RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3509
(157 letters)
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 35.3 bits (82), Expect = 0.009
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 11 EIERRLKEFQVEIER--RLKEFQVEIE--RRLKEFQVEIERRLKEFQVEIERRLKEFQVE 66
E+E +KE + EIER F +++ K V + ++ E++ VE
Sbjct: 111 ELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVE 170
Query: 67 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 126
K + + LKE E+E LK+ E ++E E E EI+ L
Sbjct: 171 YISTDKGYVYVVVVVLKELSDEVEEELKKLGFE------RLELEEEGTPSELIREIKEEL 224
Query: 127 KEFQVEIERRLKELRS 142
+E + E E L+EL+
Sbjct: 225 EEIEKERESLLEELKE 240
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 35.1 bits (82), Expect = 0.011
Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 12 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI---E 68
E ++KE + E +R L+E + E E KE +E + + + + E E+ L+E + E+ E
Sbjct: 29 AEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE 88
Query: 69 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF---QVEIERRLKEFQVEIER 124
+RL + + ++R+L+ + E L++ + E+E++ +E + E+E ++E E+ER
Sbjct: 89 KRLLQKEENLDRKLELLEKR-EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
Score = 33.2 bits (77), Expect = 0.047
Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 4 KGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI---ERRL 60
K K + E +R L+E + E E KE +E + + + + E E+ L+E + E+ E+RL
Sbjct: 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRL 91
Query: 61 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF---QVEIERRLKEFQVEIER 113
+ + ++R+L+ + E L++ + E+E++ +E + E+E ++E E+ER
Sbjct: 92 LQKEENLDRKLELLEKR-EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
Score = 27.4 bits (62), Expect = 3.2
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 67 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI---E 123
E ++KE + E +R L+E + E E KE +E + + + + E E+ L+E + E+ E
Sbjct: 29 AEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE 88
Query: 124 RRLKEFQVEIERRLKELR 141
+RL + + ++R+L+ L
Sbjct: 89 KRLLQKEENLDRKLELLE 106
Score = 26.7 bits (60), Expect = 7.2
Identities = 23/97 (23%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 1 MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEI---ERRLKEFQVEIERRLKEFQVEIE 57
+ K +E + + + + E E+ L+E + E+ E+RL + + ++R+L+ + E
Sbjct: 51 AEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR-E 109
Query: 58 RRLKEFQVEIERRLKEF---QVEIERRLKEFQVEIER 91
L++ + E+E++ +E + E+E ++E E+ER
Sbjct: 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 33.4 bits (77), Expect = 0.023
Identities = 23/91 (25%), Positives = 49/91 (53%)
Query: 17 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 76
K Q ++E+ K+ Q E++++ KE Q E ++ K+ E K Q E++++ +E Q
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 77 EIERRLKEFQVEIERRLKEFQVEIERRLKEF 107
+ + +E Q + + L+ +I++ +KE
Sbjct: 94 KQQAAQQELQQKQQELLQPIYDKIDKAIKEV 124
Score = 33.4 bits (77), Expect = 0.023
Identities = 23/91 (25%), Positives = 49/91 (53%)
Query: 28 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 87
K Q ++E+ K+ Q E++++ KE Q E ++ K+ E K Q E++++ +E Q
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 88 EIERRLKEFQVEIERRLKEFQVEIERRLKEF 118
+ + +E Q + + L+ +I++ +KE
Sbjct: 94 KQQAAQQELQQKQQELLQPIYDKIDKAIKEV 124
Score = 33.4 bits (77), Expect = 0.023
Identities = 23/91 (25%), Positives = 49/91 (53%)
Query: 39 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 98
K Q ++E+ K+ Q E++++ KE Q E ++ K+ E K Q E++++ +E Q
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 99 EIERRLKEFQVEIERRLKEFQVEIERRLKEF 129
+ + +E Q + + L+ +I++ +KE
Sbjct: 94 KQQAAQQELQQKQQELLQPIYDKIDKAIKEV 124
Score = 33.0 bits (76), Expect = 0.027
Identities = 23/91 (25%), Positives = 50/91 (54%)
Query: 50 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 109
K Q ++E+ K+ Q E++++ KE Q E ++ K+ E K Q E++++ +E Q
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 110 EIERRLKEFQVEIERRLKEFQVEIERRLKEL 140
+ + +E Q + + L+ +I++ +KE+
Sbjct: 94 KQQAAQQELQQKQQELLQPIYDKIDKAIKEV 124
Score = 31.8 bits (73), Expect = 0.078
Identities = 24/93 (25%), Positives = 50/93 (53%)
Query: 4 KGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 63
GK Q ++E+ K+ Q E++++ KE Q E ++ K+ E K Q E++++ +E
Sbjct: 32 AGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQEL 91
Query: 64 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 96
Q + + +E Q + + L+ +I++ +KE
Sbjct: 92 QQKQQAAQQELQQKQQELLQPIYDKIDKAIKEV 124
Score = 29.9 bits (68), Expect = 0.32
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 61 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 120
K Q ++E+ K+ Q E++++ KE Q E ++ K+ E K Q E++++ +E Q
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 121 EIERRLKEFQVEIERRLKELRSSI 144
+ + +E Q + + L+ + I
Sbjct: 94 KQQAAQQELQQKQQELLQPIYDKI 117
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 34.1 bits (78), Expect = 0.025
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 61 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 120
