a~~ 150 (388)
T 3suz_A 82 ADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQL 150 (388)
T ss_dssp TTTCCEEEEEEGGGEEEEEECSSEEEEEEEECCCCCC-------------CCCCEEEEEEEEECTTHHH
T ss_pred cCCcChhhhccccceeEEeecCceEEEEEecCCCccccccccccCccccccccccceEEEEecccCHHH
Confidence 5789999999999999999999999999776421 112367899999999999999874
No 2
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=99.95 E-value=2.1e-28 Score=180.84 Aligned_cols=100 Identities=60% Similarity=0.909 Sum_probs=80.7
Q ss_pred ccccccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH--------------------------------------
Q psy3499 6 SVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------------------------------- 47 (108)
Q Consensus 6 e~Li~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik-------------------------------------- 47 (108)
|+|++||.|.++|||||++.+++++.+++||+|++|||.||+
T Consensus 2 e~l~~Gv~f~vkYLGs~eV~~~~g~~~~~R~~~~~eAi~rl~~~~~~~~~r~k~~~g~~~~~~~V~L~IS~~gikv~d~~ 81 (172)
T 1aqc_A 2 EDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDLFILTQRIKVLNAD 81 (172)
T ss_dssp CCTTTCEEEEEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHCC--------------CEEEEEECSSEEEEEETT
T ss_pred ccccCCceEEEEeceEEEecCCCCCCcchhHHHHHHHHHHHHHHHHhhhccccccccccCCCcEEEEEEECCeEEEEeCC
Confidence 799999999999999999999999999999999999999983
Q ss_pred --HHHHhhhhhhhheeeeecceeeeeeeeccCccCCC-------CCCCCCCCCeEEEeeeccCcccc
Q psy3499 48 --EIMMDHALRTISYIADIGDLVVLMARRRFVSQEAD-------EPPKISRTPKMICHVFESDEIAS 105 (108)
Q Consensus 48 --e~mMdh~LrtISYIADIG~ivVlMARR~~~~~~~~-------~~~~~~~~~kmiCHVf~sedAQ~ 105 (108)
+++|+|+|++|||+||+++++.++||+...+..+. ++..+.+++++.||||++++||.
T Consensus 82 t~~il~~~~l~~ISf~aD~~~~FayIar~~~~~~~~~~n~~~~~~~~~~~~~~~~~CHVF~s~~A~~ 148 (172)
T 1aqc_A 82 TQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENVEASHPSQDGKRQYKMICHVFESEDAQL 148 (172)
T ss_dssp TCCEEEEEEGGGEEEEEEETTEEEEEECCC----------------------CEEEEEEEECTTHHH
T ss_pred CCceEeccccceEEEEeeCCcEEEEEecCCCccccccccccccccccccCCCCcEEEEEEECccHHH
Confidence 47889999999999999999999999987542211 12245567899999999999873
No 3
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=99.93 E-value=6e-27 Score=171.36 Aligned_cols=91 Identities=65% Similarity=1.018 Sum_probs=81.7
Q ss_pred CCccccccceeeeccccceeeeecCCCCchhhhHHHHHHHHHH----------------------------HHHHHhhhh
Q psy3499 4 EPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRI----------------------------KEIMMDHAL 55 (108)
Q Consensus 4 ~pe~Li~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~ri----------------------------ke~mMdh~L 55 (108)
|||+||+||+|.++||||+++.+.++|.+++||++++|||.|| |+.+|+|+|
T Consensus 1 ~pe~l~~Gv~F~vkYLGs~eV~s~r~~~~~~r~~~~~eAi~ri~~~~~~~~~~~V~L~IS~~gIkv~d~~t~~~i~~~~l 80 (162)
T 4dbb_A 1 DPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEVDLFISTQRIKVLNADTQEPMMDHPL 80 (162)
T ss_dssp --CCCCCEEEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHTCC-----CCCEEEEEEEESSEEEEEETTTCCEEEEEEG
T ss_pred CchhccCCcEEEeEEEeEEEEcCCCCCCcchhHHHHHHHHHHHHHhcCCCCCcEEEEEEECCEEEEEECCCCcEEeeeec
Confidence 7999999999999999999999999999999999999999998 268899999
Q ss_pred hhhheeeeecceeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCccc
Q psy3499 56 RTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEIA 104 (108)
Q Consensus 56 rtISYIADIG~ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sedAQ 104 (108)
+.|||++|+++++.++||+...+ ...++.||||++++||
T Consensus 81 ~~ISf~a~~~~~f~fIar~~~~~----------~~~~~~CHVF~~~~A~ 119 (162)
T 4dbb_A 81 RTISYIADIGNIVVLMARRRMPR----------SQYKMICHVFESEDAQ 119 (162)
T ss_dssp GGEEEEEEETTEEEEEEEECCST----------TCEEEEEEEEECTTHH
T ss_pred ceeEEEEECCCEEEEEeccCCCC----------CCCcEEEEEEECCCHH
Confidence 99999999999999999986432 2459999999999876
No 4
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Probab=99.67 E-value=1.3e-17 Score=123.66 Aligned_cols=90 Identities=22% Similarity=0.273 Sum_probs=65.4
Q ss_pred CCCCCccccccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH-------------------------------HH
Q psy3499 1 MPHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------------------------EI 49 (108)
