BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3500
         (98 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 47/79 (59%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C       +D+ +H R HTGEKPYKC  C  S +Q + L+ H+R HTG+KPY C 
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109

Query: 79  QCRDTFSSLYLFRNHLQSH 97
           +C  +FS L   R H ++H
Sbjct: 110 ECGKSFSQLAHLRAHQRTH 128



 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 43/79 (54%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C      S+ + +H R HTGEKPYKC  C  S +    L  H+R HTG+KPY C 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81

Query: 79  QCRDTFSSLYLFRNHLQSH 97
           +C  +FS     R H ++H
Sbjct: 82  ECGKSFSQRANLRAHQRTH 100



 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 43/79 (54%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C        +++ H R HTGEKPY C  C  S +Q + L+ H+R HTG+KPY C 
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137

Query: 79  QCRDTFSSLYLFRNHLQSH 97
           +C  +FS       H ++H
Sbjct: 138 ECGKSFSREDNLHTHQRTH 156



 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 41/79 (51%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C         ++ H R HTGEKPYKC  C  S ++   L  H+R HTG+KPY C 
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165

Query: 79  QCRDTFSSLYLFRNHLQSH 97
           +C  +FS       H ++H
Sbjct: 166 ECGKSFSRRDALNVHQRTH 184



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
           Y C  C       +++  H R HTGEKPYKC  C  S ++  AL +H+R HTG K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 43 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          GEKPY C  C  S ++S  L  H+R HTG+KPY C +C  +FS       H ++H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH 72


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
          Length = 87

 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 47/79 (59%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
          Y C  C      S +++KH R HTGEKPYKC  C  S +QSS L+ H+R HTG+KPY C 
Sbjct: 5  YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64

Query: 79 QCRDTFSSLYLFRNHLQSH 97
          +C  +FS       H ++H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83



 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          EKPYKC  C  S +QSS L+ H+R HTG+KPY C +C  +FS     + H ++H
Sbjct: 2  EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55



 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 30/55 (54%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          Y C  C      S D++KH R HTGEKPYKC  C  S ++S  L  H+R H   K
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
          Length = 90

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD       ++  H+R HTG+KP++C  C  + +Q ++L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH 57

Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F++L+    H + H
Sbjct: 58 TGEKPFACDICGRKFATLHTRTRHTKIH 85



 Score = 33.5 bits (75), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC----TQSSALKIHERK 68
          + C  C  +      +  H+R HTGEKP+ C+ C        T++   KIH R+
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQ 88


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (CLONE #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (CLONE #2)
          Length = 90

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD       ++  H+R HTG+KP++C  C  + +Q + L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57

Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F++L+    H + H
Sbjct: 58 TGEKPFACDICGRKFATLHTRDRHTKIH 85



 Score = 32.7 bits (73), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC----TQSSALKIHERK 68
          + C  C  +      + +H+R HTGEKP+ C+ C        T+    KIH R+
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQ 88


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
          Bound To Its Target Dna
          Length = 90

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
          S  +K H+R HTGEKPY C++  C +   +S  L  H RKHTG +P+ CQ+C   FS   
Sbjct: 21 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 80

Query: 89 LFRNHLQSH 97
              H++ H
Sbjct: 81 HLALHMKRH 89



 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
           C +    S+++ +H RKHTG +P++C+ C  + ++S  L +H ++H
Sbjct: 43 GCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
          Bound To Its Target Dna
          Length = 89

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
          S  +K H+R HTGEKPY C++  C +   +S  L  H RKHTG +P+ CQ+C   FS   
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 79

Query: 89 LFRNHLQSH 97
              H++ H
Sbjct: 80 HLALHMKRH 88



 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
           C +    S+++ +H RKHTG +P++C+ C  + ++S  L +H ++H
Sbjct: 42 GCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
          Zinc-Binding Domain Of The Zinc Finger Protein 64,
          Isoforms 1 And 2
          Length = 96

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          Y C  CDY    S  + KH+R H+ E+P+KC+ C Y+   SS L +H R HTGD
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90



