Query psy351
Match_columns 146
No_of_seqs 150 out of 1208
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:29:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 9.9E-32 2.1E-36 222.7 10.8 116 28-145 35-152 (663)
2 PTZ00009 heat shock 70 kDa pro 99.9 1.6E-24 3.5E-29 191.0 11.2 118 28-146 3-121 (653)
3 PTZ00400 DnaK-type molecular c 99.9 5.2E-24 1.1E-28 188.1 12.8 115 28-146 40-155 (663)
4 PTZ00186 heat shock 70 kDa pre 99.9 3.3E-24 7.2E-29 189.1 10.1 115 28-145 26-140 (657)
5 KOG0102|consensus 99.9 2.7E-24 5.8E-29 182.7 9.0 116 26-145 24-140 (640)
6 PRK13410 molecular chaperone D 99.9 6.1E-23 1.3E-27 181.5 10.4 113 29-146 2-116 (668)
7 PRK00290 dnaK molecular chaper 99.9 6.6E-23 1.4E-27 180.0 9.5 111 30-146 3-114 (627)
8 PRK13411 molecular chaperone D 99.9 1.3E-22 2.8E-27 179.0 10.4 110 30-145 3-113 (653)
9 PLN03184 chloroplast Hsp70; Pr 99.9 1.1E-22 2.5E-27 179.9 9.8 115 27-146 37-153 (673)
10 PF00012 HSP70: Hsp70 protein; 99.9 1.7E-22 3.8E-27 175.1 9.5 113 31-146 1-116 (602)
11 TIGR02350 prok_dnaK chaperone 99.9 2.8E-22 6.1E-27 174.9 8.8 110 30-146 1-111 (595)
12 CHL00094 dnaK heat shock prote 99.9 5.3E-22 1.2E-26 174.2 10.0 113 29-146 2-116 (621)
13 KOG0101|consensus 99.9 6E-22 1.3E-26 171.9 9.8 118 27-145 5-123 (620)
14 KOG0103|consensus 99.9 1.3E-22 2.8E-27 176.0 4.2 117 29-146 1-118 (727)
15 TIGR01991 HscA Fe-S protein as 99.9 7.5E-22 1.6E-26 172.7 8.6 108 31-145 1-109 (599)
16 PRK05183 hscA chaperone protei 99.9 1.3E-21 2.8E-26 171.8 9.6 111 29-145 19-129 (616)
17 KOG0104|consensus 99.9 1.1E-21 2.4E-26 171.4 7.5 133 14-146 7-139 (902)
18 COG0443 DnaK Molecular chapero 99.7 7.5E-18 1.6E-22 147.1 9.0 76 28-103 4-80 (579)
19 PRK01433 hscA chaperone protei 99.7 9E-18 1.9E-22 147.1 7.7 102 30-145 20-121 (595)
20 PRK11678 putative chaperone; P 99.6 2E-15 4.3E-20 128.6 7.2 73 30-103 1-116 (450)
21 PRK13929 rod-share determining 98.5 2.6E-07 5.6E-12 75.9 6.4 56 30-95 5-63 (335)
22 TIGR00904 mreB cell shape dete 98.3 1.9E-06 4.1E-11 70.5 5.9 52 31-92 4-62 (333)
23 PRK13928 rod shape-determining 98.2 4.1E-06 9E-11 68.6 6.0 53 31-93 5-60 (336)
24 COG1077 MreB Actin-like ATPase 98.1 5.9E-06 1.3E-10 67.8 5.8 54 29-92 6-64 (342)
25 PF06723 MreB_Mbl: MreB/Mbl pr 98.1 3.8E-06 8.3E-11 69.2 3.9 53 30-92 2-57 (326)
26 PRK13930 rod shape-determining 97.9 3.1E-05 6.7E-10 63.0 6.1 52 31-92 10-64 (335)
27 PRK13927 rod shape-determining 97.8 6.1E-05 1.3E-09 61.4 6.2 53 30-92 6-61 (334)
28 PF00370 FGGY_N: FGGY family o 92.1 0.2 4.3E-06 38.9 3.8 20 30-49 1-20 (245)
29 smart00732 YqgFc Likely ribonu 90.5 0.32 7E-06 32.2 3.0 20 30-49 2-21 (99)
30 PRK10331 L-fuculokinase; Provi 88.7 0.51 1.1E-05 40.4 3.6 21 29-49 2-22 (470)
31 COG1070 XylB Sugar (pentulose 88.5 0.68 1.5E-05 40.2 4.3 22 28-49 3-24 (502)
32 PRK10939 autoinducer-2 (AI-2) 86.8 0.78 1.7E-05 39.8 3.7 20 30-49 4-23 (520)
33 TIGR02628 fuculo_kin_coli L-fu 86.7 0.75 1.6E-05 39.4 3.5 20 30-49 2-21 (465)
34 PRK15027 xylulokinase; Provisi 86.6 0.72 1.6E-05 39.7 3.4 19 31-49 2-20 (484)
35 PF03652 UPF0081: Uncharacteri 86.6 1.5 3.2E-05 31.7 4.5 21 29-49 1-21 (135)
36 TIGR01315 5C_CHO_kinase FGGY-f 85.8 0.87 1.9E-05 39.8 3.5 20 30-49 1-20 (541)
37 TIGR00241 CoA_E_activ CoA-subs 85.6 0.79 1.7E-05 35.9 2.9 19 31-49 2-20 (248)
38 smart00268 ACTIN Actin. ACTIN 85.5 1.5 3.3E-05 36.1 4.6 46 30-84 2-56 (373)
39 TIGR01314 gntK_FGGY gluconate 85.0 0.98 2.1E-05 39.0 3.4 19 31-49 2-20 (505)
40 PTZ00294 glycerol kinase-like 85.0 1 2.2E-05 39.0 3.4 20 30-49 3-22 (504)
41 TIGR01311 glycerol_kin glycero 85.0 1.5 3.2E-05 37.8 4.5 20 30-49 2-21 (493)
42 PRK00047 glpK glycerol kinase; 84.9 1.1 2.3E-05 38.7 3.6 21 29-49 5-25 (498)
43 TIGR03192 benz_CoA_bzdQ benzoy 84.5 1 2.2E-05 36.9 3.1 22 28-49 31-52 (293)
44 PLN00130 succinate dehydrogena 84.2 0.17 3.6E-06 38.7 -1.5 32 18-49 46-77 (213)
45 TIGR01234 L-ribulokinase L-rib 84.2 1.3 2.8E-05 38.7 3.8 18 30-47 2-19 (536)
46 PLN02295 glycerol kinase 83.6 1.2 2.6E-05 38.6 3.4 19 31-49 2-20 (512)
47 PRK04123 ribulokinase; Provisi 82.7 1.3 2.9E-05 38.6 3.3 20 29-48 3-22 (548)
48 cd00012 ACTIN Actin; An ubiqui 82.0 2.1 4.5E-05 35.3 4.1 46 31-85 1-56 (371)
49 PF14450 FtsA: Cell division p 81.8 2 4.2E-05 30.0 3.3 19 31-49 1-19 (120)
50 PRK13321 pantothenate kinase; 80.7 1.9 4.2E-05 34.0 3.3 20 30-49 1-20 (256)
51 PRK13318 pantothenate kinase; 79.6 2.3 4.9E-05 33.6 3.4 19 31-49 2-20 (258)
52 TIGR02261 benz_CoA_red_D benzo 79.6 3 6.6E-05 33.6 4.1 19 30-48 2-20 (262)
53 PLN02669 xylulokinase 79.5 2.4 5.2E-05 37.4 3.8 23 27-49 6-28 (556)
54 PTZ00280 Actin-related protein 79.2 4.2 9.2E-05 34.3 5.1 22 28-49 3-24 (414)
55 PRK13317 pantothenate kinase; 76.7 3 6.4E-05 33.7 3.3 21 29-49 2-22 (277)
56 PF00349 Hexokinase_1: Hexokin 75.2 2.9 6.3E-05 32.3 2.8 20 28-47 62-81 (206)
57 COG1924 Activator of 2-hydroxy 74.8 3.5 7.5E-05 35.0 3.3 24 26-49 132-155 (396)
58 PRK00109 Holliday junction res 74.2 4.2 9.2E-05 29.4 3.3 22 28-49 3-24 (138)
59 TIGR03286 methan_mark_15 putat 72.4 8 0.00017 33.1 5.0 21 29-49 144-164 (404)
60 smart00842 FtsA Cell division 71.9 5.6 0.00012 29.7 3.6 26 31-56 1-28 (187)
61 cd00529 RuvC_resolvase Hollida 71.7 4.4 9.5E-05 29.6 2.9 19 30-48 1-19 (154)
62 TIGR02259 benz_CoA_red_A benzo 70.1 4.7 0.0001 34.6 3.1 20 30-49 3-22 (432)
63 TIGR02627 rhamnulo_kin rhamnul 68.4 2.7 5.9E-05 35.8 1.3 17 32-48 1-17 (454)
64 PRK13326 pantothenate kinase; 68.2 6.3 0.00014 31.6 3.3 22 28-49 5-26 (262)
65 TIGR01312 XylB D-xylulose kina 67.7 4.1 8.8E-05 34.7 2.3 18 32-49 1-18 (481)
66 COG0816 Predicted endonuclease 66.6 7.3 0.00016 28.5 3.1 21 29-49 2-22 (141)
67 PRK00039 ruvC Holliday junctio 64.9 7 0.00015 29.1 2.8 20 29-48 2-21 (164)
68 PF06277 EutA: Ethanolamine ut 64.4 8.2 0.00018 33.7 3.5 17 30-46 4-20 (473)
69 PRK13917 plasmid segregation p 64.0 17 0.00037 30.0 5.2 20 28-47 1-20 (344)
70 COG5026 Hexokinase [Carbohydra 63.5 8.4 0.00018 33.4 3.3 21 27-47 73-93 (466)
71 PRK13320 pantothenate kinase; 63.4 9.7 0.00021 30.1 3.5 21 29-49 2-22 (244)
72 COG1521 Pantothenate kinase ty 63.2 13 0.00028 29.8 4.2 19 31-49 2-20 (251)
73 PRK00292 glk glucokinase; Prov 62.4 9.5 0.0002 30.8 3.4 18 30-47 3-20 (316)
74 PRK13331 pantothenate kinase; 62.1 11 0.00023 30.2 3.6 22 28-49 6-27 (251)
75 COG1548 Predicted transcriptio 59.2 6.4 0.00014 32.1 1.8 22 28-49 2-23 (330)
76 PF02075 RuvC: Crossover junct 58.9 12 0.00025 27.4 3.0 18 31-48 1-18 (149)
77 PF13941 MutL: MutL protein 58.4 14 0.0003 32.2 3.8 24 31-55 2-27 (457)
78 PRK10719 eutA reactivating fac 58.0 12 0.00025 32.8 3.3 31 32-67 9-39 (475)
79 PTZ00452 actin; Provisional 57.0 16 0.00035 30.5 4.0 22 28-49 4-25 (375)
80 PTZ00004 actin-2; Provisional 56.9 18 0.0004 30.1 4.3 21 29-49 6-26 (378)
81 PRK15080 ethanolamine utilizat 56.8 12 0.00027 29.6 3.1 21 28-48 23-43 (267)
82 TIGR01174 ftsA cell division p 56.6 19 0.00041 29.8 4.3 26 31-56 2-29 (371)
83 PRK13324 pantothenate kinase; 56.5 14 0.0003 29.5 3.3 19 31-49 2-20 (258)
84 PRK14101 bifunctional glucokin 56.4 9.6 0.00021 34.1 2.6 22 28-49 17-38 (638)
