RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3500
(98 letters)
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 76.4 bits (189), Expect = 4e-20
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF 90
S + +H+R HTG+KP++C C + ++S L H R HTG+KP+ C C F+
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78
Query: 91 RNHLQSH 97
+ H + H
Sbjct: 79 KRHTKIH 85
Score = 59.8 bits (146), Expect = 1e-13
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
+ C C + S+ + H+R HTGEKP+ C+ C +S K H + H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 53.6 bits (130), Expect = 3e-11
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 44 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
E+PY C E C +QS +L H R HTG KP+ C+ C FS H+++H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 73.7 bits (182), Expect = 3e-19
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
C C Y ++ H R H ++P+KC YC++ Q S L H +K GD
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 72.1 bits (178), Expect = 9e-19
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+ P KC C+YSC+ +AL+IHER H D+P+ C C H++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 34.4 bits (80), Expect = 5e-04
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
+ C C + T ++ KHM+K G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 74.0 bits (183), Expect = 4e-19
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
+ C C + +K HMR HTG KPYKC+ C Y+ SS+L H R H+ ++P+ CQ
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 79 QCRDTFSSLYLFRNHLQSH 97
C + + L H
Sbjct: 69 ICPYASRN----SSQLTVH 83
Score = 67.4 bits (166), Expect = 1e-16
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
Y C CDY S + KH+R H+ E+P+KC+ C Y+ SS L +H R HTGD
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 64.0 bits (157), Expect = 3e-15
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
P+KCE C ++ LK H R HTG KPY C+ C + + L H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD----SSSLNKH 55
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 73.3 bits (181), Expect = 4e-19
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 35 KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFSSLYLFRN 92
R H+GEKPY+C C TQS +K+H + + C C +
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 93 HLQSH 97
HL+
Sbjct: 64 HLRKQ 68
Score = 62.2 bits (152), Expect = 9e-15
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTGDKPY 75
Y CY C S MK H+ + E + C +C + S L +H RK H+ P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 37.9 bits (89), Expect = 3e-05
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 62 LKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
R H+G+KPY C C F+ + H+
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 73.3 bits (181), Expect = 1e-18
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFSSLY 88
S+ +K+H R+HTG KP++C+ C ++S LK H R HTG+KP+ C+ C+ F+
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Query: 89 LFRNHLQSH 97
H H
Sbjct: 111 ELVRHHNMH 119
Score = 72.2 bits (178), Expect = 4e-18
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
++ H RKHTGEKPY+C++ C ++S LK H+R+HTG KP+ C+ C+ FS
Sbjct: 21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSD 80
Query: 89 LFRNHLQSH 97
+ H ++H
Sbjct: 81 HLKTHTRTH 89
Score = 55.6 bits (135), Expect = 9e-12
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 42 TGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLYLFRNHLQSH 97
+ ++P+ C Y C + S L++H RKHTG+KPY C + C FS + H + H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Score = 49.8 bits (120), Expect = 2e-09
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 69
+ C C S+ +K H R HTGEKP+ C + C +S L H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 70.6 bits (174), Expect = 4e-18
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 30 MSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYL 89
M H +KPYKC+ C S L H+ HTG+KPY C C F+
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR--- 57
Query: 90 FRNHLQSH 97
+L++H
Sbjct: 58 -PANLKTH 64
Score = 60.2 bits (147), Expect = 5e-14
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
Y C C ++ H HTGEKPY+C C + + LK H R H+G+KPY
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 70.5 bits (174), Expect = 1e-17
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
+K + C++C T+S L IHER HT ++PY C C F ++HL+
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR----QDHLR 62
Query: 96 SH 97
H
Sbjct: 63 DH 64
Score = 68.6 bits (169), Expect = 6e-17
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
+ C C H S ++ H R HT E+PY C+ C + + L+ H H+ +KP+ CQ
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 79 QCRDTFSSLYLFRNHLQSH 97
+C F L H
Sbjct: 78 ECGKGFCQ----SRTLAVH 92
Score = 59.8 bits (146), Expect = 2e-13
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
H H+ EKP+KC+ C QS L +H+ H
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 38.6 bits (91), Expect = 3e-05
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 59 SSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
SS K +IC+ C F+ +L H
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTK----SYNLLIH 36
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 69.4 bits (171), Expect = 1e-17
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF 90
S + + + YKC+ C S + SS L H R HTG+KPY C +C F
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ---- 58
Query: 91 RNHLQSH 97
R+HL H
Sbjct: 59 RSHLIGH 65
Score = 57.1 bits (139), Expect = 1e-12
Identities = 24/45 (53%), Positives = 27/45 (60%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
S D+ KH R HTGEKPYKC+ C + Q S L H R HTG P
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 40.1 bits (95), Expect = 4e-06
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 58 QSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
S + E + + Y C +C +FS + L H
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSH----SSDLSKH 37
Score = 27.4 bits (62), Expect = 0.29
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 36 KHMRKHTGEKPYK 48
H R HTG P
Sbjct: 64 GHHRVHTGSGPSS 76
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 70.9 bits (175), Expect = 4e-17
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
Y C C +++ H R HTGEKPY C C S +Q + L+ H+R HTG+KPY C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 79 QCRDTFSSLYLFRNHLQSH 97
+C +FS H ++H
Sbjct: 138 ECGKSFSREDNLHTHQRTH 156
Score = 70.6 bits (174), Expect = 6e-17
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
+H R HTGEKPYKC C S + L H+R HTG+KPY C +C +FS R +L+
Sbjct: 39 EHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQ----RANLR 94
Query: 96 SH 97
+H
Sbjct: 95 AH 96
Score = 69.8 bits (172), Expect = 1e-16
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
Y C C ++ H R HTGEKPYKC C S ++ L H+R HTG+KPY C
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 79 QCRDTFSSLYLFRNHLQSH 97
+C +FS R+ L H
Sbjct: 166 ECGKSFSR----RDALNVH 180
Score = 69.0 bits (170), Expect = 3e-16
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
GEKPY C C S ++S L H+R HTG+KPY C +C +FS + L
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD----KKDLT 66
Query: 96 SH 97
H
Sbjct: 67 RH 68
Score = 55.9 bits (136), Expect = 3e-11
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
H R HTGEKPYKC C S ++ AL +H+R HTG K
Sbjct: 151 THQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 42.8 bits (102), Expect = 2e-06
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 57 TQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
SS+ G+KPY C +C +FS +HL H
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSR----SDHLAEH 40
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 67.9 bits (167), Expect = 7e-17
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
+ C C + S+ + H+R HTGEKP+ C+ C +S K H P +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILED 62
Query: 79 QCRDTFSSLYLFRNHLQSH 97
+ + S Y HL++
Sbjct: 63 KVEELLSKNY----HLENE 77
Score = 55.6 bits (135), Expect = 5e-12
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
KP++C C + ++S L H R HTG+KP+ C C F+ + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 47.5 bits (114), Expect = 6e-09
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE---RKHTGDK 73
+ C C S++ K+H P + +++ L+ +K G++
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 67.4 bits (166), Expect = 1e-16
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 85
H+ H+ +PY C+YC Q S +K H HTG+KP+ CQ C FS
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS 68
Score = 53.6 bits (130), Expect = 2e-11
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
DMKKH HTGEKP+KC+ C + +QSS L H RKHTG
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 45.9 bits (110), Expect = 3e-08
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+ C+ C S +SS L H H+ +PY CQ C F ++ ++ H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQ----KSDMKKH 48
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 67.5 bits (166), Expect = 1e-16
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFSSLYLFRNH 93
+H H+GEKPY C C + + H R H G KPYICQ C FS +H
Sbjct: 25 RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR----PDH 80
Query: 94 LQSH 97
L H
Sbjct: 81 LNGH 84
Score = 63.3 bits (155), Expect = 6e-15
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G CE C L H+ H+G+KPY C C F ++ + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR----KDRMSYH 54
Score = 45.6 bits (109), Expect = 4e-08
