BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy351
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTR 87
GIA+ +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 28 GIAI-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 85
Query: 88 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145
P N+ L+G+ + PVVQ +P+ I + +V +N+ ++ EE+
Sbjct: 86 NPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEI 143
>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
Mutant With Cys 17 Replaced By Lys
Length = 386
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + KV + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSKVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant
Length = 381
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ + L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAMRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a
(Hsp70-1) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 409
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 23 FEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 82
F+ A + +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 20 FQSMAKAAAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAK 78
Query: 83 IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
P N+ L+G+ PVVQ +P+
Sbjct: 79 NQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPF 114
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 382
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
A + +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P
Sbjct: 5 AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 63
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ PVVQ +P+
Sbjct: 64 QNTVFDAKRLIGRKFGDPVVQSDXKHWPF 92
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLGS + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGSTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 382
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
A + +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P
Sbjct: 5 AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 63
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ PVVQ +P+
Sbjct: 64 QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 92
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1
Length = 380
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
A + +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P
Sbjct: 3 AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 61
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ PVVQ +P+
Sbjct: 62 QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 90
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
Complex With Amp-Pnp
Length = 391
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
A + +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P
Sbjct: 8 AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 66
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ PVVQ +P+
Sbjct: 67 QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 95
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The
Apo Form
Length = 391
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
A + +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P
Sbjct: 8 AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 66
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ PVVQ +P+
Sbjct: 67 QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 95
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3A8Y|B Chain B, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3ATU|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp- And Mg
Ion-Bound State
pdb|3ATV|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-Bound And
Mg Ion-Free State
pdb|3AY9|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-, Mg Ion-,
And K Ion- Bound State
Length = 392
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
A + +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P
Sbjct: 9 AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 67
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ PVVQ +P+
Sbjct: 68 QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 96
>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant
Length = 381
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAARLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain
Length = 382
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
A + +DLG+ + + + G +EI N + R TP+ VAF ER G+ A+ P
Sbjct: 5 AAIGIDLGTTYSCIGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 63
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ PVVQ +P+
Sbjct: 64 QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 92
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
+ +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 3 AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 91 NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G++ D VVQ +P+
Sbjct: 62 NTVFDAKRLIGRAFDDAVVQSDMKHWPF 89
>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
pdb|2QWO|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 394
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|2QW9|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QWL|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWL|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWM|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
pdb|2QWM|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
Length = 394
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|3CQX|A Chain A, Chaperone Complex
pdb|3CQX|B Chain B, Chaperone Complex
Length = 386
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 7 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 64
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 65 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 105
>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular
Chaperone Hsc70. Ii. Potassium Binds Specifically In The
Atpase Active Site
pdb|1NGI|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|1NGJ|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|3HSC|A Chain A, Three-Dimensional Structure Of The Atpase Fragment Of A
70k Heat-Shock Cognate Protein
Length = 386
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
1nge 3
Length = 386
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
+ +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 3 AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 91 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
N+ L+G+ D VVQ +P+ +V D R
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 97
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 554