 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%)

Query: 16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
          S  + C  C       + +K HMR HTG KPYKC+ C Y+   SS+L  H R H+ ++P+
Sbjct: 6  SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65

Query: 76 ICQQCRDTFSSLYLFRNHLQSH 97
           CQ C     +      HL+SH
Sbjct: 66 KCQICPYASRNSSQLTVHLRSH 87


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
          Length = 90

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S D+ +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57

Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S   K H + H   K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
          Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
          Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
          Finger Domain Bound To Dna
          Length = 119

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 34 MKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFR 91
          ++ H RKHTGEKPY+C++  C    ++S  LK H+R+HTG KP+ C+ C+  FS     +
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83

Query: 92 NHLQSH 97
           H ++H
Sbjct: 84 THTRTH 89



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 24  CDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ--QCR 81
           C+     S+ +K+H R+HTG KP++C+ C    ++S  LK H R HTG+KP+ C+   C+
Sbjct: 44  CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103

Query: 82  DTFS-SLYLFRNH 93
             F+ S  L R+H
Sbjct: 104 KKFARSDELVRHH 116



 Score = 32.3 bits (72), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 69
           + C  C      S+ +K H R HTGEKP+ C +  C     +S  L  H   H
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
          Length = 87

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 82
          +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69

Query: 83 TFSSLYLFRNHLQSH 97
           F+     + H + H
Sbjct: 70 KFARSDERKRHTKIH 84


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57

Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S   K H + H   K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
          Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 82
          +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HTG+KP+ C  C  
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70

Query: 83 TFSSLYLFRNHLQSH 97
           F+     + H + H
Sbjct: 71 KFARSDERKRHTKIH 85


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
          Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 8  STLSRPNISYKYTCYACDYHT-----LMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSS 60
          S  S P++  +   Y CDY         S  +K H+R HTGEKPYKC  E C +   +S 
Sbjct: 3  SGSSGPDLEKRRIHY-CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61

Query: 61 ALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
           L  H RKHTG KP+ C  C  +FS       H++ H
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S ++ +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57

Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S   K H + H   K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
          Length = 90

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S ++ +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57

Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S   K H + H   K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
          Length = 90

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 10 LSRPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          + RP   Y     +CD     S  + +H+R HTG+KP++C  C  + ++S  L  H R H
Sbjct: 1  MERP---YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57

Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          TG+KP+ C  C   F+     + H + H
Sbjct: 58 TGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S   K H + H   K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYI 76
           + C  C    + S  +K+H   HTGEKP++C  E C    +    L+ H R HTGD+PY+
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94

Query: 77  C--QQCRDTFSSLYLFRNHLQSHG 98
           C    C   F+     ++H+ +H 
Sbjct: 95  CPFDGCNKKFAQSTNLKSHILTHA 118



 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLYLFR 91
          M+KH+  H G + + C  C  +  +SS LK H+  HTG+KP+ C  + C   FS  +  R
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81

Query: 92 NHLQSH 97
           H++ H
Sbjct: 82 THVRIH 87


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 31/53 (58%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
          Y C  C        DMKKH   HTGEKP+KC+ C  + +QSS L  H RKHTG
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82



 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
          + C  C      S  +  H+  H+  +PY C+YC     Q S +K H   HTG+KP+ CQ
Sbjct: 2  FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 79 QCRDTFSSLYLFRNHLQSH 97
           C   FS       H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domain Of Zinc Finger Protein 435
          Length = 77

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 31/57 (54%)

Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +Y C  C      S D+ KH R HTGEKPYKC+ C  +  Q S L  H R HTG  P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          YKC+ C  S + SS L  H R HTG+KPY C +C   F    + R+HL  H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF----IQRSHLIGH 65


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 37  HMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSS 86
           HMR+HTGEKP+KC  E C  S ++   LK H R HTG+KPY+C+   C   FS+
Sbjct: 58  HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN 111



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 32  EDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHE-RKHTGDKPYICQ--QCRDTFSS 86
           E++K H+R HTGEKPY CE+  C+ + + +S    H+ R H+ +KPY+C+   C   ++ 
Sbjct: 83  ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142

