Query psy3509
Match_columns 157
No_of_seqs 4 out of 6
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 18:28:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s84_A Apolipoprotein A-IV; fo 97.7 0.012 4.1E-07 47.6 20.3 38 105-142 102-139 (273)
2 3s84_A Apolipoprotein A-IV; fo 97.7 0.012 4E-07 47.6 19.5 7 135-141 176-182 (273)
3 1nfn_A Apolipoprotein E3; lipi 97.1 0.0043 1.5E-07 47.8 9.5 106 41-146 78-183 (191)
4 3r2p_A Apolipoprotein A-I; amp 96.9 0.062 2.1E-06 40.2 14.6 36 106-141 148-183 (185)
5 2a01_A Apolipoprotein A-I; fou 96.9 0.0056 1.9E-07 48.0 8.7 13 132-144 195-207 (243)
6 2lem_A Apolipoprotein A-I; lip 96.1 0.006 2E-07 47.0 4.3 38 105-142 145-182 (216)
7 2l7b_A Apolipoprotein E, APO-E 96.0 0.055 1.9E-06 44.7 9.9 29 116-144 245-273 (307)
8 3r2p_A Apolipoprotein A-I; amp 95.9 0.34 1.2E-05 36.1 14.8 81 63-143 83-163 (185)
9 1nfn_A Apolipoprotein E3; lipi 95.8 0.062 2.1E-06 41.3 8.9 84 63-146 89-172 (191)
10 2l7b_A Apolipoprotein E, APO-E 95.4 0.035 1.2E-06 45.8 6.8 124 21-144 62-189 (307)
11 2lem_A Apolipoprotein A-I; lip 94.9 0.1 3.6E-06 40.1 7.7 51 94-144 145-204 (216)
12 1gs9_A Apolipoprotein E, APOE4 91.9 0.66 2.2E-05 35.1 7.4 70 75-144 90-159 (165)
13 1gs9_A Apolipoprotein E, APOE4 87.0 1.5 5.1E-05 33.1 6.1 25 104-128 130-154 (165)
14 1use_A VAsp, vasodilator-stimu 81.4 4.1 0.00014 26.5 5.4 10 47-56 22-31 (45)
15 3ghg_A Fibrinogen alpha chain; 76.3 47 0.0016 30.5 12.6 24 81-104 107-130 (562)
16 1use_A VAsp, vasodilator-stimu 62.4 19 0.00067 23.3 5.2 12 56-67 20-31 (45)
17 4efa_G V-type proton ATPase su 51.7 35 0.0012 24.9 5.7 27 27-53 37-63 (119)
18 3oja_B Anopheles plasmodium-re 39.8 1.5E+02 0.0052 24.1 15.9 12 80-91 523-534 (597)
19 3oja_A Leucine-rich immune mol 32.6 1.9E+02 0.0066 23.1 15.1 42 100-142 433-474 (487)
20 2o6n_A RH4B designed peptide; 20.9 1.6E+02 0.0054 18.2 4.8 24 43-66 9-32 (35)
No 1
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=97.73 E-value=0.012 Score=47.59 Aligned_cols=38 Identities=26% Similarity=0.559 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 105 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRS 142 (157)
Q Consensus 105 ~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S 142 (157)
++++.-|..++++++.-+.--..+++..|..++.+||.
T Consensus 102 eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~ 139 (273)
T 3s84_A 102 DELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR 139 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444433
No 2
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=97.69 E-value=0.012 Score=47.63 Aligned_cols=7 Identities=43% Similarity=0.548 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy3509 135 RRLKELR 141 (157)
Q Consensus 135 ~~i~E~~ 141 (157)
.++++||
T Consensus 176 ~~~eeLr 182 (273)
T 3s84_A 176 ASAEELR 182 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 3
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=97.07 E-value=0.0043 Score=47.75 Aligned_cols=106 Identities=13% Similarity=0.221 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 41 FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 120 (157)
Q Consensus 41 Fk~Ei~~emeeFk~EI~~emesFk~EI~~~~kEf~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~ 120 (157)
++.-|.--..+|..-+...++.+...+..+|.+++..+.--+.+++.-+...+++++-.+.--.++.+.-+..++++|+.
T Consensus 78 l~~qL~P~~~e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~ 157 (191)
T 1nfn_A 78 LEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQK 157 (191)
T ss_dssp HTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33333333344555566677778888888888888888888888887777777888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3509 121 EIERRLKEFQVEIERRLKELRSSIFS 146 (157)
Q Consensus 121 EI~~~~~EF~~EI~~~i~E~~S~~~~ 146 (157)
=+.--..+++..+..+++++++++-.