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTGDK 73
Y+C C + M H+R H G KPY C+ C ++ L H ++ H+G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 66.5 bits (163), Expect = 3e-16
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 31 SEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
S +K H+R HTGEKPYKC E C + +S L H RKHTG KP+ C C +FS
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89
Query: 89 LFRNHLQSH 97
H++ H
Sbjct: 90 HLALHMKRH 98
Score = 50.7 bits (122), Expect = 6e-10
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 70
S+++ +H RKHTG KP++C C S ++S L +H ++H
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 48.8 bits (117), Expect = 3e-09
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLY 88
S + R H + P C T+SS LK H R HTG+KPY C + C F+
Sbjct: 6 SGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 89 LFRNHLQSH 97
H + H
Sbjct: 62 ELTRHYRKH 70
Score = 25.3 bits (56), Expect = 2.2
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 55 SCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
S S R H D P C ++ + HL++H
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH 40
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 66.8 bits (164), Expect = 4e-16
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 19 YTCYACDYHTLMSEDMKKHMRK---HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
+ C C E++ +H + + E+ + C C + + L++H HTG+ PY
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 76 ICQQCRDTFSSLYLFRNHLQSH 97
C C F + LQSH
Sbjct: 96 KCSSCSQQFMQ----KKDLQSH 113
Score = 64.1 bits (157), Expect = 5e-15
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G +C C LK+H RKHTG+KP+ C +C + + +L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFR----KENLLEH 54
Score = 50.2 bits (121), Expect = 1e-09
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDK 73
+TC C +++ HM HTGE PYKC C+ Q L+ H + H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 65.6 bits (161), Expect = 5e-16
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKP 74
+ C S +K H+R HTGEKPY C + C + +S L H RKHTG +P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 75 YICQQCRDTFSSLYLFRNHLQSH 97
+ CQ+C FS +HL H
Sbjct: 66 FQCQKCDRAFSR----SDHLALH 84
Score = 52.9 bits (128), Expect = 6e-11
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 40 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFSSLYLFRNHLQSH 97
K T C + T+SS LK H R HTG+KPY C C F+ H + H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Score = 47.1 bits (113), Expect = 8e-09
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
S+++ +H RKHTG +P++C+ C + ++S L +H ++H
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 66.3 bits (163), Expect = 5e-16
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 85
+HM H G +PY C C L H + HTG KPY C C F
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76
Score = 64.4 bits (158), Expect = 3e-15
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 38 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+K Y C+ C S T S H H G +PY C C F ++HL H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKM----KHHLVGH 56
Score = 62.8 bits (154), Expect = 1e-14
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
Y C C M + HM+ HTG KPY+C CA + H + K Y
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95
Query: 79 QCRDTFS 85
+ +
Sbjct: 96 KAEQNTT 102
Score = 36.3 bits (85), Expect = 2e-04
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSAL 62
H + K Y+ + T++S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGP 107
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 65.6 bits (161), Expect = 5e-16
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG----DKPYICQQCRDTFSSLYLFR 91
R HTGEKPY C +C + Q L +H +++ ++C +C TF+ R
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR----R 60
Query: 92 NHLQSH 97
N + H
Sbjct: 61 NTMARH 66
Score = 60.6 bits (148), Expect = 4e-14
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE----KPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
Y C CD + + H +++ + C C + T+ + + H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 75 YICQQCRDTF 84
+ +
Sbjct: 76 VEGENSGPSS 85
Score = 38.3 bits (90), Expect = 3e-05
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 62 LKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
R HTG+KPY C C TF L H + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 65.5 bits (160), Expect = 6e-16
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHT---GDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G +CE C ++C Q ++L H+RKH + C+ C F H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 57.0 bits (138), Expect = 1e-12
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHT---GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
C C + + H RKH + CE+C + ++ H K
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 76 ICQQC 80
Q+
Sbjct: 68 APQES 72
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 64.8 bits (159), Expect = 7e-16
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
H+GEKPY C C + ++SS L H+R HTG+KPY C +C FS NH +
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Query: 96 SH 97
H
Sbjct: 64 IH 65
Score = 57.5 bits (140), Expect = 5e-13
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
+H R HTGEKPYKC C + +Q+S L H+R HT
Sbjct: 32 QHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 33.6 bits (78), Expect = 0.001
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 62 LKIHERKHTGDKPYICQQCRDTFS 85
H+G+KPY C +C FS
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFS 25
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 66.0 bits (162), Expect = 8e-16
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYI 76
+ C C + S +K+H HTGEKP++C + C + L+ H R HTGD+PY+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 77 C--QQCRDTFSSLYLFRNHLQSH 97
C C F+ ++H+ +H
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTH 117
Score = 64.1 bits (157), Expect = 6e-15
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLY 88
+ M+KH+ H G + + C C + +SS LK H+ HTG+KP+ C + C FS +
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDF 78
Query: 89 LFRNHLQSH 97
R H++ H
Sbjct: 79 NLRTHVRIH 87
Score = 57.9 bits (141), Expect = 1e-12
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPY 75
+++ H+R HTG++PY C + C QS+ LK H H K
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 45.6 bits (109), Expect = 9e-08
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 44 EKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+ C + C +SA++ H H G + ++C +C F + H H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 57
Score = 31.3 bits (72), Expect = 0.015
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 31 SEDMKKHMRKHTGEKPYK 48
S ++K H+ H K +
Sbjct: 107 STNLKSHILTHAKAKNNQ 124
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 66.5 bits (163), Expect = 1e-15
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 19 YTCYACDYHTLM-----SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTG 71
+ C+ + + HMR+HTGEKP+KC + C S ++ LK H R HTG
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 72 DKPYICQQ--CRDTFSSLYLFRNH 93
+KPY+C+ C FS+ H
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKH 118
Score = 65.3 bits (160), Expect = 4e-15
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIH-ERKHTGDKPYICQ--QCRDTFS 85
E++K H+R HTGEKPY CE+ C+ + + +S H R H+ +KPY+C+ C ++
Sbjct: 82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT 141
Query: 86 SLYLFRNHLQSH 97
R H+++
Sbjct: 142 DPSSLRKHVKTV 153
Score = 60.3 bits (147), Expect = 3e-13
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 19 YTCYACDYHTLMSEDMKKHMRK---HTGEKPYKCEYCAYSC-----TQSSALKIHERKHT 70
C E + H+ H K + C + S L +H R+HT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 71 GDKPYIC--QQCRDTFSSLYLFRNHLQSH 97
G+KP+ C + CR ++S L + HL+SH
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 49.9 bits (120), Expect = 3e-09
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 44 EKPYKCEYCAYSCTQSSALKIH---ERKHTGDKPYICQQCRDT-----FSSLYLFRNHLQ 95
E + + C+ L H E H K ++C + F + Y+ H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 96 SH 97
H
Sbjct: 61 RH 62
Score = 48.0 bits (115), Expect = 2e-08
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 31 SEDMKKHM-RKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTG 71
+ D KH R H+ EKPY C+ C T S+L+ H + G
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 62.6 bits (153), Expect = 6e-15
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 31 SEDMKKHMR-KHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTF 84
+ + H + +H +K + C C S LK H + H+ + YIC+ +
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 50.2 bits (121), Expect = 6e-10
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 41 HTGEKPYKCEY--CAYSCTQSSALKIHER-KHTGDKPYICQQ--CRDTFSSLYLFRNHLQ 95
+G C++ C + L H++ +H K + C + C +F+ + HL+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNF----KKHLK 57
Query: 96 SH 97
H
Sbjct: 58 EH 59
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 8e-15
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKCE C L +H++ HTG++P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 33.7 bits (78), Expect = 7e-04
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C++C ++S + +L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNS----KFNLDMH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-14