Query: 87  LYLFRNHLQS-HG 98
               R H+++ HG
Sbjct: 143 PSSLRKHVKTVHG 155



 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 11/55 (20%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLYLFRNHLQSH 97
          +P+K +Y          L +H R+HTG+KP+ C  + CR ++S L   + HL+SH
Sbjct: 47 RPFKAQY---------MLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 37  HMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLYLFRN 92
           H+R HTGEKP+ C +  C     +S  LKIH+R HTG+KP+ C  + C   F++    + 
Sbjct: 81  HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140

Query: 93  HLQSH 97
           H+  H
Sbjct: 141 HMHVH 145



 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 31  SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDK 73
           SE++K H R HTGEKP+KCE+  C      SS  K H   HT DK
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Zinc Finger Protein 24
          Length = 72

 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          EKPY C  C  + ++SS L  H+R HTG+KPY C +C   FS      NH + H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 70
          Y C  C      S  + +H R HTGEKPYKC  C  + +Q+S L  H+R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
          In Zinc Finger Protein 278
          Length = 95

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFSSLYLFR 91
          + +H   H+GEKPY C  C     +   +  H R H G   KPYICQ C   FS      
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN 82

Query: 92 NHLQ 95
           H++
Sbjct: 83 GHIK 86



 Score = 29.3 bits (64), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          +G     CE C         L  H+  H+G+KPY C  C   F        H++SH
Sbjct: 3  SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58



 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTG 71
          Y+C  C       + M  H+R H G   KPY C+ C    ++   L  H ++ H+G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
          Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          +  H+R HTGEKPYKCE+C Y+  Q ++L+ H  +H
Sbjct: 20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 26/55 (47%)

Query: 43 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          G    +C YC      +  L IH R HTG+KPY C+ C    +     R HL+ H
Sbjct: 1  GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
          Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
          ++ C  C  H   S ++  H R HT E+PY C+ C  +  +   L+ H   H+ +KP+ C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76

Query: 78 QQCRDTF 84
          Q+C   F
Sbjct: 77 QECGKGF 83



 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNH 93
          +K + C++C    T+S  L IHER HT ++PY C  C   F      R+H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
          Northeast Structural Genomics Consortium
          Length = 74

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          Y C  C        ++  H   HTGEKPY+C  C     + + LK H R H+G+KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73



 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          +KPYKC+ C  S      L  H+  HTG+KPY C  C   F+     + H + H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
          Length = 73

 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 70
          +CD     S+++ +H+R HTG+KP++C  C  + ++S  L  H R HT
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73



 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 45 KPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          +PY C  E C    ++S  L  H R HTG KP+ C+ C   FS       H+++H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
          Zinc Finger Protein 32
          Length = 41

 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +GEKPY+C+ C  S +Q  +L +HER HTG  P
Sbjct: 6  SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 35/78 (44%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
           Y C  C    +    +++H   H+ EK Y C YC      +     HE  HTG++ Y C 
Sbjct: 23  YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82

Query: 79  QCRDTFSSLYLFRNHLQS 96
            C  +F +     +H++S
Sbjct: 83  ACGKSFINYQFMSSHIKS 100



 Score = 29.3 bits (64), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 18  KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCA-----YSCTQSSALKIHERKHTGD 72
           KY C  C+    ++E   KH   HTGE+ Y+C  C      Y    S    +H +  +GD
Sbjct: 50  KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGD 109

Query: 73  -KPYICQQCR 81
            K Y    CR
Sbjct: 110 SKLYRLHPCR 119


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
          Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK---HTGDKPYICQQCRDTFSSLYLF 90
          +K H RKHTGEKP++C  C     +   L  HE +   +  ++ + C  C++TF      
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82

Query: 91 RNHLQSH 97
          R H+ SH
Sbjct: 83 RLHMVSH 89



 Score = 35.4 bits (80), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 19  YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTG 71
           +TC  C        +++ HM  HTGE PYKC  C+    Q   L+ H  K H+G
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP+KCE C    TQ+S L  H+R HTG+KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40


