Query psy35
Match_columns 69
No_of_seqs 20 out of 22
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 18:16:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy35.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/35hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3avx_A Elongation factor TS, e 32.5 9.1 0.00031 33.4 -0.1 22 40-61 964-985 (1289)
2 2xw6_A MGS, methylglyoxal synt 14.6 84 0.0029 20.3 1.8 9 3-11 75-83 (134)
3 2bgw_A XPF endonuclease; hydro 13.4 90 0.0031 20.1 1.7 14 2-15 8-21 (219)
4 3uwl_A TS, tsase, thymidylate 10.8 60 0.002 23.8 0.2 9 60-68 41-49 (315)
5 2g49_C Glucagon preproprotein; 10.1 67 0.0023 16.6 0.2 24 38-61 3-28 (29)
6 2nr1_A NR1 M2, M2; receptor, s 9.9 1.3E+02 0.0044 15.6 1.3 10 51-60 10-19 (27)
7 1j23_A HEF nuclease, ATP-depen 9.2 1.2E+02 0.004 19.1 1.1 13 2-14 4-16 (143)
8 1vmd_A MGS, methylglyoxal synt 9.0 1.7E+02 0.0057 20.1 1.9 9 3-11 99-107 (178)
9 2ost_A Putative endonuclease; 8.6 1.2E+02 0.0039 20.8 1.0 7 2-8 35-41 (151)
10 2rpq_B Activating transcriptio 8.5 1.1E+02 0.0037 17.8 0.7 12 2-13 34-45 (49)
No 1
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=32.50 E-value=9.1 Score=33.40 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=19.0
Q ss_pred CCCCCccCCchhHHHHHHHHhc
Q psy35 40 ASTPDVGCLPVHLSLWLVWLMG 61 (69)
Q Consensus 40 asTPDv~~~~~~ls~~~~~~~~ 61 (69)
--|=|..+.|.++|+||||+.-
T Consensus 964 ~~t~dls~asd~~s~~l~~~~l 985 (1289)
T 3avx_A 964 LATVDLSAASDSISLALCELLL 985 (1289)
T ss_dssp EEEECBTTGGGGCBHHHHHTTS
T ss_pred eeEEEccccccHhHHHHHHHHc
Confidence 3578999999999999999864
No 2
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=14.60 E-value=84 Score=20.28 Aligned_cols=9 Identities=56% Similarity=0.268 Sum_probs=8.2
Q ss_pred cceeeecCC
Q psy35 3 IDLVIDERD 11 (69)
Q Consensus 3 IDLVIDERd 11 (69)
|||||.-++
T Consensus 75 IdlVInt~~ 83 (134)
T 2xw6_A 75 ILAVIFFRD 83 (134)
T ss_dssp EEEEEEECC
T ss_pred ccEEEEccC
Confidence 799999988
No 3
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=13.41 E-value=90 Score=20.07 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=7.8
Q ss_pred CcceeeecCCCCCC
Q psy35 2 PIDLVIDERDSTKP 15 (69)
Q Consensus 2 PIDLVIDERd~~kp 15 (69)
++-+|||.||-.++
T Consensus 8 ~~~iivD~RE~~s~ 21 (219)
T 2bgw_A 8 RPRVYVDVREERSP 21 (219)
T ss_dssp SCEEEEETTTTTSS
T ss_pred CeEEEEECCCcccH
Confidence 34566666665443
No 4
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=10.76 E-value=60 Score=23.79 Aligned_cols=9 Identities=67% Similarity=1.217 Sum_probs=7.2
Q ss_pred hcccchhcc
Q psy35 60 MGFPLITAK 68 (69)
Q Consensus 60 ~~~~~~~~~ 68 (69)
-||||+|-|
T Consensus 41 ~gFPlLTTK 49 (315)
T 3uwl_A 41 KGFPLLTTK 49 (315)
T ss_dssp GCCCCCSSS
T ss_pred CCCceeeec
Confidence 479999876
No 5
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=10.14 E-value=67 Score=16.58 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=12.5
Q ss_pred CCCCCCCccCCchhHH--HHHHHHhc
Q psy35 38 DGASTPDVGCLPVHLS--LWLVWLMG 61 (69)
Q Consensus 38 DgasTPDv~~~~~~ls--~~~~~~~~ 61 (69)
||.=|-|+...-..+. -.+-|||+
T Consensus 3 dGtFTsdysk~l~~~aak~fv~wL~~ 28 (29)
T 2g49_C 3 QGTFTSDYSKYLDSRRAQDFVQWLMN 28 (29)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhc
Confidence 5555655544333332 25667775
No 6
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=9.91 E-value=1.3e+02 Score=15.64 Aligned_cols=10 Identities=20% Similarity=0.939 Sum_probs=7.4
Q ss_pred hHHHHHHHHh
Q psy35 51 HLSLWLVWLM 60 (69)
Q Consensus 51 ~ls~~~~~~~ 60 (69)
+-++|++|-.
