RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3507
(134 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 77.5 bits (192), Expect = 3e-20
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
C C Y ++ H R H ++P+KC YC++ Q S L H +K GD
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 75.2 bits (186), Expect = 2e-19
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+ P KC C+YSC+ +AL+IHER H D+P+ C C
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK 48
Score = 36.3 bits (85), Expect = 2e-04
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
+ C C + T ++ KHM+K G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 77.1 bits (191), Expect = 6e-20
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
S + +H+R HTG+KP++C C + ++S L H R HTG+KP+ C C F+
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73
Score = 62.5 bits (153), Expect = 4e-14
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ C C + S+ + H+R HTGEKP+ C+ C +S K H + H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 54.0 bits (131), Expect = 5e-11
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 80 EKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
E+PY C E C +QS +L H R HTG KP+ C+ C FS
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFS 45
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 76.3 bits (189), Expect = 1e-19
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
+ C C + +K HMR HTG KPYKC+ C Y+ SS+L H R H+ ++P+ CQ
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 115 QCRDTFS 121
C
Sbjct: 69 ICPYASR 75
Score = 70.1 bits (173), Expect = 4e-17
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
Y C CDY S + KH+R H+ E+P+KC+ C Y+ SS L +H R HTGD
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 65.9 bits (162), Expect = 2e-15
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
P+KCE C ++ LK H R HTG KPY C+ C +
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAA 47
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 73.7 bits (182), Expect = 1e-18
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 71 KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFS 121
R H+GEKPY+C C TQS +K+H + + C C +
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56
Score = 65.6 bits (161), Expect = 2e-15
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTGDKPY 111
Y CY C S MK H+ + E + C +C + S L +H RK H+ P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 37.5 bits (88), Expect = 1e-04
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 98 LKIHERKHTGDKPYICQQCRDTFS 121
R H+G+KPY C C F+
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFT 26
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 74.1 bits (183), Expect = 2e-18
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFS 121
S+ +K+H R+HTG KP++C+ C ++S LK H R HTG+KP+ C+ C+ F+
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Score = 73.3 bits (181), Expect = 4e-18
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
++ H RKHTGEKPY+C++ C ++S LK H+R+HTG KP+ C+ C+ FS
Sbjct: 21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFS 77
Score = 56.0 bits (136), Expect = 2e-11
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 78 TGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFS 121
+ ++P+ C Y C + S L++H RKHTG+KPY C + C FS
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFS 49
Score = 52.1 bits (126), Expect = 6e-10
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 105
+ C C S+ +K H R HTGEKP+ C + C +S L H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 72.5 bits (179), Expect = 2e-18
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 66 MSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
M H +KPYKC+ C S L H+ HTG+KPY C C F+
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN 56
Score = 62.9 bits (154), Expect = 2e-14
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
Y C C ++ H HTGEKPY+C C + + LK H R H+G+KPY
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 72.1 bits (178), Expect = 8e-18
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+K + C++C T+S L IHER HT ++PY C C F
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR 56
Score = 70.9 bits (175), Expect = 2e-17
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
+ C C H S ++ H R HT E+PY C+ C + + L+ H H+ +KP+ CQ
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 115 QCRDTFS 121
+C F
Sbjct: 78 ECGKGFC 84
Score = 62.1 bits (152), Expect = 6e-14
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
H H+ EKP+KC+ C QS L +H+ H
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 39.7 bits (94), Expect = 3e-05
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 95 SSALKIHERKHTGDKPYICQQCRDTFS 121
SS K +IC+ C F+
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFT 28
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 70.9 bits (175), Expect = 1e-17
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
S + + + YKC+ C S + SS L H R HTG+KPY C +C F
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57
Score = 59.4 bits (145), Expect = 4e-13
Identities = 24/45 (53%), Positives = 27/45 (60%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
S D+ KH R HTGEKPYKC+ C + Q S L H R HTG P
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 41.3 bits (98), Expect = 3e-06
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 94 QSSALKIHERKHTGDKPYICQQCRDTFS 121
S + E + + Y C +C +FS
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFS 29
Score = 28.6 bits (65), Expect = 0.21
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 72 KHMRKHTGEKPYK 84
H R HTG P
Sbjct: 64 GHHRVHTGSGPSS 76
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 71.4 bits (176), Expect = 2e-17
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK---HTGDKPY 111
C C L +K H RKHTGEKP++C C + L HE + + ++ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 112 ICQQCRDTFS 121
C C++TF
Sbjct: 68 TCSVCQETFR 77
Score = 68.3 bits (168), Expect = 4e-16
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 55 YTCYACDYHTLMSEDMKKHMRK---HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
+ C C E++ +H + + E+ + C C + + L++H HTG+ PY
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 112 ICQQCRDTFS 121
C C F
Sbjct: 96 KCSSCSQQFM 105
Score = 65.6 bits (161), Expect = 5e-15
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+G +C C LK+H RKHTG+KP+ C +C +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYF 46
Score = 52.5 bits (127), Expect = 5e-10
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDK 109
+TC C +++ HM HTGE PYKC C+ Q L+ H + H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 70.1 bits (173), Expect = 3e-17
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
H+ H+ +PY C+YC Q S +K H HTG+KP+ CQ C FS
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS 68
Score = 55.9 bits (136), Expect = 1e-11
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
DMKKH HTGEKP+KC+ C + +QSS L H RKHTG
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 47.4 bits (114), Expect = 2e-08
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 83 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+ C+ C S +SS L H H+ +PY CQ C F
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFH 40
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 72.1 bits (178), Expect = 5e-17
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C +++ H R HTGEKPY C C S +Q + L+ H+R HTG+KPY C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 115 QCRDTFS 121
+C +FS
Sbjct: 138 ECGKSFS 144
Score = 71.7 bits (177), Expect = 7e-17
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+H R HTGEKPYKC C S + L H+R HTG+KPY C +C +FS
Sbjct: 39 EHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFS 88
Score = 71.7 bits (177), Expect = 8e-17
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+H R HTGEKPYKC C S +Q + L+ H+R HTG+KPY C +C +FS
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFS 116
Score = 71.3 bits (176), Expect = 1e-16
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C ++ H R HTGEKPYKC C S ++ L H+R HTG+KPY C
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 115 QCRDTFS 121
+C +FS
Sbjct: 166 ECGKSFS 172
Score = 70.2 bits (173), Expect = 3e-16
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
GEKPY C C S ++S L H+R HTG+KPY C +C +FS
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Score = 57.8 bits (141), Expect = 1e-11
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
H R HTGEKPYKC C S ++ AL +H+R HTG K
Sbjct: 151 THQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 42.4 bits (101), Expect = 6e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 93 TQSSALKIHERKHTGDKPYICQQCRDTFS 121
SS+ G+KPY C +C +FS
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFS 32
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 69.1 bits (170), Expect = 9e-17
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
+ C C + S+ + H+R HTGEKP+ C+ C +S K H P +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILED 62
Query: 115 QCRDTFS 121