>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
          Zinc Finger Protein 473
          Length = 42

 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          +GEKPY C+ C  + TQSS L IH R HTG+
Sbjct: 6  SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36



 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          +G+KPY+CQ+C   F+       H + H
Sbjct: 6  SGEKPYVCQECGKAFTQSSCLSIHRRVH 33


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
          Domains Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 26/61 (42%)

Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
          +HM  H G +PY C  C         L  H + HTG KPY C  C   F     F  H+ 
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT 86

Query: 96 S 96
          S
Sbjct: 87 S 87



 Score = 32.7 bits (73), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCA 53
          Y C  C     M   +  HM+ HTG KPY+C  CA
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72



 Score = 29.6 bits (65), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          +G+K Y C+ C  S T  S    H   H G +PY C  C   F   +    H++ H
Sbjct: 6  SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C  + +Q+S L  H+R HTG+KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 26.2 bits (56), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          Y C  C      +  + +H R HTGEKP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 85
          KP++C  C  + ++S  L  H R HTG+KP+ C  C   F+
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
          + C  C  +   S+ +  H+R HTGEKP+ C+ C     +S      ERK   D  +I  
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD-----ERKRHRDIQHILP 58

Query: 79 QCRDTFSSLYLFRNHLQS 96
             D    L     HL++
Sbjct: 59 ILEDKVEELLSKNYHLEN 76


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP++CE C    TQ+S L  H+R HTG+KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
          Nmr, 25 Structures
          Length = 60

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGD 72
          + C  C       E +K+H R HT EKPY C  C  + T+   L  H +K H+G+
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57



 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%)

Query: 47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
          + CE C  +  +   LK H R HT +KPY C  C   F+   L   H Q
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC+ C  S    S+L +H+R HTG+KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C  C  S T+ S L +H++ HTG+KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY C  C  + +Q S L  H+R HTG+KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 72 DKPYICQQCRDTFSSLYLFRNHLQSH 97
          +KPY C +C  TFS   +   H ++H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C    TQ+S L  H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +K +KC  C  + TQSS+L +H+R HTG+KP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C    TQ+S L  H+R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C    TQ+S L  H R HTG+KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40


>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
          Human Zinc Finger Protein 224
          Length = 46

 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP+KC  C    ++ SAL +H + HTG+KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          T EKP++C+ C  S  Q SAL  H   HTG+KP
Sbjct: 8  TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40


>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          612- 644) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP++C  C  S + SS L  H+R HTG+KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          + C  C     +S  +  H R HTGEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          E+P+ C +C  +   +S L  H R H G +P  C +C   F        HL+ H
Sbjct: 2  ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY C+YC  +   S+ L  H+R HTG+KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          Y C  C     +S ++ +H R HTGEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 36.6 bits (83), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY CE C  +    S L+ H+R HTG+KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          Y C  C    +    +++H R HTGEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EK YKC+ C    +QSS L+ H+R HTG+KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          Y C  C      S  ++ H R HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
          Zinc Finger Protein 32
          Length = 42

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C+ C  + +Q  +L +H R HTG  P
Sbjct: 9  EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39


>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          KPYKC  C+Y+    + L +H RKHTG+K
Sbjct: 8  KPYKCPQCSYASAIKANLNVHLRKHTGEK 36



 Score = 32.0 bits (71), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEK 45
          Y C  C Y + +  ++  H+RKHTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36


>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
          Length = 92

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 34 MKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQ 78
          ++ H+ KHTGEKP+ C  E C    T    L  H   HTG+K + C 
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67



 Score = 32.7 bits (73), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNHLQSH 97
          K Y C +  C  +  ++  L+ H  KHTG+KP+ C++  C   F+SL+    H  +H
Sbjct: 2  KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 36.2 bits (82), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          KPY+C  C  + +Q+S L  H+R HTG+KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          Y C  C      +  + +H R HTGEKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C+ C+ + TQ + L  H++ HTG+KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          EKPYKC  C  + T+ S L IH++ HTG++
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          E+P+KC  C  S  QS+ L  H+R HTG+KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 25.8 bits (55), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          + C  C    + S  + +H R HTGEKP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C  C  +  Q + L  H+R HTG+KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          Y C  C        ++ +H R HTGEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C+ C  + +Q++ L  H+R HTG+KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40