85 TIGR00671 baf pantothenate kin 56.3 20 0.00043 28.3 4.2 18 32-49 2-19 (243)
86 COG4820 EutJ Ethanolamine util 56.0 13 0.00029 29.3 3.0 22 28-49 28-49 (277)
87 PLN02362 hexokinase 55.3 9.3 0.0002 33.6 2.3 21 28-48 94-114 (509)
88 PLN02914 hexokinase 52.4 9.1 0.0002 33.6 1.8 21 28-48 94-114 (490)
89 KOG2517|consensus 52.3 14 0.00031 32.6 3.0 20 29-48 6-25 (516)
90 PF03309 Pan_kinase: Type III 52.1 18 0.00039 27.5 3.2 19 31-49 1-19 (206)
91 TIGR00250 RNAse_H_YqgF RNAse H 51.9 11 0.00024 26.9 1.9 18 32-49 1-18 (130)
92 PRK12408 glucokinase; Provisio 51.8 12 0.00025 30.8 2.2 19 30-48 17-35 (336)
93 PF01548 DEDD_Tnp_IS110: Trans 51.3 34 0.00073 24.0 4.4 19 31-49 1-19 (144)
94 PLN02405 hexokinase 50.0 11 0.00024 33.1 1.9 57 27-83 93-150 (497)
95 PTZ00466 actin-like protein; P 49.8 26 0.00055 29.4 4.0 21 29-49 12-32 (380)
96 PTZ00281 actin; Provisional 47.6 31 0.00066 28.7 4.2 21 29-49 6-26 (376)
97 PTZ00288 glucokinase 1; Provis 47.5 21 0.00046 30.4 3.2 22 27-48 24-45 (405)
98 PF14574 DUF4445: Domain of un 47.1 18 0.00039 31.0 2.8 20 30-49 2-21 (412)
99 PRK09472 ftsA cell division pr 46.5 36 0.00078 28.9 4.5 28 29-56 8-37 (420)
100 PF04848 Pox_A22: Poxvirus A22 46.4 39 0.00084 24.8 4.0 20 29-48 1-20 (143)
101 PF01869 BcrAD_BadFG: BadF/Bad 46.3 24 0.00051 27.7 3.2 18 32-49 1-18 (271)
102 PRK13311 N-acetyl-D-glucosamin 46.1 22 0.00047 27.8 2.9 20 30-49 1-20 (256)
103 TIGR01175 pilM type IV pilus a 45.6 37 0.00081 27.5 4.3 20 29-48 3-22 (348)
104 PF05378 Hydant_A_N: Hydantoin 45.0 25 0.00054 26.3 2.9 18 32-49 2-19 (176)
105 PLN02596 hexokinase-like 44.5 15 0.00033 32.2 1.9 21 28-48 95-115 (490)
106 PTZ00107 hexokinase; Provision 44.4 24 0.00051 30.7 3.1 22 27-48 72-93 (464)
107 PF06406 StbA: StbA protein; 44.3 28 0.0006 28.4 3.3 19 31-49 2-20 (318)
108 PRK13322 pantothenate kinase; 42.1 30 0.00065 27.3 3.1 18 31-48 2-19 (246)
109 COG3734 DgoK 2-keto-3-deoxy-ga 42.0 31 0.00068 28.4 3.2 22 28-49 4-25 (306)
110 COG1940 NagC Transcriptional r 39.3 33 0.00071 27.4 3.0 23 27-49 4-26 (314)
111 COG4020 Uncharacterized protei 39.1 38 0.00083 27.6 3.3 25 28-52 2-26 (332)
112 TIGR00555 panK_eukar pantothen 38.5 35 0.00077 27.7 3.1 19 31-49 2-20 (279)
113 PF00022 Actin: Actin; InterP 37.7 63 0.0014 26.6 4.5 47 28-83 3-54 (393)
114 PLN03207 stomagen; Provisional 37.3 41 0.00088 23.3 2.7 30 8-37 14-43 (113)
115 KOG2912|consensus 37.2 23 0.0005 29.9 1.8 28 18-45 89-118 (419)
116 TIGR01865 cas_Csn1 CRISPR-asso 36.7 34 0.00074 31.8 3.0 20 30-49 2-21 (805)
117 COG0554 GlpK Glycerol kinase [ 35.9 33 0.00071 30.2 2.6 22 28-49 4-25 (499)
118 COG4819 EutA Ethanolamine util 35.5 57 0.0012 27.8 3.8 18 29-46 5-22 (473)
119 TIGR01319 glmL_fam conserved h 35.5 23 0.0005 30.9 1.6 15 34-48 1-15 (463)
120 PRK09698 D-allose kinase; Prov 35.5 54 0.0012 26.0 3.7 22 28-49 3-24 (302)
121 TIGR03739 PRTRC_D PRTRC system 35.3 55 0.0012 26.5 3.8 53 33-85 1-68 (320)
122 PRK09557 fructokinase; Reviewe 34.9 40 0.00087 26.8 2.9 20 30-49 1-20 (301)
123 PRK05082 N-acetylmannosamine k 34.4 43 0.00093 26.5 3.0 21 29-49 1-21 (291)
124 PRK13310 N-acetyl-D-glucosamin 34.1 42 0.00091 26.7 2.9 19 31-49 2-20 (303)
125 COG1069 AraB Ribulose kinase [ 33.9 44 0.00095 29.8 3.1 21 29-49 3-23 (544)
126 PF11104 PilM_2: Type IV pilus 33.6 24 0.00053 28.8 1.4 17 33-49 1-17 (340)
127 COG2410 Predicted nuclease (RN 32.6 89 0.0019 23.7 4.2 28 29-57 1-29 (178)
128 PF01385 OrfB_IS605: Probable 32.1 27 0.0006 26.0 1.4 23 27-49 122-144 (227)
129 COG0145 HyuA N-methylhydantoin 31.3 77 0.0017 29.0 4.3 26 30-56 279-304 (674)
130 TIGR02529 EutJ ethanolamine ut 30.2 31 0.00067 26.9 1.5 17 33-49 1-17 (239)
131 PRK00976 hypothetical protein; 29.4 83 0.0018 26.2 3.9 21 29-49 1-21 (326)
132 TIGR03123 one_C_unchar_1 proba 27.6 52 0.0011 27.2 2.4 18 32-49 1-18 (318)
133 PRK13328 pantothenate kinase; 27.0 72 0.0016 25.3 3.0 21 29-49 1-21 (255)
134 PRK13329 pantothenate kinase; 25.7 63 0.0014 25.6 2.5 18 30-47 2-19 (249)
135 PF04312 DUF460: Protein of un 25.6 1.2E+02 0.0027 22.1 3.8 23 27-49 30-52 (138)
136 KOG1272|consensus 25.0 42 0.00092 29.5 1.5 72 1-73 203-304 (545)
137 KOG1369|consensus 24.9 84 0.0018 27.6 3.3 24 26-49 83-106 (474)
138 PF01968 Hydantoinase_A: Hydan 24.7 98 0.0021 24.9 3.5 27 26-53 74-100 (290)
139 PF05035 DGOK: 2-keto-3-deoxy- 24.4 73 0.0016 25.9 2.7 15 35-49 1-15 (287)
140 TIGR00749 glk glucokinase, pro 23.8 62 0.0013 26.1 2.2 18 32-49 1-18 (316)
141 PF14239 RRXRR: RRXRR protein 23.2 1E+02 0.0022 23.4 3.1 24 26-49 48-71 (176)
142 TIGR00228 ruvC crossover junct 23.2 60 0.0013 24.1 1.8 18 31-48 1-18 (156)
143 PRK14756 hypothetical protein; 22.9 1.1E+02 0.0025 16.1 2.3 22 5-26 5-26 (29)
144 TIGR03123 one_C_unchar_1 proba 22.7 1.1E+02 0.0024 25.4 3.4 26 28-54 127-152 (318)
145 COG4972 PilM Tfp pilus assembl 22.0 1.3E+02 0.0028 25.4 3.7 19 30-48 11-29 (354)
146 COG0849 ftsA Cell division ATP 21.1 1E+02 0.0022 26.6 3.0 26 30-55 7-34 (418)
147 PRK13325 bifunctional biotin-- 21.1 1.1E+02 0.0023 27.5 3.3 24 26-49 335-358 (592)
148 TIGR03285 methan_mark_14 putat 20.8 57 0.0012 27.9 1.4 12 29-40 193-204 (445)
149 PRK03011 butyrate kinase; Prov 20.3 1.3E+02 0.0029 25.1 3.6 21 29-49 2-22 (358)
No 1
>KOG0100|consensus
Probab=99.97 E-value=9.9e-32 Score=222.69 Aligned_cols=116 Identities=28% Similarity=0.381 Sum_probs=107.3
Q ss_pred CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 107 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~ 107 (146)
-+.+||||||||+|||+++.+| +++|+.|++|+|.+||+|+|.+.+|++|.+|++|+..||+||+++.||||||+|+|+
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 3579999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcceEEeecCCCCceEEEEcC--CcEEEeeeee
Q psy351 108 VVQLFKSRFPYYDIVADEERGTIVFKTN--DNELYHVEEL 145 (146)
Q Consensus 108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~~--~~~~~speev 145 (146)
.+|++.++|||+++.+++ ...+.+..+ +.+.|+||||
T Consensus 114 ~vq~Dik~~Pfkvv~k~~-kp~i~v~v~~g~~K~FtPeEi 152 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDG-KPYIQVKVGGGETKVFTPEEI 152 (663)
T ss_pred hhhhhhhcCceEEEcCCC-CccEEEEccCCcccccCHHHH
Confidence 999999999999887765 566666654 4589999997
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.91 E-value=1.6e-24 Score=191.04 Aligned_cols=118 Identities=26% Similarity=0.400 Sum_probs=102.2
Q ss_pred CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 107 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~ 107 (146)
.+.++|||||||||+||++++| ++++++|++|+|.+||+|+|.++++++|+.|++++.++|+++++++||+||++++|+
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 4578999999999999999998 999999999999999999999889999999999999999999999999999999999
Q ss_pred hhhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeeeC
Q psy351 108 VVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELV 146 (146)
Q Consensus 108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev~ 146 (146)
.++...+++||.++..++....+.+.. ++++.|+||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~ 121 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEIS 121 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHH
