RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3509
(157 letters)
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 45.0 bits (107), Expect = 2e-06
Identities = 16/152 (10%), Positives = 50/152 (32%), Gaps = 3/152 (1%)
Query: 1 MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 60
+++ + ++ + RL + + + EI+ + + + ++E++R+
Sbjct: 816 SELEAIYNSLQTKLRLIKREPFVAPAGLTPN-EIDSTWSALEKAEQEHAEALRIELKRQK 874
Query: 61 KEFQV--EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 118
K + + R LK+ + + + L+ F E + +
Sbjct: 875 KIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQS 934
Query: 119 QVEIERRLKEFQVEIERRLKELRSSIFSRHEK 150
++ L + + EL + +
Sbjct: 935 NSDLLSILAQLTELNYNGVPELTERKDTFFAQ 966
Score = 40.8 bits (96), Expect = 7e-05
Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 5/147 (3%)
Query: 10 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER 69
E+E Q ++ +E EI+ + + + ++E++R
Sbjct: 816 SELEAIYNSLQTKLRLIKRE---PFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKR 872
Query: 70 RLKEFQV--EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK 127
+ K + + R LK+ + + + L+ F E +
Sbjct: 873 QKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 932
Query: 128 EFQVEIERRLKELRSSIFSRHEKLGMQ 154
+ ++ L +L ++ +L +
Sbjct: 933 QSNSDLLSILAQLTELNYNGVPELTER 959
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 40.9 bits (96), Expect = 7e-05
Identities = 18/154 (11%), Positives = 59/154 (38%), Gaps = 1/154 (0%)
Query: 1 MKIKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 60
M+ Q + L + ++ R + + + R + V ++
Sbjct: 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897
Query: 61 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 120
+ + E + + + R K+ + +E ++ + Q +I+ + KE++ + ++ ++
Sbjct: 898 RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK-SLLEKMNNLEI 956
Query: 121 EIERRLKEFQVEIERRLKELRSSIFSRHEKLGMQ 154
++ + ++ER + + + L +Q
Sbjct: 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990
Score = 40.1 bits (94), Expect = 1e-04
Identities = 16/134 (11%), Positives = 51/134 (38%), Gaps = 1/134 (0%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 70
+ Q + L + ++ R + + + R + V ++
Sbjct: 837 CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896
Query: 71 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 130
+ + E + + + R K+ + +E ++ + Q +I+ + KE++ + ++ +
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK-SLLEKMNNLE 955
Query: 131 VEIERRLKELRSSI 144
+ ++LRS +
Sbjct: 956 ITYSTETEKLRSDV 969
Score = 38.2 bits (89), Expect = 6e-04
Identities = 19/137 (13%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 15 RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 74
R K+ + +E ++ + Q +I+ + KE++ + ++ ++ ++ + ++ER
Sbjct: 918 RYKKLHIGLENKIMQLQRKIDEQNKEYK-SLLEKMNNLEITYSTETEKLRSDVERLRMSE 976
Query: 75 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 134
+ + ++ E ++ + K+ E + K ++ LKE ++
Sbjct: 977 EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036
Query: 135 RRLKELRSSIFSRHEKL 151
+EL I + +++
Sbjct: 1037 TEKEELNRRIHDQAKEI 1053
Score = 32.4 bits (74), Expect = 0.057
Identities = 11/108 (10%), Positives = 38/108 (35%)
Query: 44 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 103
+ Q + L + ++ R + + + R + V ++
Sbjct: 837 CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896
Query: 104 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSRHEKL 151
+ + E + + + R K+ + +E ++ +L+ I ++++
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY 944
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 35.9 bits (82), Expect = 0.003
Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 9 QVEIERRLKEFQV--EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE---- 62
+EI +E E +R +E + +ER+ Q E E+ KE +
Sbjct: 661 AIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTG 720
Query: 63 -FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVE 121
+ E E R + ++E E + + +++ + E + E+ER K ++E+ + ++E
Sbjct: 721 NAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELE 780
Query: 122 IERRLKEFQVEIER 135
+ + + VE ++
Sbjct: 781 VSKAQQLANVEAKK 794
Score = 34.0 bits (77), Expect = 0.015
Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 7/138 (5%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQV--EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVE 66
+ +R + +EI +E E +R +E + +ER+ Q E E+ KE
Sbjct: 650 TRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLEL 709
