BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3507
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C +D+ +H R HTGEKPYKC C S +Q + L+ H+R HTG+KPY C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 115 QCRDTFSSLYLFRNRLQSH 133
+C +FS L R ++H
Sbjct: 110 ECGKSFSQLAHLRAHQRTH 128
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C S+ + +H R HTGEKPYKC C S + L H+R HTG+KPY C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 115 QCRDTFSSLYLFRNRLQSH 133
+C +FS R ++H
Sbjct: 82 ECGKSFSQRANLRAHQRTH 100
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C +++ H R HTGEKPY C C S +Q + L+ H+R HTG+KPY C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 115 QCRDTFS 121
+C +FS
Sbjct: 138 ECGKSFS 144
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C ++ H R HTGEKPYKC C S ++ L H+R HTG+KPY C
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 115 QCRDTFS 121
+C +FS
Sbjct: 166 ECGKSFS 172
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
Y C C +++ H R HTGEKPYKC C S ++ AL +H+R HTG K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 79 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
GEKPY C C S ++S L H+R HTG+KPY C +C +FS
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C S +++KH R HTGEKPYKC C S +QSS L+ H+R HTG+KPY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 115 QCRDTFS-SLYLFRNR 129
+C +FS S +L R++
Sbjct: 65 ECGKSFSRSDHLSRHQ 80
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
EKPYKC C S +QSS L+ H+R HTG+KPY C +C +FS + ++H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
Y C C S D++KH R HTGEKPYKC C S ++S L H+R H K
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
+CD ++ H+R HTG+KP++C C + +Q ++L H R HTG+KP+ C C
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 119 TFSSLY 124
F++L+
Sbjct: 71 KFATLH 76
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC----TQSSALKIHERK 104
+ C C + + H+R HTGEKP+ C+ C T++ KIH R+
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQ 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
S +K H+R HTGEKPY C++ C + +S L H RKHTG +P+ CQ+C FS
Sbjct: 21 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 77
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
C + S+++ +H RKHTG +P++C+ C + ++S L +H ++H
Sbjct: 43 GCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
Y C CDY S + KH+R H+ E+P+KC+ C Y+ SS L +H R HTGD
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
S + C C + +K HMR HTG KPYKC+ C Y+ SS+L H R H+ ++P+
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 112 ICQQCRDTFSSLYLFRNRLQ 131
CQ C Y RN Q
Sbjct: 66 KCQIC------PYASRNSSQ 79
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
S +K H+R HTGEKPY C++ C + +S L H RKHTG +P+ CQ+C FS
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 76
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
C + S+++ +H RKHTG +P++C+ C + ++S L +H ++H
Sbjct: 42 GCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
+CD S D+ +H+R HTG+KP++C C + ++S L H R HTG+KP+ C C
Sbjct: 11 SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
F+
Sbjct: 71 KFA 73
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ C C + S+ + H+R HTGEKP+ C+ C +S K H + H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 80 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
E+PY C E C ++S+ L H R HTG KP+ C+ C FS
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFS 45
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
+CD ++ H+R HTG+KP++C C + +Q + L H R HTG+KP+ C C
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 119 TFSSLY 124
F++L+
Sbjct: 71 KFATLH 76
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 80 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
E+PY C E C +Q + L H R HTG KP+ C+ C FS +++H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSC----TQSSALKIHERK 104
+ C C + + +H+R HTGEKP+ C+ C T+ KIH R+
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQ 88
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 44 STVSHPNISYKYTCYACDYHT-----LMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSS 96
S S P++ + Y CDY S +K H+R HTGEKPYKC E C + +S
Sbjct: 3 SGSSGPDLEKRRIHY-CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 97 ALKIHERKHTGDKPYICQQCRDTFS 121
L H RKHTG KP+ C C +FS
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFS 86
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
YK T CD+ S+++ +H RKHTG KP++C C S ++S L +H ++H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
+CD S+++ +H+R HTG+KP++C C + ++S L H R HTG+KP+ C C
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 119 TFS 121
F+
Sbjct: 70 KFA 72
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
+ C C + S+ + H+R HTGEKP+ C+ C +S K H + H
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 80 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
E+PY C E C ++S L H R HTG KP+ C+ C FS
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 44
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
+CD S+++ +H+R HTG+KP++C C + ++S L H R HTG+KP+ C C
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
F+
Sbjct: 71 KFA 73
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
+ C C + S+ + H+R HTGEKP+ C+ C +S K H + H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 80 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
E+PY C E C ++S L H R HTG KP+ C+ C FS
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 45
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
+CD S+++ +H+R HTG+KP++C C + ++S L H R HTG+KP+ C C
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
F+
Sbjct: 71 KFA 73
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ C C + S+ + H+R HTGEKP+ C+ C +S K H + H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 80 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