Q Consensus 1 gp~~pe~Li~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik-------------------------------e~ 49 (108)
|+|+||+++.|+.|.++||||+++.+.+.+ ...+|||.+++ ++
T Consensus 18 ~~~~~~~~~~~~~f~vkYLGs~eV~~~~g~------~v~~eAi~~l~~~~~~~~~~~~~~V~L~VS~~gI~l~d~~tk~~ 91 (175)
T 2ela_A 18 GSHMTEDSILHQLFIVRFLGSMEVKSDDHP------DVVYETMRQILAARAIHNIFRMTESHLLVTCDCLKLIDPQTQVT 91 (175)
T ss_dssp -------CCCCEEEEEEEEEEEEECSCCST------HHHHHHHHHHHHHHHHTTCCCCEEEEEEECSSEEEEECTTTCCE
T ss_pred CCCCCccccccceEEEEcceEEEecCCCCH------HHHHHHHHHHHHhhcccccccCCEEEEEEECCeEEEEeCCCCcE
Confidence 689999999999999999999999987643 46788888883 46
Q ss_pred HHhhhhhhhheeeeecc---eeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccC-ccc
Q psy3499 50 MMDHALRTISYIADIGD---LVVLMARRRFVSQEADEPPKISRTPKMICHVFESD-EIA 104 (108)
Q Consensus 50 mMdh~LrtISYIADIG~---ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~se-dAQ 104 (108)
+++|+|++|||+|+..+ ++.++||+..++. ....++.||||+++ .||
T Consensus 92 i~~~~i~~ISfca~d~~d~r~FafIar~~~~~~--------~~~~~~~CHVF~~~~~A~ 142 (175)
T 2ela_A 92 RLTFPLPCVVLYATHQENKRLFGFVLRTSSGRS--------ESNLSSVCYIFESNNEGE 142 (175)
T ss_dssp EEEEEGGGEEEEEEETTEEEEEEEEEEEC---------------CEEEEEEEEESSCHH
T ss_pred EEEeecCEEEEEEeCCCCCcEEEEEEecCcccc--------CCCcceEEEEEEcchhHH
Confidence 88999999999998886 9999999863221 11248999999998 454
No 5
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=99.61 E-value=2e-16 Score=114.93 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=69.0
Q ss_pred CCccccccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH-------------------------------HHHHh
Q psy3499 4 EPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------------------------EIMMD 52 (108)
Q Consensus 4 ~pe~Li~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik-------------------------------e~mMd 52 (108)
+||+++.++.|.++||||+++.+.+.+ ...++||.+++ +++++
T Consensus 8 ~~~~~~~~~~f~vkYLGs~eV~~~~g~------~~~~~Ai~~l~~~~~~~~~~~~~~v~L~VS~~gi~l~d~~tk~~~~~ 81 (160)
T 2ej8_A 8 ETEDSILHQLFIVRFLGSMEVKSDDHP------DVVYETMRQILAARAIHNIFRMTESHLLVTCDCLKLIDPQTQVTRLT 81 (160)
T ss_dssp CCTTCSCEEEEEEEEEEEEEECCCSCT------HHHHHHHHHHHHHHHHTTCCCCCEEEEEEESSEEEEECTTTCCEEEE
T ss_pred CCcccccccEEEEEeeeEEEeCCCCCH------HHHHHHHHHHHHhhcccccCcCCEEEEEEECCeEEEEeCCCCeEEEE
Confidence 799999999999999999999987654 46788888873 45889
Q ss_pred hhhhhhheeeeecc---eeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccC-ccc
Q psy3499 53 HALRTISYIADIGD---LVVLMARRRFVSQEADEPPKISRTPKMICHVFESD-EIA 104 (108)
Q Consensus 53 h~LrtISYIADIG~---ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~se-dAQ 104 (108)
|+|++|||+|+..+ ++.++||+..++. ....++.||||+++ .||
T Consensus 82 ~~i~~ISfca~d~~~~r~FafIar~~~~~~--------~~~~~~~CHVF~~~~~A~ 129 (160)
T 2ej8_A 82 FPLPCVVLYATHQENKRLFGFVLRTSSGRS--------ESNLSSVCYIFESNNEGE 129 (160)
T ss_dssp EEGGGEEEEEEETTEEEEEEEEEEECC--------------CEEEEEEEEESSCHH
T ss_pred eeCCeEEEEEecCCCCeEEEEEEecCCccc--------CCCccEEEEEEEcchhHH
Confidence 99999999998886 8999999863221 11348999999998 444
No 6
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A*
Probab=99.59 E-value=4.7e-16 Score=118.28 Aligned_cols=88 Identities=25% Similarity=0.486 Sum_probs=71.1
Q ss_pred CCCcccc-ccceeeeccccceeeeec-CCCCchhhhHHHHHHHHHHHH--------------------------------
Q psy3499 3 HEPSVLI-EGVLFRARYLGSTQLVCE-GQPTKSTRMMQAEEAVSRIKE-------------------------------- 48 (108)
Q Consensus 3 ~~pe~Li-~GviF~a~ylGsTql~se-~~p~ks~rM~Qaqeav~rike-------------------------------- 48 (108)
|+||.|+ +||.|.++||||+++..+ +++.++.||.+++||+.||++
T Consensus 40 h~~~~l~~~gv~f~vkYLGs~eV~~~~r~~~~~~g~~v~~eAi~rv~~~~~~~k~~~~~kk~~~k~~~~~~g~~~~~~~~ 119 (207)
T 1n3h_A 40 HPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAG 119 (207)
T ss_dssp SCHHHHHTTCEEEEEEEECEEECCCCSSCSSSCCHHHHHHHHHHHHHHHSTTSCSSCCSCCCCCCSSSSCCCEEECSSCS
T ss_pred CChHHhccCCceEEEEecceEEeccccccCCccchHHHHHHHHHHHHHHhhcccchhhhcccccccchhccCCccccccC
Confidence 6888887 999999999999999965 889999999999999999863
Q ss_pred ---------------------HHHhhhhhhhheee----eecceeeeeeeeccCccCCCCCCCCCCCCeEEEeeec-cCc