K+F VEIE + E E + L+E + E+E+ KE + E ER Q E +RR +E +
Sbjct: 231 KDFCVEIEGGMDEHSFE-DFLLEEKRRELEKLAKE-EAERER-----QAEEQRRREEEKA 283
Query: 121 EIERRLKEFQVEIERRLKELRSSI 144
+E + + E+E+R ++L++ +
Sbjct: 284 AMEADRAQAKAEVEKRREKLQNLL 307
Score = 32.1 bits (73), Expect = 0.12
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 17 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 76
K+F VEIE + E E + L+E + E+E+ KE + E ER Q E +RR +E +
Sbjct: 231 KDFCVEIEGGMDEHSFE-DFLLEEKRRELEKLAKE-EAERER-----QAEEQRRREEEKA 283
Query: 77 EIERRLKEFQVEIERRLKEFQ 97
+E + + E+E+R ++ Q
Sbjct: 284 AMEADRAQAKAEVEKRREKLQ 304
Score = 32.1 bits (73), Expect = 0.12
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 28 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 87
K+F VEIE + E E + L+E + E+E+ KE + E ER Q E +RR +E +
Sbjct: 231 KDFCVEIEGGMDEHSFE-DFLLEEKRRELEKLAKE-EAERER-----QAEEQRRREEEKA 283
Query: 88 EIERRLKEFQVEIERRLKEFQ 108
+E + + E+E+R ++ Q
Sbjct: 284 AMEADRAQAKAEVEKRREKLQ 304
Score = 29.8 bits (67), Expect = 0.71
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 72 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 131
K+F VEIE + E E + L+E + E+E+ KE + E ER Q E +RR +E +
Sbjct: 231 KDFCVEIEGGMDEHSFE-DFLLEEKRRELEKLAKE-EAERER-----QAEEQRRREEEKA 283
Query: 132 EIERRLKELRSSIFSRHEKLGM 153
+E + ++ + R EKL
Sbjct: 284 AMEADRAQAKAEVEKRREKLQN 305
Score = 27.9 bits (62), Expect = 2.3
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 16 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 75
L+E + E+E+ KE + E ER Q E +RR +E + +E + + E+E+R ++ Q
Sbjct: 251 LEEKRRELEKLAKE-EAERER-----QAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQ 304
>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain. These
proteins contain several 22 residue repeats which form a
pair of alpha helices. This family includes:
Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein
E.
Length = 191
Score = 32.6 bits (75), Expect = 0.047
Identities = 18/128 (14%), Positives = 66/128 (51%)
Query: 16 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 75
+ + E+++ L++ + ++ L E + ++ + L+E + + +E + + R +E +
Sbjct: 36 TEALREELQKDLEDVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRKRLNRDAEELR 95
Query: 76 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 135
++ +E + + + ++ + + ++E + ++ RL+E + + +E++ ++
Sbjct: 96 RKLAPYAEELRDRLRQNVEALRARLGPYVEELRQKLAERLEELKESVGPYAEEYKAQLSE 155
Query: 136 RLKELRSS 143
+++ELR
Sbjct: 156 QVEELREK 163
Score = 32.6 bits (75), Expect = 0.050
Identities = 18/134 (13%), Positives = 68/134 (50%)
Query: 16 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 75
L E + ++ + L+E + + +E + + R +E + ++ +E + + + ++ +
Sbjct: 58 LDELKAKVGQNLEELRQRLAPYAEELRKRLNRDAEELRRKLAPYAEELRDRLRQNVEALR 117
Query: 76 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 135
+ ++E + ++ RL+E + + +E++ ++ +++E + ++E ++ + ++E
Sbjct: 118 ARLGPYVEELRQKLAERLEELKESVGPYAEEYKAQLSEQVEELREKLEPYAEDLREKLEP 177
Query: 136 RLKELRSSIFSRHE 149
++L+ + E
Sbjct: 178 YAEDLKKQLAQLLE 191
Score = 29.1 bits (66), Expect = 0.63
Identities = 15/129 (11%), Positives = 67/129 (51%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
+ ++ + L+E + + +E + + R +E + ++ +E + + + ++ + +
Sbjct: 62 KAKVGQNLEELRQRLAPYAEELRKRLNRDAEELRRKLAPYAEELRDRLRQNVEALRARLG 121
Query: 69 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 128
++E + ++ RL+E + + +E++ ++ +++E + ++E ++ + ++E ++
Sbjct: 122 PYVEELRQKLAERLEELKESVGPYAEEYKAQLSEQVEELREKLEPYAEDLREKLEPYAED 181
Query: 129 FQVEIERRL 137
+ ++ + L
Sbjct: 182 LKKQLAQLL 190
Score = 28.3 bits (64), Expect = 1.4
Identities = 20/141 (14%), Positives = 70/141 (49%)
Query: 17 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 76
+EF + + + + E+++ L++ + ++ L E + ++ + L+E + + +E +
Sbjct: 26 QEFWARLSKETEALREELQKDLEDVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRK 85
Query: 77 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 136
+ R +E + ++ +E + + + ++ + + ++E + ++ RL+E + +
Sbjct: 86 RLNRDAEELRRKLAPYAEELRDRLRQNVEALRARLGPYVEELRQKLAERLEELKESVGPY 145
Query: 137 LKELRSSIFSRHEKLGMQTWP 157
+E ++ + + E+L + P
Sbjct: 146 AEEYKAQLSEQVEELREKLEP 166
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 33.1 bits (76), Expect = 0.052
Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
Query: 12 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 71
+ L + ++ E + E+ER LKE + E+ +L+E E+ RL+ + +E++L
Sbjct: 168 AKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEE---ELLARLESKEAALEKQL 224
Query: 72 K-EFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 130
+ EF+ E E K+++ ++ + L+ E++LK E+ + E Q E + +KE +
Sbjct: 225 RLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKN---ELALQAIELQREFNKEIKE-K 280
Query: 131 VEIER-----RLKELRSSI 144
VE ER +L EL S +
Sbjct: 281 VEEERNGRLAKLAELNSRL 299
Score = 30.0 bits (68), Expect = 0.47
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 56 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 115
+ L + ++ E + E+ER LKE + E+ +L+E E+ RL+ + +E++L
