BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy35
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O46339|HTH_DROME Homeobox protein homothorax OS=Drosophila melanogaster GN=hth PE=1
           SV=1
          Length = 487

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 40/46 (86%), Gaps = 4/46 (8%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDV 45
           MPIDLVIDERD+TKP PEL G+ NG +GRSNADS SH DGASTPDV
Sbjct: 200 MPIDLVIDERDTTKP-PEL-GSANG-EGRSNADSTSHTDGASTPDV 242


>sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens
            GN=VPS13B PE=1 SV=2
          Length = 4022

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 9    ERDSTKPLPELGGTTNGNDGRSNADSASHDGAS----TPDVGCLPVHLSLWLVWLMGFPL 64
            +  +  P  ++G TT G+  ++  +S   D  +    T ++G     +SLW+ W++  P 
Sbjct: 1275 DTSTCSPSADIGTTTEGDSIQAGEESPFSDSVTLEQTTSNIGGTSGRVSLWMQWVL--PK 1332

Query: 65   ITAKL 69
            IT KL
Sbjct: 1333 ITIKL 1337


>sp|A8WL06|UNC62_CAEBR Homeobox protein unc-62 OS=Caenorhabditis briggsae GN=unc-62 PE=3
           SV=2
          Length = 725

 Score = 30.4 bits (67), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASHDGASTP 43
           MP+D+V DER S+   P   G+  G+ G S + S    GA+TP
Sbjct: 208 MPLDIVGDERASSSQPPMSPGSM-GHHGHSGSPSMGGAGAATP 249


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,539,739
Number of Sequences: 539616
Number of extensions: 1140343
Number of successful extensions: 2609
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2605
Number of HSP's gapped (non-prelim): 11
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)