+ + S
Sbjct: 63 KVEELLS 69
Score = 56.0 bits (136), Expect = 1e-11
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
KP++C C + ++S L H R HTG+KP+ C C F+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 50.2 bits (121), Expect = 2e-09
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHE---RKHTGDK 109
+ C C S++ K+H P + +++ L+ +K G++
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 69.1 bits (170), Expect = 1e-16
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKP 110
+ C S +K H+R HTGEKPY C + C + +S L H RKHTG +P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 111 YICQQCRDTFS 121
+ CQ+C FS
Sbjct: 66 FQCQKCDRAFS 76
Score = 55.2 bits (134), Expect = 2e-11
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 76 KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFS 121
K T C + T+SS LK H R HTG+KPY C C F+
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFA 48
Score = 49.8 bits (120), Expect = 3e-09
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
S+++ +H RKHTG +P++C+ C + ++S L +H ++H
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 69.1 bits (170), Expect = 1e-16
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG--DKPYICQQCRDTFS 121
+H H+GEKPY C C + + H R H G KPYICQ C FS
Sbjct: 25 RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76
Score = 64.4 bits (158), Expect = 7e-15
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+G CE C L H+ H+G+KPY C C F
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFK 46
Score = 47.9 bits (115), Expect = 1e-08
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGE--KPYKCEYCAYSCTQSSALKIHERK-HTGDK 109
Y+C C + M H+R H G KPY C+ C ++ L H ++ H+G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 68.8 bits (169), Expect = 1e-16
Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 67 SEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
S +K H+R HTGEKPYKC E C + +S L H RKHTG KP+ C C +FS
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS 86
Score = 53.0 bits (128), Expect = 2e-10
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
S+++ +H RKHTG KP++C C S ++S L +H ++H
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 49.9 bits (120), Expect = 3e-09
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFS 121
S + R H + P C T+SS LK H R HTG+KPY C + C F+
Sbjct: 6 SGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 69.0 bits (170), Expect = 1e-16
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+HM H G +PY C C L H + HTG KPY C C F
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76
Score = 65.5 bits (161), Expect = 3e-15
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 74 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+G+K Y C+ C S T S H H G +PY C C F
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK 48
Score = 65.5 bits (161), Expect = 4e-15
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C M + HM+ HTG KPY+C CA + H + K Y
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95
Query: 115 QCRDTFS 121
+ +
Sbjct: 96 KAEQNTT 102
Score = 37.8 bits (89), Expect = 1e-04
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSAL 98
H + K Y+ + T++S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGP 107
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 67.1 bits (165), Expect = 3e-16
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
H+GEKPY C C + ++SS L H+R HTG+KPY C +C FS
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53
Score = 59.8 bits (146), Expect = 2e-13
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
+H R HTGEKPYKC C + +Q+S L H+R HT
Sbjct: 32 QHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 98 LKIHERKHTGDKPYICQQCRDTFS 121
H+G+KPY C +C FS
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFS 25
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 69.2 bits (170), Expect = 3e-16
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 55 YTCYACDYHTLM-----SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTG 107
+ C+ + + HMR+HTGEKP+KC + C S ++ LK H R HTG
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 108 DKPYICQQ--CRDTFSSL 123
+KPY+C+ C FS+
Sbjct: 95 EKPYMCEHEGCSKAFSNA 112
Score = 64.9 bits (159), Expect = 2e-14
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIH-ERKHTGDKPYICQ--QCRDTFS 121
E++K H+R HTGEKPY CE+ C+ + + +S H R H+ +KPY+C+ C ++
Sbjct: 82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT 141
Score = 50.7 bits (122), Expect = 5e-09
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 67 SEDMKKHM-RKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTG 107
+ D KH R H+ EKPY C+ C T S+L+ H + G
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 48.7 bits (117), Expect = 2e-08
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 80 EKPYKCEYCAYSCTQSSALKIH---ERKHTGDKPYICQQC 116
E + + C+ L H E H K ++C
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG 40
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 67.5 bits (166), Expect = 9e-16
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYI 112
+ C C + S +K+H HTGEKP++C + C + L+ H R HTGD+PY+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 113 C--QQCRDTFS 121
C C F+
Sbjct: 95 CPFDGCNKKFA 105
Score = 64.5 bits (158), Expect = 1e-14
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC--QQCRDTFS 121
+ M+KH+ H G + + C C + +SS LK H+ HTG+KP+ C + C FS
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75
Score = 60.6 bits (148), Expect = 4e-13
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPY 111
+++ H+R HTG++PY C + C QS+ LK H H K
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 46.4 bits (111), Expect = 1e-07
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 80 EKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+ C + C +SA++ H H G + ++C +C F
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFV 45
Score = 32.9 bits (76), Expect = 0.011
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 67 SEDMKKHMRKHTGEKPYK 84
S ++K H+ H K +
Sbjct: 107 STNLKSHILTHAKAKNNQ 124
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 66.4 bits (163), Expect = 9e-16
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG----DKPYICQQCRDTFSSLYLFR 127
R HTGEKPY C +C + Q L +H +++ ++C +C TF+ R
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR----R 60
Query: 128 NRLQSH 133
N + H
Sbjct: 61 NTMARH 66
Score = 63.3 bits (155), Expect = 1e-14
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGE----KPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
Y C CD + + H +++ + C C + T+ + + H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 111 YICQQCRDTF 120
+ +
Sbjct: 76 VEGENSGPSS 85
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 98 LKIHERKHTGDKPYICQQCRDTFS 121
R HTG+KPY C C TF
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFR 26
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 65.6 bits (161), Expect = 1e-15
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 67 SEDMKKHMR-KHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTF 120
+ + H + +H +K + C C S LK H + H+ + YIC+ +
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 51.4 bits (124), Expect = 5e-10
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 77 HTGEKPYKCEY--CAYSCTQSSALKIHER-KHTGDKPYICQQ--CRDTFS 121
+G C++ C + L H++ +H K + C + C +F+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFN 51
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKCE C L +H++ HTG++P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 100 IHERKHTGDKPYICQQCRDTFS 121
TG+KPY C++C ++
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYN 23
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 64.0 bits (156), Expect = 6e-15
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHT---GDKPYICQQCRDTFS 121
+G +CE C ++C Q ++L H+RKH + C+ C F
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFE 49
Score = 59.7 bits (145), Expect = 3e-13
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHT---GEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
C C + + H RKH + CE+C + ++ H K
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 112 ICQQC 116
Q+
Sbjct: 68 APQES 72
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 66.2 bits (162), Expect = 6e-15
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYIC 113
SE++K H R HTGEKP+KCE+ C SS K H HT DK
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 65.0 bits (159), Expect = 1e-14
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 70 MKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ--QCRDTFS 121
+ H+R HTGEKP+ C + C +S LKIH+R HTG+KP+ C+ C F+
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFA 133
Score = 59.6 bits (145), Expect = 2e-12
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAY--SCT-------QSSALKIHERKH 105
+CD ++ H+ P + + Y C L H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 106 TGDKPYIC--QQCRDTFSSL 123
TG+KP+ C C F+
Sbjct: 86 TGEKPFPCPFPGCGKIFARS 105
Score = 58.5 bits (142), Expect = 5e-12
Identities = 7/61 (11%), Positives = 14/61 (22%), Gaps = 9/61 (14%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY---------ICQQCRDTFSSL 123
