RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy35
         (69 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.18
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 5/34 (14%)

Query: 22  TTNGNDGRSNADSASHDGASTPDVGCLPVHLSLW 55
           T +G+D R  + S S        +  LPV    W
Sbjct: 462 TFDGSDLRVLSGSISER--IVDCIIRLPVK---W 490


>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural
           genomics, protein structure initiative; 2.08A
           {Lactobacillus plantarum WCFS1}
          Length = 290

 Score = 23.3 bits (51), Expect = 7.2
 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 2/18 (11%)

Query: 1   MPIDLVIDERDSTKPLPE 18
           +P++ VI  R ST  L E
Sbjct: 268 IPVNPVI--RKSTARLGE 283


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0813    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,040,347
Number of extensions: 44435
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (23.3 bits)