Q psy3499 49 ---------------------IMMDHALRTISYIA----DIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFE-SDE 102 (108)
Q Consensus 49 ---------------------~mMdh~LrtISYIA----DIG~ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~-sed 102 (108)
.+|+|+|+.|||+| |..+++-.++|... .++.||||+ |++
T Consensus 120 ~~V~L~IS~~gIkv~d~~t~~~i~~~~i~~ISf~a~~d~~~~~~FafIar~~~--------------~~~~CHVF~cs~~ 185 (207)
T 1n3h_A 120 MPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPV--------------NQRACHILECPEG 185 (207)
T ss_dssp EEEEEEEETTEEEEEETTTTSCBCCCSCCCCSSSCSSSTTSSSCEEEEECCSS--------------SCCEEEEEECSSS
T ss_pred ceEEEEEECCeEEEEeCCCCceeeeeccceEEEEeccCCCcCCEEEEEecCCC--------------CCEEEEEEEcCHH
Confidence 36679999999999 44456666665431 367999998 553
Q ss_pred -cc
Q psy3499 103 -IA 104 (108)
Q Consensus 103 -AQ 104 (108)
||
T Consensus 186 ~A~ 188 (207)
T 1n3h_A 186 LAQ 188 (207)
T ss_dssp THH
T ss_pred HHH
Confidence 65
No 7
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Probab=99.36 E-value=1.1e-13 Score=99.70 Aligned_cols=81 Identities=20% Similarity=0.349 Sum_probs=61.7
Q ss_pred CCCccccc-----cceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH------------------------------
Q psy3499 3 HEPSVLIE-----GVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK------------------------------ 47 (108)
Q Consensus 3 ~~pe~Li~-----GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik------------------------------ 47 (108)
.+||.||+ ||.|.++||||+++...+ ++..++|||.+|+
T Consensus 4 ~~~~~L~~~~~g~gv~f~vkYLGs~eV~~~~------g~~v~~eA~~~i~~~~~~~k~~~~~~~~v~L~IS~~GI~v~d~ 77 (152)
T 1ntv_A 4 RSEATLIKRFKGEGVRYKAKLIGIDEVSAAR------GDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDE 77 (152)
T ss_dssp CCHHHHHHHHSTTCEEEEEEEEEEEECSSSC------CHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEEETTEEEEEET
T ss_pred CCHHHHHHhhcCCCcEEEEEeCCeEEecCCC------CchHHHHHHHHHHHHHhhhhccCCCCCEEEEEEECCeEEEEEC
Confidence 48999999 999999999999998764 5678999999995
Q ss_pred ---HHHHhhhhhhhheeee-ecc--eeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccC-ccc
Q psy3499 48 ---EIMMDHALRTISYIAD-IGD--LVVLMARRRFVSQEADEPPKISRTPKMICHVFESD-EIA 104 (108)
Q Consensus 48 ---e~mMdh~LrtISYIAD-IG~--ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~se-dAQ 104 (108)
+++|+|+|++|||+|+ ..| ++-..+|.. . .-.||||+|+ .||
T Consensus 78 ~tk~~~~~~~l~~ISf~a~d~~d~r~FafI~k~~--------------~-~h~f~v~~s~~~A~ 126 (152)
T 1ntv_A 78 KTGALQHHHAVHEISYIAKDITDHRAFGYVCGKE--------------G-NHRFVAIKTAQAAE 126 (152)
T ss_dssp TTCCEEEEECGGGEEEEEECTTCTTEEEEEESST--------------T-CCEEEEEEESSCSH
T ss_pred CCCceEeeeecCcEEEEeCCCCCCcEEEEEEEcC--------------C-eEEEEEEccHHHHH
Confidence 4588999999999995 444 233333310 0 2478999876 666
No 8
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=99.35 E-value=1.3e-13 Score=100.47 Aligned_cols=80 Identities=25% Similarity=0.488 Sum_probs=64.5
Q ss_pred CCccccccc-eeeeccccceeeeecCCCCchhhhHHHHHHHHHHH--------------------------HHHHhhhhh
Q psy3499 4 EPSVLIEGV-LFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK--------------------------EIMMDHALR 56 (108)
Q Consensus 4 ~pe~Li~Gv-iF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik--------------------------e~mMdh~Lr 56 (108)
+||.|++|+ .|.++||||+++... .++.+.++|+.++| +.+|+|+|+
T Consensus 33 ~~e~l~~g~~~f~vkYLGs~~V~~~------~g~~~~~~Ai~~lk~~~~k~~~V~L~VS~~GI~l~d~~t~~~l~~~~i~ 106 (168)
T 3f0w_A 33 DEDAVRKGTCSFPVRYLGHVEVEES------RGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIE 106 (168)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEESCS------CCHHHHHHHHHHHHTTC--CEEEEEEECSSEEEEEETTTCCEEEEEEGG
T ss_pred CHHHHhCCceEEEEEEeeEEEECCC------CCHHHHHHHHHHHHhcCCCCcEEEEEEECCEEEEEeCCCCeEEEeeecC
Confidence 689999998 799999999999774 37899999999994 578899999
Q ss_pred hhheeeeecc---eeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCc
Q psy3499 57 TISYIADIGD---LVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 102 (108)
Q Consensus 57 tISYIADIG~---ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sed 102 (108)
+|||+++.++ ++-+.+|.. ...++.||||.++.