+ + C + + L H P C + +F +
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK 75
Query: 124 Y 124
Y
Sbjct: 76 Y 76
Score = 31.1 bits (71), Expect = 0.049
Identities = 4/31 (12%), Positives = 8/31 (25%)
Query: 93 TQSSALKIHERKHTGDKPYICQQCRDTFSSL 123
+ + C TFS++
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTM 38
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 7e-15
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C + T+ S L IH++ HTG++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C C F+
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFT 23
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 1e-14
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
+GEKP+KCE C TQ+S L H+R HTG+KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.003
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+KP+ C++C F+
Sbjct: 3 SGSSGSGEKPFKCEECGKRFT 23
Score = 31.7 bits (73), Expect = 0.007
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
+ C C + + H R HTGEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 62.2 bits (152), Expect = 1e-14
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
TGEKPY C+ C S +S L H+R H+G+KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 34.5 bits (80), Expect = 7e-04
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C++C +F
Sbjct: 3 SGSSGTGEKPYNCKECGKSFR 23
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
Y C C + + KH R H+GEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 1e-14
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C TQ+S L H+R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFT 23
Score = 31.0 bits (71), Expect = 0.014
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 72 KHMRKHTGEKPYKCE 86
H R HTG KP
Sbjct: 30 NHQRIHTGVKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 2e-14
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GEKPYKC C + L H+R HTG+K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 32.5 bits (75), Expect = 0.004
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+KPY C +C +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYK 23
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 62.2 bits (152), Expect = 2e-14
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKP+KC C ++ SAL +H + HTG+KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KP+ C +C FS
Sbjct: 3 SGSSGTGEKPFKCVECGKGFS 23
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 2e-14
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C S T S L+IH++ HTG++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.5 bits (75), Expect = 0.003
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
Y C C ++ H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.1 bits (74), Expect = 0.005
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C C +F+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFT 23
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 2e-14
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C C S T+ S L +H++ HTG+KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 100 IHERKHTGDKPYICQQCRDTFS 121
TG+KPY C C +F+
Sbjct: 2 SSGSSGTGEKPYECSICGKSFT 23
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.1 bits (152), Expect = 2e-14
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C C + S L +H+R HTG+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 100 IHERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C+ F+
Sbjct: 2 SSGSSGTGEKPYECNECQKAFN 23
Score = 30.9 bits (71), Expect = 0.012
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 72 KHMRKHTGEKPYKC 85
H R HTGE
Sbjct: 30 VHQRTHTGESGPSS 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 61.8 bits (151), Expect = 2e-14
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
GEK +KC C +Q+S+L++H+ H G+KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.002
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
+ C CD + ++ H H GEKP
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.006
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G+K + C++C FS
Sbjct: 3 SGSSGMGEKTWKCRECDMCFS 23
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.7 bits (151), Expect = 2e-14
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TG KPY C C + S L IH R HTG+
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG KPY+C +C F
Sbjct: 3 SGSSGTGMKPYVCNECGKAFR 23
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-14
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
+GEKPY C+YC + S+ L H+R HTG+KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.001
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+KPY+C C F
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFG 23
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-14
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C C S + S L +H+R HTG+ P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C C +F
Sbjct: 3 SGSSGTGEKPYECSDCGKSFI 23
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-14
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY CE C + S L+ H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C++C F
Sbjct: 3 SGSSGTGEKPYNCEECGKAFI 23
Score = 32.1 bits (74), Expect = 0.006
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
Y C C + +++H R HTGEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 61.0 bits (149), Expect = 3e-14
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
GEKPYKCE C Q + L+ H HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 32.1 bits (74), Expect = 0.004
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPY 83
Y C C + ++ H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 31.0 bits (71), Expect = 0.012
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G+KPY C+ C F
Sbjct: 2 SSGSSGGEKPYKCETCGARFV 22
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-14
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
GEK YKC+ C +QSS L+ H+R HTG+KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 100 IHERKHTGDKPYICQQCRDTFS 121
G+K Y C C FS
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFS 23
Score = 31.0 bits (71), Expect = 0.014
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
Y C C S ++ H R HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-14
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
TGEKPYKC+ C S S+L +H+R HTG+KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.001
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C C +F
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFR 23
Score = 31.7 bits (73), Expect = 0.006
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
Y C C + H R HTGEKP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-14
Identities = 19/42 (45%), Positives = 20/42 (47%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY C C S Q S L H R HTG+KP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPYIC +C +F
Sbjct: 3 SGSSGTGEKPYICNECGKSFI 23
Score = 31.7 bits (73), Expect = 0.009
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
+H R HTGEKP
Sbjct: 30 RHRRIHTGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 61.0 bits (149), Expect = 4e-14
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKCE C L H HTG+KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.001
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
Y C C + D+ H HTGEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.003
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C++C F
Sbjct: 3 SGSSGTGEKPYKCEECGKGFI 23
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-14
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
G+K +KC C + TQSS+L +H+R HTG+KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G K + C +C+ TF+
Sbjct: 3 SGSSGAGKKLFKCNECKKTFT 23
Score = 30.9 bits (71), Expect = 0.012
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 72 KHMRKHTGEKPYKC 85
H R HTGEKP
Sbjct: 30 VHQRIHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-14
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C + +Q+S L H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C FS
Sbjct: 3 SGSSGTGEKPYKCNECGKAFS 23
Score = 31.7 bits (73), Expect = 0.008
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
+H R HTGEKP
Sbjct: 30 RHQRIHTGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKP++C C S + +S L +H+R HTG+ P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KP+ C++C +FS
Sbjct: 3 SGSSGTGEKPHECRECGKSFS 23
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-14
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
+GEKPYKC C + + + L H R HTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 32.1 bits (74), Expect = 0.006
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+KPY C +C F
Sbjct: 3 SGSSGSGEKPYKCSECGKAFH 23
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 61.1 bits (149), Expect = 5e-14
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQQCRDTFSS 122
+ KPY C+ C ++ L H ++ HT ++P+ CQ SS
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 5e-14
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKP+KC+ C S S L H HT +KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KP+ C C +F