T Consensus 158 ~l~P~~eelk~~l~~~veel~~~L~P 183 (191)
T 1nfn_A 158 RLAVYQAGAREGAERGLSAIRERLGP 183 (191)
T ss_dssp HHHHHTC-------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 88888888899999999999887643
No 4
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=96.93 E-value=0.062 Score=40.23 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 106 EFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELR 141 (157)
Q Consensus 106 EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~ 141 (157)
++++-+...+++.+.=..--..+++.-|..++++||
T Consensus 148 ~lr~~l~~~~e~lk~~l~Py~ee~k~kl~~~leeLk 183 (185)
T 3r2p_A 148 EMRDRARAHVDALRTHLAPYSDELRQRLAARLEALK 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 333334444444443333334444444444554444
No 5
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=96.86 E-value=0.0056 Score=47.95 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q psy3509 132 EIERRLKELRSSI 144 (157)
Q Consensus 132 EI~~~i~E~~S~~ 144 (157)
.+...+.+||.++
T Consensus 195 kl~~~~e~lr~~l 207 (243)
T 2a01_A 195 KATEHLSTLSEKA 207 (243)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3334444444444
No 6
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=96.06 E-value=0.006 Score=47.04 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 105 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRS 142 (157)
Q Consensus 105 ~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S 142 (157)
+++++-+...+++++.=+.--..+++..|..++++|+.
T Consensus 145 e~lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~leeL~~ 182 (216)
T 2lem_A 145 EEFRDRMRTHVDSLRTQLAPHSEQMRESLAQRLAELKS 182 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhC
Confidence 34444455555555554444555555555555555554
No 7
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=95.95 E-value=0.055 Score=44.66 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3509 116 KEFQVEIERRLKEFQVEIERRLKELRSSI 144 (157)
Q Consensus 116 ~~F~~EI~~~~~EF~~EI~~~i~E~~S~~ 144 (157)
++++..++....+++.-|..++++||+.+
T Consensus 245 ee~~~ql~~~aeel~~kl~~~~eeLr~~l 273 (307)
T 2l7b_A 245 AEVRAKLEEQAQQIRLQAEAAQARLKSRF 273 (307)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHh
Confidence 44556666666666666666666666654
No 8
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=95.94 E-value=0.34 Score=36.14 Aligned_cols=81 Identities=19% Similarity=0.349 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 63 FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRS 142 (157)
Q Consensus 63 Fk~EI~~~~kEf~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S 142 (157)
++..+..++++++..+..-+.+++.=+...+++++-.+.--..++++-+..++++++.-+..-..++++-+..|++++|+
T Consensus 83 Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~ 162 (185)
T 3r2p_A 83 LRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRT 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444333333344444444444333333333333334444444444443
Q ss_pred h
Q psy3509 143 S 143 (157)
Q Consensus 143 ~ 143 (157)
+
T Consensus 163 ~ 163 (185)
T 3r2p_A 163 H 163 (185)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=95.76 E-value=0.062 Score=41.26 Aligned_cols=84 Identities=12% Similarity=0.198 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 63 FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRS 142 (157)
Q Consensus 63 Fk~EI~~~~kEf~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S 142 (157)
|..-+..++..++.++...|++.+.-+.--+.+++--+...+++++..+.--.++.+.=+..++.+|+.=+.--.+++++
T Consensus 89 ~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eelk~ 168 (191)
T 1nfn_A 89 TRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGARE 168 (191)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred hhhh
Q psy3509 143 SIFS 146 (157)
Q Consensus 143 ~~~~ 146 (157)
.+..