T Consensus 107 ~ISf~~~d~~~~~~FafIar~~-------------~~~~~~CHvF~c~~ 142 (168)
T 3f0w_A 107 KVSFCAPDRNLDKAFSYICRDG-------------TTRRWICHCFLALK 142 (168)
T ss_dssp GEEEEEECSSCTTEEEEEEEET-------------TTTEEEEEEEEESS
T ss_pred cEEEEecCCCCCcEEEEEEecC-------------CCCcEEEEEEEecc
Confidence 9999997654 455555531 12489999999863
No 9
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=99.21 E-value=3.6e-12 Score=92.61 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=61.3
Q ss_pred CCCCccccc-----cceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH-----------------------------
Q psy3499 2 PHEPSVLIE-----GVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK----------------------------- 47 (108)
Q Consensus 2 p~~pe~Li~-----GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik----------------------------- 47 (108)
-+.||.|++ |+.|.++||||+++.+.+ .+..++|||.+|+
T Consensus 2 ~~~~~~ll~~~~~~gv~f~vkYLGs~~V~~~~------g~~~~~eA~~~i~~~~~~~k~~~~~~~~V~L~IS~~GI~v~d 75 (160)
T 1p3r_A 2 EKTDEYLLARFKGDGVKYKAKLIGIDDVPDAR------GDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKIID 75 (160)
T ss_dssp CCCHHHHHHHHSTTCEEEEEEEEEEEEESSSC------CHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEEETTEEEEEE
T ss_pred CCCHHHHHhhccCCCeEEEEEeceeEEecCCC------ChHHHHHHHHHHHHHHhhhhccCCCCCEEEEEEECCeEEEEE
Confidence 356788887 799999999999998764 3578999999995
Q ss_pred ----HHHHhhhhhhhheeeee-cc--eeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccC-ccc
Q psy3499 48 ----EIMMDHALRTISYIADI-GD--LVVLMARRRFVSQEADEPPKISRTPKMICHVFESD-EIA 104 (108)
Q Consensus 48 ----e~mMdh~LrtISYIADI-G~--ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~se-dAQ 104 (108)
+.+|+|+|++|||+|+. .| ++=..+|. . ....||||+|+ .||
T Consensus 76 ~~tk~~~~~~~l~~ISfca~d~~d~r~FafI~k~------~---------~~h~c~vf~s~~~A~ 125 (160)
T 1p3r_A 76 EKTGVIEHEHPVNKISFIARDVTDNRAFGYVCGG------E---------GQHQFFAIKTGQQAE 125 (160)
T ss_dssp TTTCCEEEEECGGGEEEEEECTTCTTEEEEEESS------T---------TCEEEEEEEESSCSH
T ss_pred CCCCeEEEecccCeEEEEecCCCCCcEEEEEEec------C---------CEEEEEEEccHHHHH
Confidence 45789999999999964 33 33333331 0 27889999985 565
No 10
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=99.20 E-value=5.4e-12 Score=87.18 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=58.5
Q ss_pred cccceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH------------------------------HHHHhhhhhhh
Q psy3499 9 IEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK------------------------------EIMMDHALRTI 58 (108)
Q Consensus 9 i~GviF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik------------------------------e~mMdh~LrtI 58 (108)
+|||.|.++||||+++.+.+ .|...++||.+++ +.+++|+|++|
T Consensus 1 ~~g~~f~v~YLGs~~v~~~~------g~~~~~~Av~~l~~~~k~~~~~~~~v~L~Vs~~gi~l~d~~~~~~~~~~~i~~I 74 (137)
T 3so6_A 1 MEGMVFSLKYLGMTLVERPK------GEELSAAAVKRIVATAKASGKKLQKVTLKVSPRGIILTDSLTSQLIENVSIYRI 74 (137)
T ss_dssp CCCEEEEEEEEEEEEESSSC------CHHHHHHHHHHHHHHHHHTCSCCEEEEEEEETTEEEEEETTTCCEEEEEEGGGE
T ss_pred CCccEEEEEEeeEEEecCCC------ChhHHHHHHHHHHHHhhccCCCCCEEEEEEeCCeEEEEECCCCcEEEeeccCEE
Confidence 68999999999999997653 6788999999983 46778999999
Q ss_pred heeeeec---ceeeeeeeeccCccCCCCCCCCCCCCeEEEeeeccCc
Q psy3499 59 SYIADIG---DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 102 (108)
Q Consensus 59 SYIADIG---~ivVlMARR~~~~~~~~~~~~~~~~~kmiCHVf~sed 102 (108)
||.+.-+ +++-+.+|.. ...++.||||..++
T Consensus 75 sf~~~d~~~~~~FafI~r~~-------------~~~~~~CHvF~c~~ 108 (137)
T 3so6_A 75 SYCTADKMHDKVFAYIAQSQ-------------QNESLECHAFLCTK 108 (137)
T ss_dssp EEEEECSSSTTEEEEEEECS-------------SSSCEEEEEEECSS
T ss_pred EEEEecCCCCCEEEEEEEcC-------------CCCeEEEEEEEeCC
Confidence 9988543 3555555542 12489999999874
No 11
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B
Probab=97.71 E-value=1.3e-05 Score=57.80 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=22.7
Q ss_pred ceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH
Q psy3499 12 VLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK 47 (108)
Q Consensus 12 viF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik 47 (108)
..|.++|||||+.-. ..-|.-..+|+.+|+