Sbjct: 3 SGSSGTGEKPFKCDICGKSFC 23
Score = 32.1 bits (74), Expect = 0.005
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 72 KHMRKHTGEKPYKCE 86
+H HT EKP
Sbjct: 30 RHSMVHTAEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 5e-14
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C + S+L IH+ H+G+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.002
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F
Sbjct: 3 SGSSGTGEKPYKCNECGKAFR 23
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 5e-14
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C TQ+S L H HTG+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFT 23
Score = 30.9 bits (71), Expect = 0.012
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 72 KHMRKHTGEKPYKCE 86
+H HTGEKP
Sbjct: 30 RHRGIHTGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 5e-14
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TG++PY+C C + S+L H R HTG+KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG +PY C +C F
Sbjct: 3 SGSSGTGQRPYECIECGKAFK 23
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 60.6 bits (148), Expect = 5e-14
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKP++C C S + SS L H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KP+ C +C +FS
Sbjct: 3 SGSSGTGEKPFECAECGKSFS 23
Score = 31.7 bits (73), Expect = 0.008
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
+ C C +S + H R HTGEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 6e-14
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGE+ Y+C C + Q S L +H+R H G+KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG++ Y C +C F
Sbjct: 3 SGSSGTGERHYECSECGKAFI 23
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 6e-14
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEK Y C+ C S +++ L HER H+G+KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.002
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+K Y C++C +FS
Sbjct: 3 SGSSGTGEKLYNCKECGKSFS 23
Score = 31.3 bits (72), Expect = 0.010
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 72 KHMRKHTGEKPYKC 85
KH R H+GEKP
Sbjct: 30 KHERLHSGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 6e-14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C C + + +L +H+R H+G KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 100 IHERKHTGDKPYICQQCRDTFS 121
TG+KPY C C FS
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFS 23
Score = 30.9 bits (71), Expect = 0.014
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 72 KHMRKHTGEKPYKCE 86
H R H+G+KP
Sbjct: 30 VHQRIHSGKKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 6e-14
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TG KPY+C C + +Q+S L H+R HTG+KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 100 IHERKHTGDKPYICQQCRDTFS 121
TG KPY C +C FS
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFS 23
Score = 31.7 bits (73), Expect = 0.007
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
+H R HTGEKP
Sbjct: 30 RHQRVHTGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 6e-14
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GEKP++CE C TQ+S L H+R HTG+KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.002
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+KP+ C++C F+
Sbjct: 3 SGSSGSGEKPFQCEECGKRFT 23
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 7e-14
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+ EKPYKCE C + L +H+R H G+K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 32.5 bits (75), Expect = 0.004
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+ +KPY C+ C ++
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYN 23
Score = 30.9 bits (71), Expect = 0.013
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 72 KHMRKHTGEKPYKC 85
H R H GEK
Sbjct: 30 MHQRVHMGEKTSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 60.2 bits (147), Expect = 7e-14
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
G PYKC C S + L +H+R HT +KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.003
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G PY C QC +FS
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFS 23
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 7e-14
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGE+P+KC C S QS+ L H+R HTG+KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG++P+ C +C +F
Sbjct: 3 SGSSGTGERPHKCNECGKSFI 23
Score = 30.9 bits (71), Expect = 0.013
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
+H R HTGEKP
Sbjct: 30 QHQRIHTGEKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 60.2 bits (147), Expect = 8e-14
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TG KPY C CA + + S L +H+R HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG KPY C QC TFS
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFS 23
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 8e-14
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C C + T S L H++ HTG+KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F+
Sbjct: 3 SGSSGTGEKPYRCAECGKAFT 23
Score = 32.9 bits (76), Expect = 0.003
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
Y C C ++ H + HTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.3 bits (147), Expect = 8e-14
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
+GEKP+KCE C +S H+R H+G+KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.003
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+KP+ C++C F
Sbjct: 3 SGSSGSGEKPFKCEECGKGFY 23
Score = 31.4 bits (72), Expect = 0.009
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
+ C C + H R H+GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 8e-14
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GEKPY C C + +Q S L H+R HTG+KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 100 IHERKHTGDKPYICQQCRDTFS 121
+G+KPY C +C TFS
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFS 23
Score = 31.7 bits (73), Expect = 0.007
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 72 KHMRKHTGEKPYKCE 86
H R HTGEKP
Sbjct: 30 AHQRTHTGEKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 60.2 bits (147), Expect = 9e-14
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C+ C + +Q++ L H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C++C FS
Sbjct: 3 SGSSGTGEKPYECKECGKAFS 23
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 61.1 bits (149), Expect = 9e-14
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSS 122
+K H HT + PY+C + C + S LK HE+ H G C +
Sbjct: 16 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKT 73
Score = 41.1 bits (97), Expect = 5e-06
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 83 YKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSS 122
Y C + C + + + LK+H+ HT PY C C FS
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL 45
Score = 39.5 bits (93), Expect = 2e-05
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK 104
Y+ CD + +K+H + H G K + C++ + H +
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 60.2 bits (147), Expect = 9e-14
Identities = 16/39 (41%), Positives = 16/39 (41%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
GEKPY CE C LK H R HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 34.8 bits (81), Expect = 5e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPY 83
Y C C + +K H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 31.3 bits (72), Expect = 0.010
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G+KPY C+ C F
Sbjct: 2 SSGSSGGEKPYPCEICGTRFR 22
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 59.9 bits (146), Expect = 9e-14
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
GEKPY+C+ C + +Q +L +H R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 35.2 bits (82), Expect = 3e-04
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G+KPY C QC FS
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFS 22
Score = 28.7 bits (65), Expect = 0.097
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPY 83
Y C C + H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-13
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C TQ+S L H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFT 23
Score = 31.0 bits (71), Expect = 0.013
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 72 KHMRKHTGEKPYKCE 86
+H R HTG KP
Sbjct: 30 RHRRVHTGGKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GEKP+KC+ C + Q+ L H R HTG+KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.002
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+KP+ C++C F
Sbjct: 3 SGSSGSGEKPFKCKECGKAFR 23
Score = 31.7 bits (73), Expect = 0.006
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
H+R HTGEKP
Sbjct: 30 SHLRIHTGEKPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 59.8 bits (146), Expect = 1e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEK YKC C +++S L H++ HTG+KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+K Y C +C FS
Sbjct: 3 SGSSGTGEKRYKCNECGKVFS 23
Score = 31.3 bits (72), Expect = 0.010
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
