RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3507
(134 letters)
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 52.1 bits (125), Expect = 4e-11
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 72 KHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
+ + + YKC+ C S + SS L H R HTG
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 30.9 bits (70), Expect = 0.004
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 101 HERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
E + + Y C +C +FS ++H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 27.0 bits (60), Expect = 0.13
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGE 80
Y C C S D+ KH R HTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 49.2 bits (118), Expect = 4e-10
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
H+GEKPY C C + ++SS L H+R HTG
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 28.7 bits (65), Expect = 0.027
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGE 80
Y C C S + +H R HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 28.0 bits (63), Expect = 0.048
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 105 HTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
H+G+KPY C +C FS + + H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 48.5 bits (116), Expect = 1e-09
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 78 TGEKPYKCEYCAYSCTQSSALKIHERK-HTGDKPYICQ 114
+ KPY C+ C ++ L H ++ HT ++P+ CQ
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 36.9 bits (86), Expect = 2e-05
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 55 YTCYACDYHTLMSEDMKKHMRK-HTGEKPYKCE 86
Y C +C + + H+++ HT E+P+KC+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 47.8 bits (114), Expect = 2e-09
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 73 HMRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
R TG KP++C C S ++S L +H ++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 30.9 bits (70), Expect = 0.005
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 101 HERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
R TG KP+ C C +FS + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 47.3 bits (113), Expect = 3e-09
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
R H+GEKPY+C C TQS +K+H + +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 30.0 bits (68), Expect = 0.011
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 103 RKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
R H+G+KPY C C F+ + +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 22.6 bits (49), Expect = 4.3
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEK 81
Y CY C S MK H+ + E
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 47.0 bits (112), Expect = 3e-09
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 75 RKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDK 109
R HTGEKPY C +C + Q L +H +++
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 28.9 bits (65), Expect = 0.030
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 103 RKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
R HTG+KPY C C TF L + +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 25.8 bits (57), Expect = 0.30
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEK 81
Y C CD + + H +++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 42.1 bits (99), Expect = 2e-07
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 77 HTGEKPYKCEYCAYSCTQSSALKIHERKHTG 107
+G++P+ C C + T + H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 25.9 bits (57), Expect = 0.28
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 105 HTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
+G +P++C+ C F++ L+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 22.8 bits (49), Expect = 3.9
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGE 80
+ C C + +H++ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTDT 33
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 41.5 bits (98), Expect = 4e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
+ + CE C + + LK H R HT +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.5 bits (67), Expect = 0.011
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEK 81
+ C C E +K+H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 41.5 bits (97), Expect = 6e-07
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 64 TLMSEDMKKHMRKHTGEKPYKCEYCA--YSCTQSSALKIHERKHTGDK 109
TL + K++ K +K ++C + + + ++ H + H D+
Sbjct: 1 TLPRGSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 29.9 bits (67), Expect = 0.013
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 53 YKYTCYACDYHTLMSEDMKKHMRKHTGEK 81
++ C +++ H++ H ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 23.7 bits (51), Expect = 2.5
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 101 HERKHTGDKPYICQQC 116
K DK + C
Sbjct: 9 KYVKEMPDKTFECLFP 24
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 41.1 bits (97), Expect = 7e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTG 107
+KP++C C + ++S L H R HTG
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 24.5 bits (54), Expect = 0.76
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTG 79
+ C C + S+ + H+R HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 40.8 bits (96), Expect = 7e-07
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDK 109
K + C C +S L H + H K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 30.8 bits (70), Expect = 0.004
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGEK 81
+ C C + S+ + KH++ H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.1 bits (94), Expect = 2e-06
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 52 SYKYTCYACDYHTLMSEDMKKHMRKHTGEKPYKCEY 87
S+ AC + +K+HM+ H+ + Y CE+
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 37.8 bits (88), Expect = 1e-05
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 83 YKCEY--CAYSCTQSSALKIHERKHTGDKPYICQ 114
+ C C S LK H + H+ + YIC+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 36.9 bits (86), Expect = 2e-05
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 81 KPYKCEY--CAYSCTQSSALKIHERKHTGDK 109
+P+ C + C T+S L+ H+R HTG+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.1 bits (63), Expect = 0.040
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 53 YKYTCYACDYHTLMSEDMKKHMRKHTGEK 81
+ T C S+++++H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 36.2 bits (83), Expect = 5e-05