Sbjct: 168 AKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEE---ELLARLESKEAALEKQL 224
Query: 116 K-EFQVEIERRLKEFQVEIERRLKELRSSIFSRHEK 150
+ EF+ E E K+++ ++ + L+ + + +
Sbjct: 225 RLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKN 260
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 33.0 bits (76), Expect = 0.055
Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 12/128 (9%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI--- 67
E++L + +R ++E + E E KE +E + + + + E+ER LKE + E+
Sbjct: 22 IAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRL 81
Query: 68 ERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK 127
ERRL + + ++R+++ + E L++ + E+ + E+ L E + E+E +
Sbjct: 82 ERRLLQREETLDRKMESLD-KKEENLEKKEKELSNK--------EKNLDEKEEELEELIA 132
Query: 128 EFQVEIER 135
E + E+ER
Sbjct: 133 EQREELER 140
Score = 27.2 bits (61), Expect = 4.4
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI---ERRLKEFQVEIERRLKEFQV 65
+ E E KE +E + + + + E+ER LKE + E+ ERRL + + ++R+++
Sbjct: 42 KKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLD- 100
Query: 66 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 113
+ E L++ + E+ + E+ L E + E+E + E + E+ER
Sbjct: 101 KKEENLEKKEKELSNK--------EKNLDEKEEELEELIAEQREELER 140
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 32.0 bits (73), Expect = 0.12
Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 11 EIERRLKEFQVEIERRLKEFQV-EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 69
ER E + + +E++ E+ + + + + E ++ +E L++ EI
Sbjct: 204 RREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLA-SLEEELEKLTEEISE 262
Query: 70 RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER------RLKEFQVEIE 123
K EIE+ L+E +I+ +E Q+ ++ ++ E + EI + + E
Sbjct: 263 LEKRL-EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
Query: 124 RRLKEFQVEIERRLKELRSS 143
RL + + EI++ L E+
Sbjct: 322 ERLAKLEAEIDKLLAEIEEL 341
Score = 30.0 bits (68), Expect = 0.55
Identities = 25/125 (20%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 22 EIERRLKEFQVEIERRLKEFQ-VEIERRLKEFQVEIERRLKEFQV-EIERRLKEFQVEIE 79
E+E ++ + I+ + ++ + + ER E + + +E++ E+ + + + + E
Sbjct: 181 EVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKE 240
Query: 80 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 139
++ +E L++ EI K EIE+ L+E +I+ +E Q+ ++ ++ E
Sbjct: 241 AIERQLA-SLEEELEKLTEEISELEKRL-EEIEQLLEELNKKIKDLGEEEQLRVKEKIGE 298
Query: 140 LRSSI 144
L + I
Sbjct: 299 LEAEI 303
Score = 29.7 bits (67), Expect = 0.78
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 13 ERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK 72
E +LKE E+E L + EIE +K E+E R++E + ++ +L+E ++E RL
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIE-NVKSELKELEARIEELEEDLH-KLEEALNDLEARLS 789
Query: 73 EFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLKEFQVEIERRLKEFQ 130
++ + E R++ EIE++L + E + + E LKE
Sbjct: 790 HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
Query: 131 VEIERRLKELRSSIFSRHEKL 151
IE+ ++ L E+L
Sbjct: 850 KSIEKEIENLNGKKEELEEEL 870
Score = 28.9 bits (65), Expect = 1.4
Identities = 35/149 (23%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Query: 16 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE------R 69
L+E ++E RL ++ + E R++ EIE++L +E E +
Sbjct: 777 LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
Query: 70 RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI---ERRLKEFQVEIERRL 126
L+E +++++ ++K + EIE L + E+E L+E + + E RL + + E +
Sbjct: 837 ELQEQRIDLKEQIKSIEKEIE-NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895
Query: 127 KEFQVEIERRLKELRSSIFSRHEKLGMQT 155
+ + E+ER+++EL + I + ++L
Sbjct: 896 AQLR-ELERKIEELEAQIEKKRKRLSELK 923
Score = 28.5 bits (64), Expect = 1.8
Identities = 35/148 (23%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 10 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER------RLKEFQVEIERRLKEF 63
EIE+ L+E +I+ +E Q+ ++ ++ E + EI + + E RL +
Sbjct: 268 EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
Query: 64 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 123
+ EI++ L E + E+ER ++E + ++ +E+ E++ L++ + E+E KEF E
Sbjct: 328 EAEIDKLLAEIE-ELEREIEEERKRRDKLTEEYA-ELKEELEDLRAELEEVDKEFA-ETR 384
Query: 124 RRLKEFQVEIERRLKELRSSIFSRHEKL 151
LK+++ ++E+ +E+
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQ 412
>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion
transport and metabolism].
Length = 653
Score = 31.9 bits (73), Expect = 0.13
Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 3 IKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLK--EFQVEIERRLKEFQVEIERRL 60
+G+ + ++ + + R ++ EIE +K E E R L +E + +
Sbjct: 147 KRGEGLEELKRAIIELAESKTTPREVDYGEEIEEEIKELEALSEDPRWLAIKLLEDDELV 206
Query: 61 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 120
+ E E+R++E E+ + + R IER L+ + E
Sbjct: 207 EAVLKEPEKRVEELLEELSEEEGHLLLIADARY----ALIERILRSVVKQEEEEKSSLTD 262
Query: 121 EIER 124
+I+R
Sbjct: 263 KIDR 266
>gnl|CDD|227605 COG5280, COG5280, Phage-related minor tail protein [Function
unknown].