T Consensus 16 ~~f~vkyLGsv~V~~------p~G~dV~~~Ai~~i~ 45 (136)
T 1wgu_A 16 QKFRVQYLGMLPVDR------PVGMDTLNSAIENLM 45 (136)
T ss_dssp CCEEEEEEEEEECSC------SSCSHHHHHHHHHHH
T ss_pred eEEEEEecCcEEcCC------CCcHHHHHHHHHHHH
Confidence 469999999999832 223566788898884
No 12
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus}
Probab=97.57 E-value=3.6e-05 Score=58.39 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=23.4
Q ss_pred ceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH
Q psy3499 12 VLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK 47 (108)
Q Consensus 12 viF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik 47 (108)
..|.++|||||+.-. ..-|.-..+|+.+++
T Consensus 16 ~~F~vkYLGsv~V~~------p~G~dV~~~Ai~kl~ 45 (185)
T 2ysz_A 16 QKFRVQYLGMLPVDR------PVGMDTLNSAIENLM 45 (185)
T ss_dssp EEEEEEEEEEEEESS------SSCHHHHHHHHHHHH
T ss_pred eEEEEEecCcEEecC------CCcHHHHHHHHHHHH
Confidence 479999999999832 334677889999885
No 13
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A
Probab=97.40 E-value=4.1e-05 Score=55.53 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=21.6
Q ss_pred eeeeccccceeeeecCCCCchhhhHHHHHHHHHHH
Q psy3499 13 LFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK 47 (108)
Q Consensus 13 iF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik 47 (108)
-|.++|||||+..-.+ =|.--.+|+.+|+
T Consensus 9 ~F~vkYLGsv~V~~p~------G~~Vl~~Ai~ki~ 37 (140)
T 3dxe_A 9 KFQVYYLGNVPVAKPV------GVDVINGALESVL 37 (140)
T ss_dssp -CEEEEEEEEEESCSC------CHHHHHHHHHHHH
T ss_pred eEeeeecceEEECCCC------cHHHHHHHHHHHH
Confidence 4999999999985432 3556688999885
No 14
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A
Probab=97.40 E-value=7.5e-05 Score=56.25 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=27.2
Q ss_pred CCcccccc-ceeeeccccceeeeecCCCCchhhhHHHHHHHHHHH
Q psy3499 4 EPSVLIEG-VLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK 47 (108)
Q Consensus 4 ~pe~Li~G-viF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik 47 (108)
.|+.+-++ ..|.++|||||+.-.. .-|.--.+|+.+|+
T Consensus 53 ~p~~~~e~~~~F~vkYLGsv~V~~p------~G~dVl~~AI~kl~ 91 (176)
T 2yt0_A 53 GPTPKTELVQKFRVQYLGMLPVDRP------VGMDTLNSAIENLM 91 (176)
T ss_dssp CSCCCCSCCCEEEEEEEEEEECSCS------SCHHHHHHHHHHHH
T ss_pred CCccccccceEEEEEccCceEccCC------ccHHHHHHHHHHHH
Confidence 45555553 5799999999998432 34666788888885
No 15
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=96.92 E-value=0.00046 Score=50.54 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=21.7
Q ss_pred Cccccccc-eeeeccccceeeeecCCCCchhhhHHHHHHHHHHH
Q psy3499 5 PSVLIEGV-LFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK 47 (108)
Q Consensus 5 pe~Li~Gv-iF~a~ylGsTql~se~~p~ks~rM~Qaqeav~rik 47 (108)
|+.+-+++ -|.++||||++..-.+ . |.--.+|+.+++
T Consensus 8 ~~~~~~~~~~f~~kyLGsv~V~~~~----G--~dVln~Ai~~l~ 45 (144)
T 2dyq_A 8 LDAVSQAAQKYEALYMGTLPVTKAM----G--MDVLNEAIGTLT 45 (144)
T ss_dssp -------CCCCEEEEEEEEEESSSC----C--HHHHHHHHHHHH
T ss_pred HHHHHhhhhEEEEEEeccEEecCcc----C--HHHHHHHHHHHH
Confidence 34444443 4999999999986532 2 555668888773
No 16
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=88.86 E-value=0.16 Score=37.40 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=18.7
Q ss_pred ceeeeccccceeeeec-CCCCchhhh
Q psy3499 12 VLFRARYLGSTQLVCE-GQPTKSTRM 36 (108)
Q Consensus 12 viF~a~ylGsTql~se-~~p~ks~rM 36 (108)
.-|..+|||++-+--+ ..|.++.+-
T Consensus 3 ~~F~Vr~LG~vEv~e~~~~p~r~s~~ 28 (148)
T 3d8d_A 3 KCFAVRSLGWVEMTEEELAPGRSSVA 28 (148)
T ss_dssp EEEEEEEEEEEECCGGGGSTTTHHHH
T ss_pred eeEEeeecccEEEecccCCccccHHH
Confidence 3599999999998755 456677663
No 17
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=69.09 E-value=5.1 Score=26.96 Aligned_cols=63 Identities=24% Similarity=0.444 Sum_probs=38.4
Q ss_pred CCCCCccccccceeeeccccceeeee-cCCC-CchhhhHHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 1 MPHEPSVLIEGVLFRARYLGSTQLVC-EGQP-TKSTRMMQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 1 gp~~pe~Li~GviF~a~ylGsTql~s-e~~p-~ks~rM~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
||..+.....+.+|.+--+| +-. +++. ....+ .|++.++..++..+ +++.+|+--|+.|+.+.