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGD 108
E+P+KC+ C Y+ SS L +H R HTGD
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 22.7 bits (48), Expect = 4.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHTGE 80
+ C C Y + S + H+R HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 35.4 bits (82), Expect = 9e-05
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 81 KPYKCEY--CAYSCTQSSALKIHERKHTGD 108
KP+KC + C S ++ LK H R HTG+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 23.8 bits (52), Expect = 1.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 53 YKYTCYACDYHTLMSEDMKKHMRKHTGE 80
+K T C E++K H+R HTGE
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLRSHTGE 30
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 35.4 bits (81), Expect = 2e-04
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQCRDTFSSLYLFRNRLQSH 133
+K Y C+ C S T S H H G +PY C C F + ++ H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 33.5 bits (76), Expect = 7e-04
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 60 CDYHTLMSEDMKKHMRKHTGEKPYKCEYCAYSCTQSSALKIHERKH 105
C +HM H G +PY C C L H + H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 34.2 bits (79), Expect = 2e-04
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 81 KPYKCEY--CAYSCTQSSALKIHERKHTG 107
+PY C C ++S+ L H R HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 34.2 bits (79), Expect = 2e-04
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 80 EKPYKCEY--CAYSCTQSSALKIHERKHTG 107
++PY C++ C + ++ L H++ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 33.7 bits (78), Expect = 3e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHT 106
KPYKC C + +Q+S L H+R HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 33.5 bits (77), Expect = 5e-04
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 81 KPYKCEY--CAYSCTQSSALKIHERKHTGD 108
KP++C + C + L+ H R HTGD
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 29.2 bits (66), Expect = 0.014
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 81 KPYKCEY--CAYSCTQSSALKIHERKHT 106
+PY C + C QS+ LK H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 29.3 bits (65), Expect = 0.017
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 82 PYKCEYCAYSCTQSSALKIHERKHTGD 108
P KC C+YSC+ +AL+IHER H D
Sbjct: 2 PEKCSECSYSCSSKAALRIHERIHCTD 28
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 29.0 bits (64), Expect = 0.025
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHT 106
KPYKC+ C Y+ SS+L H R H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
Score = 22.4 bits (47), Expect = 6.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 55 YTCYACDYHTLMSEDMKKHMRKHT 78
Y C CDY S + KH+R H+
Sbjct: 4 YKCKTCDYAAADSSSLNKHLRIHS 27
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 28.0 bits (62), Expect = 0.050
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGD 108
+P+KC YC++ Q S L H +K GD
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD 28
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 27.8 bits (61), Expect = 0.059
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 81 KPYKCEYCAYSCTQSSALKIH-ERKHTGDK 109
K Y+C+YC + SS LK H + KH+ +K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 27.5 bits (61), Expect = 0.081
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 83 YKCEYCAYSCTQSSALKIHERKHTGDK 109
Y CE C + S LK H R HT +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
Score = 22.9 bits (49), Expect = 3.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 54 KYTCYACDYHTLMSEDMKKHMRKHTGEK 81
KY C C +KKH+R HT +
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 24.3 bits (52), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 82 PYKCEYCAYSCTQSSALKIHERKHTG 107
P+KCE C ++ LK H R HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
>d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus
influenzae [TaxId: 727]}
Length = 107
Score = 25.5 bits (56), Expect = 1.5
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 11 IGLKNPFTLATCIHCRLLLVPTAEELMYH 39
+GL N + + L+ E+ +H
Sbjct: 74 VGLVNEQDEMDDVFAKFLISHREEDREFH 102
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.2 bits (50), Expect = 2.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKH 105
EKP+ C+ C +S K H + H
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
{Nitrosomonas europaea [TaxId: 915]}
Length = 499
Score = 25.4 bits (54), Expect = 3.4
Identities = 9/103 (8%), Positives = 23/103 (22%), Gaps = 3/103 (2%)
Query: 15 NPFTLATCIHCRLLLVPTAEELMYHCKTCSTVSHPNISYKYTCYACDYHTLMSEDMKK-H 73
+ EE+ + ++ + + C C H +++ K H
Sbjct: 103 DKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDC--HVDVNKKDKADH 160
Query: 74 MRKHTGEKPYKCEYCAYSCTQSSALKIHERKHTGDKPYICQQC 116
+ C C + + +
Sbjct: 161 TKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQWPAGRPS 203
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 22.7 bits (48), Expect = 4.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 81 KPYKCEYCAYSCTQSSALKIHERKHTGDKPY 111
K CE C L H+ H+G+KPY
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 137
Score = 24.1 bits (52), Expect = 5.7
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 35 ELMY-HCKTCSTVSHPNISYKYTCYACD 61
+++ C C + P SY C+
Sbjct: 36 KIIGSKCSKCGRIFVPARSYCEHCFVKI 63
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 22.0 bits (46), Expect = 6.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 83 YKCEYCAYSCTQSSALKIHERKH 105
YKC C S + SAL H+R H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 22.0 bits (46), Expect = 7.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 84 KCEYCAYSCTQSSALKIHERKHTGDK 109
+C C LK+H RKHTG+K
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 21.9 bits (46), Expect = 9.9
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 80 EKPYKCEYCAYSCTQSSALKIHERKHTG 107
EKPY C C + + H R H G
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 28
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 22.4 bits (48), Expect = 9.9
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 98 LKIHERKHTGDKPYICQQCRDTFSSL 123
++ ER T + C C TF+ L
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTDL 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.134 0.446
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,643
Number of extensions: 23412
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 138
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)