>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
          Domain Bound To The 5s Ribosomal Rna Gene Internal
          Control Region
 pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
          Domain Bound To The 5s Ribosomal Rna Gene Internal
          Control Region
          Length = 190

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 13 PNISYKYTCYACDYHTLMSEDMK--KHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERK 68
          P +  +Y C   D     +++ K   H+ KHTGEKP+ C  E C    T    L  H   
Sbjct: 7  PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66

Query: 69 HTGDKPYIC 77
          HTG+K + C
Sbjct: 67 HTGEKNFTC 75



 Score = 30.8 bits (68), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNHLQSH 97
          K Y C +  C  +  ++  L+ H  KHTG+KP+ C++  C   F+SL+    H  +H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67



 Score = 29.3 bits (64), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 23  ACDYHTLMSEDMKKHMRKHTGEK--PYKC--EYCAYSCTQSSALKIHERKHTGDKPYIC- 77
            CD       +MKKH  +    K   Y C  E C  +  + + LK+H+  HT   PY C 
Sbjct: 79  GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138

Query: 78  -QQCRDTFSSLYLFRNHLQSHG 98
            + C   FS     + H + H 
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHA 160


>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          435- 467) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.4 bits (80), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C  C  S  + S L +H+R HTG+ P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 35.4 bits (80), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C  +    S+L IH+  H+G+KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40


>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 41

 Score = 35.4 bits (80), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +G++ Y+C+ C  S  Q  +L +HER HTG  P
Sbjct: 6  SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.4 bits (80), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 18/31 (58%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY C  C  S  Q S L  H R HTG+KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          Y C  C    +    + +H R HTGEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 35.4 bits (80), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C    TQ+S L  H   HTG+KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40


>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
          Cys2His2 Zinc Finger From The Human Enhancer Binding
          Protein Mbp-1
          Length = 57

 Score = 35.0 bits (79), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 22/48 (45%)

Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH 65
          KY C  C         +KKH+R HT  +PY C YC +S      L  H
Sbjct: 1  KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48



 Score = 33.5 bits (75), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 24/50 (48%)

Query: 47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQS 96
          Y CE C     + S LK H R HT  +PY C  C  +F +      H++S
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          EKPYKC  C  S T  S L+IH++ HTG++
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 35.0 bits (79), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP++C  C  +    S L +H+R HTG+KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 35.0 bits (79), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C    TQ+S L  H   HTG+KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 34.7 bits (78), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          +GEKPY C  C    +  S L +H+R HTG+K
Sbjct: 6  SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 34.7 bits (78), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +GEKPY C  C  + T  S L +H+  HTG KP
Sbjct: 6  SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38


>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 46

 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          KPY C  CA + +  S L +H+R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C  C  + T  S L  H++ HTG+KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP+KC  C  S  Q   L  H+R HTG+KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C  C  + +   +L +H+R H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 33.9 bits (76), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGD---KPYICQQCRDTFSSLYLFRNHL 94
          R HTGEKPY C +C  +  Q   L +H +R H  +     ++C +C  TF+     RN +
Sbjct: 8  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR----RNTM 63

Query: 95 QSH 97
            H
Sbjct: 64 ARH 66


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 33.9 bits (76), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP++C  C  S + +S L +H+R HTG+ P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
          Of Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 33.9 bits (76), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 34 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          ++ H R H  ++P+KC YC++   Q S L  H +K  GD
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63



 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 46 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
          P KC  C+YSC+  +AL+IHER H  D+P+ C  C
Sbjct: 9  PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYC 43


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 33.9 bits (76), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C      +S L  H+R HTG+KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 33.9 bits (76), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKCE C         L +H++ HTG++P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40