+H + HTGEKP
Sbjct: 30 QHQKIHTGEKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
TGE+PY C C + T S L H++ HTG+KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.001
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG++PYIC C F+
Sbjct: 3 SGSSGTGERPYICTVCGKAFT 23
Score = 32.1 bits (74), Expect = 0.006
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
Y C C ++ KH + HTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 1e-13
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
GEKPY C C + + S L IH R H+G+KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G+KPY C +C FS
Sbjct: 3 SGSSGAGEKPYGCSECGKAFS 23
Score = 31.4 bits (72), Expect = 0.009
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 73 HMRKHTGEKPYKCE 86
HMR H+GEKP
Sbjct: 31 HMRTHSGEKPSGPS 44
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 63.4 bits (155), Expect = 1e-13
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 71 KKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFS 121
+ H+ KHTGEKP+ C+ C T L H HTG+K + C C F+
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFT 85
Score = 63.4 bits (155), Expect = 1e-13
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 72 KHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFSSLY 124
K Y C + C + ++ L+ H KHTG+KP+ C++ C F+SL+
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLH 58
Score = 63.4 bits (155), Expect = 1e-13
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 71 KKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGD---KPYICQQCRDTFSSL 123
K H HT + PY+C E C + S LK HE+ H G K C T++
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
Score = 58.4 bits (142), Expect = 9e-12
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 71 KKHMRKHTGEKPYKCE--YCAYSCTQSSALKIHERKHTGDK--PYIC--QQCRDTFS 121
+H HTGEK + C+ C T + +K H + K Y+C + C F
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFK 117
Score = 57.6 bits (140), Expect = 2e-11
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 67 SEDMKKHMRKHTGEK--PYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTF 120
+MKKH + K Y C + C + + + LK+H+ HT PY C C F
Sbjct: 87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF 146
Query: 121 SSLYLFRNRLQSH 133
S +RL+ H
Sbjct: 147 SL----PSRLKRH 155
Score = 36.8 bits (86), Expect = 6e-04
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 71 KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK 104
K+H + H G K + C++ + H +
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-13
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKP+KC C S Q L H+R HTG+KP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.004
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KP+ C +C +++
Sbjct: 3 SGSSGTGEKPFKCGECGKSYN 23
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 1e-13
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C+ C+ + TQ + L H++ HTG+KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 9e-04
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C+ C F+
Sbjct: 3 SGSSGTGEKPYECKVCSKAFT 23
Score = 31.0 bits (71), Expect = 0.012
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
+H + HTGEKP
Sbjct: 30 QHQKTHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-13
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GEKPYKC C TQ+S L H R HTG+KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+KPY C +C F+
Sbjct: 3 SGSSGSGEKPYKCNECGKVFT 23
Score = 31.3 bits (72), Expect = 0.012
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 72 KHMRKHTGEKPYKC 85
H R HTGEKP
Sbjct: 30 NHWRIHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-13
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY C C + S+ L H R HT +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C C F
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFV 23
Score = 32.1 bits (74), Expect = 0.006
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 72 KHMRKHTGEKPYKCE 86
+H+R HT E
Sbjct: 30 QHLRVHTQETLSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 1e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C C + + S+L H+ HTG KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C QC FS
Sbjct: 3 SGSSGTGEKPYECNQCGKAFS 23
Score = 31.0 bits (71), Expect = 0.014
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 72 KHMRKHTGEKPYKCE 86
H HTG+KP
Sbjct: 30 THQAIHTGKKPSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 59.6 bits (145), Expect = 1e-13
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 73 HMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 114
TGEKP+ C + C + ++S L H R H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 35.0 bits (81), Expect = 5e-04
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 67 SEDMKKHMRKHTGEKPYKCE 86
S+++ +H R H+G KP
Sbjct: 27 SDELSRHRRSHSGVKPSGPS 46
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 1e-13
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
GE+ ++C C Q+S H R HTG+KP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.007
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G++ + C C F
Sbjct: 3 SGSSGHGERGHRCSDCGKFFL 23
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-13
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKP++C C + S L +H+R HTG+KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KP+ C +C+ F+
Sbjct: 3 SGSSGTGEKPFECSECQKAFN 23
Score = 31.3 bits (72), Expect = 0.009
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
+ C C ++ H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC+ C + SS L H H+G++P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY CQ C F
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFR 23
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-13
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TG KPY C C + + S+L H+ HTG+KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.002
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG KPY+C +C FS
Sbjct: 3 SGSSGTGVKPYMCNECGKAFS 23
Score = 32.5 bits (75), Expect = 0.004
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
Y C C + + H HTGEKP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-13
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGE+ Y+C C + + S L +H+R HTG+KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG++ Y C +C F+
Sbjct: 3 SGSSGTGERHYECSECGKAFA 23
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-13
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TG+KPYKC C TQ+S L H HTG+KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG KPY C +C F+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFT 23
Score = 31.3 bits (72), Expect = 0.009
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 72 KHMRKHTGEKPYKCE 86
+H HTGEKP
Sbjct: 30 RHRGIHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-13
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY C C + T S L H++ HT KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPYIC +C F+
Sbjct: 3 SGSSGTGEKPYICAECGKAFT 23
Score = 31.3 bits (72), Expect = 0.009
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 72 KHMRKHTGEKPYKCE 86
KH + HT +KP
Sbjct: 30 KHQKIHTKQKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C C + Q + L H+R HTG+KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F+
Sbjct: 3 SGSSGTGEKPYRCGECGKAFA 23
Score = 30.9 bits (71), Expect = 0.014
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 72 KHMRKHTGEKPYKC 85
+H R HTGEKP
Sbjct: 30 QHQRIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 59.1 bits (144), Expect = 2e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TG+KP++C +C S L H+R HTG+K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 100 IHERKHTGDKPYICQQCRDTFS 121
TG KP+ C C +F
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFR 23
Score = 31.7 bits (73), Expect = 0.008
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
+ C C ++ H R HTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
TG K ++C C + T+ S L +H++ HTG+KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.002
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG K + C +C F+
Sbjct: 3 SGSSGTGGKHFECTECGKAFT 23
Score = 31.0 bits (71), Expect = 0.015
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 72 KHMRKHTGEKPYKCE 86
H + HTGEKP
Sbjct: 30 MHQKIHTGEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 2e-13
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C TQ+S L H HTG+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.003
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFT 23
Score = 31.3 bits (72), Expect = 0.010
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 72 KHMRKHTGEKPYKCE 86
+H HTGEKP
Sbjct: 30 RHRGIHTGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C + S L H+ HTG+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.005
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F
Sbjct: 3 SGSSGTGEKPYKCNECGKAFR 23
Score = 31.7 bits (73), Expect = 0.007
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 72 KHMRKHTGEKPYKCE 86
H HTGEKP
Sbjct: 30 THQVIHTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPY+C+ C + + ++L H+R H+G+KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 100 IHERKHTGDKPYICQQCRDTFS 121