Length = 634
Score = 30.6 bits (69), Expect = 0.35
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 25/141 (17%)
Query: 15 RLKEFQVEIERRLKEFQVEIERRLKEFQ---VEIERRLKEFQVEIER-------RLKEFQ 64
R+ +EI+ LK ER +E E++ + F+ I R++
Sbjct: 5 RIGGLTIEIDGDLKGLNGAFERVKRESNSLGSELKDAGELFKRNISASTEALAQRIQLLT 64
Query: 65 VEIERRLK--------EFQVEIERRLKEFQVEIERRLK-EFQVEIERRLKEFQVEIERRL 115
++ +K + QV+ + E E ER E +V E L E L
Sbjct: 65 GQVTLTVKNLDDLAKQQAQVDAQFGSGEIGEEAERLFTREIRV-TEGGLTGSLSE----L 119
Query: 116 KEFQVEIERRLKEFQVEIERR 136
E V + R + + E R
Sbjct: 120 NEPTVSV-REHGKGLKDEELR 139
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 30.3 bits (69), Expect = 0.37
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 70
E++ LKE + E++ L+E +I++ LK+ + +L + E +L E + ++
Sbjct: 331 ELKEELKELEEELKE-LEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEE 389
Query: 71 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 104
L+E +E LKE + E+E E ++ + + +
Sbjct: 390 LEE----LEEELKELKEELESLYSEGKISVNKTI 419
Score = 30.3 bits (69), Expect = 0.37
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 22 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 81
E++ LKE + E++ L+E +I++ LK+ + +L + E +L E + ++
Sbjct: 331 ELKEELKELEEELKE-LEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEE 389
Query: 82 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 115
L+E +E LKE + E+E E ++ + + +
Sbjct: 390 LEE----LEEELKELKEELESLYSEGKISVNKTI 419
Score = 30.3 bits (69), Expect = 0.37
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 33 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 92
E++ LKE + E++ L+E +I++ LK+ + +L + E +L E + ++
Sbjct: 331 ELKEELKELEEELKE-LEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEE 389
Query: 93 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 126
L+E +E LKE + E+E E ++ + + +
Sbjct: 390 LEE----LEEELKELKEELESLYSEGKISVNKTI 419
Score = 30.3 bits (69), Expect = 0.37
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 44 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 103
E++ LKE + E++ L+E +I++ LK+ + +L + E +L E + ++
Sbjct: 331 ELKEELKELEEELKE-LEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEE 389
Query: 104 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 137
L+E +E LKE + E+E E ++ + + +
Sbjct: 390 LEE----LEEELKELKEELESLYSEGKISVNKTI 419
Score = 28.4 bits (64), Expect = 1.7
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 55 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 114
E++ LKE + E++ L+E +I++ LK+ + +L + E +L E + ++
Sbjct: 331 ELKEELKELEEELKE-LEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEE 389
Query: 115 LKEFQVEIERRLKEFQVEIERRLKE 139
L+E +E LKE + E+E E
Sbjct: 390 LEE----LEEELKELKEELESLYSE 410
>gnl|CDD|224208 COG1289, COG1289, Predicted membrane protein [Function unknown].
Length = 674
Score = 30.5 bits (69), Expect = 0.40
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 10/121 (8%)
Query: 1 MKIKGKHCQVEIERRLKEFQV--EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 58
++ G R L+ + + ++ R +E +I RL +
Sbjct: 214 LRSAGFEGSRGRRRNLRLYFLAQDLLERASSLHQYLELAEALRPTDILERL--------Q 265
Query: 59 RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 118
RL + + L + IER + + R E V RL + +L +
Sbjct: 266 RLLAELAQALQALAQVAQRIERARQALDASLRRAESEALVARLSRLAANLRALLLQLAQL 325
Query: 119 Q 119
Sbjct: 326 L 326
Score = 30.1 bits (68), Expect = 0.45
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 8/105 (7%)
Query: 36 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 95
RL ++ R +E +I RL +RL + + L +
Sbjct: 229 LRLYFLAQDLLERASSLHQYLELAEALRPTDILERL--------QRLLAELAQALQALAQ 280
Query: 96 FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEL 140
IER + + R E V RL + +L +L
Sbjct: 281 VAQRIERARQALDASLRRAESEALVARLSRLAANLRALLLQLAQL 325
Score = 29.7 bits (67), Expect = 0.67
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 25 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 84
RL ++ R +E +I RL +RL + + L +
Sbjct: 229 LRLYFLAQDLLERASSLHQYLELAEALRPTDILERL--------QRLLAELAQALQALAQ 280
Query: 85 FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 130
IER + + R E V RL + +L +
Sbjct: 281 VAQRIERARQALDASLRRAESEALVARLSRLAANLRALLLQLAQLL 326
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 30.2 bits (68), Expect = 0.44
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 12 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 71
+E+ ++E + I + ++ + E+E+ +++ E E K V +E LKE + + E L
Sbjct: 366 LEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKR--VALEEGLKELEQDEENFL 423
Query: 72 KEFQVEIERRLKEFQVEIERRLKEFQVEIERR 103
KE E + L++ ++E K F + R
Sbjct: 424 KELSKEEKELLEKLKMEASEVEKLFGRALPVR 455
Score = 30.2 bits (68), Expect = 0.44
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 23 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 82
+E+ ++E + I + ++ + E+E+ +++ E E K V +E LKE + + E L
Sbjct: 366 LEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKR--VALEEGLKELEQDEENFL 423
Query: 83 KEFQVEIERRLKEFQVEIERRLKEFQVEIERR 114
KE E + L++ ++E K F + R
Sbjct: 424 KELSKEEKELLEKLKMEASEVEKLFGRALPVR 455
Score = 30.2 bits (68), Expect = 0.44
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 34 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 93
+E+ ++E + I + ++ + E+E+ +++ E E K V +E LKE + + E L
Sbjct: 366 LEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKR--VALEEGLKELEQDEENFL 423
Query: 94 KEFQVEIERRLKEFQVEIERRLKEFQVEIERR 125
KE E + L++ ++E K F + R
Sbjct: 424 KELSKEEKELLEKLKMEASEVEKLFGRALPVR 455