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C + T+ S L IH++ HTG++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C C F+ ++ L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTR----KSGLHIH 31
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 63.1 bits (154), Expect = 3e-14
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 34 MKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFSSLYL 89
+ H+R HTGEKP+ C + C +S LKIH+R HTG+KP+ C+ C F++
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 90 FRNHLQSH 97
+ H+ H
Sbjct: 138 RKKHMHVH 145
Score = 62.7 bits (153), Expect = 3e-14
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC 77
SE++K H R HTGEKP+KCE+ C SS K H HT DK
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 59.2 bits (144), Expect = 9e-13
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC---------TQSSALKIHERKH 69
+CD ++ H+ P + + Y L H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 70 TGDKPYIC--QQCRDTFSSLYLFRNHLQSH 97
TG+KP+ C C F+ + H ++H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 58.8 bits (143), Expect = 1e-12
Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 9/70 (12%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY---------ICQQCRDTFSSL 87
+ + C + + L H P C + +F +
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK 75
Query: 88 YLFRNHLQSH 97
Y NH++ H
Sbjct: 76 YKLVNHIRVH 85
Score = 34.2 bits (79), Expect = 0.002
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 57 TQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+ + C TFS+++ H+
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME 48
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.8 bits (146), Expect = 4e-14
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C C + S L +H+R HTG+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 35.9 bits (84), Expect = 9e-05
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C+ F++ +++L H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNT----KSNLMVH 31
Score = 30.1 bits (69), Expect = 0.016
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 36 KHMRKHTGEKPYKC 49
H R HTGE
Sbjct: 30 VHQRTHTGESGPSS 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-14
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
+GEKP+KCE C TQ+S L H+R HTG+KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.001
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KP+ C++C F+ + L SH
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQ----NSQLHSH 31
Score = 30.6 bits (70), Expect = 0.011
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
+ C C + + H R HTGEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 59.5 bits (145), Expect = 5e-14
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
TGEKPY C+ C S +S L H+R H+G+KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.001
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 65 HERKHTGDKPYICQQCRDTFS 85
TG+KPY C++C +F
Sbjct: 3 SGSSGTGEKPYNCKECGKSFR 23
Score = 31.8 bits (73), Expect = 0.003
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
Y C C + + KH R H+GEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 5e-14
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C TQ+S L H+R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 33.3 bits (77), Expect = 9e-04
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F+ +HL +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQ----NSHLANH 31
Score = 29.8 bits (68), Expect = 0.021
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 36 KHMRKHTGEKPYKCE 50
H R HTG KP
Sbjct: 30 NHQRIHTGVKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 5e-14
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C C S T+ S L +H++ HTG+KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 6e-04
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C C +F+ ++ L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTK----KSQLHVH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 59.5 bits (145), Expect = 5e-14
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKP+KC C ++ SAL +H + HTG+KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KP+ C +C FS R+ L H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSR----RSALNVH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 6e-14
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C S T S L+IH++ HTG++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 31.7 bits (73), Expect = 0.004
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C C +F+ R H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 31.4 bits (72), Expect = 0.006
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
Y C C ++ H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.4 bits (145), Expect = 6e-14
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TG KPY C C + S L IH R HTG+
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 2e-04
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG KPY+C +C F S +++L H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRS----KSYLIIH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 6e-14
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GEKPYKC C + L H+R HTG+K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 32.9 bits (76), Expect = 0.001
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KPY C +C + R L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKR----RLDLDFH 31
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 63.0 bits (154), Expect = 6e-14
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 36 KHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFR 91
K Y C + C + ++ L+ H KHTG+KP+ C++ C F+SL+
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 92 NHLQSH 97
H +H
Sbjct: 62 RHSLTH 67
Score = 62.2 bits (152), Expect = 1e-13
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 35 KKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLF 90
+ H+ KHTGEKP+ C+ C T L H HTG+K + C C F++
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM 90
Query: 91 RNHLQSH 97
+ H
Sbjct: 91 KKHFNRF 97
Score = 60.3 bits (147), Expect = 6e-13
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 35 KKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGD---KPYICQQCRDTFSSLYL 89
K H HT + PY+C E C + S LK HE+ H G K C T++
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL--Y 180
Query: 90 FRNHLQSH 97
++ + H
Sbjct: 181 LKHVAECH 188
Score = 56.8 bits (138), Expect = 1e-11
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 35 KKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDK--PYIC--QQCRDTFSSLY 88
+H HTGEK + C+ C T + +K H + K Y+C + C F
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK-- 118
Query: 89 LFRNHLQSH 97
N L+ H
Sbjct: 119 --HNQLKVH 125
Score = 56.1 bits (136), Expect = 2e-11
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 31 SEDMKKHMRKHTGEK--PYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTF 84
+MKKH + K Y C + C + + + LK+H+ HT PY C C F
Sbjct: 87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF 146
Query: 85 SSLYLFRNHLQSH 97
S + H + H
Sbjct: 147 SLPSRLKRHEKVH 159
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 9e-14
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
+GEKPY C+YC + S+ L H+R HTG+KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.001
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KPY+C C F L H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGL----SAELVRH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 9e-14
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C C S + S L +H+R HTG+ P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 32.9 bits (76), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C C +F ++ L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIK----KSQLHVH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 9e-14
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
GEK YKC+ C +QSS L+ H+R HTG+KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 2e-04
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G+K Y C C FS +HLQ+H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQ----SSHLQTH 31
Score = 29.8 bits (68), Expect = 0.020
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
Y C C S ++ H R HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
GEK +KC C +Q+S+L++H+ H G+KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.004
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G+K + C++C FS R H H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 31.4 bits (72), Expect = 0.005
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
+ C CD + ++ H H GEKP
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY CE C + S L+ H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.003
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C++C F + LQ H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIH----DSQLQEH 31
Score = 30.6 bits (70), Expect = 0.009
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
Y C C + +++H R HTGEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
TGEKPYKC+ C S S+L +H+R HTG+KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.002
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 65 HERKHTGDKPYICQQCRDTFS 85
TG+KPY C C +F
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFR 23
Score = 30.6 bits (70), Expect = 0.010
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
Y C C + H R HTGEKP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
G+K +KC C + TQSS+L +H+R HTG+KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.004