Query: 67 IERRLKE-----FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVE 121
+ + E E R + ++E E + + +++ + E + E+ER K ++E
Sbjct: 710 EAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREME 769
Query: 122 IERRLKEFQVEIERRLKE 139
+ + ++E+ + +
Sbjct: 770 LIYARAQLELEVSKAQQL 787
Score = 32.5 bits (73), Expect = 0.054
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 3/136 (2%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV--- 65
+ +ER+ Q E E+ KE + + E + E R E V
Sbjct: 685 RGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQA 744
Query: 66 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 125
+++ + + E E + E+E Q+E+E + +E + + E
Sbjct: 745 KLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGP 804
Query: 126 LKEFQVEIERRLKELR 141
+ + +++
Sbjct: 805 GTIRDLAVAGPEMQVK 820
Score = 31.7 bits (71), Expect = 0.087
Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
Query: 14 RRLKEFQVEIERRLKEFQVEIERRLKEFQV--EIERRLKEFQVEIERRLKEFQVEIERRL 71
+ + + +R + +EI +E E +R +E + +ER+ Q E E+
Sbjct: 644 EPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKAR 703
Query: 72 KEFQVEIERRLKE-----FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL 126
KE + + E E R + ++E E + + +++ + E + E+ER
Sbjct: 704 KELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVK 763
Query: 127 KEFQVEIERRLKELRSSIFSRHE 149
K ++E+ +L + +
Sbjct: 764 KVREMELIYARAQLELEVSKAQQ 786
Score = 30.2 bits (67), Expect = 0.29
Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 7/136 (5%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV--EIERRLKEFQVEIE 68
+ + V+ + + + +R + +EI +E E +R +E + +E
Sbjct: 630 QNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLE 689
Query: 69 RRLKEFQVEIERRLKEFQVEIERRLKE-----FQVEIERRLKEFQVEIERRLKEFQVEIE 123
R+ Q E E+ KE + + E E R + ++E E + + +++ +
Sbjct: 690 RQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQ 749
Query: 124 RRLKEFQVEIERRLKE 139
E + E+ER K
Sbjct: 750 ALAIETEAELERVKKV 765
Score = 29.0 bits (64), Expect = 0.75
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 2/129 (1%)
Query: 13 ERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV--EIERR 70
+ R + + + V+ + + + +R + +EI +E E +R
Sbjct: 621 KARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRL 680
Query: 71 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 130
+E + +ER+ Q E E+ KE + + E + E R E
Sbjct: 681 EQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGS 740
Query: 131 VEIERRLKE 139
V + +
Sbjct: 741 VLQAKLKAQ 749
Score = 27.1 bits (59), Expect = 3.2
Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 2/125 (1%)
Query: 17 KEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 76
+ + + R + + + V+ + + + +R + +EI +E
Sbjct: 614 PDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAA 673
Query: 77 --EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 134
E +R +E + +ER+ Q E E+ KE + + E + E
Sbjct: 674 KHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAA 733
Query: 135 RRLKE 139
R E
Sbjct: 734 RIEGE 738
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 34.4 bits (79), Expect = 0.011
Identities = 27/142 (19%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 3 IKGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 62
++ F + ++ + E++ + +E Q ER+ K E K
Sbjct: 828 VRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKH 887
Query: 63 FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEI 122
Q+ E+ L + +++ E L E+ RL + E+E L E +E R++E + E
Sbjct: 888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE----MEARIEEEE-ER 942
Query: 123 ERRLKEFQVEIERRLKELRSSI 144
++L+ + ++++++ +L +
Sbjct: 943 SQQLQAEKKKMQQQMLDLEEQL 964
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.10
Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 21/154 (13%)
Query: 18 EFQV-EIERRLKE-FQVEIERRLKEFQV-EIERRLKEF--QVEIERRLKEFQVEIE-RRL 71
+F+ E + + K+ V + + F +++ K + EI+ + RL
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 72 KE-FQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIER------ 124
+ E +++F E+ R +F + +K Q + + + + +R
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMS---PIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 125 RLKEFQVEIERRLKELRSSIFS-RHEKL----GM 153
++ V + +LR ++ R K G+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Score = 25.6 bits (55), Expect = 9.1
Identities = 17/139 (12%), Positives = 44/139 (31%), Gaps = 25/139 (17%)
Query: 12 IERRLKEFQVEIER----RLKEFQVEIERRLKEFQVEIERRLKE----FQ--VEI-ERRL 60