Score = 30.2 bits (68), Expect = 0.44
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 45 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 104
+E+ ++E + I + ++ + E+E+ +++ E E K V +E LKE + + E L
Sbjct: 366 LEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKR--VALEEGLKELEQDEENFL 423
Query: 105 KEFQVEIERRLKEFQVEIERRLKEFQVEIERR 136
KE E + L++ ++E K F + R
Sbjct: 424 KELSKEEKELLEKLKMEASEVEKLFGRALPVR 455
Score = 28.3 bits (63), Expect = 1.6
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKEF--QVEIERRLKEFQVEIERRLKEFQVEIE 68
E E+ + + +IE L++ ++ + + +V +E LKE + + E LKE E +
Sbjct: 372 EGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEK 431
Query: 69 RRLKEFQVEIERRLKEFQVEIERR 92
L++ ++E K F + R
Sbjct: 432 ELLEKLKMEASEVEKLFGRALPVR 455
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 29.7 bits (68), Expect = 0.52
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 39 KEFQVEIERRLKEFQVEIERRL--KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 96
+E + ++E ++E + EI +E++ E +EFQ + E +E +E KE
Sbjct: 87 RELKKDMEELVEELKKEIPAAFESEEYEARKEEIEEEFQEKREEAFEE----LEEEAKEK 142
Query: 97 QVEIERR--------LKEFQV----EIERRLKEFQVEIERRLKEFQVEIERRLKELRSSI 144
+ R LK+ + E E +E + E+E ++ E + E++ L++LR
Sbjct: 143 GFALVRTPGGFVFAPLKDGEPLTEEEFEALPEEEREELEEKIDELEEELQEILRQLRELE 202
Query: 145 FSRHEKL 151
EKL
Sbjct: 203 REAREKL 209
Score = 26.7 bits (60), Expect = 6.2
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 9 QVEIERRL--KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR------- 59
+ EI +E++ E +EFQ + E + E+E KE + R
Sbjct: 101 KKEIPAAFESEEYEARKEEIEEEFQEKREEAFE----ELEEEAKEKGFALVRTPGGFVFA 156
Query: 60 -LKEFQV----EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 114
LK+ + E E +E + E+E ++ E + E++ L++ + E+ER +E E++R
Sbjct: 157 PLKDGEPLTEEEFEALPEEEREELEEKIDELEEELQEILRQLR-ELEREAREKLRELDRE 215
Query: 115 LKEFQVE 121
+ F V
Sbjct: 216 VALFAVG 222
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 29.2 bits (66), Expect = 0.75
Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 23/135 (17%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 70
E+ L E E+ + ++ ++ K ++ + + EI+R E
Sbjct: 3 ELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDR-------LEELL 55
Query: 71 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK-------------- 116
+ E E K E L+ + K
Sbjct: 56 DELEAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKALSTGTDSDGGYLV 115
Query: 117 --EFQVEIERRLKEF 129
EF EI L+E+
Sbjct: 116 PEEFSTEIIELLREY 130
Score = 26.2 bits (58), Expect = 8.5
Identities = 8/63 (12%), Positives = 22/63 (34%)
Query: 77 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 136
E+ L E E+ + ++ ++ K ++ + + EI+R + +
Sbjct: 3 ELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKP 62
Query: 137 LKE 139
Sbjct: 63 AAS 65
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate
pyrophosphohydrolases/synthetases [Signal transduction
mechanisms / Transcription].
Length = 701
Score = 29.5 bits (67), Expect = 0.78
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 99 EIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLKELRS 142
I + L E ++E E+ ++ E+ LK + E+ R K + S
Sbjct: 202 RIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVSGRPKHIYS 247
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLK 50
I + L E ++E E+ ++ E+ LK + E+ R K
Sbjct: 202 RIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVSGRPK 243
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 22 EIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLK 61
I + L E ++E E+ ++ E+ LK + E+ R K
Sbjct: 202 RIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVSGRPK 243
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 33 EIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLK 72
I + L E ++E E+ ++ E+ LK + E+ R K
Sbjct: 202 RIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVSGRPK 243
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 44 EIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLK 83
I + L E ++E E+ ++ E+ LK + E+ R K
Sbjct: 202 RIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVSGRPK 243
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 55 EIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLK 94
I + L E ++E E+ ++ E+ LK + E+ R K
Sbjct: 202 RIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVSGRPK 243
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 66 EIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLK 105
I + L E ++E E+ ++ E+ LK + E+ R K
Sbjct: 202 RIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVSGRPK 243
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 77 EIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLK 116
I + L E ++E E+ ++ E+ LK + E+ R K
Sbjct: 202 RIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVSGRPK 243
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 88 EIERRLKEFQVEIERRLKEFQVEIERRLKE--FQVEIERRLK 127
I + L E ++E E+ ++ E+ LK + E+ R K
Sbjct: 202 RIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVSGRPK 243
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 28.6 bits (65), Expect = 1.4
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 79 ERRLKEFQVEIERRLKE---FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 135
ER L++ E E LKE + E+E + ++ Q E ++ L+E + E ++ +KE + E +
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588
Query: 136 RLKELR 141
+KELR
Sbjct: 589 IIKELR 594
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 28.6 bits (64), Expect = 1.5