T Consensus 14 g~ys~av~~g~~l~vSGq~~---~d~~~g~~~~~d~~-~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~ 84 (125)
T 3l7q_A 14 GPYVQGKIVGNLLFASGQVP---LSPETGQVIGTTIE-EQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDF 84 (125)
T ss_dssp SSCBSEEEETTEEEEEEECS---BCTTTCSBCCSSHH-HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESCGGGH
T ss_pred CCCCCEEEECCEEEEeccCC---cCCCCCCCCCcCHH-HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHH
Confidence 34455556666777653332 111 1111 22333 88888888886433 67888999999998874
No 18
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=67.68 E-value=6.1 Score=27.64 Aligned_cols=62 Identities=10% Similarity=0.238 Sum_probs=37.4
Q ss_pred CCCCccccccceeeeccccceeeeec-CCCCchhhhHHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 2 PHEPSVLIEGVLFRARYLGSTQLVCE-GQPTKSTRMMQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 2 p~~pe~Li~GviF~a~ylGsTql~se-~~p~ks~rM~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
|..+.....+.+|.+--+| +-.+ +.-..... .|++.++..++..+ +++.+|+--|+.|+.+.
T Consensus 34 ~YS~av~~g~~lfvSGq~~---~d~~~g~~~~d~~-~Qt~~~l~ni~aiL~~aG~~l~~Vvk~tvyl~d~~df 102 (143)
T 3k0t_A 34 PYSQAIKAGNTVYMSGQIP---LDPSTMELVEGIE-AQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHF 102 (143)
T ss_dssp SCCSEEEETTEEEEEEECS---BCTTTCSBCSSHH-HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred CcCcEEEECCEEEEeeeCC---cCCCCCcCCcCHH-HHHHHHHHHHHHHHHHhCCChHHEEEEEEEEcChHHH
Confidence 4444555556666553222 2111 11111333 78999998886544 67889999999998874
No 19
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=65.79 E-value=7.3 Score=26.17 Aligned_cols=31 Identities=13% Similarity=0.453 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+--|+.|+.+.
T Consensus 51 ~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~ 87 (127)
T 3r0p_A 51 VQAHQVFKNLRAVCEAAGGGLRDIVKLNVYLTDLANF 87 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHEEEEEEEEcCHHHH
Confidence 78999998886544 67888999999998764
No 20
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0
Probab=59.88 E-value=7.2 Score=26.84 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 36 MMQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 36 M~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
..|++.++..++..+ +++.+|+--|+.|+.+.
T Consensus 49 ~~Q~~~~l~ni~~~L~~aG~~l~~Vvk~~vyl~d~~d~ 86 (138)
T 3lme_A 49 EARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKY 86 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEECCHHHH
Confidence 489999999997554 67889999999998875
No 21
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=56.10 E-value=14 Score=25.08 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+--|+.|+.+.
T Consensus 56 ~Q~~~~l~nl~~~L~~aG~~l~~vvk~~vyl~d~~~f 92 (134)
T 3v4d_A 56 AQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNY 92 (134)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHeEEEEEEECCHHHH
Confidence 78888888886433 57888999999998764
No 22
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=50.37 E-value=19 Score=25.58 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=36.5
Q ss_pred CCCCccccccceeeeccccceeeeecCCC-CchhhhHHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQP-TKSTRMMQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 2 p~~pe~Li~GviF~a~ylGsTql~se~~p-~ks~rM~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
|..+.....+.+|.+--+| +-.++.. .... -.|++.++..++..+ +++.+|+--|+.|+.+.
T Consensus 43 ~YS~av~~g~~lfvSGq~~---~d~~g~~~~gdi-~~Qt~~~l~Ni~a~L~~aG~~l~dVVkvtvyl~d~~df 111 (153)
T 3quw_A 43 SYSQAMKANNFVYVSGQIP---YTPDNKPVQGSI-SEKAEQVFQNVKNILAESNSSLDNIVKVNVFLADMKNF 111 (153)
T ss_dssp TCCSEEEETTEEEEEEECS---BCTTSCBCCSCH-HHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred CcCCEEEECCEEEEeeeCC---cCCCCCCcCCCH-HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHH
Confidence 3344445556666553222 2222221 1123 378999998886433 56788999999998764
No 23
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=49.81 E-value=13 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=17.1
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhh
Q psy3499 27 EGQPTKSTRMMQAEEAVSRIKEIMMDH 53 (108)
Q Consensus 27 e~~p~ks~rM~Qaqeav~rike~mMdh 53 (108)
.++|...-++.+.|.-++-|+.+|++.
T Consensus 2 ~~~~~~~d~l~~vq~~l~evk~iM~~N 28 (65)
T 1gl2_A 2 SHMSAGNDRVRNLQSEVEGVKNIMTQN 28 (65)
T ss_dssp --------CHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999999999998764
No 24
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=46.24 E-value=16 Score=24.68 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|.--|+.|+.+.
T Consensus 39 ~Q~~~~l~nl~~~L~~aG~~~~~Vvk~tvyl~d~~df 75 (124)
T 3gtz_A 39 EQTANTLAQIDAVLEKQGSSKSRILDATIFLSDKADF 75 (124)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHH
Confidence 78888888886433 56888999999998764
No 25
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=44.56 E-value=25 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHH------HHhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEI------MMDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~------mMdh~LrtISYIADIG~i 67 (108)
.|++.++..++.. -+++.+|+.-|+.|+.+.