Confidence 999999999998764322233333433 445789999973
No 3
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.91 E-value=5.2e-24 Score=188.12 Aligned_cols=115 Identities=24% Similarity=0.321 Sum_probs=102.2
Q ss_pred CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 106 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d 106 (146)
.+.++|||||||||+||++++| ++++++|++|+|.+||+|+|. ++++++|..|++++.++|.++++++|||||++++|
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 118 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDE 118 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCc
Confidence 3579999999999999999888 899999999999999999996 46899999999999999999999999999999999
Q ss_pred hhhhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeeeC
Q psy351 107 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146 (146)
Q Consensus 107 ~~v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev~ 146 (146)
+.++...+++||+++.. .+|.+.+..+ ++.|+||||+
T Consensus 119 ~~~~~~~~~~p~~~~~~--~~~~~~~~~~-~~~~speel~ 155 (663)
T PTZ00400 119 DATKKEQKILPYKIVRA--SNGDAWIEAQ-GKKYSPSQIG 155 (663)
T ss_pred HHHHhhhccCCeEEEec--CCCceEEEEC-CEEECHHHHH
Confidence 99999999999987643 2566666655 4799999973
No 4
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.91 E-value=3.3e-24 Score=189.11 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=103.5
Q ss_pred CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 107 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~ 107 (146)
.+.++||||||||||||+++++ ++++++|..|.|.+||+|+|.++++++|..|++++.++|.++++++||+||++++|+
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 3469999999999999999988 899999999999999999999889999999999999999999999999999999999
Q ss_pred hhhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351 108 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145 (146)
Q Consensus 108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev 145 (146)
.++...+.+||+++. +. ++..++..++++.|+||||
T Consensus 105 ~v~~~~~~~p~~vv~-~~-~~~~~i~~~~~~~~speei 140 (657)
T PTZ00186 105 HIQKDIKNVPYKIVR-AG-NGDAWVQDGNGKQYSPSQI 140 (657)
T ss_pred HHHHhhccCcEEEEE-cC-CCceEEEeCCCeEEcHHHH
Confidence 999999999998764 32 5666666555689999997
No 5
>KOG0102|consensus
Probab=99.91 E-value=2.7e-24 Score=182.67 Aligned_cols=116 Identities=28% Similarity=0.380 Sum_probs=108.6
Q ss_pred ccCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCC
Q psy351 26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 104 (146)
Q Consensus 26 ~~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~ 104 (146)
.....++|||+||||||+|++.++ .+.++.|.+|.|.+||.|+|. ++++++|..|++++..||.|+++..||+|||+|
T Consensus 24 ~~~~~vigidlgttnS~va~meg~-~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf 102 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGK-KPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRF 102 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCC-CceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhc
Confidence 567789999999999999999988 888999999999999999995 569999999999999999999999999999999
Q ss_pred CChhhhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351 105 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145 (146)
Q Consensus 105 ~d~~v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev 145 (146)
+||++|++++.+||+++. . .||..|++. +++.|||+|+
T Consensus 103 ~d~evq~~~k~vpyKiVk-~-~ngdaw~e~-~G~~~spsqi 140 (640)
T KOG0102|consen 103 DDPEVQKDIKQVPYKIVK-A-SNGDAWVEA-RGKQYSPSQI 140 (640)
T ss_pred cCHHHHHHHHhCCcceEE-c-cCCcEEEEe-CCeEecHHHH
Confidence 999999999999999876 3 599999998 7899999986
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.89 E-value=6.1e-23 Score=181.46 Aligned_cols=113 Identities=27% Similarity=0.371 Sum_probs=97.2
Q ss_pred CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 107 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~ 107 (146)
+.++|||||||||+||++++| .++++.|++|+|.+||+|+|. ++++++|..|++++.++|.++++++||+||++++|
T Consensus 2 ~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGG-KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECC-eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 368999999999999999998 888999999999999999996 46899999999999999999999999999999987
Q ss_pred hhhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeeeC
Q psy351 108 VVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELV 146 (146)
Q Consensus 108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev~ 146 (146)
++...+++||.+.. + .+|.+.+.. ..++.|+||||+
T Consensus 80 -~~~~~~~~~~~v~~-~-~~g~~~i~~~~~~~~~speel~ 116 (668)
T PRK13410 80 -LDPESKRVPYTIRR-N-EQGNVRIKCPRLEREFAPEELS 116 (668)
T ss_pred -hHHhhccCCeEEEE-C-CCCcEEEEEecCCeEEcHHHHH
Confidence 66677889998754 3 256666654 235799999973
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.88 E-value=6.6e-23 Score=179.99 Aligned_cols=111 Identities=28% Similarity=0.408 Sum_probs=97.5
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 108 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~ 108 (146)
.++|||||||||+||++++| .+++++|++|+|.+||+|+|. ++++++|..|++++.++|.++++++|||||++ ++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGG-EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 58999999999999999988 888999999999999999996 67899999999999999999999999999999 566
Q ss_pred hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeeeC
Q psy351 109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146 (146)
Q Consensus 109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev~ 146 (146)
++.+.+++||+++.. .+|...+..+ ++.|+||||+
T Consensus 80 ~~~~~~~~p~~~~~~--~~~~~~~~~~-~~~~~peel~ 114 (627)
T PRK00290 80 VQKDIKLVPYKIVKA--DNGDAWVEID-GKKYTPQEIS 114 (627)
T ss_pred HHHHhhcCCeEEEEc--CCCceEEEEC-CEEEcHHHHH
Confidence 888889999987643 2565556555 4789999873
No 8
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.88 E-value=1.3e-22 Score=179.01 Aligned_cols=110 Identities=26% Similarity=0.392 Sum_probs=95.5
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-CeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 108 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~ 108 (146)
.++|||||||||+||++++| ++++++|++|+|.+||+|+|.+ +++++|+.|++++.++|.++++++|||||++++|+
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~- 80 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGG-KPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT- 80 (653)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch-
Confidence 58999999999999999999 8889999999999999999964 58999999999999999999999999999999995
Q ss_pred hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351 109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145 (146)
Q Consensus 109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev 145 (146)
+...+++||+++.. .++.+.+..+ ++.|+||||
T Consensus 81 -~~~~~~~~~~~v~~--~~~~~~~~i~-~~~~~peei 113 (653)
T PRK13411 81 -EEERSRVPYTCVKG--RDDTVNVQIR-GRNYTPQEI 113 (653)
T ss_pred -hHHhhcCCceEEec--CCCceEEEEC-CEEECHHHH
Confidence 44567899987643 2565556555 478999987