>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          581- 609) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 33.9 bits (76), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          +GEKPY+C  C  +    S L IH+R HTG+
Sbjct: 6  SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 33.9 bits (76), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +G KPY C  C  +    S L IH R HTG+KP
Sbjct: 6  SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38


>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          598- 626) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 33.5 bits (75), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKCE C     Q + L+ H   HTG  P
Sbjct: 9  EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 33.5 bits (75), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          +G+KPY C  C  +    S L IHER HTG+
Sbjct: 6  SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domains From Human Krueppel-Like Factor 10
          Length = 72

 Score = 33.5 bits (75), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 69
           C      S  +K H R HTGEKP+ C +  C     +S  L  H R H
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 30.0 bits (66), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 52 CAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLYLFRNHLQSH 97
          C  +  +SS LK H R HTG+KP+ C  + C   F+       H ++H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 33.5 bits (75), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY C  C  + +  S L IH R H+G+KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 25.4 bits (54), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 72 DKPYICQQCRDTFSSLYLFRNHLQSH 97
          +KPY C +C   FSS      H+++H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 33.5 bits (75), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +KPYKC  C    TQ+S L  H   HTG+KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 33.5 bits (75), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +G+KP  C  C  +  QSS L  H+R H+G+KP
Sbjct: 6  SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38


>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          584- 616) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 33.1 bits (74), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP+KC+ C  +  Q+  L  H R HTG+KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40


>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 33.1 bits (74), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EK +KC  C    +Q+S+L++H+  H G+KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 33.1 bits (74), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C+ C  + +  ++L  H+R H+G+KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.7 bits (73), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY C+ C  S   +S L  H+R H+G+KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40


>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
          Transcriptional Repressor Ctcf Protein
          Length = 77

 Score = 32.7 bits (73), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHT 70
          R H+GEKPY+C  C    TQS  +K+H  +KHT
Sbjct: 8  RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40



 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 19 YTCYACDYHTLMSEDMKKH-MRKHT-GEKPYKCEYCAYSCTQSSALKIHERK 68
          Y CY C      S  MK H ++KHT     + C +C     + S L +H RK
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 32.3 bits (72), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          EKPYKCE C     +   L +H+R H G+K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 32.3 bits (72), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY+C  C  + +  S+L  H+  HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.3 bits (72), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          E+PY C  C  + T  S L  H++ HTG+KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          Y C  C        ++ KH + HTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 32.3 bits (72), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C  +    S L  H+  HTG+KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 32.3 bits (72), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          EKPY+C  C  +  ++S L +H+R H+G+
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38


>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
          Length = 29

 Score = 32.0 bits (71), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          KP +C  C  + TQ+S+L  H R+HTG+K
Sbjct: 1  KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 32.0 bits (71), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          EKPY+C  C  +    S L +H+R HTG+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38


>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 44

 Score = 31.6 bits (70), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTG 71
          EKPY+C  C  +    S L +HER H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37


>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 31.6 bits (70), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C     ++S L  H+  HTG+KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40


>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          626- 654) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 15/31 (48%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY CE C         LK H R HTG  P
Sbjct: 9  EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39


>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
          Domains Of Zinc Finger Protein 692
          Length = 78

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHT 70
          +G    +CE C ++C Q ++L  H+RKH 
Sbjct: 3  SGSSGLQCEICGFTCRQKASLNWHQRKHA 31


>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          696- 728) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C  +   +S+   H+R HTG +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EK YKC  C    +++S L  H++ HTG+KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 31.2 bits (69), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC+ C  +   SS L  H   H+G++P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 31.2 bits (69), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          E P+ C  C    T  + L IH++ HTG++P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40


>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          395- 427) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 30.8 bits (68), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP+KCE C      +S    H+R H+G+KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 30.8 bits (68), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          E+ Y+C  C  +  Q S L +H+R H G+KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 30.8 bits (68), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          E+ Y+C  C  +  + S L +H+R HTG+KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40


>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          441- 469) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 30.8 bits (68), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
          +GEKPY C  C  + T  S L +H+  HTG
Sbjct: 6  SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35