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 65 HERKHTGDKPYICQQCRDTFS 85
G K + C +C+ TF+
Sbjct: 3 SGSSGAGKKLFKCNECKKTFT 23
Score = 29.8 bits (68), Expect = 0.018
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 36 KHMRKHTGEKPYKC 49
H R HTGEKP
Sbjct: 30 VHQRIHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 19/42 (45%), Positives = 20/42 (47%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY C C S Q S L H R HTG+KP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 5e-04
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPYIC +C +F ++HL H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQ----KSHLNRH 31
Score = 30.2 bits (69), Expect = 0.013
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
+H R HTGEKP
Sbjct: 30 RHRRIHTGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKCE C L H HTG+KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.002
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C++C F R L +H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFIC----RRDLYTH 31
Score = 32.5 bits (75), Expect = 0.002
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
Y C C + D+ H HTGEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 58.7 bits (143), Expect = 1e-13
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
GEKPYKCE C Q + L+ H HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G+KPY C+ C F HL++H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQ----VAHLRAH 30
Score = 31.0 bits (71), Expect = 0.007
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPY 47
Y C C + ++ H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C + +Q+S L H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.002
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C FS + L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQ----TSKLARH 31
Score = 30.6 bits (70), Expect = 0.012
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
+H R HTGEKP
Sbjct: 30 RHQRIHTGEKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-13
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKP+KC+ C S S L H HT +KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 33.6 bits (78), Expect = 6e-04
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KP+ C C +F R+ L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCG----RSRLNRH 31
Score = 30.9 bits (71), Expect = 0.007
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 36 KHMRKHTGEKPYKCE 50
+H HT EKP
Sbjct: 30 RHSMVHTAEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-13
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKP++C C S + +S L +H+R HTG+ P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 32.5 bits (75), Expect = 0.002
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 65 HERKHTGDKPYICQQCRDTFS 85
TG+KP+ C++C +FS
Sbjct: 3 SGSSGTGEKPHECRECGKSFS 23
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-13
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
+GEKPYKC C + + + L H R HTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 32.1 bits (74), Expect = 0.003
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KPY C +C F HL H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHR----HTHLNEH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C + S+L IH+ H+G+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F + R+ L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRA----RSSLAIH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TG++PY+C C + S+L H R HTG+KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.001
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG +PY C +C F + ++ L H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKT----KSSLICH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C TQ+S L H HTG+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 9e-04
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F+ +HL H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQ----NSHLARH 31
Score = 29.8 bits (68), Expect = 0.019
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 36 KHMRKHTGEKPYKCE 50
+H HTGEKP
Sbjct: 30 RHRGIHTGEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKP++C C S + SS L H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KP+ C +C +FS + L +H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSI----SSQLATH 31
Score = 30.2 bits (69), Expect = 0.013
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
+ C C +S + H R HTGEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEK Y C+ C S +++ L HER H+G+KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+K Y C++C +FS L H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSR----APCLLKH 31
Score = 30.2 bits (69), Expect = 0.014
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 36 KHMRKHTGEKPYKC 49
KH R H+GEKP
Sbjct: 30 KHERLHSGEKPSGP 43
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 58.7 bits (143), Expect = 2e-13
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHER--KHTGDKPYICQQCRDTFSSLYLFRNHLQS 96
GE Y+C+ C+ T S H K Y C C F+ H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 97 H 97
Sbjct: 63 I 63
Score = 47.9 bits (115), Expect = 3e-09
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 19 YTCYACDYHTLMSEDMKKHMR--KHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
Y C C + +H K Y C +C T+ + H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 30.6 bits (70), Expect = 0.015
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 66 ERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
E G+ Y C+ C ++ ++ H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTH----ISNFCRH 29
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C C + + +L +H+R H+G KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 33.6 bits (78), Expect = 7e-04
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C C FS R L H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSH----RQSLSVH 31
Score = 29.8 bits (68), Expect = 0.021
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 36 KHMRKHTGEKPYKCE 50
H R H+G+KP
Sbjct: 30 VHQRIHSGKKPSGPS 44
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 58.4 bits (142), Expect = 2e-13
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQQCRDTFSS 86
+ KPY C+ C ++ L H ++ HT ++P+ CQ SS
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 30.6 bits (70), Expect = 0.013
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+ KPYICQ C FS +HL H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSR----PDHLNGH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGE+ Y+C C + Q S L +H+R H G+KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.002
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG++ Y C +C F ++ L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQ----KSTLSMH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TG KPY+C C + +Q+S L H+R HTG+KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 6e-04
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG KPY C +C FS + L H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQ----TSKLARH 31
Score = 30.6 bits (70), Expect = 0.011
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
+H R HTGEKP
Sbjct: 30 RHQRVHTGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GEKP++CE C TQ+S L H+R HTG+KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 4e-04
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KP+ C++C F+ +HL SH
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQ----NSHLHSH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TG KPY C CA + + S L +H+R HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 34.0 bits (79), Expect = 5e-04
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG KPY C QC TFS ++ L H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFS----LKSQLIVH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+ EKPYKCE C + L +H+R H G+K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 32.1 bits (74), Expect = 0.002
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+ +KPY C+ C ++ R +L H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNR----RLNLDMH 31
Score = 29.8 bits (68), Expect = 0.020
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 36 KHMRKHTGEKPYKC 49
H R H GEK
Sbjct: 30 MHQRVHMGEKTSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGE+P+KC C S QS+ L H+R HTG+KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.002
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG++P+ C +C +F HL H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQ----SAHLIQH 31
Score = 29.8 bits (68), Expect = 0.020
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
+H R HTGEKP
Sbjct: 30 QHQRIHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GEKPY C C + +Q S L H+R HTG+KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 1e-04
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KPY C +C TFS ++ L +H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQ----KSILSAH 31
Score = 30.6 bits (70), Expect = 0.010
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 36 KHMRKHTGEKPYKCE 50
H R HTGEKP
Sbjct: 30 AHQRTHTGEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
+GEKP+KCE C +S H+R H+G+KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.002
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KP+ C++C F + + SH
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYT----NSQCYSH 31
Score = 30.2 bits (69), Expect = 0.014
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