T Consensus 10 ~aa~wF~WGv 19 (27)
T 2nr1_A 10 SSAMWFSWGV 19 (27)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHhhHh
Confidence 4578999954
No 7
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=9.25 E-value=1.2e+02 Score=19.10 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=9.0
Q ss_pred CcceeeecCCCCC
Q psy35 2 PIDLVIDERDSTK 14 (69)
Q Consensus 2 PIDLVIDERd~~k 14 (69)
++-+|||.||-.+
T Consensus 4 ~~~IiVD~RE~~s 16 (143)
T 1j23_A 4 GVKVVVDSRELRS 16 (143)
T ss_dssp -CEEEEEGGGTTS
T ss_pred CcEEEEECCCcch
Confidence 4568889998654
No 8
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=9.02 E-value=1.7e+02 Score=20.05 Aligned_cols=9 Identities=44% Similarity=0.409 Sum_probs=8.1
Q ss_pred cceeeecCC
Q psy35 3 IDLVIDERD 11 (69)
Q Consensus 3 IDLVIDERd 11 (69)
|||||.-++
T Consensus 99 IdlVInt~d 107 (178)
T 1vmd_A 99 IDVLIFFWD 107 (178)
T ss_dssp CCEEEEECC
T ss_pred ccEEEEccC
Confidence 799999888
No 9
>2ost_A Putative endonuclease; protein-DNA complex, restriction enzyme fold,PD-(D/E)-XK MOT homing endonuclease, group I intron, hydrolase-DNA complex; 3.10A {Synechocystis SP}
Probab=8.63 E-value=1.2e+02 Score=20.81 Aligned_cols=7 Identities=57% Similarity=0.833 Sum_probs=6.0
Q ss_pred Ccceeee
Q psy35 2 PIDLVID 8 (69)
Q Consensus 2 PIDLVID 8 (69)
|.|||+|
T Consensus 35 ~YDLVvd 41 (151)
T 2ost_A 35 SYDLVFD 41 (151)
T ss_dssp SCSEEEE
T ss_pred CccEEEE
Confidence 7899988
No 10
>2rpq_B Activating transcription factor 7-interacting protein 1; SUMO, SIM, nucleus, UBL conjugation, UBL conjugation pathway, activator; NMR {Homo sapiens}
Probab=8.54 E-value=1.1e+02 Score=17.84 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=9.4
Q ss_pred CcceeeecCCCC
Q psy35 2 PIDLVIDERDST 13 (69)
Q Consensus 2 PIDLVIDERd~~ 13 (69)
.|||-.|+-|..
T Consensus 34 VIDLTlDdEe~g 45 (49)
T 2rpq_B 34 VIDLTMDDEESG 45 (49)
T ss_pred eEEeeecchhcc
Confidence 489999987754
Done!