>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
          Suppressor Protein (Wt1) Finger 3
          Length = 29

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          KP++C+ C    ++S  LK H R HTG+K
Sbjct: 1  KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29


>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 484
          Length = 42

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          +GEKPY C  C  +  + S    HER HTG+
Sbjct: 6  SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36


>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
          Length = 33

 Score = 30.4 bits (67), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKH 69
          TG KP++C  C +S ++S  L +H ++H
Sbjct: 3  TGIKPFQCPDCDWSFSRSDHLALHRKRH 30


>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          423- 455) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 30.4 bits (67), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          EKPYKC  C     +   L  H+R HTG+K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39


>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 30.4 bits (67), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP+ C  C  + +    L  H R HTG+KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40


>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          724- 756) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          ++PY+C  C  +    S+L  H R HTG+KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40


>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          283- 315) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 30.0 bits (66), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKP+KC+ C  S    S L  H   HT +KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 30.0 bits (66), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 47 YKCEYCAYSCTQSSALKIHERKHTGDKP 74
          ++C  C  + T+ S L +H++ HTG+KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 29.6 bits (65), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          +KP++C +C  S      L  H+R HTG+K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39


>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          329- 359) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 29.6 bits (65), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +GEK ++C  C  + +  S L IH+R HTG+ P
Sbjct: 6  SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38


>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
          Domain From Human Krueppel-Like Factor 15
          Length = 48

 Score = 29.6 bits (65), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 44 EKPYKCEY--CAYSCTQSSALKIHERKHTGDKP 74
          EKP+ C +  C +  ++S  L  H R H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42



 Score = 25.4 bits (54), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 20 TCYACDYHTLMSEDMKKHMRKHTGEKP 46
          T   C +    S+++ +H R H+G KP
Sbjct: 16 TWPGCGWRFSRSDELSRHRRSHSGVKP 42


>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 224
          Length = 46

 Score = 29.6 bits (65), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EK Y C+ C  S +++  L  HER H+G+KP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40


>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          536- 568) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.6 bits (65), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          KPY C  C  + +  S+L  H+  HTG+KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40


>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
          Length = 37

 Score = 29.3 bits (64), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
          R  TG KP++C  C  S ++S  L +H ++H
Sbjct: 4  RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34


>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          339- 371) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 29.3 bits (64), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKCE C         L  H   HTG+KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 29.3 bits (64), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPYKC  C  +  + + L  H R HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40


>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 46

 Score = 29.3 bits (64), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 46 PYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          PYKC  C  S +    L +H+R HT +KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40


>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 42

 Score = 28.9 bits (63), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          +GEK ++C  C  + +  S L IH+R HTG+
Sbjct: 6  SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36


>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 28.9 bits (63), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          KP+KC  C Y+    S LK H  +H+ +K
Sbjct: 8  KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36



 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEK 45
          + C  C+Y T    ++K HM +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36


>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
          Length = 30

 Score = 28.9 bits (63), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          KPY C +C        AL+ H R HTG+K
Sbjct: 2  KPYVCIHCQRQFADPGALQRHVRIHTGEK 30


>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          484- 512) Of Human Zinc Finger Protein 473
          Length = 42

 Score = 28.5 bits (62), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
          +G+KPY C +C++TFS       H + H
Sbjct: 6  SGEKPYSCAECKETFSDNNRLVQHQKMH 33



 Score = 26.2 bits (56), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHT 70
          +GEKPY C  C  + + ++ L  H++ HT
Sbjct: 6  SGEKPYSCAECKETFSDNNRLVQHQKMHT 34


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 28.5 bits (62), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          E PY+C  C  + ++   L  H+R H G+KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40


>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          284- 316) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          T EKPYKC  C  +    S L  H+  HTG+K
Sbjct: 8  TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39


>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          273- 303) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          +GEKP+ C  C  + +  S L +H++ H  +KP
Sbjct: 6  SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 42

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
          +GE PY+C  C  +  +   L  H+R H G+
Sbjct: 6  SGENPYECSECGKAFNRKDQLISHQRTHAGE 36