E+PY C E C ++S L H R HTG KP+ C+ C FS
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 45
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQC 116
C+ ++ H RKHTGEKPY+C++ C ++S LK H+R+HTG KP+ C+ C
Sbjct: 13 GCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 117 RDTFS 121
+ FS
Sbjct: 73 QRKFS 77
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 58 YACDYHT-----LMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYI 112
Y CD+ S+ +K+H R+HTG KP++C+ C ++S LK H R HTG+KP+
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 113 CQ 114
C+
Sbjct: 97 CR 98
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 105
+ C C S+ +K H R HTGEKP+ C + C +S L H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
+CD S ++ +H+R HTG+KP++C C + ++S L H R HTG+KP+ C C
Sbjct: 11 SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
F+
Sbjct: 71 KFA 73
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ C C + S+ + H+R HTGEKP+ C+ C +S K H + H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 80 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
E+PY C E C ++S+ L H R HTG KP+ C+ C FS
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFS 45
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
+CD S ++ +H+R HTG+KP++C C + ++S L H R HTG+KP+ C C
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
F+
Sbjct: 71 KFA 73
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ C C + S+ + H+R HTGEKP+ C+ C +S K H + H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 80 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
E+PY C E C + SS L H R HTG KP+ C+ C FS
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFS 45
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRD 118
+CD S + +H+R HTG+KP++C C + ++S L H R HTG+KP+ C C
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 119 TFS 121
F+
Sbjct: 71 KFA 73
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 80 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
E+PY C E C +QS +L H R HTG KP+ C+ C FS
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFS 45
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ C C + S+ + H+R HTGEKP+ C+ C +S K H + H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 31/53 (58%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
Y C C DMKKH HTGEKP+KC+ C + +QSS L H RKHTG
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
+ C C S + H+ H+ +PY C+YC Q S +K H HTG+KP+ CQ
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 115 QCRDTFS 121
C FS
Sbjct: 62 VCGKAFS 68
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%)
Query: 54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+Y C C S D+ KH R HTGEKPYKC+ C + Q S L H R HTG P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF 120
+ YKC+ C S + SS L H R HTG+KPY C +C F
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 73 HMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSS 122
HMR+HTGEKP+KC E C S ++ LK H R HTG+KPY+C+ C FS+
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN 111
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 68 EDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHE-RKHTGDKPYICQ 114
E++K H+R HTGEKPY CE+ C+ + + +S H+ R H+ +KPY+C+
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK 132
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 11/55 (20%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLYLFRNRLQSH 133
+P+K +Y L +H R+HTG+KP+ C + CR ++S L + L+SH
Sbjct: 47 RPFKAQY---------MLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYI 112
+ C C + S +K+H HTGEKP++C E C + L+ H R HTGD+PY+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 113 C--QQCRDTFSSLYLFRNRLQSHG 134
C C F+ ++ + +H
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHA 118
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 70 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFSSLYLFR 127
M+KH+ H G + + C C + +SS LK H+ HTG+KP+ C + C FS + R
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 128 NRLQSH 133
++ H
Sbjct: 82 THVRIH 87
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIH 101
++ T C + +++ H+R HTG++PY C + C QS+ LK H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 73 HMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 114
H+R HTGEKP+ C + C +S LKIH+R HTG+KP+ C+
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDK 109
SE++K H R HTGEKP+KCE+ C SS K H HT DK
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 70 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFS 121
+ +H H+GEKPY C C + + H R H G KPYICQ C FS
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTG 107
Y+C C + M H+R H G KPY C+ C ++ L H ++ H+G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF 120
+G CE C L H+ H+G+KPY C C F
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF 45
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
Y C C S + +H R HTGEKPYKC C + +Q+S L H+R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
EKPY C C + ++SS L H+R HTG+KPY C +C FS
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
H+R HTGEKPYKCE+C Y+ Q ++L+ H +H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 79 GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
G +C YC + L IH R HTG+KPY C+ C + R L+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
++ C C H S ++ H R HT E+PY C+ C + + L+ H H+ +KP+ C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 114 QQCRDTF 120
Q+C F
Sbjct: 77 QECGKGF 83
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF 120
+K + C++C T+S L IHER HT ++PY C C F
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
YTC C + ++ H H+ EKP+KC+ C QS L +H+ H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