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 10 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 69
E + L++F E F I R L + +E R K E R
Sbjct: 227 QECTTAANFLAATDKGALRDFMNE------YFARYIAR-LTKMLPLVEERAKHVVSENLR 279
Query: 70 RLKEFQVEIERRLKEF 85
LK + + K+F
Sbjct: 280 VLKAVKAMKDNDFKQF 295
Score = 28.6 bits (64), Expect = 1.5
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 21 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 80
E + L++F E F I R L + +E R K E R
Sbjct: 227 QECTTAANFLAATDKGALRDFMNE------YFARYIAR-LTKMLPLVEERAKHVVSENLR 279
Query: 81 RLKEFQVEIERRLKEF 96
LK + + K+F
Sbjct: 280 VLKAVKAMKDNDFKQF 295
Score = 28.6 bits (64), Expect = 1.5
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 32 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 91
E + L++F E F I R L + +E R K E R
Sbjct: 227 QECTTAANFLAATDKGALRDFMNE------YFARYIAR-LTKMLPLVEERAKHVVSENLR 279
Query: 92 RLKEFQVEIERRLKEF 107
LK + + K+F
Sbjct: 280 VLKAVKAMKDNDFKQF 295
Score = 28.6 bits (64), Expect = 1.5
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 43 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 102
E + L++F E F I R L + +E R K E R
Sbjct: 227 QECTTAANFLAATDKGALRDFMNE------YFARYIAR-LTKMLPLVEERAKHVVSENLR 279
Query: 103 RLKEFQVEIERRLKEF 118
LK + + K+F
Sbjct: 280 VLKAVKAMKDNDFKQF 295
Score = 28.6 bits (64), Expect = 1.5
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 54 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 113
E + L++F E F I R L + +E R K E R
Sbjct: 227 QECTTAANFLAATDKGALRDFMNE------YFARYIAR-LTKMLPLVEERAKHVVSENLR 279
Query: 114 RLKEFQVEIERRLKEF 129
LK + + K+F
Sbjct: 280 VLKAVKAMKDNDFKQF 295
Score = 27.5 bits (61), Expect = 3.6
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 65 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 124
E + L++F E F I R L + +E R K E R
Sbjct: 227 QECTTAANFLAATDKGALRDFMNE------YFARYIAR-LTKMLPLVEERAKHVVSENLR 279
Query: 125 RLKEFQVEIERRLKEL 140
LK + + K+
Sbjct: 280 VLKAVKAMKDNDFKQF 295
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 27.5 bits (62), Expect = 2.0
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 61 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 120
K Q ++E+ K+ Q E+E+ KE Q E+ K+ E ++ + E++++++EFQ
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQ- 75
Query: 121 EIERRLKEFQVEIERRLKELRSSIFSR 147
R+ ++ Q ++++R +E I +
Sbjct: 76 ---RKQQKLQQDLQKRQQEELQKILDK 99
Score = 27.2 bits (61), Expect = 3.0
Identities = 22/92 (23%), Positives = 51/92 (55%)
Query: 50 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 109
K Q ++E+ K+ Q E+E+ KE Q E+ K+ E ++ + E++++++EFQ
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQR 76
Query: 110 EIERRLKEFQVEIERRLKEFQVEIERRLKELR 141
+ ++ ++ Q + L++ +I + +KE+
Sbjct: 77 KQQKLQQDLQKRQQEELQKILDKINKAIKEVA 108
Score = 26.8 bits (60), Expect = 3.2
Identities = 23/95 (24%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 17 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 76
K Q ++E+ K+ Q E+E+ KE Q E+ K+ E ++ + E++++++EFQ
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQ- 75
Query: 77 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI 111
R+ ++ Q ++++R +E +I ++ + E+
Sbjct: 76 ---RKQQKLQQDLQKRQQEELQKILDKINKAIKEV 107
Score = 26.8 bits (60), Expect = 3.2
Identities = 23/95 (24%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 28 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 87
K Q ++E+ K+ Q E+E+ KE Q E+ K+ E ++ + E++++++EFQ
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQ- 75
Query: 88 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI 122
R+ ++ Q ++++R +E +I ++ + E+
Sbjct: 76 ---RKQQKLQQDLQKRQQEELQKILDKINKAIKEV 107
Score = 26.8 bits (60), Expect = 3.2
Identities = 23/95 (24%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 39 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 98
K Q ++E+ K+ Q E+E+ KE Q E+ K+ E ++ + E++++++EFQ
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQ- 75
Query: 99 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI 133
R+ ++ Q ++++R +E +I ++ + E+
Sbjct: 76 ---RKQQKLQQDLQKRQQEELQKILDKINKAIKEV 107
Score = 26.0 bits (58), Expect = 7.3
Identities = 24/96 (25%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 5 GKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 64
GK Q ++E+ K+ Q E+E+ KE Q E+ K+ E ++ + E++++++EFQ
Sbjct: 16 GKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQ 75
Query: 65 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI 100
R+ ++ Q ++++R +E +I ++ + E+
Sbjct: 76 ----RKQQKLQQDLQKRQQEELQKILDKINKAIKEV 107
>gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit. This
family consist of exodeoxyribonuclease VII, large
subunit XseA which catalyses exonucleolytic cleavage in
either the 5'->3' or 3'->5' direction to yield
5'-phosphomononucleotides. Exonuclease VII consists of
one large subunit and four small subunits [DNA
metabolism, Degradation of DNA].
Length = 432
Score = 27.9 bits (62), Expect = 2.3
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
Q E+ +RL F V + R + + RL++ ++R+ + +L Q++ E
Sbjct: 257 QDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQ------HPQNKLALQQLQFE 310
Query: 69 RRLKEFQVEIERRLKEFQVEIERRLKEF-QVEIERRLKEFQVEIER 113
+ K Q + ++L+ + + R K Q ++ Q E+
Sbjct: 311 KLEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILRAQTRTEQ 356
>gnl|CDD|220232 pfam09421, FRQ, Frequency clock protein. The frequency clock
protein, is the central component of the frq-based
circadian negative feedback loop, regulates various
aspects of the circadian clock in Neurospora crassa.
