RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy35
         (69 letters)



>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
          {Lactococcus lactis [TaxId: 1358]}
          Length = 468

 Score = 26.7 bits (58), Expect = 0.20
 Identities = 6/29 (20%), Positives = 7/29 (24%), Gaps = 1/29 (3%)

Query: 20 GGTTNGNDGRSNADSASHD-GASTPDVGC 47
          G T     G    D    D    T +   
Sbjct: 22 GATHTDGKGPVAWDKYLEDNYWYTAEPAS 50


>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
          [TaxId: 274]}
          Length = 426

 Score = 24.8 bits (53), Expect = 0.97
 Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 5/33 (15%)

Query: 20 GGTTNGNDGRSNADSASHD-----GASTPDVGC 47
          G T     G S  D+ +         ST +  C
Sbjct: 18 GATQEDGRGPSIWDAFAQRPGAIRDGSTGEPAC 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 252,820
Number of extensions: 8088
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 2
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.5 bits)