RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3509
(157 letters)
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 31.3 bits (71), Expect = 0.024
Identities = 17/111 (15%), Positives = 49/111 (44%)
Query: 31 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 90
QV+ E + E+ + E E++ E + ++ +E + + + L+ Q +
Sbjct: 25 QVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLG 84
Query: 91 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELR 141
+++ + + + E Q + + +E +V + L++ + + R +L+
Sbjct: 85 ADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQ 135
Score = 31.3 bits (71), Expect = 0.026
Identities = 17/115 (14%), Positives = 49/115 (42%)
Query: 9 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 68
QV+ E + E+ + E E++ E + ++ +E + + + L+ Q +
Sbjct: 25 QVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLG 84
Query: 69 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 123
+++ + + + E Q + + +E +V + L++ + + R + Q +
Sbjct: 85 ADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 139
Score = 31.3 bits (71), Expect = 0.026
Identities = 17/115 (14%), Positives = 49/115 (42%)
Query: 20 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 79
QV+ E + E+ + E E++ E + ++ +E + + + L+ Q +
Sbjct: 25 QVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLG 84
Query: 80 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 134
+++ + + + E Q + + +E +V + L++ + + R + Q +
Sbjct: 85 ADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 139
Score = 27.9 bits (62), Expect = 0.41
Identities = 18/110 (16%), Positives = 48/110 (43%)
Query: 42 QVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIE 101
QV+ E + E+ + E E++ E + ++ +E + + + L+ Q +
Sbjct: 25 QVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLG 84
Query: 102 RRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKELRSSIFSRHEKL 151
+++ + + + E Q + + +E +V + L++LR + + L
Sbjct: 85 ADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDL 134
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 120
Score = 26.0 bits (57), Expect = 1.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 10 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 54
V+ L+ F E+ R+++ + E + + V I + K ++V
Sbjct: 21 VDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEV 65
Score = 26.0 bits (57), Expect = 1.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 21 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 65
V+ L+ F E+ R+++ + E + + V I + K ++V
Sbjct: 21 VDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEV 65
Score = 26.0 bits (57), Expect = 1.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 32 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 76
V+ L+ F E+ R+++ + E + + V I + K ++V
Sbjct: 21 VDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEV 65
Score = 26.0 bits (57), Expect = 1.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 43 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 87
V+ L+ F E+ R+++ + E + + V I + K ++V
Sbjct: 21 VDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEV 65
Score = 26.0 bits (57), Expect = 1.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 54 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 98
V+ L+ F E+ R+++ + E + + V I + K ++V
Sbjct: 21 VDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEV 65
Score = 26.0 bits (57), Expect = 1.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 65 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 109
V+ L+ F E+ R+++ + E + + V I + K ++V
Sbjct: 21 VDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEV 65
Score = 26.0 bits (57), Expect = 1.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 76 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 120
V+ L+ F E+ R+++ + E + + V I + K ++V
Sbjct: 21 VDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEV 65
Score = 26.0 bits (57), Expect = 1.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 87 VEIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRLKEFQV 131
V+ L+ F E+ R+++ + E + + V I + K ++V
Sbjct: 21 VDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEV 65
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Length = 447
Score = 25.3 bits (55), Expect = 4.3
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 77 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL----KEFQVEIERRLKEFQVE 132
+ RL + + + + ++EF + + R + F + +R + E
Sbjct: 315 RYDPRLAA---QGKNPFQLDSKAPDGSVEEF-LMAQNRFAVLDRSFPEDAKRLRAQVAHE 370
Query: 133 IERRLKELR 141
++ R KEL
Sbjct: 371 LDVRFKELE 379
Score = 24.9 bits (54), Expect = 5.9
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 11 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL----KEFQVEIERRLKEFQVE 66
+ RL + + + + ++EF + + R + F + +R + E
Sbjct: 315 RYDPRLAA---QGKNPFQLDSKAPDGSVEEF-LMAQNRFAVLDRSFPEDAKRLRAQVAHE 370
Query: 67 IERRLKEFQ 75
++ R KE +
Sbjct: 371 LDVRFKELE 379
Score = 24.9 bits (54), Expect = 5.9
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 22 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL----KEFQVEIERRLKEFQVE 77
+ RL + + + + ++EF + + R + F + +R + E
Sbjct: 315 RYDPRLAA---QGKNPFQLDSKAPDGSVEEF-LMAQNRFAVLDRSFPEDAKRLRAQVAHE 370
Query: 78 IERRLKEFQ 86
++ R KE +
Sbjct: 371 LDVRFKELE 379
Score = 24.9 bits (54), Expect = 5.9
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 33 EIERRLKEFQVEIERRLKEFQVEIERRLKEFQVEIERRL----KEFQVEIERRLKEFQVE 88
+ RL + + + + ++EF + + R + F + +R + E
Sbjct: 315 RYDPRLAA---QGKNPFQLDSKAPDGSVEEF-LMAQNRFAVLDRSFPEDAKRLRAQVAHE 370
Query: 89 IERRLKEFQ 97
++ R KE +
Sbjct: 371 LDVRFKELE 379
>d1ka8a_ a.4.5.20 (A:) P4 origin-binding domain {Bacteriophage P4
[TaxId: 10680]}
Length = 100
Score = 24.4 bits (53), Expect = 4.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 126 LKEFQVEIERRLKELRSSIFSRHEKLGMQT 155
LK F + + LKE + RH K G+QT
Sbjct: 56 LKMFGLGLPVMLKEYGLNYEKRHTKQGIQT 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.369
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 698,875
Number of extensions: 44729
Number of successful extensions: 610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 158
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.9 bits)