This protein has been shown to interact with itself via
a coiled-coil.
Length = 989
Score = 28.0 bits (62), Expect = 2.4
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 10 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
VEI +RLKE E+ +R K+F ++ R+ K F++++ K + E+E L+EF +E
Sbjct: 142 VEI-QRLKE---EL-KRYKQFGSDMMRKEKLFEIKVHGLPKRKKRELEATLREFAASLE 195
Score = 28.0 bits (62), Expect = 2.4
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 21 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 79
VEI +RLKE E+ +R K+F ++ R+ K F++++ K + E+E L+EF +E
Sbjct: 142 VEI-QRLKE---EL-KRYKQFGSDMMRKEKLFEIKVHGLPKRKKRELEATLREFAASLE 195
Score = 28.0 bits (62), Expect = 2.4
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 32 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 90
VEI +RLKE E+ +R K+F ++ R+ K F++++ K + E+E L+EF +E
Sbjct: 142 VEI-QRLKE---EL-KRYKQFGSDMMRKEKLFEIKVHGLPKRKKRELEATLREFAASLE 195
Score = 28.0 bits (62), Expect = 2.4
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 43 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 101
VEI +RLKE E+ +R K+F ++ R+ K F++++ K + E+E L+EF +E
Sbjct: 142 VEI-QRLKE---EL-KRYKQFGSDMMRKEKLFEIKVHGLPKRKKRELEATLREFAASLE 195
Score = 28.0 bits (62), Expect = 2.4
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 54 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 112
VEI +RLKE E+ +R K+F ++ R+ K F++++ K + E+E L+EF +E
Sbjct: 142 VEI-QRLKE---EL-KRYKQFGSDMMRKEKLFEIKVHGLPKRKKRELEATLREFAASLE 195
Score = 28.0 bits (62), Expect = 2.4
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 65 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 123
VEI +RLKE E+ +R K+F ++ R+ K F++++ K + E+E L+EF +E
Sbjct: 142 VEI-QRLKE---EL-KRYKQFGSDMMRKEKLFEIKVHGLPKRKKRELEATLREFAASLE 195
Score = 28.0 bits (62), Expect = 2.4
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 76 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 134
VEI +RLKE E+ +R K+F ++ R+ K F++++ K + E+E L+EF +E
Sbjct: 142 VEI-QRLKE---EL-KRYKQFGSDMMRKEKLFEIKVHGLPKRKKRELEATLREFAASLE 195
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 27.9 bits (63), Expect = 2.5
Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
+ E+ +RL++ Q + R ++ + +RL ++ RRLK ER L + Q ++
Sbjct: 262 RAELLQRLQQLQQRLARAMRRRLEQKRQRLD----QLARRLK--FQSPERLLAQQQQRLD 315
Query: 69 RRLKEFQVEIERRLKEFQVEIER-RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK 127
R + Q +ERRL+ + +ER + Q +RR++ Q +E+ + + + R+LK
Sbjct: 316 RLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLK 375
Query: 128 EFQVEIERRLKELRS 142
+ +E ++L +
Sbjct: 376 RKRQRLEALAQQLEA 390
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 27.9 bits (62), Expect = 2.7
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 2/138 (1%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
QV + + E + E E + + + +L E +VE + K + E ++ + E E
Sbjct: 218 QVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAE 277
Query: 69 RRLKEFQVEIERRLKEFQVEIERRLKEF--QVEIERRLKEFQVEIERRLKEFQVEIERRL 126
+ + E E E + ++ + E++ E+ L E Q E E
Sbjct: 278 VAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEP 337
Query: 127 KEFQVEIERRLKELRSSI 144
+E I ++ +
Sbjct: 338 QERSYFINAAQRQAQEEA 355
Score = 26.7 bits (59), Expect = 6.0
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 2/135 (1%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF--QVE 66
+VE + K + E ++ + E E + + E E E + ++ + E
Sbjct: 251 EVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQE 310
Query: 67 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 126
++ E+ L E Q E E +E I ++ Q E + + +
Sbjct: 311 VQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAE 370
Query: 127 KEFQVEIERRLKELR 141
+ E E
Sbjct: 371 AAVETARETEEAERA 385
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 27.7 bits (61), Expect = 3.5
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 56 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 115
I ++ E ++ + L +F+ + RR + + + + LK+F E + L + ++ +
Sbjct: 330 ITGQMGEREMFAVQFLGDFKPK-PRRYEGDRTNVAK-LKKFIFEEVKSLVNTLINLKLAI 387
Query: 116 KEFQVEIERRLKEFQVEIERRLKELRSSIFSRHEKL 151
VEI +LK+ +LK L+ F +K+
Sbjct: 388 ANDFVEITEKLKKNNQNHVPKLKLLKGVQFDTKQKV 423
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 27.7 bits (62), Expect = 3.5
Identities = 24/130 (18%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEI---ERRLKEFQVEIERRLKEFQVEIERRLKEFQV 65
+ ++E + E + + E +L++ ++ + + F ++ +E + E + + +
Sbjct: 669 KDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEG 728
Query: 66 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 125
E++ +L + IE + + + RLKE + + +R L V+ E++R+
Sbjct: 729 ELDNQLAQLSAAIEAA----RTQAKARLKELKKQYDRELASLDVDPNT-----VKELKRQ 779
Query: 126 LKEFQVEIER 135
++E + IER
Sbjct: 780 IEELETTIER 789
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 27.3 bits (61), Expect = 4.0
Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
+ +I++ + + E +E ++E +KE + E L++ E+E
Sbjct: 44 ESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEIL-DLEAEIKEVE-ENLESLEKEINELE 101