T Consensus 169 ~l~~ 172 (191)
T 1nfn_A 169 GAER 172 (191)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 10
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=95.42 E-value=0.035 Score=45.80 Aligned_cols=124 Identities=17% Similarity=0.312 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 21 VEIERRLKEFQVEIERRLKEFQVEIERRL----KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 96 (157)
Q Consensus 21 ~Emk~emesFk~Ei~~emesFk~Ei~~em----eeFk~EI~~emesFk~EI~~~~kEf~veI~~~~~~F~~E~~~~~~EF 96 (157)
+++-+++.....++...+.+....++..| .+|...+-...+.++..|..++.+++..+.--+.+++.=+...|+++
T Consensus 62 s~l~kel~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eel 141 (307)
T 2l7b_A 62 SQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEEL 141 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544333333333 34455566666666666667777777766666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3509 97 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSI 144 (157)
Q Consensus 97 ~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S~~ 144 (157)
+-.+..-..++++-+..++++++.-+..-..+.+.-|..|+++||+++
T Consensus 142 r~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L 189 (307)
T 2l7b_A 142 RVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERL 189 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 666666666677777777777776666666677777788888888776
No 11
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=94.95 E-value=0.1 Score=40.07 Aligned_cols=51 Identities=16% Similarity=0.368 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhh
Q psy3509 94 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV---------EIERRLKELRSSI 144 (157)
Q Consensus 94 ~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~---------EI~~~i~E~~S~~ 144 (157)
++++--+...+++++.=+.--.++++..|...+.+++. -|..++++||.++
T Consensus 145 e~lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~leeL~~~p~~~e~~~ki~~~~e~Lr~~l 204 (216)
T 2lem_A 145 EEFRDRMRTHVDSLRTQLAPHSEQMRESLAQRLAELKSNPTLNEYHSSAKSHLKSLGEKA 204 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCSSSHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555556666666666666655 4555666666655
No 12
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=91.88 E-value=0.66 Score=35.13 Aligned_cols=70 Identities=13% Similarity=0.310 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3509 75 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSI 144 (157)
Q Consensus 75 ~veI~~~~~~F~~E~~~~~~EF~~EI~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S~~ 144 (157)
...+...+..++..+...+++++-.+.--+.+++.=+.-.+++++..+...+.+++.-+..++++|+.++
T Consensus 90 ~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 90 RARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3333444444444444444444444444444555444444555555555555555566666666665544
No 13
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=87.04 E-value=1.5 Score=33.14 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 104 LKEFQVEIERRLKEFQVEIERRLKE 128 (157)
Q Consensus 104 ~~EF~~EI~~~~~~F~~EI~~~~~E 128 (157)
+++++..+...+++++.-+..++.+
T Consensus 130 ~EelR~kl~P~~eeL~~~~~~~~ee 154 (165)
T 1gs9_A 130 TEELRVRLASHLRKLRKRLLRDADD 154 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333333333333333333333333
No 14
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=81.38 E-value=4.1 Score=26.50 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy3509 47 RRLKEFQVEI 56 (157)
Q Consensus 47 ~emeeFk~EI 56 (157)
+++.-.|+||
T Consensus 22 kElqK~K~EI 31 (45)
T 1use_A 22 KELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.25 E-value=47 Score=30.54 Aligned_cols=24 Identities=4% Similarity=0.278 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 81 RLKEFQVEIERRLKEFQVEIERRL 104 (157)
Q Consensus 81 ~~~~F~~E~~~~~~EF~~EI~~~~ 104 (157)
...++-.|+++++...+.+|.+.+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544
No 16
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=62.43 E-value=19 Score=23.30 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy3509 56 IERRLKEFQVEI 67 (157)
Q Consensus 56 I~~emesFk~EI 67 (157)
+|+++.-.|.||
T Consensus 20 ~RkElqK~K~EI 31 (45)
T 1use_A 20 VKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444445444
No 17
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=51.72 E-value=35 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.632 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 27 LKEFQVEIERRLKEFQVEIERRLKEFQ 53 (157)
Q Consensus 27 mesFk~Ei~~emesFk~Ei~~emeeFk 53 (157)
|+.-+.|-.++++.|+.+-+++.+.|.
T Consensus 37 LKqAK~EA~~EIe~yR~qkE~eFk~~e 63 (119)
T 4efa_G 37 LKQAKTDAAKEIDSYKIQKDKELKEFE 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.85 E-value=1.5e+02 Score=24.08 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy3509 80 RRLKEFQVEIER 91 (157)
Q Consensus 80 ~~~~~F~~E~~~ 91 (157)
+....++..+..
T Consensus 523 ~~~~~~~~~~~~ 534 (597)
T 3oja_B 523 RETQARRTEADA 534 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 333444444433
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.58 E-value=1.9e+02 Score=23.14 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 100 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRS 142 (157)
Q Consensus 100 I~~~~~EF~~EI~~~~~~F~~EI~~~~~EF~~EI~~~i~E~~S 142 (157)
.+++++..+.+|+.-.+ =+.-.+..+-++...|......++.
T Consensus 433 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccHHHH
Confidence 56677777777665433 3344556666666666655555543
No 20
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=20.95 E-value=1.6e+02 Score=18.17 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3509 43 VEIERRLKEFQVEIERRLKEFQVE 66 (157)
Q Consensus 43 ~Ei~~emeeFk~EI~~emesFk~E 66 (157)
.||---++.-+.||-.+++.-++|
T Consensus 9 keiaylikkakeeileeikkakqe 32 (35)
T 2o6n_A 9 KEIAYLIKKAKEEILEEIKKAKQE 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444433333
Done!