+ C C + H R H+GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C C + T S L H++ HTG+KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F+ R++L +H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTD----RSNLFTH 31
Score = 31.3 bits (72), Expect = 0.005
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
Y C C ++ H + HTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 57.9 bits (141), Expect = 3e-13
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C+ C + +Q++ L H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.001
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C++C FS HL H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQ----TTHLIQH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 57.5 bits (140), Expect = 3e-13
Identities = 16/39 (41%), Positives = 16/39 (41%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
GEKPY CE C LK H R HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 34.0 bits (79), Expect = 5e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G+KPY C+ C F L ++HL+ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 33.6 bits (78), Expect = 7e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPY 47
Y C C + +K H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GEKP+KC+ C + Q+ L H R HTG+KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 7e-04
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KP+ C++C F HL SH
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQ----NIHLASH 31
Score = 30.5 bits (70), Expect = 0.010
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
H+R HTGEKP
Sbjct: 30 SHLRIHTGEKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C+ C+ + TQ + L H++ HTG+KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 2e-04
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C+ C F+ + HL H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQ----KAHLAQH 31
Score = 29.8 bits (68), Expect = 0.017
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
+H + HTGEKP
Sbjct: 30 QHQKTHTGEKPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
G PYKC C S + L +H+R HT +KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G PY C QC +FS + L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSG----KLRLLVH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEK YKC C +++S L H++ HTG+KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.002
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+K Y C +C FS + L H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSR----NSQLSQH 31
Score = 30.2 bits (69), Expect = 0.016
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
+H + HTGEKP
Sbjct: 30 QHQKIHTGEKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
TGE+PY C C + T S L H++ HTG+KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.001
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG++PYIC C F+ R++L H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTD----RSNLIKH 31
Score = 30.5 bits (70), Expect = 0.009
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
Y C C ++ KH + HTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 57.6 bits (140), Expect = 3e-13
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
GEKPY+C+ C + +Q +L +H R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 34.9 bits (81), Expect = 2e-04
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G+KPY C QC FS + L H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQ----KGSLIVH 30
Score = 27.5 bits (62), Expect = 0.15
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPY 47
Y C C + H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C TQ+S L H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 33.3 bits (77), Expect = 9e-04
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F+ +HL H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQ----NSHLARH 31
Score = 29.8 bits (68), Expect = 0.020
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 36 KHMRKHTGEKPYKCE 50
+H R HTG KP
Sbjct: 30 RHRRVHTGGKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.6 bits (140), Expect = 3e-13
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
GEKPY C C + + S L IH R H+G+KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 7e-04
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G+KPY C +C FSS +++L H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSS----KSYLIIH 31
Score = 30.2 bits (69), Expect = 0.013
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 37 HMRKHTGEKPYKCE 50
HMR H+GEKP
Sbjct: 31 HMRTHSGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GEKPYKC C TQ+S L H R HTG+KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 8e-04
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KPY C +C F+ +HL +H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQ----NSHLTNH 31
Score = 29.8 bits (68), Expect = 0.018
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 36 KHMRKHTGEKPYKC 49
H R HTGEKP
Sbjct: 30 NHWRIHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 4e-13
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKP+KC C S Q L H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KP+ C +C +++ R HL H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQ----RVHLTQH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 4e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C C + + S+L H+ HTG KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 34.0 bits (79), Expect = 4e-04
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C QC FS R+ L +H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSV----RSSLTTH 31
Score = 29.8 bits (68), Expect = 0.021
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 36 KHMRKHTGEKPYKCE 50
H HTG+KP
Sbjct: 30 THQAIHTGKKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 4e-13
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY C C + S+ L H R HT +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 33.6 bits (78), Expect = 6e-04
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C C F HL H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVL----SAHLNQH 31
Score = 30.6 bits (70), Expect = 0.009
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 36 KHMRKHTGEKPYKCE 50
+H+R HT E
Sbjct: 30 QHLRVHTQETLSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 4e-13
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKP++C C + S L +H+R HTG+KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.002
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KP+ C +C+ F++ +++L H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNT----KSNLIVH 31
Score = 30.1 bits (69), Expect = 0.013
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
+ C C ++ H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 57.3 bits (139), Expect = 4e-13
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 37 HMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 78
TGEKP+ C + C + ++S L H R H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 33.8 bits (78), Expect = 7e-04
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 31 SEDMKKHMRKHTGEKPYKCE 50
S+++ +H R H+G KP
Sbjct: 27 SDELSRHRRSHSGVKPSGPS 46
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 58.0 bits (141), Expect = 5e-13
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLY 88
+K H HT + PY+C + C + S LK HE+ H G C +
Sbjct: 16 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 75
Query: 89 LFRNHLQ 95
L+ H+
Sbjct: 76 LYLKHVA 82
Score = 40.3 bits (95), Expect = 4e-06
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 47 YKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLYLFRNHLQSH 97
Y C + C + + + LK+H+ HT PY C C FS + H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 37.6 bits (88), Expect = 5e-05
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK 68
Y+ CD + +K+H + H G K + C++ + H +
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 5e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC+ C + SS L H H+G++P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 32.1 bits (74), Expect = 0.002
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY CQ C F +HL H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRV----SSHLVQH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 5e-13
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGE+ Y+C C + + S L +H+R HTG+KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.003
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 65 HERKHTGDKPYICQQCRDTFS 85
TG++ Y C +C F+
Sbjct: 3 SGSSGTGERHYECSECGKAFA 23
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 5e-13
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TG+KPYKC C TQ+S L H HTG+KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 6e-04
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG KPY C +C F+ +HL H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQ----NSHLARH 31
Score = 30.2 bits (69), Expect = 0.013
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 36 KHMRKHTGEKPYKCE 50
+H HTGEKP
Sbjct: 30 RHRGIHTGEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 57.2 bits (139), Expect = 5e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TG+KP++C +C S L H+R HTG+K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.8 bits (81), Expect = 3e-04
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG KP+ C C +F + + +L +H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRA----KGNLVTH 31
Score = 30.6 bits (70), Expect = 0.011
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