>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          768- 800) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          K ++C  C    T  S L  H+R HTG+KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40



 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          + C+ C     +   + +H R HTGEKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40


>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
          Length = 29

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 46 PYKCEYCAYSCTQSSALKIHERKHTGDK 73
          P KC  C    T S  LK H R H+G+K
Sbjct: 2  PLKCRECGKQFTTSGNLKRHLRIHSGEK 29



 Score = 25.8 bits (55), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 21 CYACDYHTLMSEDMKKHMRKHTGEK 45
          C  C      S ++K+H+R H+GEK
Sbjct: 5  CRECGKQFTTSGNLKRHLRIHSGEK 29


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGD 72
          KPY C  C  +    S L IH R HTG+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38


>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          171- 203) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          EK + C+ C  +    SAL+IH+R H G+K
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          +KPY+C+ C  +  Q   L  H+R HTG++
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39



 Score = 25.4 bits (54), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 73 KPYICQQCRDTFSSLYLFRNHLQSH 97
          KPY C++CR TF  +     H + H
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVH 35


>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
          Factor Sp1f2, Minimized Average Structure
 pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
          Binding Domain (Zinc Finger 2)
          Length = 31

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 45 KPYKC--EYCAYSCTQSSALKIHERKHTGDK 73
          +P+ C   YC    T+S  L+ H+R HTG+K
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          EKPY C  C  + T  S L  H++ HT  KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40


>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
          Finger Protein 32
          Length = 42

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          E PY C  C  S TQ  +L +H+R  +   P
Sbjct: 9  ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39


>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 47

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHER-KHTGDKP 74
          +KPY+C  C  +  Q+++L  H R  HTG+KP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41


>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          341- 373) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          E+ ++C  C     Q+S    H R HTG+KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40



 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKP 46
          + C  C    L + +  +H R HTGEKP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
          T E P+KC  C  + + S+ L  H+  H G+ P
Sbjct: 8  TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40


>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
          Rrna 55mer (Nmr Structure)
          Length = 87

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 34 MKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTG 71
          +K H   HT + PY+C  E C    +  S LK HE+ H G
Sbjct: 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58


>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
          Protein Zfy: 2d Nmr Structure Of An Even Finger And
          Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 45 KPYKCEYCAYSCTQSSALKIH-ERKHTGDK 73
          K Y+C+YC Y    SS LK H + KH+ +K
Sbjct: 1  KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30


>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 46

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          EKP KC  C  +    S L +H+R H  DK
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39


>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
          The Free Structure With Those In Nucleic-Acid Complexes
          Length = 85

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 34 MKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTG 71
          +K H   HT + PY+C  E C    +  S LK HE+ H G
Sbjct: 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58


>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
          Zinc Finger Protein 278
          Length = 45

 Score = 26.2 bits (56), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
          +GEKPY C  C     +   +  H R H G
Sbjct: 6  SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35


>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
          Length = 26

 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 13/25 (52%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKH 69
          KPY CE C     QSS L  H R H
Sbjct: 1  KPYVCERCGKRFVQSSQLANHIRHH 25


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHT 70
          EKPY C  C  +   S+ L  H R HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36


>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
          Length = 30

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 45 KPYKCEYCAYSCTQSSALKIH-ERKHTGDK 73
          K Y+C+YC +    SS LK H + KH+ +K
Sbjct: 1  KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30


>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
          Zinc Finger Protein 473
          Length = 44

 Score = 25.4 bits (54), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHT 70
          E P+KC  C    TQ + L  HER H 
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36


>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
          Length = 30

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
          KPY+C+YC  S +  ++   H   H  DK
Sbjct: 2  KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30


>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          204- 236) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 25.0 bits (53), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 73 KPYICQQCRDTFSSLYLFRNHLQSH 97
          KPY C +C  +FS  Y    H  +H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITH 35


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.132    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,052,368
Number of Sequences: 62578
Number of extensions: 106651
Number of successful extensions: 825
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 473
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)