Query: 69 RRLKEFQVEIE--RRLKEFQVEIERRLKEFQ-VEIERRLK-EFQVEIERRLK--EFQVEI 122
L E E E+ +F+ + LK F + R K F+ E+
Sbjct: 102 EWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFEREL 161
Query: 123 ERRLKEF--QVEIERRLKELRSSIF 145
R + + Q EIE L++ + ++F
Sbjct: 162 WRACRGYIRQAEIEEPLEDPKKTVF 186
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 27.2 bits (61), Expect = 4.4
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ-VEIER 69
E++RR+ + ++E E KE + RL++ + E+ +E+ E+ E ++ +
Sbjct: 409 ELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQ 468
Query: 70 RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ----VEIERRLKE 117
++KE EIE+ ++E R + + E Q E+E+RL+
Sbjct: 469 QIKE---EIEQ--VRLELEQAEREGDLA-----KAAELQYGKLPELEKRLQA 510
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 27.0 bits (59), Expect = 5.8
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 47 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV---EIERR 103
+ ++++ EI R LKE RRL+E+ ERRL + ++++ L+E+Q + E R
Sbjct: 363 TQAEKYEQEIAR-LKERLRVSVRRLEEY----ERRLLGQEQQMQKLLQEYQARLEDSEER 417
Query: 104 LKEFQVEIERRLK 116
L+ Q E + ++K
Sbjct: 418 LRRQQEEKDSQMK 430
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 26.8 bits (60), Expect = 6.1
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 12 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 71
+ R KE + R +Q ER L + ++ER K + E+++ + +E R L
Sbjct: 388 LVRLAKEREKPDAEREPGYQ---ERDLPRLEQQLERIDKPYDAEVDKAVLAAMLEEYREL 444
Score = 26.8 bits (60), Expect = 6.1
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 23 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 82
+ R KE + R +Q ER L + ++ER K + E+++ + +E R L
Sbjct: 388 LVRLAKEREKPDAEREPGYQ---ERDLPRLEQQLERIDKPYDAEVDKAVLAAMLEEYREL 444
Score = 26.8 bits (60), Expect = 6.1
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 34 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 93
+ R KE + R +Q ER L + ++ER K + E+++ + +E R L
Sbjct: 388 LVRLAKEREKPDAEREPGYQ---ERDLPRLEQQLERIDKPYDAEVDKAVLAAMLEEYREL 444
Score = 26.8 bits (60), Expect = 6.1
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 45 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 104
+ R KE + R +Q ER L + ++ER K + E+++ + +E R L
Sbjct: 388 LVRLAKEREKPDAEREPGYQ---ERDLPRLEQQLERIDKPYDAEVDKAVLAAMLEEYREL 444
Score = 26.8 bits (60), Expect = 6.1
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 56 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 115
+ R KE + R +Q ER L + ++ER K + E+++ + +E R L
Sbjct: 388 LVRLAKEREKPDAEREPGYQ---ERDLPRLEQQLERIDKPYDAEVDKAVLAAMLEEYREL 444
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 26.9 bits (60), Expect = 6.1
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 35 ERRLKEFQVEIERRLKEFQVEIER-RLKEFQVEIE--------RRLKEFQVEIERRLKEF 85
E +E + +ER+ + + E R K +++ E + E E E RL E
Sbjct: 673 ELLEQEARGRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEA 732
Query: 86 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIF 145
+ E+E E + + R E ++E R+ +E ++E E+ E ++ + L ++ ++ F
Sbjct: 733 EAEVE--QAELRAKALRIEAEAELEKLRKRQELELEYEQAQNELEIAKAKELADIEATKF 790
Query: 146 SRH-EKLGMQT 155
R E LG +T
Sbjct: 791 ERIVEALGRET 801
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 26.1 bits (58), Expect = 8.0
Identities = 28/137 (20%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
E ER +E + ++E+ +E E + ++E + + ++ + E + L + E
Sbjct: 32 IKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEAS 91
Query: 69 RRLKEFQVEIERRLKEFQVEIERRLKE-----FQVEIERRLKEFQVEIERRLKEFQVEIE 123
+++ Q++IER +E++ E+ER ++E ++ E+ +E E+ +++ IE
Sbjct: 92 SIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIE 151
Query: 124 RRLKEFQVEIERRLKEL 140
+ +K+ + +E +E+
Sbjct: 152 KLIKKREEILESSEEEI 168
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 25.9 bits (57), Expect = 8.1
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
E++++L E Q E+E + E+E L++ + +++ + + +E RL+ + I+
Sbjct: 81 LSELKQQLSELQEELEDLEERIA-ELESELEDLKEDLQLLRELLK-SLEERLESLEESIK 138
Query: 69 RRLKEFQVEIERRLKEFQVEIER--RLKEFQVEIERRLKEFQVEIER 113
KE + + +E + E RL+E ++ ++E Q +E+
Sbjct: 139 ELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQ 185
>gnl|CDD|217768 pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid
protein E is involved with the stabilisation of the
condensed form of the DNA molecule in phage heads.
Length = 328
Score = 26.1 bits (58), Expect = 8.7
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 91 RRLKEFQ---VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSR 147
R + F+ ++ + + ++ R E + E+ER + + R+L ELR SI +
Sbjct: 65 RETRTFEPPYIKPKDVITADDLQNLRAFGE-ETELERVQEV----VARKLAELRRSIDAT 119
Query: 148 HEKLGMQ 154
E +
Sbjct: 120 LEWMRAG 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.369
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,156,937
Number of extensions: 1043039
Number of successful extensions: 6473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4468
Number of HSP's successfully gapped: 1055
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)