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.88 E-value=1.1e-22 Score=179.89 Aligned_cols=115 Identities=24% Similarity=0.382 Sum_probs=98.2
Q ss_pred cCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCC
Q psy351 27 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 105 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~ 105 (146)
....++|||||||||+||++++| ++++++|++|+|.+||+|+|. ++++++|..|++++.++|.++++++|||||++++
T Consensus 37 ~~~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 115 (673)
T PLN03184 37 VAEKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS 115 (673)
T ss_pred cCCCEEEEEeCcCcEEEEEEECC-eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcc
Confidence 34569999999999999999998 888999999999999999996 4589999999999999999999999999999998
Q ss_pred ChhhhhhccCcceEEeecCCCCceEEEEcC-CcEEEeeeeeC
Q psy351 106 SPVVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELV 146 (146)
Q Consensus 106 d~~v~~~~~~~p~~~v~~d~~~g~~~~~~~-~~~~~speev~ 146 (146)
| ++...+.+||.++.. .+|.+.+... .++.|+||||+
T Consensus 116 d--~~~~~~~~~~~v~~~--~~~~v~~~~~~~~~~~speei~ 153 (673)
T PLN03184 116 E--VDEESKQVSYRVVRD--ENGNVKLDCPAIGKQFAAEEIS 153 (673)
T ss_pred h--hhhhhhcCCeEEEec--CCCcEEEEEecCCeEEcHHHHH
Confidence 7 567778899987643 2566666542 35789999873
No 10
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.87 E-value=1.7e-22 Score=175.09 Aligned_cols=113 Identities=40% Similarity=0.602 Sum_probs=95.6
Q ss_pred EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChhhh
Q psy351 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQ 110 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~v~ 110 (146)
++||||||+||+||++.++ +++++.|..|+|++||+|+|.++++++|..|..+..++|+++++++|||||++++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 6899999999999999998 999999999999999999999889999999999999999999999999999999999999
Q ss_pred hhccCcceEEeecCCCCceEEEEc---CCcEEEeeeeeC
Q psy351 111 LFKSRFPYYDIVADEERGTIVFKT---NDNELYHVEELV 146 (146)
Q Consensus 111 ~~~~~~p~~~v~~d~~~g~~~~~~---~~~~~~speev~ 146 (146)
+..+.+||.++..+ +|...+.. ++.+.|+|+|++
T Consensus 80 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 116 (602)
T PF00012_consen 80 KEKKKFPYKVVEDP--DGKVYFEVDYDGKSKTYSPEELS 116 (602)
T ss_dssp HHHTTSSSEEEEET--TTEEEEEEEETTEEEEEEHHHHH
T ss_pred hhhhcccccccccc--cccccccccccccceeeeeeccc
Confidence 99999999876542 34444432 334689999873
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.87 E-value=2.8e-22 Score=174.95 Aligned_cols=110 Identities=30% Similarity=0.487 Sum_probs=95.6
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-CeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 108 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~ 108 (146)
.++|||||||||+||++++| .++++.|++|+|.+||+|+|.+ +++++|..|++++.++|.++++++||+||+++++
T Consensus 1 ~viGIDlGtt~s~va~~~~g-~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~-- 77 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGG-EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDE-- 77 (595)
T ss_pred CEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchH--
Confidence 37999999999999999999 8889999999999999999974 4899999999999999999999999999999954
Q ss_pred hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeeeC
Q psy351 109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146 (146)
Q Consensus 109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev~ 146 (146)
++...+++||+ +.. .+|.+.+..+ ++.|+||||+
T Consensus 78 ~~~~~~~~~~~-v~~--~~~~~~~~v~-~~~~~peel~ 111 (595)
T TIGR02350 78 VTEEAKRVPYK-VVG--DGGDVRVKVD-GKEYTPQEIS 111 (595)
T ss_pred HHHHhhcCCee-EEc--CCCceEEEEC-CEEecHHHHH
Confidence 77778899998 333 2566666665 4789999873
No 12
>CHL00094 dnaK heat shock protein 70
Probab=99.87 E-value=5.3e-22 Score=174.21 Aligned_cols=113 Identities=24% Similarity=0.336 Sum_probs=96.6
Q ss_pred CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-CeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 107 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~ 107 (146)
+.++|||||||||+||++++| .++++.|++|+|.+||+|+|.+ +++++|+.|++++..+|.++++++||+||++++|
T Consensus 2 ~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGG-KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH-
Confidence 368999999999999999999 8899999999999999999964 5899999999999999999999999999999987
Q ss_pred hhhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeeeC
Q psy351 108 VVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELV 146 (146)
Q Consensus 108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev~ 146 (146)
++...+.+||.++.. .+|.+.+.. ..++.|+||||+
T Consensus 80 -~~~~~~~~~~~v~~~--~~g~i~~~~~~~~~~~s~eei~ 116 (621)
T CHL00094 80 -ISEEAKQVSYKVKTD--SNGNIKIECPALNKDFSPEEIS 116 (621)
T ss_pred -HHhhhhcCCeEEEEC--CCCCEEEEEecCCeEEcHHHHH
Confidence 666677899987543 256666653 235789999873
No 13
>KOG0101|consensus
Probab=99.87 E-value=6e-22 Score=171.86 Aligned_cols=118 Identities=27% Similarity=0.404 Sum_probs=103.6
Q ss_pred cCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCC
Q psy351 27 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 106 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d 106 (146)
..+.++|||||||++||+++..+ +++++.|++|+|.+||+|+|.+.++++|.+|+++...+|.|+++++||+||+.++|
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred cccceeeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 45689999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeee
Q psy351 107 PVVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEEL 145 (146)
Q Consensus 107 ~~v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev 145 (146)
|.+|.++++|||++...++....+.+.. ++.+.|+|||+
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peei 123 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEI 123 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecccccceeeeeeee
Confidence 9999999999998763333233444443 44578999986
No 14
>KOG0103|consensus
Probab=99.86 E-value=1.3e-22 Score=175.99 Aligned_cols=117 Identities=26% Similarity=0.380 Sum_probs=108.4
Q ss_pred CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 108 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~ 108 (146)
|.++|||||+.||.+|+.+.+ .++++.|+.++|.+|++|+|..++|++|.+|+++..+|+.|++.++|||+||+|+||.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 348999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcceEEee-cCCCCceEEEEcCCcEEEeeeeeC
Q psy351 109 VQLFKSRFPYYDIV-ADEERGTIVFKTNDNELYHVEELV 146 (146)
Q Consensus 109 v~~~~~~~p~~~v~-~d~~~g~~~~~~~~~~~~speev~ 146 (146)
+|.+.+++|+.++. +|+..|..+-+.++.+.|+|+||+
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~ 118 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVL 118 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHH
Confidence 99999999998764 576667666677888999999985
No 15
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.86 E-value=7.5e-22 Score=172.73 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=93.4
Q ss_pred EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-CeeeecHhHHHhhhcCCCCeeecchhhccCCCCChhh