+ C C ++ H R HTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 5e-13
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY C C + T S L H++ HT KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 33.3 bits (77), Expect = 0.001
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPYIC +C F+ R++L H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTI----RSNLIKH 31
Score = 30.2 bits (69), Expect = 0.013
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 36 KHMRKHTGEKPYKCE 50
KH + HT +KP
Sbjct: 30 KHQKIHTKQKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 5e-13
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TG KPY C C + + S+L H+ HTG+KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.002
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG KPY+C +C FS + L +H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSV----YSSLTTH 31
Score = 31.0 bits (71), Expect = 0.007
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
Y C C + + H HTGEKP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.8 bits (138), Expect = 6e-13
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
GE+ ++C C Q+S H R HTG+KP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.012
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 65 HERKHTGDKPYICQQCRDTFS 85
G++ + C C F
Sbjct: 3 SGSSGHGERGHRCSDCGKFFL 23
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 6e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C C + Q + L H+R HTG+KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F+ + +L H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQ----KANLTQH 31
Score = 29.8 bits (68), Expect = 0.021
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 36 KHMRKHTGEKPYKC 49
+H R HTGEKP
Sbjct: 30 QHQRIHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-13
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
TG K ++C C + T+ S L +H++ HTG+KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.002
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG K + C +C F+ ++ L H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTR----KSTLSMH 31
Score = 29.8 bits (68), Expect = 0.023
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 36 KHMRKHTGEKPYKCE 50
H + HTGEKP
Sbjct: 30 MHQKIHTGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 6e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGE P+ C C T + L IH++ HTG++P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 32.5 bits (75), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+ P+IC +C F+ + +L H
Sbjct: 3 SGSSGTGENPFICSECGKVFTH----KTNLIIH 31
Score = 29.4 bits (67), Expect = 0.025
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
+ C C ++ H + HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 6e-13
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C TQ+S L H HTG+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F+ +HL H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQ----NSHLVRH 31
Score = 30.1 bits (69), Expect = 0.016
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 36 KHMRKHTGEKPYKCE 50
+H HTGEKP
Sbjct: 30 RHRGIHTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 7e-13
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPY+C+ C + + ++L H+R H+G+KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 34.4 bits (80), Expect = 4e-04
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 64 IHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C CR FS L H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSH----HASLTQH 31
Score = 30.2 bits (69), Expect = 0.013
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
+H R H+GEKP
Sbjct: 30 QHQRVHSGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 7e-13
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C + S L H+ HTG+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.003
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F + ++L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRA----HSNLTTH 31
Score = 30.6 bits (70), Expect = 0.011
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 36 KHMRKHTGEKPYKCE 50
H HTGEKP
Sbjct: 30 THQVIHTGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 8e-13
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C +S L H+R HTG+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F ++L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRH----NSYLSRH 31
Score = 30.6 bits (70), Expect = 0.011
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
Y C C + + +H R HTGEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 56.4 bits (137), Expect = 8e-13
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GEKPY+C C + S L +HER H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 33.7 bits (78), Expect = 6e-04
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KPY C +C F +++ L H
Sbjct: 3 SGSSGSGEKPYECNECGKAFI----WKSLLIVH 31
Score = 27.9 bits (63), Expect = 0.11
Identities = 4/14 (28%), Positives = 4/14 (28%)
Query: 36 KHMRKHTGEKPYKC 49
H R H G
Sbjct: 30 VHERTHAGVSGPSS 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 8e-13
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKP+ C C + + L H R HTG+KP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.001
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KP+ C C FS L H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSD----HIGLNQH 31
Score = 30.2 bits (69), Expect = 0.015
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
+H R HTGEKP
Sbjct: 30 QHRRIHTGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 9e-13
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C + +S+ H+R HTG +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 31.0 bits (71), Expect = 0.006
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGD----NSSCTQH 31
Score = 30.6 bits (70), Expect = 0.011
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 36 KHMRKHTGEKPYKCE 50
+H R HTG++P
Sbjct: 30 QHQRLHTGQRPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.3 bits (137), Expect = 1e-12
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKPYKC C ++S L H+ HTG+KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 8e-04
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KPY C +C F +HL H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRR----NSHLARH 31
Score = 30.5 bits (70), Expect = 0.010
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 36 KHMRKHTGEKPYKCE 50
+H HTGEKP
Sbjct: 30 RHQLIHTGEKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-12
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGE PY+C C + ++ L H+R H G+KP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.002
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+ PY C +C FS + L SH
Sbjct: 3 SGSSGTGENPYECHECGKAFSR----KYQLISH 31
Score = 29.8 bits (68), Expect = 0.019
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 36 KHMRKHTGEKPYKC 49
H R H GEKP
Sbjct: 30 SHQRTHAGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-12
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKP KC C + S L +H+R H DK
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 30.2 bits (69), Expect = 0.016
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KP C +C F H ++H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 29.1 bits (66), Expect = 0.036
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 36 KHMRKHTGEKPYKC 49
H R H +K
Sbjct: 30 MHQRTHVDDKHSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-12
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 79
+G+KPY+C+ C + Q L H+R HTG++
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 33.3 bits (77), Expect = 8e-04
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G KPY C++CR TF HL H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQ----IGHLNQH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 3e-12
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GE+P+KC C + S L H R H+ +K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 31.7 bits (73), Expect = 0.004
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G++P+ C +C F R+HL H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGR----RSHLAGH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.9 bits (133), Expect = 4e-12
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGEKP++C+ C + + S +L H R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 37.2 bits (87), Expect = 3e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+KP+ C++C FS HL+SH
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 31.0 bits (71), Expect = 0.007
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 49
+ C C + S + KH+R H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 6e-12
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
GEKPY+C C S + S L H HT +KP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 31.0 bits (71), Expect = 0.008
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G+KPY C +C +FS L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSG----SYRLTQH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 54.1 bits (131), Expect = 8e-12
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GEKP+ C C + + S L +H++ H +KP
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 30.2 bits (69), Expect = 0.016
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 37 HMRKHTGEKPYKC 49
H + H EKP
Sbjct: 29 HQQTHAEEKPSGP 41
Score = 28.3 bits (64), Expect = 0.082
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KP+ C C FSS H Q+H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 8e-12