TG+KPY C CR FS
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFS 23
Score = 31.7 bits (73), Expect = 0.009
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
+H R H+GEKP
Sbjct: 30 QHQRVHSGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKP+ C C + + L H R HTG+KP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KP+ C C FS
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFS 23
Score = 31.3 bits (72), Expect = 0.009
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
+H R HTGEKP
Sbjct: 30 QHRRIHTGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C +S L H+R HTG+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F
Sbjct: 3 SGSSGTGEKPYKCNECGKVFR 23
Score = 31.7 bits (73), Expect = 0.007
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
Y C C + + +H R HTGEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 2e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGE P+ C C T + L IH++ HTG++P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+ P+IC +C F+
Sbjct: 3 SGSSGTGENPFICSECGKVFT 23
Score = 30.5 bits (70), Expect = 0.018
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
+ C C ++ H + HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 58.7 bits (143), Expect = 3e-13
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GEKPY+C C + S L +HER H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+KPY C +C F
Sbjct: 3 SGSSGSGEKPYECNECGKAFI 23
Score = 29.0 bits (66), Expect = 0.078
Identities = 4/14 (28%), Positives = 4/14 (28%)
Query: 72 KHMRKHTGEKPYKC 85
H R H G
Sbjct: 30 VHERTHAGVSGPSS 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 3e-13
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C + +S+ H+R HTG +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 32.6 bits (75), Expect = 0.004
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F
Sbjct: 3 SGSSGTGEKPYKCMECGKAFG 23
Score = 31.8 bits (73), Expect = 0.007
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 72 KHMRKHTGEKPYKCE 86
+H R HTG++P
Sbjct: 30 QHQRLHTGQRPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.6 bits (143), Expect = 4e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKPYKC C ++S L H+ HTG+KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KPY C +C F
Sbjct: 3 SGSSGTGEKPYKCHECGKVFR 23
Score = 31.7 bits (73), Expect = 0.006
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 72 KHMRKHTGEKPYKCE 86
+H HTGEKP
Sbjct: 30 RHQLIHTGEKPSGPS 44
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 59.1 bits (144), Expect = 4e-13
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIHER--KHTGDKPYICQQCRDTFS 121
GE Y+C+ C+ T S H K Y C C F+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFT 51
Score = 50.2 bits (121), Expect = 9e-10
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 55 YTCYACDYHTLMSEDMKKHMR--KHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
Y C C + +H K Y C +C T+ + H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 29.8 bits (68), Expect = 0.049
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 102 ERKHTGDKPYICQQCRDTFS 121
E G+ Y C+ C ++
Sbjct: 2 EFTKEGEHTYRCKVCSRVYT 21
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 5e-13
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKP KC C + S L +H+R H DK
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 30.6 bits (70), Expect = 0.018
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KP C +C F
Sbjct: 3 SGSSGTGEKPCKCTECGKAFC 23
Score = 30.2 bits (69), Expect = 0.023
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 72 KHMRKHTGEKPYKC 85
H R H +K
Sbjct: 30 MHQRTHVDDKHSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 6e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGE PY+C C + ++ L H+R H G+KP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+ PY C +C FS
Sbjct: 3 SGSSGTGENPYECHECGKAFS 23
Score = 30.9 bits (71), Expect = 0.013
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 72 KHMRKHTGEKPYKC 85
H R H GEKP
Sbjct: 30 SHQRTHAGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 7e-13
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQ 115
+G+KPY+C+ C + Q L H+R HTG++
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 32.9 bits (76), Expect = 0.002
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G KPY C++CR TF
Sbjct: 3 SGSSGSGKKPYECKECRKTFI 23
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 9e-13
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GE+P+KC C + S L H R H+ +K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 31.0 bits (71), Expect = 0.016
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G++P+ C +C F
Sbjct: 3 SGSSGSGERPFKCNECGKGFG 23
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 1e-12
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGEKP++C+ C + + S +L H R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 34.1 bits (79), Expect = 9e-04
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+KP+ C++C FS
Sbjct: 3 SGSSGTGEKPFQCKECGMNFS 23
Score = 32.2 bits (74), Expect = 0.004
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
+ C C + S + KH+R H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 2e-12
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
GEKPY+C C S + S L H HT +KP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 31.4 bits (72), Expect = 0.009
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G+KPY C +C +FS
Sbjct: 3 SGSSGEGEKPYQCSECGKSFS 23
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 2e-12
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GEK + C+ C + SAL+IH+R H G+K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 30.6 bits (70), Expect = 0.020
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G+K + C +C F
Sbjct: 3 SGSSGSGEKSHTCDECGKNFC 23
Score = 27.9 bits (63), Expect = 0.19
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCE 86
+TC C + ++ H R H GEK
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 56.4 bits (137), Expect = 3e-12
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GEKP+ C C + + S L +H++ H +KP
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 31.4 bits (72), Expect = 0.010
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 73 HMRKHTGEKPYKC 85
H + H EKP
Sbjct: 29 HQQTHAEEKPSGP 41
Score = 28.7 bits (65), Expect = 0.10
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 105 HTGDKPYICQQCRDTFSS 122
+G+KP+ C C FSS
Sbjct: 5 SSGEKPFGCSCCEKAFSS 22
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 56.0 bits (136), Expect = 4e-12
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYIC 113
TG+KPY+C C + Q+++L H R HTG+KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 33.3 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG KPY C +C F
Sbjct: 3 SGSSGTGKKPYECIECGKAFI 23
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 55.2 bits (134), Expect = 8e-12
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GE PY+C C + + L H+R H G+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 30.2 bits (69), Expect = 0.024
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 72 KHMRKHTGEKPYKC 85
H R H GE
Sbjct: 28 SHQRTHAGESGPSS 41
Score = 29.4 bits (67), Expect = 0.053
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 102 ERKHTGDKPYICQQCRDTFS 121
+G+ PY C +C F+
Sbjct: 2 SSGSSGENPYECSECGKAFN 21
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 55.2 bits (134), Expect = 8e-12
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+ K ++C C T S L H+R HTG+KP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.010
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+ K + C +C F+
Sbjct: 3 SGSSGSSTKSHQCHECGRGFT 23
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 54.8 bits (133), Expect = 1e-11
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
TGE PY+C C ++ L H++ H+G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.1 bits (74), Expect = 0.005
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
TG+ PY C +C FS
Sbjct: 3 SGSSGTGENPYECCECGKVFS 23
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 54.6 bits (132), Expect = 1e-11
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
GE PY C C S TQ +L +H+R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 32.3 bits (74), Expect = 0.004
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G+ PY+C QC +F+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFT 22
Score = 29.2 bits (66), Expect = 0.068
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYK 84
Y C C + H R + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 1e-11
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GE+PY C C + + S L H ++H +K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 31.3 bits (72), Expect = 0.012
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 72 KHMRKHTGEKPYKC 85
+H+++H EK
Sbjct: 30 EHLKRHFREKSSGP 43
Score = 30.9 bits (71), Expect = 0.016
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
+G++PY C +C F
Sbjct: 3 SGSSGSGERPYGCNECGKNFG 23
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 55.0 bits (133), Expect = 2e-11