I +++ + + IE L + R++ + F I L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 61 KEFQVEIERRLKEFQVEIERRLKEFQVE--IERRLKEFQVEIERRLKEFQVEIERRLKEF 118
++ + ++ + + +E++ KE + I E +V++E
Sbjct: 393 SLIWFDVIKS------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE---- 442
Query: 119 QVEIERRLKEFQVEIERRL 137
+ R + + I +
Sbjct: 443 -YALHRSIVD-HYNIPKTF 459
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.9 bits (61), Expect = 1.7
Identities = 18/100 (18%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 4 KGKHCQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 63
+ V+ + + +++E + E ++K+ ++E+E+ + E ++LK+
Sbjct: 297 AVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDS 356
Query: 64 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 103
+ E++RR ++ + +E + KE + E R+ ++ + E +
Sbjct: 357 EAELQRRHEQMKKNLEAQHKELE-EKRRQFEDEKANWEAQ 395
Score = 27.5 bits (60), Expect = 2.2
Identities = 18/100 (18%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 26 RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 85
+ V+ + + +++E + E ++K+ ++E+E+ + E ++LK+
Sbjct: 297 AVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDS 356
Query: 86 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 125
+ E++RR ++ + +E + KE + E R+ ++ + E +
Sbjct: 357 EAELQRRHEQMKKNLEAQHKELE-EKRRQFEDEKANWEAQ 395
Score = 26.3 bits (57), Expect = 4.9
Identities = 16/84 (19%), Positives = 43/84 (51%)
Query: 59 RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 118
+ V+ + + +++E + E ++K+ ++E+E+ + E ++LK+
Sbjct: 297 AVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDS 356
Query: 119 QVEIERRLKEFQVEIERRLKELRS 142
+ E++RR ++ + +E + KEL
Sbjct: 357 EAELQRRHEQMKKNLEAQHKELEE 380
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 18 EFQVEIERR--LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 62
+FQ+ + R + + +E R + + E++ R+K
Sbjct: 363 QFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 29 EFQVEIERR--LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 73
+FQ+ + R + + +E R + + E++ R+K
Sbjct: 363 QFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 40 EFQVEIERR--LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 84
+FQ+ + R + + +E R + + E++ R+K
Sbjct: 363 QFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 51 EFQVEIERR--LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 95
+FQ+ + R + + +E R + + E++ R+K
Sbjct: 363 QFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 62 EFQVEIERR--LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 106
+FQ+ + R + + +E R + + E++ R+K
Sbjct: 363 QFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 73 EFQVEIERR--LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 117
+FQ+ + R + + +E R + + E++ R+K
Sbjct: 363 QFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 84 EFQVEIERR--LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 128
+FQ+ + R + + +E R + + E++ R+K
Sbjct: 363 QFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 95 EFQVEIERR--LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKE 139
+FQ+ + R + + +E R + + E++ R+K
Sbjct: 363 QFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKT 409
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 26.9 bits (60), Expect = 3.7
Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 11/105 (10%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE-RRLKEFQVEI 67
Q++ EF L F+ + ++ ++ + IE + F +
Sbjct: 1 QIDYRDVFIEF-------LTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENL 53
Query: 68 ERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 112
+ I L + + + + +R +++ V I
Sbjct: 54 AYEIINNTKII---LPILEGALYDHILQLDPTYQRDIEKVHVRIV 95
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A
{Homo sapiens}
Length = 273
Score = 26.6 bits (58), Expect = 3.8
Identities = 23/141 (16%), Positives = 67/141 (47%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 70
E++ RL + E + ++ + E+ R L + + + +L + ++K+ E++ R
Sbjct: 114 ELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKAR 173
Query: 71 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQ 130
+ E+ +RL ++ L+ +++ L E ++++++EF+ +E + F
Sbjct: 174 ISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFN 233
Query: 131 VEIERRLKELRSSIFSRHEKL 151
+ +++++LR + +
Sbjct: 234 KALVQQMEQLRQKLGPHAGDV 254
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 4.4
Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 6/19 (31%)
Query: 134 ERR-LKELRSSIFSRHEKL 151