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|A Chain A, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 381
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
+ +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 6 AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 64
Query: 91 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
N+ L+G+ D VVQ +P+ +V D R
Sbjct: 65 NTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
MUTANT
Length = 554
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant
Length = 381
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAERLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
+ +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 25 AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 83
Query: 91 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
N+ L+G+ D VVQ +P+ +V D R
Sbjct: 84 NTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 119
>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
pdb|2V7Z|B Chain B, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
Length = 543
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV +DLG + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGGTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
+ +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 3 AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 91 NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ D VVQ +P+
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPF 89
>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3KVG|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3L4I|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L4I|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L6Q|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
pdb|3L6Q|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
Length = 400
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTR 87
G + +DLG+ + V + ++I N + R TP+ VAF + ER G+ A+ R
Sbjct: 18 GGPAIGIDLGTTYSCVGVWRNDT-VDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVAR 76
Query: 88 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI-VFKTNDNELYHVEEL 145
P N+ L+G+ D VQ + +P+ + +++ I V + + +H EE+
Sbjct: 77 NPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEI 135
>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV ++LG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GINLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
S G AV + LG+ + V + G +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GISLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
P+N+ L+G+ D VVQ +P+ +V D R
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
pdb|3IUC|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
Length = 408
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFP 89
V+ +DLG+ + V + G +EI N + R TP+ VAF +GER G+ A+ T P
Sbjct: 28 VVGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNP 86
Query: 90 SNSYGYFLDLLGKSIDSPVVQ 110
N+ L+G++ + P VQ
Sbjct: 87 ENTVFDAKRLIGRTWNDPSVQ 107
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDL|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDN|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDN|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDO|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDO|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDP|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
pdb|3LDP|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
Length = 384
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFP 89
V+ +DLG+ + V + G +EI N + R TP+ VAF +GER G+ A+ T P
Sbjct: 7 VVGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNP 65
Query: 90 SNSYGYFLDLLGKSIDSPVVQ 110
N+ L+G++ + P VQ
Sbjct: 66 ENTVFDAKRLIGRTWNDPSVQ 86
>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2)
From Homo Sapiens At 1.80 A Resolution
Length = 387
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
+ +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 7 AIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAXNPT 65
Query: 91 NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ + VQ +P+
Sbjct: 66 NTIFDAKRLIGRKFEDATVQSDXKHWPF 93
>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
pdb|4GNI|B Chain B, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
Length = 409
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 53 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLG---KSID 105
E+ N++ R+ PT++++ G+ +G+ A+ R P N+ YF D+LG KS+D
Sbjct: 36 EVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVD 91
>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN
pdb|3QML|A Chain A, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|B Chain B, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 390
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 25 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 84
+YG V+ +DLG+ + VA++ G EI N++ R TP+ VAF ER G+ A+
Sbjct: 11 ENYG-TVIGIDLGTTYSCVAVMKNG-KTEILANEQGNRITPSYVAFTDDERLIGDAAKNQ 68
Query: 85 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
P N+ L+G + VQ P+
Sbjct: 69 VAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPF 102
>pdb|3QFU|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXED WITH
ADP
Length = 394
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 25 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 84
+YG V+ +DLG+ + VA++ G EI N++ R TP+ VAF ER G+ A+
Sbjct: 15 ENYG-TVIGIDLGTTYSCVAVMKNG-KTEILANEQGNRITPSYVAFTDDERLIGDAAKNQ 72
Query: 85 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
P N+ L+G + VQ P+
Sbjct: 73 VAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPF 106
>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2
(Hsp70-2) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 404
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
+ +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 25 AIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 83
Query: 91 NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ + VQ +P+
Sbjct: 84 NTIFDAKRLIGRKFEDATVQSDMKHWPF 111
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
+ +DLG+ + VA V EI N++ R TP+ VAF ER G+ A+ P
Sbjct: 12 AIGIDLGTTYSCVATYESSV--EIIANEQGNRVTPSFVAFTPEERLIGDAAKNQAALNPR 69
Query: 91 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 124
N+ L+G+ D VQ +P+ I D
Sbjct: 70 NTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVD 103
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFP 89
++ +DLG+ VAI+ P + N E R TP+++A+ GE G+ A+ P
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 124
N+ L+G+ VQ S P+ I AD
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAAD 97