Y C C ++ H HTGEKPY+C C + + LK H R H+G+KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+KPYKC+ C S L H+ HTG+KPY C C F+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN 56
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
+CD S+++ +H+R HTG+KP++C C + ++S L H R HT
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 81 KPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+PY C E C ++S L H R HTG KP+ C+ C FS
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+GEKPY+C+ C S +Q +L +HER HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP+KCE C TQ+S L H+R HTG+KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
+GEKPY C+ C + TQSS L IH R HTG+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 106 TGDKPYICQQCRDTFS 121
+G+KPY+CQ+C F+
Sbjct: 6 SGEKPYVCQECGKAFT 21
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C + +Q+S L H+R HTG+KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
Y C C + + +H R HTGEKP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP++CE C TQ+S L H+R HTG+KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
KP++C C + ++S L H R HTG+KP+ C C F+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH 101
+ C C + S+ + H+R HTGEKP+ C+ C +S K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC+ C S S+L +H+R HTG+KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGD 108
+ C C E +K+H R HT EKPY C C + T+ L H +K H+G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 83 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLF 126
+ CE C + + LK H R HT +KPY C C F+ L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLL 46
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY C C + +Q S L H+R HTG+KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C C S T+ S L +H++ HTG+KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C TQ+S L H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C + +++H H+ EK Y C YC + HE HTG++ Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 115 QCRDTFSSLYLFRNRLQS 132
C +F + + ++S
Sbjct: 83 ACGKSFINYQFMSSHIKS 100
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCA-----YSCTQSSALKIHERKHTGD 108
KY C C+ ++E KH HTGE+ Y+C C Y S +H + +GD
Sbjct: 50 KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGD 109
Query: 109 -KPYICQQCR 117
K Y CR
Sbjct: 110 SKLYRLHPCR 119
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 57 CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK---HTGDKPYIC 113
C C L +K H RKHTGEKP++C C + L HE + + ++ + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 114 QQCRDTFSSLYLFRNRLQSH 133
C++TF R + SH
Sbjct: 70 SVCQETFRRRMELRLHMVSH 89
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTG 107
+TC C +++ HM HTGE PYKC C+ Q L+ H K H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
+G +C C LK+H RKHTG+KP+ C +C
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKC 41
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C TQ+S L H R HTG+KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+K +KC C + TQSS+L +H+R HTG+KP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C TQ+S L H+R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQ 131
+HM H G +PY C C L H + HTG KPY C C F ++R+
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF----MWRDSFH 82
Query: 132 SH 133
H
Sbjct: 83 RH 84
Score = 32.3 bits (72), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCA 89
Y C C M + HM+ HTG KPY+C CA
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTF 120
+G+K Y C+ C S T S H H G +PY C C F
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF 47
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
T EKP++C+ C S Q SAL H HTG+KP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP+KC C ++ SAL +H + HTG+KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY CE C + S L+ H+R HTG+KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
Y C C + +++H R HTGEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EK YKC+ C +QSS L+ H+R HTG+KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
Y C C S ++ H R HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP++C C S + SS L H+R HTG+KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
+ C C +S + H R HTGEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY C+YC + S+ L H+R HTG+KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
Y C C +S ++ +H R HTGEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
KPY+C C + +Q+S L H+R HTG+KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
Y C C + + +H R HTGEKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
EKPYKC C + T+ S L IH++ HTG++
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C+ C+ + TQ + L H++ HTG+KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C+ C + +Q +L +H R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KPYKC C+Y+ + L +H RKHTG+K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEK 81
Y C C Y + + ++ H+RKHTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
E+P+KC C S QS+ L H+R HTG+KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
+ C C + S + +H R HTGEKP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 70 MKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQ 114
++ H+ KHTGEKP+ C E C T L H HTG+K + C
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 81 KPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLY 124
K Y C + C + ++ L+ H KHTG+KP+ C++ C F+SL+
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLH 49
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C C + Q + L H+R HTG+KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