Q psy351 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 109 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~v 109 (146)
+||||||||||+||++++| +++++.|.+|++.+||+|+|.+ +++++|..|++++.++|.++++++|||||++++|+
T Consensus 1 ~iGIDlGTtns~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~-- 77 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSG-VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDI-- 77 (599)
T ss_pred CEEEEEccccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccch--
Confidence 5899999999999999998 8999999999999999999975 48999999999999999999999999999999884
Q ss_pred hhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351 110 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145 (146)
Q Consensus 110 ~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev 145 (146)
+. .+.+||+++.. .+|.+.+...+ ..++|+||
T Consensus 78 ~~-~~~~~~~~~~~--~~~~~~~~~~~-~~~~p~ei 109 (599)
T TIGR01991 78 KT-FSILPYRFVDG--PGEMVRLRTVQ-GTVTPVEV 109 (599)
T ss_pred hh-cccCCEEEEEc--CCCceEEEeCC-CEEcHHHH
Confidence 33 56789986532 35677776654 48999987
No 16
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.86 E-value=1.3e-21 Score=171.77 Aligned_cols=111 Identities=22% Similarity=0.342 Sum_probs=96.4
Q ss_pred CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 108 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~ 108 (146)
..+||||||||||+||++.+| ++++++|.+|++.+||+|+|.++++++|..|++++.++|.++++++|||||++++|
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSG-QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CeEEEEEeccccEEEEEEECC-EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 468999999999999999998 88999999999999999999877899999999999999999999999999999987
Q ss_pred hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351 109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145 (146)
Q Consensus 109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev 145 (146)
++...+.+||.+... .+|.+.+...+ ..|+||||
T Consensus 96 ~~~~~~~~~~~~~~~--~~g~~~~~~~~-~~~~p~ei 129 (616)
T PRK05183 96 IQQRYPHLPYQFVAS--ENGMPLIRTAQ-GLKSPVEV 129 (616)
T ss_pred hhhhhhcCCeEEEec--CCCceEEEecC-CeEcHHHH
Confidence 455567789976532 25777776654 48899987
No 17
>KOG0104|consensus
Probab=99.85 E-value=1.1e-21 Score=171.38 Aligned_cols=133 Identities=57% Similarity=0.976 Sum_probs=120.9
Q ss_pred HHHHHHHHhhhcccCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCee
Q psy351 14 SSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 93 (146)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i 93 (146)
..++|+.++.......++++||+|+.++.||++.+|-+++|++|.+++|++|+.|+|.+++|++|.+|.+++.++|.+++
T Consensus 7 lv~l~~~~~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~ 86 (902)
T KOG0104|consen 7 LVILLLCLFVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTY 86 (902)
T ss_pred HHHHHHHHHhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHH
Confidence 34455566666778889999999999999999999989999999999999999999999999999999999999999999
Q ss_pred ecchhhccCCCCChhhhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeeeC
Q psy351 94 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146 (146)
Q Consensus 94 ~~~KrliG~~~~d~~v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev~ 146 (146)
..+|.++|++.+||.++.+.+++||..++.|+.++.+.|..++...||+||++
T Consensus 87 ~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEell 139 (902)
T KOG0104|consen 87 RQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELL 139 (902)
T ss_pred HHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHH
Confidence 99999999999999999999999997666666789999998877899999974
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.5e-18 Score=147.15 Aligned_cols=76 Identities=28% Similarity=0.362 Sum_probs=70.1
Q ss_pred CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC-eeeecHhHHHhhhcCCCCeeecchhhccCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 103 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~~i~~~KrliG~~ 103 (146)
.+.++||||||||||||+++++..++++.|..|.|.+||+|+|.++ ++++|+.|++++..+|.++++++||++|++
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~ 80 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG 80 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCC
Confidence 3578999999999999999977458899999999999999999855 699999999999999999999999999997
No 19
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.72 E-value=9e-18 Score=147.07 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=76.3
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChhh
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 109 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~v 109 (146)
.+||||||||||+||++.+| +++++.|++|++.+||+|+|.++++++|..| +++++||+||++++|...
T Consensus 20 ~viGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 58999999999999999888 8999999999999999999987789999987 789999999999987321
Q ss_pred hhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351 110 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145 (146)
Q Consensus 110 ~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev 145 (146)
+..........+.. + ++...+..+ ++.|+||||
T Consensus 89 ~~~~~~~~k~~~~~-~-~~~~~~~~~-~~~~speei 121 (595)
T PRK01433 89 TPALFSLVKDYLDV-N-SSELKLNFA-NKQLRIPEI 121 (595)
T ss_pred chhhHhhhhheeec-C-CCeeEEEEC-CEEEcHHHH
Confidence 11100011111111 1 334455544 478999987
No 20
>PRK11678 putative chaperone; Provisional
Probab=99.59 E-value=2e-15 Score=128.57 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=66.2
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc--------------------------------------
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-------------------------------------- 71 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-------------------------------------- 71 (146)
+++|||||||||+||++++| +++++++++|++.+||+|+|.
T Consensus 1 ~~iGID~GTtNs~va~~~~~-~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDG-KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDI 79 (450)
T ss_pred CeEEEecCccceeeEEeeCC-ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccc
Confidence 36899999999999999988 889999999999999999993
Q ss_pred ---CCeeeecHhHHHhhhcCCCCe--eecchhhccCC
Q psy351 72 ---KGERTFGEDAQIIGTRFPSNS--YGYFLDLLGKS 103 (146)
Q Consensus 72 ---~~~~~vG~~A~~~~~~~p~~~--i~~~KrliG~~ 103 (146)
+++.++|..|++++..+|.++ ++++||+||.+
T Consensus 80 ~~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~ 116 (450)
T PRK11678 80 DVTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGAS 116 (450)
T ss_pred cccccccchhHHHHHhhccCCCCceEEecchhhhccC
Confidence 346789999999999999988 88999999965
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.50 E-value=2.6e-07 Score=75.92 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=43.5
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC-e--eeecHhHHHhhhcCCCCeeec
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGY 95 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~-~--~~vG~~A~~~~~~~p~~~i~~ 95 (146)
..+||||||+|+++ +.++ +. ++.|+ ||+|+++++ . ..+|.+|++++.++|.++...