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GEK + C+ C + SAL+IH+R H G+K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 29.9 bits (68), Expect = 0.017
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+K + C +C F + R H + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 26.8 bits (60), Expect = 0.33
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 50
+TC C + ++ H R H GEK
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 53.7 bits (130), Expect = 1e-11
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYIC 77
TG+KPY+C C + Q+++L H R HTG+KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 32.2 bits (74), Expect = 0.003
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 65 HERKHTGDKPYICQQCRDTFS 85
TG KPY C +C F
Sbjct: 3 SGSSGTGKKPYECIECGKAFI 23
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 52.9 bits (128), Expect = 2e-11
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GE PY+C C + + L H+R H G+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.0 bits (66), Expect = 0.034
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 36 KHMRKHTGEKPYKC 49
H R H GE
Sbjct: 28 SHQRTHAGESGPSS 41
Score = 28.2 bits (64), Expect = 0.068
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 66 ERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+ PY C +C F+ ++ L SH
Sbjct: 2 SSGSSGENPYECSECGKAFNR----KDQLISH 29
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 53.5 bits (129), Expect = 2e-11
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 37 HMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHL 94
+PY C E C ++S L H R HTG KP+ C+ C FS H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 95 QSH 97
++H
Sbjct: 70 RTH 72
Score = 49.6 bits (119), Expect = 8e-10
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 70
S+++ +H+R HTG+KP++C C + ++S L H R HT
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.9 bits (128), Expect = 2e-11
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+ K ++C C T S L H+R HTG+KP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.002
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+ K + C +C F+ ++HL H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFT----LKSHLNQH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.5 bits (127), Expect = 3e-11
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
TGE PY+C C ++ L H++ H+G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 30.9 bits (71), Expect = 0.007
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
TG+ PY C +C FS ++ L SH
Sbjct: 3 SGSSGTGENPYECCECGKVFSR----KDQLVSH 31
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 52.5 bits (127), Expect = 4e-11
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQ 95
+ + CE C + + LK H R HT +KPY C C F+ L H Q
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 48.3 bits (116), Expect = 2e-09
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDK 73
+ C C E +K+H R HT EKPY C C + T+ L H +K H+G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 4e-11
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GE+PY C C + + S L H ++H +K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 30.9 bits (71), Expect = 0.007
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G++PY C +C F +HL H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGR----HSHLIEH 31
Score = 29.8 bits (68), Expect = 0.019
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 36 KHMRKHTGEKPYKC 49
+H+++H EK
Sbjct: 30 EHLKRHFREKSSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 52.3 bits (126), Expect = 4e-11
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
GE PY C C S TQ +L +H+R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 31.9 bits (73), Expect = 0.003
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G+ PY+C QC +F+ R L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQ----RGSLAVH 30
Score = 27.6 bits (62), Expect = 0.11
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYK 48
Y C C + H R + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 51.4 bits (124), Expect = 6e-11
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
+G++ Y+C+ C S Q +L +HER HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 28.7 bits (65), Expect = 0.052
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 66 ERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G + Y CQ+C +F + L H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQ----KGSLTLH 29
Score = 25.6 bits (57), Expect = 0.83
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 36 KHMRKHTGEKPY 47
H R HTG P
Sbjct: 28 LHERIHTGSGPS 39
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 49.3 bits (117), Expect = 6e-10
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
KY C C +KKH+R HT +PY C YC +S L H + K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 43.6 bits (102), Expect = 1e-07
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 47 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
Y CE C + S LK H R HT +PY C C +F + H++S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 48.9 bits (117), Expect = 1e-09
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 31 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSS 86
S + + + C + C + +SS LK H R HTG+KP+ C C F+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 87 LYLFRNHLQSH 97
H ++H
Sbjct: 62 SDELSRHRRTH 72
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.4 bits (111), Expect = 6e-09
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
T K Y C C + T+ L H++ HT
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 32.6 bits (75), Expect = 0.002
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
T K Y C +C F+ ++ H + H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 43.5 bits (103), Expect = 9e-08
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 77
+GEKPY C C + + ++ L H++ HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.0 bits (68), Expect = 0.017
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G+KPY C +C++TFS N L H
Sbjct: 5 SSGEKPYSCAECKETFSD----NNRLVQH 29
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 42.2 bits (99), Expect = 3e-07
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
K CE C L H+ H+G+KPY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.4 bits (71), Expect = 0.005
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCA 53
+ C C + +H H+GEKPY +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 26.4 bits (58), Expect = 0.46
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 67 RKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
K C+ C F +Y H SH
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 43.6 bits (102), Expect = 4e-07
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH--ERKHTGDKPYICQQCRDTFSSLY 88
K + TG ++C+ C+ + L +H E H D + S
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63
Query: 89 LFRNHLQSHG 98
R+ L+ G
Sbjct: 64 RKRSLLEMEG 73
Score = 42.4 bits (99), Expect = 1e-06
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 18 KYTCYACDYHTLMSEDMKKHMR-----KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD 72
K+ C C ++ HM + + +S + +L E K
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 73 KPYICQQCRDTFSSLYLFRNHLQSH 97
K C C +F SL H+
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 37.4 bits (86), Expect = 1e-04
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 57 TQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSHG 98
+ S+ K++ TG + C+ C + +L H+ G
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
Score = 31.3 bits (70), Expect = 0.020
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH--ERKHTGDKPY 75
+ + + K +K KC YC +S L +H + KH
Sbjct: 52 TDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 42.3 bits (99), Expect = 7e-07
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF 90
S K + H G++ KC C + S + K +C++CR
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAAL 55
Query: 91 RNHLQSH 97
+
Sbjct: 56 NKDEGNE 62
Score = 34.3 bits (78), Expect = 9e-04
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
+ K CE C Q +AL E +G K
Sbjct: 30 RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 23.5 bits (50), Expect = 8.2
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEKPY 47
C C + + K +G+K
Sbjct: 39 TPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.8 bits (96), Expect = 9e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
R TG KP++C C S ++S L +H ++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 32.3 bits (74), Expect = 0.002
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 65 HERKHTGDKPYICQQCRDTFS 85
R TG KP+ C C +FS
Sbjct: 2 STRGSTGIKPFQCPDCDRSFS 22
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 41.0 bits (96), Expect = 1e-06
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
GE P+KC C TQ + L HER H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 29.8 bits (67), Expect = 0.019
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
G+ P+ C +C F+ H ++H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 40.7 bits (95), Expect = 4e-06
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 9/68 (13%)
Query: 19 YTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCEYCAY--------SCTQSSALKIHERKH 69
+CD ++ H+ H G C + S L H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 70 TGDKPYIC 77
TG+K
Sbjct: 86 TGEKSGPS 93
Score = 34.2 bits (78), Expect = 0.001