Y C C ++ +H R HTGEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C+ C + +Q++ L H+R HTG+KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C C S + S L +H+R HTG+ P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C + S+L IH+ H+G+KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
EKPYKC C S T S L+IH++ HTG++
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY C C S Q S L H R HTG+KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
Y C C + + +H R HTGEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C TQ+S L H HTG+KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+G++ Y+C+ C S Q +L +HER HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 49 PNISYKYTCYACDYHTLMSEDMK--KHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERK 104
P + +Y C D +++ K H+ KHTGEKP+ C E C T L H
Sbjct: 7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66
Query: 105 HTGDKPYICQ 114
HTG+K + C
Sbjct: 67 HTGEKNFTCD 76
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 81 KPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLY 124
K Y C + C + ++ L+ H KHTG+KP+ C++ C F+SL+
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH 58
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEK--PYKC--EYCAYSCTQSSALKIHERKHTGDKPYIC- 113
CD +MKKH + K Y C E C + + + LK+H+ HT PY C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 114 -QQCRDTFSSLYLFRNRLQSH 133
+ C FS +RL+ H
Sbjct: 139 HEGCDKRFS----LPSRLKRH 155
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+GEKPY C C + T S L +H+ HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH 101
KY C C +KKH+R HT +PY C YC +S L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 83 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSS 122
Y CE C + S LK H R HT +PY C C +F +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKT 41
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+GEKPY C C + S L +H+R HTG+K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP++C C + S L +H+R HTG+KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C TQ+S L H HTG+KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP+KC C S Q L H+R HTG+KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C C + T S L H++ HTG+KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C C + + +L +H+R H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGD---KPYICQQCRDTFSSLYLFRNRL 130
R HTGEKPY C +C + Q L +H +R H + ++C +C TF+ RN +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR----RNTM 63
Query: 131 QSH 133
H
Sbjct: 64 ARH 66
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
KPY C CA + + S L +H+R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKCE C L +H++ HTG++P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C +S L H+R HTG+KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 70 MKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
++ H R H ++P+KC YC++ Q S L H +K GD
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 82 PYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCR-DTFSSLYLFRNRLQSHG 134
P KC C+YSC+ +AL+IHER H D+P+ C C DT L ++ + HG
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP++C C S + +S L +H+R HTG+ P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 59 ACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 105
C S +K H R HTGEKP+ C + C +S L H R H
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 88 CAYSCTQSSALKIHERKHTGDKPYIC 113
C + +SS LK H R HTG+KP+ C
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSC 50
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
+GEKPY+C C + S L IH+R HTG+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.030, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
+G+KPY C C + S L IHER HTG+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
E+P+ C +C + +S L H R H G +P C +C F L+ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+G KPY C C + S L IH R HTG+KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY C C + + S L IH R H+G+KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+KPYKC C TQ+S L H HTG+KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+G+KP C C + QSS L H+R H+G+KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKCE C Q + L+ H HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C+ C + + ++L H+R H+G+KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP+KC+ C + Q+ L H R HTG+KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EK +KC C +Q+S+L++H+ H G+KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY C+ C S +S L H+R H+G+KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHT 106
R H+GEKPY+C C TQS +K+H +KHT
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 55 YTCYACDYHTLMSEDMKKH-MRKHTGE-KPYKCEYCAYSCTQSSALKIHERK 104
Y CY C S MK H ++KHT + C +C + S L +H RK
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
EKPYKCE C + L +H+R H G+K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY+C C + + S+L H+ HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C + S L H+ HTG+KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
E+PY C C + T S L H++ HTG+KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGD 108
EKPY+C C + ++S L +H+R H+G+
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGD 108
EKPY+C C + S L +H+R HTG+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KP +C C + TQ+S+L H R+HTG+K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHT 106
+G +CE C ++C Q ++L H+RKH
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHA 31
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C + +S+ H+R HTG +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP+KCE C +S H+R H+G+KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EK YKC C +++S L H++ HTG+KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C ++S L H+ HTG+KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