T Consensus 5 ~~~giDlGt~~~~i--~~~~-~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~ 63 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKN-KG-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV 63 (335)
T ss_pred CeEEEEcccccEEE--EECC-Cc-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE
Confidence 36999999999986 4455 32 45564 999999743 2 589999999999999987553
No 22
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.25 E-value=1.9e-06 Score=70.49 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=39.6
Q ss_pred EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC-----e--eeecHhHHHhhhcCCCCe
Q psy351 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----E--RTFGEDAQIIGTRFPSNS 92 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~-----~--~~vG~~A~~~~~~~p~~~ 92 (146)
.+||||||+||+++....+ . ++ . .||+|++.++ + ..+|.+|++++.+.|.++
T Consensus 4 ~~giDlGt~~s~i~~~~~~--~-~~-~------~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~ 62 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRG--I-VL-N------EPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNI 62 (333)
T ss_pred eeEEecCcceEEEEECCCC--E-EE-e------cCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCE
Confidence 3999999999999875433 2 33 2 5999999632 2 679999999988877765
No 23
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.16 E-value=4.1e-06 Score=68.60 Aligned_cols=53 Identities=28% Similarity=0.398 Sum_probs=41.3
Q ss_pred EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC---eeeecHhHHHhhhcCCCCee
Q psy351 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSY 93 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~---~~~vG~~A~~~~~~~p~~~i 93 (146)
-+||||||+|++|+...++ .++. .||+|++.++ -..+|.+|++++.+.|.+..
T Consensus 5 ~~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~ 60 (336)
T PRK13928 5 DIGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIV 60 (336)
T ss_pred eeEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEE
Confidence 4899999999999886444 3433 3999999742 34799999999888888765
No 24
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.11 E-value=5.9e-06 Score=67.78 Aligned_cols=54 Identities=31% Similarity=0.444 Sum_probs=46.2
Q ss_pred CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC--C---eeeecHhHHHhhhcCCCCe
Q psy351 29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--G---ERTFGEDAQIIGTRFPSNS 92 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~--~---~~~vG~~A~~~~~~~p~~~ 92 (146)
+..+||||||.|+.|+....| +++|+ ||+|+... + -..+|.+|+++.-+.|.|.
T Consensus 6 s~diGIDLGTanTlV~~k~kg----IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni 64 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG----IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI 64 (342)
T ss_pred cccceeeecccceEEEEcCce----EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc
Confidence 458999999999999887666 88888 99999965 2 3479999999999999885
No 25
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.06 E-value=3.8e-06 Score=69.24 Aligned_cols=53 Identities=28% Similarity=0.529 Sum_probs=40.4
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC---eeeecHhHHHhhhcCCCCe
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNS 92 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~---~~~vG~~A~~~~~~~p~~~ 92 (146)
..+||||||+|+.|+.-.+| ++.++ ||+|+++.+ -..+|++|+++..+.|.+.
T Consensus 2 ~~igIDLGT~~t~i~~~~~G----iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i 57 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG----IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI 57 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE----EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE
T ss_pred CceEEecCcccEEEEECCCC----EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc
Confidence 46999999999998765555 66776 999999742 4568999999999999875
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=97.88 E-value=3.1e-05 Score=63.03 Aligned_cols=52 Identities=29% Similarity=0.437 Sum_probs=39.5
Q ss_pred EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC---CeeeecHhHHHhhhcCCCCe
Q psy351 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK---GERTFGEDAQIIGTRFPSNS 92 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~---~~~~vG~~A~~~~~~~p~~~ 92 (146)
.+||||||+|++++....+ . ++ + +||+|++.+ +..++|.+|++...+.|.+.
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~-~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~ 64 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--I-VL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNI 64 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--E-EE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCe
Confidence 4999999999999886332 2 22 2 499999964 24689999999887777654
No 27
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=97.77 E-value=6.1e-05 Score=61.41 Aligned_cols=53 Identities=28% Similarity=0.430 Sum_probs=39.5
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC---eeeecHhHHHhhhcCCCCe
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNS 92 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~---~~~vG~~A~~~~~~~p~~~ 92 (146)
..+||||||+|++++. .++.. ++ + +||+|++.+. ..++|.+|+++..+.|.++
T Consensus 6 ~~igIDlGt~~~~i~~--~~~~~-~~-~------~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~ 61 (334)
T PRK13927 6 NDLGIDLGTANTLVYV--KGKGI-VL-N------EPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNI 61 (334)
T ss_pred ceeEEEcCcceEEEEE--CCCcE-EE-e------cCCEEEEECCCCeEEEecHHHHHHhhcCCCCE
Confidence 4699999999999854 34222 32 2 6999999643 3489999999988887765
No 28
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=92.13 E-value=0.2 Score=38.93 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=17.7
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
.++|||+|||++++++++..
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 37899999999999999854
No 29
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=90.47 E-value=0.32 Score=32.19 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=17.5
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
.++|||+|.|++.+|+.+..
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred cEEEEccCCCeEEEEEECCC
Confidence 47999999999999998644
No 30
>PRK10331 L-fuculokinase; Provisional
Probab=88.69 E-value=0.51 Score=40.43 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.2
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
..++|||+|||++++++++..
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred ceEEEEecCCCceEEEEEcCC
Confidence 357999999999999999754
No 31
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=88.52 E-value=0.68 Score=40.18 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
...++|||+|||++++.+++..
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 4688999999999999999876
No 32
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=86.84 E-value=0.78 Score=39.84 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.1
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
.++|||+|||++++++++..
T Consensus 4 ~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 68999999999999999854
No 33
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=86.68 E-value=0.75 Score=39.38 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=17.8
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
.++|||+|||++++++++..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 37899999999999999865
No 34
>PRK15027 xylulokinase; Provisional
Probab=86.64 E-value=0.72 Score=39.65 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=17.3
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
++|||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEEecccceEEEEEcCC
Confidence 6899999999999999864
No 35
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=86.61 E-value=1.5 Score=31.66 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=18.7
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
|.++|||+|+..+-+|+.++.
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 568999999999999999886
No 36
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=85.81 E-value=0.87 Score=39.83 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.5
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
.++|||+|||++++++++..
T Consensus 1 ~~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDST 20 (541)
T ss_pred CEEEEEecCcCEEEEEEcCC
Confidence 36899999999999999754
No 37
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=85.58 E-value=0.79 Score=35.94 Aligned_cols=19 Identities=26% Similarity=0.491 Sum_probs=16.9
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
++|||.|||++++++++++
T Consensus 2 ~lGIDiGtts~K~vl~d~g 20 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDG 20 (248)
T ss_pred EEEEEcChhheEEEEEcCC
Confidence 6899999999999999844
No 38
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=85.46 E-value=1.5 Score=36.09 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=30.4
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-C--------eeeecHhHHHh
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-G--------ERTFGEDAQII 84 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~--------~~~vG~~A~~~ 84 (146)
..+.||+||.++++.+..+. .+.+ ..||+|+... . ..++|.+|...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~-~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~ 56 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGED-EPQV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEK 56 (373)
T ss_pred CeEEEECCCCcEEEeeCCCC-CCcE--------EccceeeEecccccccCCCcceEecchhhhc
Confidence 46899999999999876544 2322 2377776532 1 35789888543
No 39
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=85.03 E-value=0.98 Score=39.04 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=17.2
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
++|||+|||++++++++..
T Consensus 2 ~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred EEEEeccccceEEEEEcCC
Confidence 6899999999999999754
No 40
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=84.95 E-value=1 Score=39.02 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.0
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
.++|||+|||++++++++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~ 22 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEK 22 (504)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 57999999999999999865
No 41
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=84.95 E-value=1.5 Score=37.84 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=17.7
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
.++|||+|||++++++++..