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 67 SEDMKKHMRKHTGEKPYKC--EYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
++ ++ +PY C E C ++S L H R HTG KP+ C+ C FS
Sbjct: 6 MNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Score = 51.9 bits (125), Expect = 3e-10
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
S+++ +H+R HTG+KP++C C + ++S L H R HT
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 53.7 bits (130), Expect = 3e-11
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
+G++ Y+C+ C S Q +L +HER HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 29.1 bits (66), Expect = 0.074
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 102 ERKHTGDKPYICQQCRDTFS 121
+G + Y CQ+C +F
Sbjct: 2 SSGSSGQRVYECQECGKSFR 21
Score = 26.4 bits (59), Expect = 0.60
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 72 KHMRKHTGEKPY 83
H R HTG P
Sbjct: 28 LHERIHTGSGPS 39
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 54.0 bits (129), Expect = 3e-11
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KY C C +KKH+R HT +PY C YC +S L H + K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.1 bits (106), Expect = 9e-08
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 83 YKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
Y CE C + S LK H R HT +PY C C +F + ++S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 52.5 bits (127), Expect = 1e-10
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
+ + CE C + + LK H R HT +KPY C C F+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41
Score = 50.6 bits (122), Expect = 7e-10
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERK-HTGDK 109
+ C C E +K+H R HT EKPY C C + T+ L H +K H+G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 51.6 bits (124), Expect = 4e-10
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKHTGDKPYICQQ--CRDTFS 121
S + + + C + C + +SS LK H R HTG+KP+ C C F+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60
Score = 45.8 bits (109), Expect = 6e-08
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 67 SEDMKKHMRKHTGEKPYKCEY--CAYSCTQSSALKIHERKH 105
S +K H R HTGEKP+ C + C +S L H R H
Sbjct: 32 SSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.7 bits (117), Expect = 3e-09
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
T K Y C C + T+ L H++ HT
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
T K Y C +C F+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFT 23
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 45.4 bits (108), Expect = 4e-08
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYIC 113
+GEKPY C C + + ++ L H++ HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.8 bits (70), Expect = 0.014
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 105 HTGDKPYICQQCRDTFS 121
+G+KPY C +C++TFS
Sbjct: 5 SSGEKPYSCAECKETFS 21
Score = 23.4 bits (51), Expect = 7.4
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKC 85
Y+C C + + +H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 44.5 bits (105), Expect = 1e-07
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
K CE C L H+ H+G+KPY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.4 bits (76), Expect = 0.002
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 54 KYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCA 89
+ C C + +H H+GEKPY +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 23.7 bits (51), Expect = 6.9
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 103 RKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
K C+ C F +Y SH
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 46.3 bits (109), Expect = 1e-07
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIH--ERKHTGDKPYICQQCRDTFSSLY 124
K + TG ++C+ C+ + L +H E H D + S
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63
Query: 125 LFRNRLQSHG 134
R+ L+ G
Sbjct: 64 RKRSLLEMEG 73
Score = 42.1 bits (98), Expect = 5e-06
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 54 KYTCYACDYHTLMSEDMKKHMR-----KHTGEKPYKCEYCAYSCTQSSALKIHERKHTGD 108
K+ C C ++ HM + + +S + +L E K
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 109 KPYICQQCRDTFSSL 123
K C C +F SL
Sbjct: 79 KVLKCMYCGHSFESL 93
Score = 35.5 bits (81), Expect = 0.001
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 93 TQSSALKIHERKHTGDKPYICQQCRDTFSSLY 124
+ S+ K++ TG + C+ C + +L
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLV 33
Score = 34.0 bits (77), Expect = 0.004
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 3/82 (3%)
Query: 32 TAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYS 91
T EL H N + + + K +K KC YC +S
Sbjct: 31 TLVELTVHMNETGHYRDDNHE-TDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHS 89
Query: 92 CTQSSALKIH--ERKHTGDKPY 111
L +H + KH
Sbjct: 90 FESLQDLSVHMIKTKHYQKVSG 111
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 45.0 bits (106), Expect = 1e-07
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFS 121
S K + H G++ KC C + S + K +C++CR
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSC 50
Score = 36.6 bits (84), Expect = 2e-04
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
+ K CE C Q +AL E +G K
Sbjct: 30 RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 25.8 bits (56), Expect = 1.9
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 38 YHCKTC----STVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGEKPY 83
C C S + C C + + K +G+K
Sbjct: 19 QKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 43.7 bits (103), Expect = 2e-07
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
GE P+KC C TQ + L HER H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 28.3 bits (63), Expect = 0.12
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
G+ P+ C +C F+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFT 23
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 42.3 bits (100), Expect = 5e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
R TG KP++C C S ++S L +H ++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.5 bits (77), Expect = 0.001
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 101 HERKHTGDKPYICQQCRDTFS 121
R TG KP+ C C +FS
Sbjct: 2 STRGSTGIKPFQCPDCDRSFS 22
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 43.0 bits (101), Expect = 1e-06
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 9/68 (13%)
Query: 55 YTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCEYCAY--------SCTQSSALKIHERKH 105
+CD ++ H+ H G C + S L H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 106 TGDKPYIC 113
TG+K
Sbjct: 86 TGEKSGPS 93
Score = 31.1 bits (70), Expect = 0.037
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIH-ERKHTGDKPYI--------CQQCRDTFSSLYLFR 127
+ + C + + L H +H G C + +F + Y
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 128 NRLQSH 133
N ++ H
Sbjct: 80 NHIRVH 85
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.3 bits (83), Expect = 1e-04
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ KPYKC C+Y+ + L +H RKHTG+K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 32.9 bits (74), Expect = 0.002
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEK 81
Y C C Y + + ++ H+RKHTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.9 bits (82), Expect = 8e-04
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 37 MYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMR-KHTG---EKPYKCEYCAYSC 92
M H + + Y C C + T H+ +H Y C C +
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 93 TQSSALKIHERK-HTGDKPYICQ 114
+ AL H K H G++ +
Sbjct: 61 KRYDALSEHNLKYHPGEENFKLT 83
Score = 32.8 bits (74), Expect = 0.008
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIH-ERKHTG---DKPYICQQC 116
+ + E Y+C+YC + + H + +H + Y+C +C
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVEC 56
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.0 bits (76), Expect = 0.002
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 81 KPYKC--EYCAYSCTQSSALKIHERKHTGDK 109
+P+ C YC T+S L+ H+R HTG+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.2 bits (61), Expect = 0.23
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 67 SEDMKKHMRKHTGEK 81
S+++++H R HTGEK
Sbjct: 17 SDELQRHKRTHTGEK 31
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 32.7 bits (75), Expect = 0.003
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 78 TGEKPYKCEY--CAYSCTQSSALKIHERKHTGDK 109
+K + C C ++S L+ H R HTG++
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 23.5 bits (51), Expect = 6.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 67 SEDMKKHMRKHTGEK 81
+ ++ H+R HTGE+
Sbjct: 23 TSHLRAHLRWHTGER 37
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 34.1 bits (77), Expect = 0.004
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 22 CIHCRLLLVPTAEELM-YHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTGE 80
H + + T EEL YH T K + L +
Sbjct: 15 SNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHN--PQLLDESSYLYRLLASKAI 72
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSS 122
+ C C + S +LK H R +C C+ F+S
