RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3499
(108 letters)
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 90.5 bits (224), Expect = 4e-25
Identities = 61/142 (42%), Positives = 76/142 (53%), Gaps = 47/142 (33%)
Query: 8 LIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRI--------------------- 46
LI+G++F A YLGSTQL+ + P+K+ RMMQA+EAVSRI
Sbjct: 4 LIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPM 63
Query: 47 -------------------KEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKI 87
+E MMDH LRTISYIADIG++VVLMARRR + E +
Sbjct: 64 TEVDLFILTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENVEA 123
Query: 88 S-------RTPKMICHVFESDE 102
S R KMICHVFES++
Sbjct: 124 SHPSQDGKRQYKMICHVFESED 145
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 191
Score = 66.6 bits (162), Expect = 1e-15
Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 65/155 (41%)
Query: 3 HEPSVLI-EGVLFRARYLGSTQLVCEGQ-PTKSTRMMQAEEAVSRIKE------------ 48
H ++ GV + RY+G +++ + +TR EA+S + E
Sbjct: 24 HPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRR 83
Query: 49 -----------------------------------------IMMDHALRTISYIADIGDL 67
I+ +H +++IS+ +
Sbjct: 84 KPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGD-- 141
Query: 68 VVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 102
+V+ A +P + CH+ E E
Sbjct: 142 ---PDTAEYVAYVAKDP-----VNQRACHILECPE 168
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
Length = 156
Score = 50.8 bits (121), Expect = 6e-10
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 42/126 (33%)
Query: 3 HEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK--------------- 47
E V F +YLG ++ +S M E+AV R+K
Sbjct: 17 DEEGVRTGKCSFPVKYLGHVEV------DESRGMHICEDAVKRLKATGKKAVKAVLWVSA 70
Query: 48 -----------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICH 96
++++D + +S+ A + + ++ ++ T + ICH
Sbjct: 71 DGLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFS---YICRD-------GTTRRWICH 120
Query: 97 VFESDE 102
F + +
Sbjct: 121 CFMAVK 126
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 135
Score = 46.5 bits (110), Expect = 2e-08
Identities = 16/127 (12%), Positives = 40/127 (31%), Gaps = 43/127 (33%)
Query: 3 HEPSVLIEG-VLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK-------------- 47
+ + F +YLG ++ +S M EEA+ ++
Sbjct: 5 ADEEAVRSATCSFSVKYLGCVEV------FESRGMQVCEEALKVLRQSRRRPVRGLLHVS 58
Query: 48 ------------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMIC 95
+++D + +S+ A + + ++ + T + +C
Sbjct: 59 GDGLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFS---YIC-------RDGTTRRWMC 108
Query: 96 HVFESDE 102
H F + +
Sbjct: 109 HGFLACK 115
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding
family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 136
Score = 41.6 bits (97), Expect = 1e-06
Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 49/134 (36%)
Query: 2 PHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRI--------------- 46
P + L++ FR +YLG + + M A+ +
Sbjct: 8 PTPKTELVQK--FRVQYLGMLPV------DRPVGMDTLNSAIENLMTSSSKEDWPSVNMN 59
Query: 47 --------------KEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPK 92
+E++++ +R +S++ D+ + +
Sbjct: 60 VADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMD------------TGNQR 107
Query: 93 MICHVFESDEIASA 106
CHVF + A+
Sbjct: 108 FECHVFWCEPNAAN 121
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 148
Score = 41.5 bits (97), Expect = 2e-06
Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 51/131 (38%)
Query: 7 VLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKE------------------ 48
+GV ++A+ +G + + +++++ ++K
Sbjct: 12 FKGDGVKYKAKLIGIDDV------PDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVN 65
Query: 49 ---------------IMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKM 93
I +H + IS+IA +V +
Sbjct: 66 ISLSGIKIIDEKTGVIEHEHPVNKISFIARDVTDNRAFG---YVCGGEG---------QH 113
Query: 94 ICHVFESDEIA 104
++ + A
Sbjct: 114 QFFAIKTGQQA 124
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 152
Score = 40.8 bits (95), Expect = 4e-06
Identities = 12/121 (9%), Positives = 41/121 (33%), Gaps = 27/121 (22%)
Query: 7 VLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKEIM---------MDHALRT 57
EGV ++A+ +G ++ + + ++++ ++K ++ T
Sbjct: 13 FKGEGVRYKAKLIGIDEV------SAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLT 66
Query: 58 ISY----IADIGDLVVL----MARRRFVSQEADEP----PKISRTPKMICHVFESDEIAS 105
IS+ I D + + +++++ + + ++ + A
Sbjct: 67 ISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAE 126
Query: 106 A 106
Sbjct: 127 P 127
>d2cy5a1 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 129
Score = 35.4 bits (81), Expect = 3e-04
Identities = 12/125 (9%), Positives = 28/125 (22%), Gaps = 43/125 (34%)
Query: 10 EGVLFRARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIK---------------------- 47
+ + +L + L + + E+A ++
Sbjct: 2 DVSQYHVNHLVTFCL------GEEDGVHTVEDASRKLAVMDSQGRVWAQEMLLRVSPSQV 55
Query: 48 --------EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFE 99
E + + L I + + V QE + H F+
Sbjct: 56 TLLDPVSKEELESYPLDAIVRCDAVMPRGRSRSLLLLVCQE-------PERAQPDVHFFQ 108
Query: 100 SDEIA 104
+
Sbjct: 109 GLLLG 113
>d2dkqa1 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [TaxId:
9606]}
Length = 147
Score = 34.2 bits (78), Expect = 0.001
Identities = 18/129 (13%), Positives = 30/129 (23%), Gaps = 38/129 (29%)
Query: 1 MPHEPSVLIEGVLFRARYLGSTQLVCEGQPTKSTRMMQA-EEAVSRIKE----------- 48
M +L +G YL S T+S QA A S
Sbjct: 1 MSTAADLLRQGAACSVLYLTSV-------ETESLTGPQAVARASSAALSCSPRPTPAVVH 53
Query: 49 ------------------IMMDHALRTISYIADIG-DLVVLMARRRFVSQEADEPPKISR 89
+ + +I++ + D K
Sbjct: 54 FKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGS 113
Query: 90 TPKMICHVF 98
+ +CH+F
Sbjct: 114 PWENVCHLF 122
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 279
Score = 24.7 bits (53), Expect = 2.5
Identities = 7/70 (10%), Positives = 18/70 (25%)
Query: 38 QAEEAVSRIKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHV 97
Q + + ++ I + GD R + +S + +
Sbjct: 91 QVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGS 150
Query: 98 FESDEIASAP 107
++ A
Sbjct: 151 MWFAPVSEAR 160
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 23.2 bits (49), Expect = 9.6
Identities = 12/75 (16%), Positives = 19/75 (25%)
Query: 16 ARYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKEIMMDHALRTISYIADIGDLVVLMARRR 75
G +++ + A I D + + A V R
Sbjct: 146 TIMYGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAAR 205
Query: 76 FVSQEADEPPKISRT 90
+S D P SR
Sbjct: 206 ALSTRNDNPQAASRP 220
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.378
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 383,808
Number of extensions: 15099
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 20
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)