Query psy35
Match_columns 69
No_of_seqs 20 out of 22
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 18:16:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy35.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/35hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 59.2 1.9 0.00014 21.5 1.2 13 50-62 3-15 (26)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 37.0 6.5 0.00048 20.6 1.2 16 50-65 6-21 (37)
3 d1j23a_ c.52.1.20 (A:) Putativ 28.8 9.7 0.00071 22.1 1.1 11 3-13 1-11 (131)
4 d1m7ja1 b.92.1.6 (A:7-61) N-ac 15.2 25 0.0019 17.4 0.9 6 2-7 1-6 (55)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 11.7 47 0.0034 18.2 1.4 26 38-65 5-30 (91)
6 d2bgwa2 c.52.1.20 (A:16-148) X 10.8 51 0.0037 18.9 1.4 10 5-14 6-15 (133)
7 d1f28a_ d.117.1.1 (A:) Thymidy 10.1 32 0.0023 23.4 0.3 9 60-68 45-53 (295)
8 d1nu0a_ c.55.3.8 (A:) Hypothet 10.0 49 0.0035 19.2 1.1 13 2-15 90-102 (138)
9 d1g8ma1 c.24.1.3 (A:4-200) IMP 9.4 43 0.0031 21.7 0.7 7 2-8 93-99 (197)
10 d1tswa_ d.117.1.1 (A:) Thymidy 8.5 39 0.0028 23.1 0.2 9 60-68 42-50 (316)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=59.22 E-value=1.9 Score=21.51 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=10.2
Q ss_pred hhHHHHHHHHhcc
Q psy35 50 VHLSLWLVWLMGF 62 (69)
Q Consensus 50 ~~ls~~~~~~~~~ 62 (69)
.|+++|+.|.+--
T Consensus 3 aslaiw~fw~ffa 15 (26)
T d1rzhh2 3 ASLAIYSFWIFLA 15 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999997643
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=37.04 E-value=6.5 Score=20.64 Aligned_cols=16 Identities=38% Similarity=1.030 Sum_probs=12.3
Q ss_pred hhHHHHHHHHhcccch
Q psy35 50 VHLSLWLVWLMGFPLI 65 (69)
Q Consensus 50 ~~ls~~~~~~~~~~~~ 65 (69)
.++++|+.|++-+-||
T Consensus 6 Aql~ly~Fw~FFagLi 21 (37)
T d1eysh2 6 AQITIWAFWLFFFGLI 21 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999765554
No 3
>d1j23a_ c.52.1.20 (A:) Putative ATP-dependent RNA helicase Hef, nuclease domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=28.84 E-value=9.7 Score=22.09 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=8.6
Q ss_pred cceeeecCCCC
Q psy35 3 IDLVIDERDST 13 (69)
Q Consensus 3 IDLVIDERd~~ 13 (69)
|.++||-||..
T Consensus 1 i~iiiD~RE~~ 11 (131)
T d1j23a_ 1 VKVVVDSRELR 11 (131)
T ss_dssp CEEEEEGGGTT
T ss_pred CEEEEECCCCC
Confidence 57889999854
No 4
>d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=15.16 E-value=25 Score=17.41 Aligned_cols=6 Identities=33% Similarity=1.065 Sum_probs=4.1
Q ss_pred Ccceee
Q psy35 2 PIDLVI 7 (69)
Q Consensus 2 PIDLVI 7 (69)
|.||+|
T Consensus 1 P~DllI 6 (55)
T d1m7ja1 1 PFDYIL 6 (55)
T ss_dssp CBSEEE
T ss_pred CCcEEE
Confidence 667766
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=11.74 E-value=47 Score=18.18 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=17.7
Q ss_pred CCCCCCCccCCchhHHHHHHHHhcccch
Q psy35 38 DGASTPDVGCLPVHLSLWLVWLMGFPLI 65 (69)
Q Consensus 38 DgasTPDv~~~~~~ls~~~~~~~~~~~~ 65 (69)
|+++ ++......|.++.+|+|++-.+
T Consensus 5 dP~g--p~a~~i~~L~~~~~~i~~iv~v 30 (91)
T d1fftb2 5 DPKG--QIGLEQRSLILTAFGLMLIVVI 30 (91)
T ss_dssp SCCS--CCHHHHHHHHHHHHHHTTTTTT
T ss_pred CCCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 4455567788899999987543
No 6
>d2bgwa2 c.52.1.20 (A:16-148) XPF endonuclease {Aeropyrum pernix [TaxId: 56636]}
Probab=10.76 E-value=51 Score=18.90 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=6.9
Q ss_pred eeeecCCCCC
Q psy35 5 LVIDERDSTK 14 (69)
Q Consensus 5 LVIDERd~~k 14 (69)
+|||-||-.+
T Consensus 6 IiiD~RE~~s 15 (133)
T d2bgwa2 6 VYVDVREERS 15 (133)
T ss_dssp EEEETTTTTS
T ss_pred EEEECCCCcc
Confidence 6788888543
No 7
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]}
Probab=10.06 E-value=32 Score=23.38 Aligned_cols=9 Identities=56% Similarity=0.932 Sum_probs=7.3
Q ss_pred hcccchhcc
Q psy35 60 MGFPLITAK 68 (69)
Q Consensus 60 ~~~~~~~~~ 68 (69)
-||||+|.|
T Consensus 45 ~gFPlLTTK 53 (295)
T d1f28a_ 45 KTFPLLTTK 53 (295)
T ss_dssp GBCCCCSSS
T ss_pred CCcceeeec
Confidence 489999876
No 8
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=10.02 E-value=49 Score=19.23 Aligned_cols=13 Identities=46% Similarity=0.427 Sum_probs=9.3
Q ss_pred CcceeeecCCCCCC
Q psy35 2 PIDLVIDERDSTKP 15 (69)
Q Consensus 2 PIDLVIDERd~~kp 15 (69)
||-+| |||=+++-
T Consensus 90 ~V~~~-DEr~TS~e 102 (138)
T d1nu0a_ 90 EVKLH-DERLSTVE 102 (138)
T ss_dssp CEEEE-EEECCCCC
T ss_pred CeEEE-eccccHHH
Confidence 55554 99998864
No 9
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.44 E-value=43 Score=21.65 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=5.1
Q ss_pred Ccceeee
Q psy35 2 PIDLVID 8 (69)
Q Consensus 2 PIDLVID 8 (69)
||||||=
T Consensus 93 ~IdlVvv 99 (197)
T d1g8ma1 93 LVRVVVC 99 (197)
T ss_dssp CEEEEEE
T ss_pred Ccceeee
Confidence 6888874
No 10
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]}
Probab=8.51 E-value=39 Score=23.06 Aligned_cols=9 Identities=67% Similarity=1.217 Sum_probs=6.9
Q ss_pred hcccchhcc
Q psy35 60 MGFPLITAK 68 (69)
Q Consensus 60 ~~~~~~~~~ 68 (69)
-||||+|-|
T Consensus 42 ~gfPlLTTK 50 (316)
T d1tswa_ 42 KGFPLLTTK 50 (316)
T ss_dssp SCCCCCSSS
T ss_pred CCCceeEec
Confidence 378888876
Done!