E++ LK+L++S+ KL
Sbjct: 18 EKQALKKLQASL-----KL 31
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high
density lipop (HDL), lipid binding, plasma, lipid
transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Length = 185
Score = 26.2 bits (57), Expect = 4.6
Identities = 17/112 (15%), Positives = 53/112 (47%)
Query: 40 EFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVE 99
++ +L + + + + ++ +EF +E+ + + E+ + L+E + +
Sbjct: 38 ALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAK 97
Query: 100 IERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSRHEKL 151
++ L +FQ + + ++ ++ ++E E Q ++L EL+ + E++
Sbjct: 98 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEM 149
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.6 bits (58), Expect = 4.7
Identities = 15/108 (13%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
++ + + E L++ + E+ + F ++ + E + E E+ L E ++
Sbjct: 317 PFSLQETYEAKRNEFLGELQKKEEEMRQM---FVQRVKEKEAELK-EAEKELHEKFDRLK 372
Query: 69 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK 116
+ ++ + ++E + K E+ + + + Q + LK
Sbjct: 373 KLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLK 420
Score = 26.6 bits (58), Expect = 4.7
Identities = 15/108 (13%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 31 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 90
++ + + E L++ + E+ + F ++ + E + E E+ L E ++
Sbjct: 317 PFSLQETYEAKRNEFLGELQKKEEEMRQM---FVQRVKEKEAELK-EAEKELHEKFDRLK 372
Query: 91 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK 138
+ ++ + ++E + K E+ + + + Q + LK
Sbjct: 373 KLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLK 420
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase,
hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4
NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A*
2c6n_A* 2c6f_A*
Length = 629
Score = 26.3 bits (57), Expect = 5.8
Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 5/119 (4%)
Query: 13 ERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK 72
E + F + ++ + I Q E +EF ++ K
Sbjct: 14 EAGAQLFAQSYQSSAEQVLFQSVAASWAHDTNITAENARRQEEAALLSQEFAEAWGQKAK 73
Query: 73 EFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 131
E I ++ + ++ R + + L ++ ++ R +V
Sbjct: 74 ELYEPIWQQFTD--PQLRRIIGAVRTLGSANLPL---AKRQQYNALLSQMSRIYSTAKV 127
Score = 26.0 bits (56), Expect = 6.3
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 68 ERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLK 127
E + F + ++ + I Q E +EF ++ K
Sbjct: 14 EAGAQLFAQSYQSSAEQVLFQSVAASWAHDTNITAENARRQEEAALLSQEFAEAWGQKAK 73
Query: 128 EFQV---------EIERRLKELRSS 143
E ++ R + +R+
Sbjct: 74 ELYEPIWQQFTDPQLRRIIGAVRTL 98
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma,
lipid binding protein; 1.7A {Homo sapiens} SCOP:
a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Length = 165
Score = 25.5 bits (55), Expect = 6.6
Identities = 14/101 (13%), Positives = 45/101 (44%)
Query: 44 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERR 103
E+ + E E++ E + ++ +E + + + L+ Q + +++ + + +
Sbjct: 59 ELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQY 118
Query: 104 LKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSI 144
E Q + + +E +V + L++ + + R +L+ +
Sbjct: 119 RGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I
methyltransferase, DNA binding, DNA BIND protein; 1.95A
{Thermoanaerobacter tengcongensis}
Length = 412
Score = 25.8 bits (57), Expect = 7.4
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 108 QVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSR 147
Q I L + Q ++ LK Q E E LK L +I +
Sbjct: 368 QRRIVAYLDQIQQQVAA-LKRAQAETEAELKRLEQAILDK 406
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 25.8 bits (57), Expect = 8.4
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 48 RLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEF 107
R ++F E R K ++I LK+ L E V E L +
Sbjct: 448 RWRKFSREWIRTAKSDSLDISW-LKDKDSIDADSLPEPDVLAA--------EAMGELVQA 498
Query: 108 QVEIERRLKEFQVEIERRLKEFQVEIER--RLKELRSSIFSRH 148
E++ ++E E L+ +E +E S H
Sbjct: 499 LSELDALMRELGASDEADLQRQLLEEAFGGVKEEGGSHHHHHH 541
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.369
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,781,631
Number of extensions: 203100
Number of successful extensions: 1825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1394
Number of HSP's successfully gapped: 480
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)