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred eEEEEecCCCceEEEEECCC
Confidence 47999999999999999754
No 42
>PRK00047 glpK glycerol kinase; Provisional
Probab=84.93 E-value=1.1 Score=38.75 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.1
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
..++|||+|||++++++++..
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred CEEEEEecCCCceEEEEECCC
Confidence 358999999999999999754
No 43
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=84.52 E-value=1 Score=36.87 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
.+..+|||.|+|++++++.+++
T Consensus 31 ~m~~~GIDiGStt~K~Vlld~~ 52 (293)
T TIGR03192 31 KIITCGIDVGSVSSQAVLVCDG 52 (293)
T ss_pred ccEEEEEEeCchhEEEEEEeCC
Confidence 3678999999999999999855
No 44
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=84.17 E-value=0.17 Score=38.67 Aligned_cols=32 Identities=6% Similarity=-0.048 Sum_probs=24.2
Q ss_pred HHHHhhhcccCCcEEEEEcCCccEEEEEEeCC
Q psy351 18 LLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 18 ~~~~~~~~~~~~~~iGIDlGTtns~va~~~~~ 49 (146)
|.-+|.+.-+..-.+|+|+||+|++++...+.
T Consensus 46 ~sra~~~kp~~~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 46 FSRAFGSKPVVNDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred HHHHhcCCCCccceeccCCCcchHHHHHHhcc
Confidence 34455555666789999999999999887654
No 45
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=84.17 E-value=1.3 Score=38.70 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=16.9
Q ss_pred cEEEEEcCCccEEEEEEe
Q psy351 30 AVMSVDLGSEWMKVAIVS 47 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~ 47 (146)
.++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 479999999999999999
No 46
>PLN02295 glycerol kinase
Probab=83.64 E-value=1.2 Score=38.60 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=17.1
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
++|||+|||++++++++..
T Consensus 2 vlgID~GTts~Ka~l~d~~ 20 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRD 20 (512)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 6899999999999999754
No 47
>PRK04123 ribulokinase; Provisional
Probab=82.72 E-value=1.3 Score=38.65 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=17.7
Q ss_pred CcEEEEEcCCccEEEEEEeC
Q psy351 29 IAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~ 48 (146)
..++|||+|||++++++++.
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~ 22 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDC 22 (548)
T ss_pred cEEEEEecCCCceEEEEEEC
Confidence 35899999999999999983
No 48
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=82.01 E-value=2.1 Score=35.30 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=30.1
Q ss_pred EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc----------CCeeeecHhHHHhh
Q psy351 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH----------KGERTFGEDAQIIG 85 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~----------~~~~~vG~~A~~~~ 85 (146)
.+.||+||.++++.+..+. .+.. .+||+++.. +...++|.+|....
T Consensus 1 ~iViD~Gs~~~r~G~a~~~-~p~~--------~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~ 56 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGED-APRV--------VFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKR 56 (371)
T ss_pred CEEEECCCCeEEEEeCCCC-CCce--------EeeccceeecCcccccccCCCceEEchhhhhCC
Confidence 3789999999999877555 2221 235555442 24668899887653
No 49
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=81.79 E-value=2 Score=30.00 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=16.5
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
+++||+|++.++++++..+
T Consensus 1 i~~iDiGs~~~~~~i~~~~ 19 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG 19 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT
T ss_pred CEEEEcCCCcEEEEEEEeC
Confidence 5799999999999999887
No 50
>PRK13321 pantothenate kinase; Reviewed
Probab=80.73 E-value=1.9 Score=34.04 Aligned_cols=20 Identities=15% Similarity=0.424 Sum_probs=17.8
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
++++||+|+|++++++++++
T Consensus 1 MiL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred CEEEEEECCCeEEEEEEECC
Confidence 36899999999999999865
No 51
>PRK13318 pantothenate kinase; Reviewed
Probab=79.56 E-value=2.3 Score=33.61 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=17.5
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
+++||+|+|++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 6899999999999999865
No 52
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=79.55 E-value=3 Score=33.55 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=16.9
Q ss_pred cEEEEEcCCccEEEEEEeC
Q psy351 30 AVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~ 48 (146)
..+|||.|+|.+++.+.++
T Consensus 2 ~~~GIDiGStttK~Vlid~ 20 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV 20 (262)
T ss_pred eEEEEEcCcccEEEEEEec
Confidence 3689999999999999984
No 53
>PLN02669 xylulokinase
Probab=79.46 E-value=2.4 Score=37.42 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=19.5
Q ss_pred cCCcEEEEEcCCccEEEEEEeCC
Q psy351 27 YGIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~~~ 49 (146)
....++|||+||+.+++++++..
T Consensus 6 ~~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 6 EDSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCCeEEEEecccCCeEEEEEcCC
Confidence 34568999999999999999855
No 54
>PTZ00280 Actin-related protein 3; Provisional
Probab=79.17 E-value=4.2 Score=34.27 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
....|.||+|+.++++.+....
T Consensus 3 ~~~~iViD~GS~~~k~G~ag~~ 24 (414)
T PTZ00280 3 TLPVVVIDNGTGYTKMGYAGNT 24 (414)
T ss_pred CCCeEEEECCCCceEeeeCCCC
Confidence 3457999999999999887544
No 55
>PRK13317 pantothenate kinase; Provisional
Probab=76.68 E-value=3 Score=33.71 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=18.4
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
+..+|||.|+|.+++++.+++
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~ 22 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEK 22 (277)
T ss_pred CceEEEEeCcccEEEEEEcCC
Confidence 467899999999999998766
No 56
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=75.24 E-value=2.9 Score=32.27 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCccEEEEEEe
Q psy351 28 GIAVMSVDLGSEWMKVAIVS 47 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~ 47 (146)
.+..++||||.||..|+.++
T Consensus 62 ~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEE
T ss_pred CceEEEEeecCcEEEEEEEE
Confidence 35789999999999999986
No 57
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=74.77 E-value=3.5 Score=35.03 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.4
Q ss_pred ccCCcEEEEEcCCccEEEEEEeCC
Q psy351 26 SYGIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 26 ~~~~~~iGIDlGTtns~va~~~~~ 49 (146)
-..+..+|||-|+|.+++.+++++
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d~ 155 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMEDG 155 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeCC
Confidence 445789999999999999999988
No 58
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=74.22 E-value=4.2 Score=29.37 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
.+.++|||+|+..+-+|+.++.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 4679999999999999998764
No 59
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=72.42 E-value=8 Score=33.09 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=18.5
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
+..+|||.|+|.+++++.+++
T Consensus 144 g~~lGIDiGSTttK~Vl~dd~ 164 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVMEDN 164 (404)
T ss_pred CEEEEEEcChhheeeEEEcCC
Confidence 478999999999999998754
No 60
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=71.95 E-value=5.6 Score=29.69 Aligned_cols=26 Identities=12% Similarity=0.297 Sum_probs=18.7
Q ss_pred EEEEEcCCccEEEEEEeC--CCceEEEe
Q psy351 31 VMSVDLGSEWMKVAIVSP--GVPMEIAL 56 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~--~~~~~iv~ 56 (146)
++|||+||++.++.+.+. ++.++++-
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g 28 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIG 28 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEE
Confidence 479999999999877742 22566653
No 61
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=71.72 E-value=4.4 Score=29.63 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=16.6
Q ss_pred cEEEEEcCCccEEEEEEeC
Q psy351 30 AVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~ 48 (146)
.++|||.|++|+-.|+.+.
T Consensus 1 rILGIDPGl~~~G~av~~~ 19 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQ 19 (154)
T ss_pred CEEEEccCcCceEEEEEEe
Confidence 3799999999999999863
No 62
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=70.14 E-value=4.7 Score=34.65 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.2
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
..+|||.|+|.+++.+++.+
T Consensus 3 y~lGIDIGSTsTKaVVmd~~ 22 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDK 22 (432)
T ss_pred eEEEEEcCchhEEEEEEcCC
Confidence 57899999999999999876
No 63
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=68.42 E-value=2.7 Score=35.79 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=15.3
Q ss_pred EEEEcCCccEEEEEEeC
Q psy351 32 MSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 32 iGIDlGTtns~va~~~~ 48 (146)
+|||+|||++++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999999875
No 64
>PRK13326 pantothenate kinase; Reviewed
Probab=68.20 E-value=6.3 Score=31.59 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
-++.+.||.|+||+++++++++
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDN 26 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECC
Confidence 3567899999999999999976
No 65
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=67.66 E-value=4.1 Score=34.66 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=16.1
Q ss_pred EEEEcCCccEEEEEEeCC
Q psy351 32 MSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 32 iGIDlGTtns~va~~~~~ 49 (146)
+|||+||+++++++++..