+GEKPY C C + T S L +H+ HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KP++C+ C ++S LK H R HTG+K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC+ C + SS L H H+G++P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
E+ Y+C C + Q S L +H+R H G+KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY CE C LK H R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
E+ Y+C C + + S L +H+R HTG+KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTG 107
EKPY+C C + S L +HER H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
EKPYKC C + L H+R HTG+K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
+GEKPY C C + + S HER HTG+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
E P+ C C T + L IH++ HTG++P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP+ C C + + L H R HTG+KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
++PY+C C + S+L H R HTG+KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 80 EKPYKCEY--CAYSCTQSSALKIHERKHTGDKP 110
EKP+ C + C + ++S L H R H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 56 TCYACDYHTLMSEDMKKHMRKHTGEKP 82
T C + S+++ +H R H+G KP
Sbjct: 16 TWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKP+KC+ C S S L H HT +KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+KP++C +C S L H+R HTG+K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 83 YKCEYCAYSCTQSSALKIHERKHTGDKP 110
++C C + T+ S L +H++ HTG+KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
R TG KP++C C S ++S L +H ++H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+GEK ++C C + + S L IH+R HTG+ P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EK Y C+ C S +++ L HER H+G+KP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 106 TGDKPYICQQCRDTFSSLYLFRNRLQSH 133
+G+KPY C +C++TFS NRL H
Sbjct: 6 SGEKPYSCAECKETFSD----NNRLVQH 29
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHT 106
+GEKPY C C + + ++ L H++ HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKC C + + + L H R HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
KPY C C + + S+L H+ HTG+KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 82 PYKCEYCAYSCTQSSALKIHERKHTGDKP 110
PYKC C S + L +H+R HT +KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPYKCE C L H HTG+KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 0.77, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
+GEK ++C C + + S L IH+R HTG+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
E PY+C C + ++ L H+R H G+KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KP+KC C Y+ S LK H +H+ +K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEK 81
+ C C+Y T ++K HM +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KPY C +C AL+ H R HTG+K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKH 105
TG KP++C C +S ++S L +H ++H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
K ++C C T S L H+R HTG+KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
+ C+ C + + +H R HTGEKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
+GE PY+C C + + L H+R H G+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 81 KPYKC--EYCAYSCTQSSALKIHERKHTGDK 109
+P+ C YC T+S L+ H+R HTG+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
T EKPYKC C + S L H+ HTG+K
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+GEKP+ C C + + S L +H++ H +KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
EK + C+ C + SAL+IH+R H G+K
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGD 108
KPY C C + S L IH R HTG+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 82 PYKCEYCAYSCTQSSALKIHERKHTGDK 109
P KC C T S LK H R H+G+K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 57 CYACDYHTLMSEDMKKHMRKHTGEK 81
C C S ++K+H+R H+GEK
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+KPY+C+ C + Q L H+R HTG++
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
E PY C C S TQ +L +H+R + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
EKPY C C + T S L H++ HT KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 81 KPYKCEYCAYSCTQSSALKIH-ERKHTGDK 109
K Y+C+YC Y SS LK H + KH+ +K
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
E+ ++C C Q+S H R HTG+KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKP 82
+ C C L + + +H R HTGEKP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHER-KHTGDKP 110
+KPY+C C + Q+++L H R HTG+KP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
T E P+KC C + + S+ L H+ H G+ P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
+GEKPY C C + + H R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
EKP KC C + S L +H+R H DK
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKH 105
KPY CE C QSS L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 81 KPYKCEYCAYSCTQSSALKIH-ERKHTGDK 109
K Y+C+YC + SS LK H + KH+ +K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 70 MKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTG 107
+K H HT + PY+C E C + S LK HE+ H G
Sbjct: 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 70 MKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTG 107
+K H HT + PY+C E C + S LK HE+ H G
Sbjct: 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHT 106
EKPY C C + S+ L H R HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KPY+C+YC S + ++ H H DK
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHT 106
E P+KC C TQ + L HER H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.134 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,102,771
Number of Sequences: 62578
Number of extensions: 148281
Number of successful extensions: 860
Number of sequences better than 100.0: 186
Number of HSP's better than 100.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 478
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)