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDKPYI--------CQQCRDTFSSLYLFR 91
+ + C + + L H +H G C + +F + Y
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 92 NHLQSH 97
NH++ H
Sbjct: 80 NHIRVH 85
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.7 bits (76), Expect = 6e-04
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
+ KPYKC C+Y+ + L +H RKHTG+K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 30.6 bits (68), Expect = 0.008
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEK 45
Y C C Y + + ++ H+RKHTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 36.0 bits (82), Expect = 0.001
Identities = 12/57 (21%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 49 CEYCAYSCTQSSALKIHERKHTGDKP-------YICQQCRDTFSSLYLFRNHLQSHG 98
+SA+ G P Y C C S H+ SHG
Sbjct: 148 KPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.0 bits (77), Expect = 0.002
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 1 MYHCKTCSTLSRPNISYKYTCYACDYHTLMSEDMKKHMR-KHTG---EKPYKCEYCAYSC 56
M H + Y C C + T H+ +H Y C C +
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 57 TQSSALKIHERK-HTGDKPYICQ 78
+ AL H K H G++ +
Sbjct: 61 KRYDALSEHNLKYHPGEENFKLT 83
Score = 32.4 bits (73), Expect = 0.006
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTG---DKPYICQQCRDTFSSLYLFR 91
+ + E Y+C+YC + + H + +H + Y+C +C
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 92 NHLQSH 97
H +
Sbjct: 68 EHNLKY 73
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 31.4 bits (72), Expect = 0.003
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 45 KPYKC--EYCAYSCTQSSALKIHERKHTGDK 73
+P+ C YC T+S L+ H+R HTG+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.4 bits (59), Expect = 0.33
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 31 SEDMKKHMRKHTGEK 45
S+++++H R HTGEK
Sbjct: 17 SDELQRHKRTHTGEK 31
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 33.4 bits (75), Expect = 0.003
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 27 HTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSS 86
L + + C C + S +LK H R +C C+ F+S
Sbjct: 55 QLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTS 112
Query: 87 LYLFRNHLQSH 97
+H+
Sbjct: 113 TDSALDHVCKK 123
Score = 30.3 bits (67), Expect = 0.046
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 4/79 (5%)
Query: 23 ACDYHTLMSEDMKKHMRKHTGEKPYKC----EYCAYSCTQSSALKIHERKHTGDKPYICQ 78
H + E + H ++ + S+ ++C
Sbjct: 19 GIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCP 78
Query: 79 QCRDTFSSLYLFRNHLQSH 97
C FSS + H++
Sbjct: 79 LCLMPFSSSVSLKQHIRYT 97
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 30.8 bits (70), Expect = 0.007
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 42 TGEKPYKCEY--CAYSCTQSSALKIHERKHTGDK 73
+K + C C ++S L+ H R HTG++
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.6 bits (67), Expect = 0.016
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
+ + CE C + + LK H R HT +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.0 bits (55), Expect = 1.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEK 45
+ C C E +K+H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 29.3 bits (65), Expect = 0.027
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
KPY C +C AL+ H R HTG+K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 30.6 bits (68), Expect = 0.028
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 78
Y C C+ + H R C YC+ + HE K K C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCE-YKKLTCL 73
Query: 79 QCRDTFSSLYLFRNH 93
+C TF S + H
Sbjct: 74 ECMRTFKSSFSIWRH 88
Score = 27.9 bits (61), Expect = 0.29
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 35 KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHL 94
++ Y+C C + HER +C C F S L + H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE 62
Query: 95 QSH 97
Sbjct: 63 SKC 65
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 27.0 bits (59), Expect = 0.18
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
KP +C C + TQ+S+L H R+HTG+K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.2 bits (59), Expect = 0.19
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
KP+KC C Y+ S LK H +H+ +K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 23.7 bits (50), Expect = 3.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEK 45
+ C C+Y T ++K HM +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.2 bits (62), Expect = 0.38
Identities = 7/49 (14%), Positives = 12/49 (24%)
Query: 49 CEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
E S IH G+K ++ + R +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 24.8 bits (53), Expect = 6.4
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 21 CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
Y H++ E + H GEK + E L+ +
Sbjct: 185 DYMKRLHSMSQETI--HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 25.9 bits (56), Expect = 0.62
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHT 70
+G++P+ C C + T + H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 23.2 bits (49), Expect = 5.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G +P++C+ C F++ HL+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.9 bits (56), Expect = 0.64
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHT 70
EK +KC C + + S L HER HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.8 bits (58), Expect = 0.83
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 18 KYTCYACDYHTLMS-EDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 74
+C C + E +KKHM ++ + C +C + +K H + P
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase;
2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A*
3chu_A 2jcd_A
Length = 336
Score = 27.1 bits (59), Expect = 0.85
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 25 DYHTLMSEDMKKHMRKHTGEKPY 47
+HT M R+
Sbjct: 137 SFHTYMHMLAIDRTRELRKISER 159
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (54), Expect = 1.3
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
+ EK ++C C Q +L H+ H G K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.2 bits (57), Expect = 1.5
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 48 KCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
C C + KI ER GD +C C
Sbjct: 23 TCPEC-----KVYPPKIVERFSEGD--VVCALC 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.8
Identities = 10/133 (7%), Positives = 28/133 (21%), Gaps = 39/133 (29%)
Query: 1 MYHCKTCSTLSRPNISYKYTCYAC--DYHTLMSEDMKKHMR------------KHTGEKP 46
+ S + + + + + + + H P
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 47 ----YKCEYCAY-----SCTQSSAL-------------KIHERKHTGDKPYICQQCRDTF 84
Y + + + L KI +H +T
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDSTAWNASGSILNTL 524
Query: 85 SSLYLFRNHLQSH 97
L ++ ++ +
Sbjct: 525 QQLKFYKPYICDN 537
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.5 bits (52), Expect = 2.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
+GEKPY C C + + H R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.0 bits (51), Expect = 3.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
K + CEYC +L+ H R HT +K
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 25.1 bits (54), Expect = 4.3
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 13/65 (20%)
Query: 16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
+ A H + +K + C C Y IH+ G+
Sbjct: 141 VFTRAKLAESVHAERYLAAYNDIDAPDDDKFHLCPICGY---------IHK----GEDFE 187
Query: 76 ICQQC 80
C C
Sbjct: 188 KCPIC 192
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 24.1 bits (52), Expect = 4.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 62 LKIHERKHTGDKPYICQQCRDTFSSL 87
++ ER T + C C TF+ L
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTDL 27
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 24.2 bits (52), Expect = 5.3
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 31 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 80
S H + C++C + LK HE + G + +C C
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSI-LKLKEHE-DYCGARTELCGNC 49
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 24.7 bits (54), Expect = 6.0
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC 52
C C + K + +H + KC+ C
Sbjct: 135 AHCHCIGCG-KVYPPQVFKSKLAEHPIKDFVKCDVC 169
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 23.3 bits (49), Expect = 6.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 45 KPYKCEYCAYSCTQSSALKIH-ERKHTGDK 73
K Y+C+YC + SS LK H + KH+ +K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 24.6 bits (53), Expect = 6.5
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 17 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYC 52
C C + K + +H + KC+ C
Sbjct: 143 AHCHCIGCG-KVYPPQVFKSKLAEHPIKDFVKCDVC 177
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 24.4 bits (53), Expect = 7.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 75 YICQQCRDTFSSLYLFRNHLQSH 97
Y C+ +D F SL+ F L
Sbjct: 159 YCCRNPKDMFVSLWHFGKKLAPE 181
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 22.9 bits (49), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 72 DKPYIC--QQCRDTFSSLYLFRNHLQSH 97
DK + C C TF Y R+H+Q+H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.132 0.444
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,412,074
Number of extensions: 67794
Number of successful extensions: 996
Number of sequences better than 10.0: 1
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 475
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)