>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|B Chain B, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 403
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
+ +DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P
Sbjct: 26 AVGIDLGTTYSCVGVFQQG-RVEILANDQGNRTTPSYVAFTDTERLVGDAAKSQAALNPH 84
Query: 91 NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
N+ L+G+ VQ +P+
Sbjct: 85 NTVFDAKRLIGRKFADTTVQSDMKHWPF 112
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 39.7 bits (91), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFP 89
++ +DLG+ VAI+ P + N E R TP+++A+ GE G+ A+ P
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 124
N+ L+G+ VQ S P+ I AD
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAAD 97
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 82
++ +DLG+ VA++ G +++ N E R TP++VAF GER GE A+
Sbjct: 4 IIGIDLGTTNSCVAVLEGG-EVKVIPNPEGNRTTPSVVAFKNGERLVGEVAK 54
>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|B Chain B, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|C Chain C, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|D Chain D, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
Length = 605
Score = 35.0 bits (79), Expect = 0.016, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFP 89
++ +DLG+ VAI P + N E R TP+++A+ G G+ A+ P
Sbjct: 4 IIGIDLGTTNSCVAIXDGTTP-RVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNP 62
Query: 90 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 124
N+ L+G+ VQ S P+ I AD
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIXPFKIIAAD 97
>pdb|3CK7|A Chain A, B. Thetaiotaomicron Susd With Alpha-Cyclodextrin
pdb|3CK7|B Chain B, B. Thetaiotaomicron Susd With Alpha-Cyclodextrin
pdb|3CK7|C Chain C, B. Thetaiotaomicron Susd With Alpha-Cyclodextrin
pdb|3CK7|D Chain D, B. Thetaiotaomicron Susd With Alpha-Cyclodextrin
pdb|3CK8|A Chain A, B. Thetaiotaomicron Susd With Beta-Cyclodextrin
pdb|3CK8|B Chain B, B. Thetaiotaomicron Susd With Beta-Cyclodextrin
pdb|3CKB|A Chain A, B. Thetaiotaomicron Susd With Maltotriose
pdb|3CKB|B Chain B, B. Thetaiotaomicron Susd With Maltotriose
pdb|3CK9|A Chain A, B. Thetaiotaomicron Susd With Maltoheptaose
pdb|3CK9|B Chain B, B. Thetaiotaomicron Susd With Maltoheptaose
Length = 527
Score = 29.6 bits (65), Expect = 0.56, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 93 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVE 143
Y YFLDL GK +P + F + P E++GT ++ NEL +E
Sbjct: 139 YWYFLDLFGK---APFKEHFSNDLPV------EKKGTELYTYIQNELNEIE 180
>pdb|3CKC|A Chain A, B. Thetaiotaomicron Susd
pdb|3CKC|B Chain B, B. Thetaiotaomicron Susd
Length = 527
Score = 29.6 bits (65), Expect = 0.58, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 93 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVE 143
Y YFLDL GK +P + F + P E++GT ++ NEL +E
Sbjct: 139 YWYFLDLFGK---APFKEHFSNDLPV------EKKGTELYTYIQNELNEIE 180
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 34 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 93
+DLG+ V V+ ++I +N+ S R TP++V F R GE + T N+
Sbjct: 7 LDLGNN-NSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 65
Query: 94 GYFLDLLG 101
++G
Sbjct: 66 ANLKRIIG 73
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 34 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 93
+DLG+ V V+ ++I +N+ S R TP++V F R GE + T N+
Sbjct: 7 LDLGNN-NSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 65
Query: 94 GYFLDLLG 101
++G
Sbjct: 66 ANLKRIIG 73
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 34 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 93
+DLG+ V V+ ++I +N+ S R TP++V F R GE + T N+
Sbjct: 6 LDLGNN-NSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 64
Query: 94 GYFLDLLG 101
++G
Sbjct: 65 ANLKRIIG 72
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 668
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 34 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 93
+DLG+ V V+ ++I +N+ S R TP++V F R GE + T N+
Sbjct: 9 LDLGNN-NSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 67
Query: 94 GYFLDLLG 101
++G
Sbjct: 68 ANLKRIIG 75
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 89 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYD 120
P NS F+ + + +D+PVVQ +S F Y D
Sbjct: 514 PHNSAYQFMRVPSRILDAPVVQFKESTFEYKD 545
>pdb|1H4E|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER 75
++VM + G ++ +P +P ++A +RK +V H GER
Sbjct: 84 LSVMQQEAGEWFLFCPCNTPYIPPDLAARLNHQRKDAPVVWVHDGER 130
>pdb|1HJL|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER 75
++VM + G ++ +P +P ++A +RK +V H GER
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGER 130
>pdb|1HJJ|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER 75
++VM + G ++ +P +P ++A +RK +V H GER
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGER 130
>pdb|1H4D|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER 75
++VM + G ++ +P +P ++A +RK +V H GER
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGER 130
>pdb|1FR9|A Chain A, Structure Of E. Coli Moba
pdb|1FRW|A Chain A, Structure Of E. Coli Moba With Bound Gtp And Manganese
Length = 194
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER 75
++VM + G ++ +P +P ++A +RK +V H GER
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGER 130
>pdb|1E5K|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein Moba (Protein Fa) From Escherichia Coli At Near
Atomic Resolution
Length = 201
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER 75
++VM + G ++ +P +P ++A +RK +V H GER
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGER 130
>pdb|1H4C|A Chain A, Biochemical And Structural Analysis Of The Molybdenum
Cofactor Biosynthesis Protein Moba
Length = 201
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER 75
++VM + G ++ +P +P ++A +RK +V H GER
Sbjct: 84 LSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKDAPVVWVHDGER 130
>pdb|1SUU|A Chain A, Structure Of Dna Gyrase A C-Terminal Domain
Length = 312
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 114 SRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
+RF D A + RG IV K ND + E+V
Sbjct: 127 ARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIV 159
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 84
G+ +DL S W P+++ ES +KT V H+ RT G A+++
Sbjct: 243 GVDAEVIDLRSLW----------PLDLDTIVESVKKTGRCVVVHEATRTCGFGAELV 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,075,577
Number of Sequences: 62578
Number of extensions: 160116
Number of successful extensions: 385
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 74
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)