T Consensus 47 ~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~ 83 (124)
T 1qd9_A 47 EQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQF 83 (124)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHH
Confidence 7888888887533 357888999999998764
No 26
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=43.53 E-value=23 Score=24.74 Aligned_cols=62 Identities=23% Similarity=0.470 Sum_probs=36.9
Q ss_pred CCCCccccccceeeeccccceeeee-cCC-CCchhhhHHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 2 PHEPSVLIEGVLFRARYLGSTQLVC-EGQ-PTKSTRMMQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 2 p~~pe~Li~GviF~a~ylGsTql~s-e~~-p~ks~rM~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
|..+.....+.+|.+--+| +.. ..+ +....+ .|++.++..++..+ +++.+|+.-|+.|+.+.
T Consensus 39 ~YS~av~~g~~lfvSGq~~---~d~~~G~~~~~d~~-~Q~~~~l~nl~aiL~~aG~~l~~Vvk~tvyl~d~~df 108 (148)
T 3m1x_A 39 AYSQAIICNGXVYCSGQIG---LDRKTGDFAGKTIE-EQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDF 108 (148)
T ss_dssp SCCSEEEETTEEEEEEEES---EETTTTEESCSSHH-HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred CCCcEEEECCEEEEEeeCC---cCCCCCcCCCCCHH-HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHH
Confidence 4445555666676653222 211 111 112333 78888888886433 57888999999998764
No 27
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=42.49 E-value=32 Score=23.07 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeee-cce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADI-GDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADI-G~i 67 (108)
.|++.++..++..+ +++.+|+.-|+.|+ .+.
T Consensus 51 ~Q~~~~l~ni~~~L~~aG~~~~~vvk~~vyl~d~~~~~ 88 (131)
T 1pf5_A 51 QQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPENQF 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESSGGGTH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCcHHhH
Confidence 78888888886443 56888999999998 543
No 28
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=39.76 E-value=24 Score=24.07 Aligned_cols=31 Identities=26% Similarity=0.569 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+--|+.|+.+.
T Consensus 45 ~Q~~~~l~nl~~~L~~aG~~l~~Vvk~tvyl~d~~df 81 (128)
T 3kjj_A 45 EQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDMGDY 81 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHH
Confidence 78888888886433 56788999999998764
No 29
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=39.28 E-value=34 Score=22.72 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHH------HHhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEI------MMDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~------mMdh~LrtISYIADIG~i 67 (108)
.|++.++..++.. -+++.+|+.-|+.|+.+.
T Consensus 47 ~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~ 83 (124)
T 2cvl_A 47 VQTERVMENLKAVLEAAGSGLSRVVQTTCFLADMEDF 83 (124)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHH
Confidence 7888888887532 356888999999998764
No 30
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=35.83 E-value=31 Score=24.61 Aligned_cols=31 Identities=13% Similarity=0.373 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+.-|+.|+.+.
T Consensus 71 ~Qt~~~l~Ni~aiL~~aG~~l~~Vvkvtvyl~d~~df 107 (165)
T 3lyb_A 71 AQSWYVLESIRRTVASAGGQMSDVIKLVQYFRNLDHF 107 (165)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHhcCChhHhEEEEEEECCHHHh
Confidence 78999998887554 67888999999998764
No 31
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=35.05 E-value=30 Score=24.42 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+.-|+.|+.+.
T Consensus 43 ~Qt~~~l~ni~aiL~~aG~~l~dVvk~tvyl~d~~df 79 (149)
T 3i7t_A 43 AQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRW 79 (149)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHccCCHhHEEEEEEEECCHHHH
Confidence 78888888886443 56888999999998764
No 32
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia}
Probab=34.76 E-value=41 Score=22.97 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeec
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIG 65 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG 65 (108)
.|++.++..++..+ +++.+|+--|++|+.
T Consensus 59 ~Q~~~~l~nl~~~L~~aG~~~~~Vvk~~vyl~d~~ 93 (141)
T 3i3f_A 59 EQTRQTFDNIRKCLEYANSGLDYIVSLNIFLSTSL 93 (141)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCCc
Confidence 78888888886433 578889999999988
No 33
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=32.79 E-value=50 Score=21.90 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+.-|+.|+.+.
T Consensus 49 ~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~ 85 (126)
T 2dyy_A 49 DQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDF 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECC-CCT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHH
Confidence 78888888885332 56888999999998764
No 34
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=30.85 E-value=60 Score=22.74 Aligned_cols=32 Identities=16% Similarity=0.485 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 36 MMQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 36 M~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
-.|++.++..++..+ +++.+|+--|+.|+.+.
T Consensus 71 ~~Qt~~~l~nl~a~L~~aG~~l~~Vvk~tvyl~d~~df 108 (153)
T 3vcz_A 71 AAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDF 108 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHH
Confidence 388999988886443 56788899999988764
No 35
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=30.49 E-value=63 Score=21.54 Aligned_cols=31 Identities=26% Similarity=0.579 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+.-|+.|+.+.
T Consensus 51 ~Q~~~~l~ni~~~L~~aG~~~~~vvk~~vyl~d~~d~ 87 (129)
T 1jd1_A 51 DKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHF 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEcChHHH
Confidence 88888888886433 46788888999987654
No 36
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=30.45 E-value=60 Score=22.36 Aligned_cols=31 Identities=10% Similarity=0.360 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+.-|+.|+.+.
