RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3500
(98 letters)
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 48.6 bits (116), Expect = 4e-10
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 36 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
+ + + YKC+ C S + SS L H R HTG
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 32.4 bits (74), Expect = 6e-04
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
E + + Y C +C +FS H ++H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 25.1 bits (55), Expect = 0.34
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE 44
Y C C S D+ KH R HTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 46.8 bits (112), Expect = 1e-09
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
H+GEKPY C C + ++SS L H+R HTG
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 30.7 bits (70), Expect = 0.003
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
H+G+KPY C +C FS + H + H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 27.6 bits (62), Expect = 0.046
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE 44
Y C C S + +H R HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 45.8 bits (109), Expect = 5e-09
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 42 TGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQ 78
+ KPY C+ C ++ L H ++ HT ++P+ CQ
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 35.0 bits (81), Expect = 8e-05
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 19 YTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCE 50
Y C +C + + H+++ HT E+P+KC+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 24.2 bits (53), Expect = 0.93
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 70 TGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+ KPYICQ C FS H++
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQV 28
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 45.1 bits (107), Expect = 7e-09
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 37 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
R TG KP++C C S ++S L +H ++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 32.8 bits (75), Expect = 5e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 65 HERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
R TG KP+ C C +FS H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.0 bits (107), Expect = 8e-09
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
R H+GEKPY+C C TQS +K+H + +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 32.3 bits (74), Expect = 6e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 67 RKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
R H+G+KPY C C F+ + H+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 21.9 bits (47), Expect = 6.9
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEK 45
Y CY C S MK H+ + E
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 43.9 bits (104), Expect = 2e-08
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 39 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 73
R HTGEKPY C +C + Q L +H +++
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 30.8 bits (70), Expect = 0.003
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 67 RKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
R HTG+KPY C C TF L H + +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 24.2 bits (53), Expect = 0.70
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEK 45
Y C CD + + H +++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 39.4 bits (92), Expect = 1e-06
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 41 HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 71
+G++P+ C C + T + H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 27.8 bits (62), Expect = 0.038
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 69 HTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+G +P++C+ C F++ HL+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 21.6 bits (46), Expect = 8.2
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE 44
+ C C + +H++ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTDT 33
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 39.1 bits (92), Expect = 1e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
+ + CE C + + LK H R HT +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.0 bits (63), Expect = 0.026
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEK 45
+ C C E +K+H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 21.8 bits (47), Expect = 5.3
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 73 KPYICQQCRDTFSSLYLFRNHLQSH 97
+ ++C+ C F+ + H +SH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 38.7 bits (91), Expect = 2e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTG 71
+KP++C C + ++S L H R HTG
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 23.3 bits (51), Expect = 1.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTG 43
+ C C + S+ + H+R HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 22.2 bits (48), Expect = 3.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 73 KPYICQQCRDTFSSLYLFRNHLQSH 97
KP+ C+ C FS H+++H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 38.1 bits (89), Expect = 4e-06
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDK 73
K + C C +S L H + H K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 28.8 bits (65), Expect = 0.014
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGEK 45
+ C C + S+ + KH++ H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 21.1 bits (45), Expect = 9.5
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 73 KPYICQQCRDTFSSLYLFRNHLQSH 97
K + C +C F H+++H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 37.4 bits (87), Expect = 7e-06
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 16 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY 51
S+ AC + +K+HM+ H+ + Y CE+
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 35.1 bits (81), Expect = 6e-05
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 47 YKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 78
+ C C S LK H + H+ + YIC+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 37.2 bits (86), Expect = 1e-05
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 36 KHMRKHTGEKPYKCEYCA--YSCTQSSALKIHERKHTGDK 73
K +K ++C + + + ++ H + H D+
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.6 bits (61), Expect = 0.063
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 17 YKYTCYACDYHTLMSEDMKKHMRKHTGEK 45
++ C +++ H++ H ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 23.7 bits (51), Expect = 1.8
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 65 HERKHTGDKPYICQQCR--DTFSSLYLFRNHLQSH 97
K DK + C TF Y R+H+Q+H
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 34.6 bits (80), Expect = 8e-05
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTGDK 73
+P+ C + C T+S L+ H+R HTG+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.5 bits (59), Expect = 0.088
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 17 YKYTCYACDYHTLMSEDMKKHMRKHTGEK 45
+ T C S+++++H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 34.7 bits (79), Expect = 1e-04
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNHLQSH 97
+K Y C+ C S T S H H G +PY C C F + H++ H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 30.4 bits (68), Expect = 0.005
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 24 CDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 69
C +HM H G +PY C C L H + H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 34.2 bits (78), Expect = 1e-04
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 44 EKPYKCEYCAYSCTQSSALKIHERKHTGD 72
E+P+KC+ C Y+ SS L +H R HTGD
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 21.5 bits (45), Expect = 8.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 19 YTCYACDYHTLMSEDMKKHMRKHTGE 44
+ C C Y + S + H+R HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 33.5 bits (77), Expect = 3e-04
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTGD 72
KP+KC + C S ++ LK H R HTG+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 22.7 bits (49), Expect = 2.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 17 YKYTCYACDYHTLMSEDMKKHMRKHTGE 44
+K T C E++K H+R HTGE
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTGE 30
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 32.3 bits (74), Expect = 6e-04
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTG 71
+PY C C ++S+ L H R HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 32.2 bits (74), Expect = 8e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHT 70
KPYKC C + +Q+S L H+R HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 31.9 bits (73), Expect = 8e-04
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 44 EKPYKCEY--CAYSCTQSSALKIHERKHTG 71
++PY C++ C + ++ L H++ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 31.2 bits (71), Expect = 0.002
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHTGD 72
KP++C + C + L+ H R HTGD
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.8 bits (61), Expect = 0.033
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 46 PYKCEYCAYSCTQSSALKIHERKHTGD 72
P KC C+YSC+ +AL+IHER H D
Sbjct: 2 PEKCSECSYSCSSKAALRIHERIHCTD 28
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.7 bits (62), Expect = 0.035
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 45 KPYKCEY--CAYSCTQSSALKIHERKHT 70
+PY C + C QS+ LK H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.7 bits (58), Expect = 0.086
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHT 70
KPYKC+ C Y+ SS+L H R H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 26.4 bits (58), Expect = 0.13
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 47 YKCEYCAYSCTQSSALKIHERKHTGDK 73
Y CE C + S LK H R HT +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
Score = 22.1 bits (47), Expect = 5.0
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 18 KYTCYACDYHTLMSEDMKKHMRKHTGEK 45
KY C C +KKH+R HT +
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.1 bits (57), Expect = 0.13
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGD 72
+P+KC YC++ Q S L H +K GD
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD 28
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.7 bits (53), Expect = 0.49
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 45 KPYKCEYCAYSCTQSSALKIH-ERKHTGDK 73
K Y+C+YC + SS LK H + KH+ +K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 22.7 bits (48), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 46 PYKCEYCAYSCTQSSALKIHERKHTG 71
P+KCE C ++ LK H R HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.1 bits (47), Expect = 4.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 44 EKPYKCEYCAYSCTQSSALKIHERKH 69
EKP+ C+ C +S K H + H
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 21.6 bits (45), Expect = 8.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 45 KPYKCEYCAYSCTQSSALKIHERKHTGDKPY 75
K CE C L H+ H+G+KPY
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.132 0.444
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,458
Number of extensions: 15761
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 139
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)