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTS 112
Score = 30.7 bits (68), Expect = 0.066
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
++ C C S +K+H+R E C C T + + H K
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 31.1 bits (71), Expect = 0.009
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ + CE C + + LK H R HT +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.7 bits (57), Expect = 0.77
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 54 KYTCYACDYHTLMSEDMKKHMRKHTGEK 81
+ C C E +K+H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 30.9 bits (69), Expect = 0.014
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KPY C +C AL+ H R HTG+K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 32.2 bits (72), Expect = 0.015
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQ 114
Y C C+ + H R C YC+ + HE K K C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCE-YKKLTCL 73
Query: 115 QCRDTFSSLY-LFRNRLQSHG 134
+C TF S + ++R++++ H
Sbjct: 74 ECMRTFKSSFSIWRHQVEVHN 94
Score = 27.6 bits (60), Expect = 0.71
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 71 KKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRL 130
++ Y+C C + HER +C C F S L +
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE 62
Query: 131 QSH 133
Sbjct: 63 SKC 65
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.1 bits (64), Expect = 0.058
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KP+KC C Y+ S LK H +H+ +K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 25.6 bits (55), Expect = 1.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEK 81
+ C C+Y T ++K HM +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 31.0 bits (69), Expect = 0.095
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
+ Y+C C+ L H H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.8 bits (66), Expect = 0.30
Identities = 11/57 (19%), Positives = 14/57 (24%), Gaps = 7/57 (12%)
Query: 85 CEYCAYSCTQSSALKIHERKHTGDKP-------YICQQCRDTFSSLYLFRNRLQSHG 134
+SA+ G P Y C C S + SHG
Sbjct: 148 KPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 27.4 bits (60), Expect = 0.20
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
KP +C C + TQ+S+L H R+HTG+K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.21
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
EK +KC C + + S L HER HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.7 bits (63), Expect = 0.28
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 54 KYTCYACDYHTLMS-EDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKP 110
+C C + E +KKHM ++ + C +C + +K H + P
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 0.47
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ EK ++C C Q +L H+ H G K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.6 bits (58), Expect = 0.56
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHT 106
+G++P+ C C + T + H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 28.2 bits (63), Expect = 0.60
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 9 ASIGL---KNPFTLATCIHCR-----LLLVPTAEEL-MYHCKTCSTVSHPNIS 52
A GL K+ + + R +L+ P+ + L + C+ +
Sbjct: 18 AQTGLAYGKDVYDMERFEEIRQIAAEMLVEPSGQPLEVVKDLFCNETGYQTPK 70
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 26.3 bits (57), Expect = 0.61
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 81 KPYKCEYCAYSCTQSSALKIH-ERKHTGDK 109
K Y+C+YC + SS LK H + KH+ +K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.4 bits (57), Expect = 0.75
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
+GEKPY C C + + H R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.2 bits (59), Expect = 0.91
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 5/63 (7%)
Query: 20 ATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKKHMRKHTG 79
A C C ++ T L H + C + C C + H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDA-----LKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 80 EKP 82
KP
Sbjct: 80 AKP 82
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase;
2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A*
3chu_A 2jcd_A
Length = 336
Score = 27.1 bits (59), Expect = 1.9
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 61 DYHTLMSEDMKKHMRKHTGEKPY 83
+HT M R+
Sbjct: 137 SFHTYMHMLAIDRTRELRKISER 159
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 2.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
K + CEYC +L+ H R HT +K
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 27.1 bits (60), Expect = 2.3
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 16 PFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYAC 60
+ + C C L+ + + ++ Y C++C + S Y YA
Sbjct: 1146 AYRVIVCDICGLIAIASYKKDSYECRSCQ--NRTRFSQVYLPYAA 1188
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.6 bits (58), Expect = 2.6
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 7/33 (21%)
Query: 84 KCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
C C + KI ER GD +C C
Sbjct: 23 TCPEC-----KVYPPKIVERFSEGD--VVCALC 48
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA
BIND protein; 2.50A {Tetrahymena thermophila}
Length = 172
Score = 26.2 bits (57), Expect = 3.1
Identities = 7/84 (8%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 4 YLVCTASIGLKNPFTL--ATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACD 61
+ V + ++ L C ++ + + C++C +P + + D
Sbjct: 25 FYVYGNLVSIQMKNKLYYYRCTCQGKSVLKYHGD-SFFCESCQQFINPQVHLMLRAFVQD 83
Query: 62 YH-----TLMSEDMKKHMRKHTGE 80
+ + + + +
Sbjct: 84 STGTIPVMIFDQQSSQLINQIDPS 107
>1oxw_A Patatin; alpha/beta class fold with approximately three layers;
2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Length = 373
Score = 26.4 bits (57), Expect = 3.1
Identities = 11/124 (8%), Positives = 32/124 (25%), Gaps = 1/124 (0%)
Query: 5 LVCTASIGLKNPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHT 64
++ S G ++T E + ++ + + +P+ Y Y
Sbjct: 59 VIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQILGPKYDGKYLM 118
Query: 65 LMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK-PYICQQCRDTFSSL 123
+ ++ R H + ++ + + T ++
Sbjct: 119 QVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAP 178
Query: 124 YLFR 127
F
Sbjct: 179 TYFP 182
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 25.3 bits (55), Expect = 3.3
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 67 SEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
S H + C++C + LK HE + G + +C C
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSI-LKLKEHE-DYCGARTELCGNC 49
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 24.4 bits (53), Expect = 4.3
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 98 LKIHERKHTGDKPYICQQCRDTFSSL 123
++ ER T + C C TF+ L
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTDL 27
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.9 bits (56), Expect = 4.9
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 57 CYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
Y H++ E + H GEK + E L+ +
Sbjct: 185 DYMKRLHSMSQETI--HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 25.9 bits (56), Expect = 4.9
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 13/65 (20%)
Query: 52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
+ A H + +K + C C Y IH+ G+
Sbjct: 141 VFTRAKLAESVHAERYLAAYNDIDAPDDDKFHLCPICGY---------IHK----GEDFE 187
Query: 112 ICQQC 116
C C
Sbjct: 188 KCPIC 192
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 23.5 bits (50), Expect = 4.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKH 105
KPY CE C QSS L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain;
1.98A {Staphylococcus aureus}
Length = 285
Score = 25.6 bits (57), Expect = 5.6
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 34 EELMYHCKTCSTVSHPN--ISYKYTCYACDYHTLMS 67
+M C C + + C+ CD+H ++
Sbjct: 27 AGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALT 62
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 25.6 bits (56), Expect = 6.4
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 16 PFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSE 68
T+ C C + + Y C S N+ YA L+ E
Sbjct: 1058 RTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKS--NLFPVTVSYAFKL--LIQE 1106
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 25.3 bits (56), Expect = 7.9
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 14/45 (31%)
Query: 30 VPTAEELMYHCKTCSTVSHPNISYK-------YTCYACDYHTLMS 67
+P E + C +C + Y+ C CD+H M+
Sbjct: 19 IP--EGVWTKCDSCGQ-----VLYRAELERNLEVCPKCDHHMRMT 56
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 23.0 bits (49), Expect = 8.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 53 YKYTCYACDYHTLMSEDMKKHMRKHTGEKPYK 84
YK+ C C + S+ + KH+ H +
Sbjct: 1 YKFACPECPKRFMRSDHLSKHITLHELLGEER 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.134 0.446
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,977,967
Number of extensions: 103049
Number of successful extensions: 1119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 486
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)