T Consensus 61 ~Qt~~~l~ni~~~L~~aG~~l~~Vvk~tvyl~d~~df 97 (140)
T 2b33_A 61 EKTERVLENLKAILEAGGFSLKDVVKVTVFTTSMDYF 97 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCchhH
Confidence 78888888885432 57888999999998654
No 37
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=30.22 E-value=50 Score=22.04 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+.-|+.|+.+.
T Consensus 51 ~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~ 87 (128)
T 1x25_A 51 VQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMF 87 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHEEEEEEEECCHHHH
Confidence 78888888885332 57888999999998764
No 38
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=27.36 E-value=62 Score=20.50 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHhh
Q psy3499 28 GQPTKSTRMMQAEEAVSRIKEIMMDH 53 (108)
Q Consensus 28 ~~p~ks~rM~Qaqeav~rike~mMdh 53 (108)
.+|...-++.+.|.-++-|+.+|.+.
T Consensus 9 ~~~~~~d~l~~vq~el~ev~~iM~~N 34 (80)
T 1l4a_A 9 QPVQQSKRLQQTQAQVEEVVDIMRVN 34 (80)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHH
Confidence 47888889999999999999988864
No 39
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=25.16 E-value=67 Score=24.41 Aligned_cols=65 Identities=26% Similarity=0.323 Sum_probs=41.1
Q ss_pred CCccccccceeeeccc----cceeeeecCCCCchhhhHHHHHH-HHHH---------------HHHHHhhhhhhhheeee
Q psy3499 4 EPSVLIEGVLFRARYL----GSTQLVCEGQPTKSTRMMQAEEA-VSRI---------------KEIMMDHALRTISYIAD 63 (108)
Q Consensus 4 ~pe~Li~GviF~a~yl----GsTql~se~~p~ks~rM~Qaqea-v~ri---------------ke~mMdh~LrtISYIAD 63 (108)
=|-||-.++||-+-=. |.-.+.| -.||+|.||--=.+. ++.. .+.+-+| --|.+-
T Consensus 64 lP~dl~g~~Iyy~GP~~~k~~~~~igs-~GPTTS~RMd~y~~~ll~~~G~~~mIGKG~r~~~v~~a~k~~----avYl~a 138 (192)
T 2isb_A 64 LPFSFDKGVVYHCGPLVKKNDEWRVVS-AGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRGK----AAYFAF 138 (192)
T ss_dssp CSSCCTTCEEECBCCEEEESSSEEEEE-CCBCBGGGGTTTHHHHHHHCSCEEEEEBSCCCHHHHHHHTTT----EEEEEE
T ss_pred CCcCCCCCEEEEecCCCCCCCCcEeeE-ECCCchhhhhhhHHHHHHhCCcEEEEECCCCCHHHHHHHHhC----eEEEEc
Confidence 4788889999843222 3223334 459999999544433 3331 2444444 369999
Q ss_pred ecceeeeeee
Q psy3499 64 IGDLVVLMAR 73 (108)
Q Consensus 64 IG~ivVlMAR 73 (108)
||....|.|+
T Consensus 139 vGGaaalla~ 148 (192)
T 2isb_A 139 TGGAGALAAM 148 (192)
T ss_dssp CSCSSTTGGG
T ss_pred CcHHHHHHHh
Confidence 9888888883
No 40
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=23.49 E-value=95 Score=21.80 Aligned_cols=31 Identities=19% Similarity=0.547 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+.-|+.|+.+.
T Consensus 80 ~Qt~~~l~ni~~iL~~aG~~l~~Vvk~tvyl~d~~df 116 (156)
T 1xrg_A 80 EQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDMDSF 116 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHEEEEEEEECChHHH
Confidence 78888888885332 56888999999998664
No 41
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=23.14 E-value=77 Score=20.86 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+.-|+.|+.+.
T Consensus 43 ~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~df 79 (123)
T 2cwj_A 43 ESAKRALDNLKAIVEGAGYSMDDIVKVTVYITDISRF 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHTSCCGGGCCEEEEEESSSSHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEcCHHHH
Confidence 78888888875332 57888999999998764
No 42
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=22.19 E-value=8.1 Score=21.63 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=12.3
Q ss_pred CCccccccceeeeccccc
Q psy3499 4 EPSVLIEGVLFRARYLGS 21 (108)
Q Consensus 4 ~pe~Li~GviF~a~ylGs 21 (108)
.|+|++. |.++|+.+
T Consensus 22 qP~di~~---f~a~yF~~ 36 (41)
T 2izx_A 22 QPPDLVE---FAVEYFTR 36 (41)
T ss_dssp CCSCHHH---HHHHHHHH
T ss_pred CCCCHHH---HHHHHHHH
Confidence 5888887 99999874
No 43
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=22.16 E-value=51 Score=21.99 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHH------Hhhhhhhhheeeeecce
Q psy3499 37 MQAEEAVSRIKEIM------MDHALRTISYIADIGDL 67 (108)
Q Consensus 37 ~Qaqeav~rike~m------Mdh~LrtISYIADIG~i 67 (108)
.|++.++..++..+ +++.+|+--|+.|+.+.
T Consensus 37 ~Q~~~~l~ni~~~L~~aG~~~~~Vvk~tvyl~d~~df 73 (122)
T 3k12_A 37 DQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDY 73 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHH
Confidence 78888888886433 56888999999998874
Done!