T Consensus 1 lgIDiGtt~ik~~l~d~~ 18 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQ 18 (481)
T ss_pred CceeecCcceEEEEECCC
Confidence 699999999999999854
No 66
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=66.58 E-value=7.3 Score=28.50 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=18.8
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
+.++|+|+||-.+-||+-+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 578999999999999998765
No 67
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=64.87 E-value=7 Score=29.10 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=17.8
Q ss_pred CcEEEEEcCCccEEEEEEeC
Q psy351 29 IAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~ 48 (146)
+.++|||-|++++-+|+.+.
T Consensus 2 m~iLGIDPgl~~tG~avi~~ 21 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEV 21 (164)
T ss_pred CEEEEEccccCceeEEEEEe
Confidence 67899999999999999864
No 68
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=64.43 E-value=8.2 Score=33.69 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=13.9
Q ss_pred cEEEEEcCCccEEEEEE
Q psy351 30 AVMSVDLGSEWMKVAIV 46 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~ 46 (146)
..+|||+|||.+.+-+-
T Consensus 4 ~SVGIDIGTSTTQlvfS 20 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFS 20 (473)
T ss_pred EEEEEeecCCceeEEEE
Confidence 46899999999987543
No 69
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=64.00 E-value=17 Score=30.01 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=16.9
Q ss_pred CCcEEEEEcCCccEEEEEEe
Q psy351 28 GIAVMSVDLGSEWMKVAIVS 47 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~ 47 (146)
.|.++|||+|.-|++.+.-.
T Consensus 1 ~~~v~~iDiG~g~tK~~~~~ 20 (344)
T PRK13917 1 NVYVMALDFGNGFVKGKIND 20 (344)
T ss_pred CceEEEEeccCCeEEEEecC
Confidence 36789999999999997753
No 70
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=63.45 E-value=8.4 Score=33.37 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.3
Q ss_pred cCCcEEEEEcCCccEEEEEEe
Q psy351 27 YGIAVMSVDLGSEWMKVAIVS 47 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~ 47 (146)
..+.++.||||.||..++.+.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCCCEEEEecCCceEEEEEEE
Confidence 356799999999999999886
No 71
>PRK13320 pantothenate kinase; Reviewed
Probab=63.36 E-value=9.7 Score=30.07 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.9
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
++.+.||.|+|++++++++++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECC
Confidence 358999999999999999876
No 72
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=63.18 E-value=13 Score=29.80 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=17.4
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
.+.||.|+|++..|+++++
T Consensus 2 ~L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGG 20 (251)
T ss_pred eEEEEeCCCeEEEEEecCC
Confidence 5789999999999999876
No 73
>PRK00292 glk glucokinase; Provisional
Probab=62.35 E-value=9.5 Score=30.77 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=16.8
Q ss_pred cEEEEEcCCccEEEEEEe
Q psy351 30 AVMSVDLGSEWMKVAIVS 47 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~ 47 (146)
.++|||+|.|++.+++++
T Consensus 3 ~~lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 3 PALVGDIGGTNARFALCD 20 (316)
T ss_pred eEEEEEcCccceEEEEEe
Confidence 479999999999999997
No 74
>PRK13331 pantothenate kinase; Reviewed
Probab=62.10 E-value=11 Score=30.17 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
++..+.||.|+||+++++++++
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECC
Confidence 5678999999999999999976
No 75
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=59.19 E-value=6.4 Score=32.14 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
.+.++|||.|..|+.+|..+..
T Consensus 2 ~~kilGiDIGGAntk~a~~DG~ 23 (330)
T COG1548 2 KMKILGIDIGGANTKIASSDGD 23 (330)
T ss_pred CceEEEeeccCccchhhhccCC
Confidence 5789999999999999985433
No 76
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=58.93 E-value=12 Score=27.35 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=14.3
Q ss_pred EEEEEcCCccEEEEEEeC
Q psy351 31 VMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~ 48 (146)
++|||-|++++-.|+++.
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 689999999999999864
No 77
>PF13941 MutL: MutL protein
Probab=58.42 E-value=14 Score=32.21 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEEcCCccEEEEEEe--CCCceEEE
Q psy351 31 VMSVDLGSEWMKVAIVS--PGVPMEIA 55 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~--~~~~~~iv 55 (146)
++-+|||+|++++..++ .+ ..+++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~-~~~~i 27 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDG-EPRLI 27 (457)
T ss_pred EEEEEeCCcceEEeEEeccCC-ccEEE
Confidence 67899999999999998 55 45454
No 78
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=58.02 E-value=12 Score=32.81 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=0.0
Q ss_pred EEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEE
Q psy351 32 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTL 67 (146)
Q Consensus 32 iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~ 67 (146)
+|||.|||.+.+ +.++= .+.|..+.-..|.+
T Consensus 9 VGIDIGTsTTql-vfSrl----~l~n~a~~~~vpr~ 39 (475)
T PRK10719 9 VGIDIGTTTTQV-IFSRL----ELENRASVFQVPRI 39 (475)
T ss_pred EEEeccCceEEE-EEEEE----EEecccccccCceE
No 79
>PTZ00452 actin; Provisional
Probab=57.04 E-value=16 Score=30.48 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
+...+-||+|+.++++.+....
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~ 25 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDD 25 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCC
Confidence 4567999999999999987555
No 80
>PTZ00004 actin-2; Provisional
Probab=56.93 E-value=18 Score=30.07 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.4
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
...+-||+|+.++++.+..+.
T Consensus 6 ~~~vViD~Gs~~~k~G~ag~~ 26 (378)
T PTZ00004 6 TNAAVVDNGSGMVKAGFAGDD 26 (378)
T ss_pred CCeEEEECCCCeEEEeeCCCC
Confidence 457999999999999887554
No 81
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=56.77 E-value=12 Score=29.65 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCccEEEEEEeC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~ 48 (146)
...++|||+||+..++.+.+.
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~ 43 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDE 43 (267)
T ss_pred CCEEEEEEccCceEEEEEEcC
Confidence 567899999999999777653
No 82
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=56.65 E-value=19 Score=29.78 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=18.9
Q ss_pred EEEEEcCCccEEEEEEeC--CCceEEEe
Q psy351 31 VMSVDLGSEWMKVAIVSP--GVPMEIAL 56 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~--~~~~~iv~ 56 (146)
++|||+||++.++.+.+. ++.++++.
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~ 29 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIG 29 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEE
Confidence 689999999999887652 22366653
No 83
>PRK13324 pantothenate kinase; Reviewed
Probab=56.46 E-value=14 Score=29.53 Aligned_cols=19 Identities=11% Similarity=0.501 Sum_probs=17.3
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
++.||.|+||+++++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 6889999999999999865
No 84
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=56.37 E-value=9.6 Score=34.11 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
...++|||+|.||+.+++++..
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~~ 38 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETGP 38 (638)
T ss_pred CCCEEEEEcCchhheeeeecCC
Confidence 4579999999999999999643
No 85
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=56.28 E-value=20 Score=28.25 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=16.4
Q ss_pred EEEEcCCccEEEEEEeCC
Q psy351 32 MSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 32 iGIDlGTtns~va~~~~~ 49 (146)
+.||.|+||+++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 579999999999999876
No 86
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=55.98 E-value=13 Score=29.34 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=18.1
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
+..-+|+||||.+.+.-+.+.+
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~d 49 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDRD 49 (277)
T ss_pred CceEEEeecccceEEEEEEcCC
Confidence 3567999999999988777655
No 87
>PLN02362 hexokinase
Probab=55.29 E-value=9.3 Score=33.64 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCccEEEEEEeC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~ 48 (146)
.+..++||||.||..|+.++=
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L 114 (509)
T PLN02362 94 IGTYYALDLGGTNFRVLRVQL 114 (509)
T ss_pred ceeEEEEecCCceEEEEEEEe
Confidence 567899999999999999863
No 88
>PLN02914 hexokinase
Probab=52.41 E-value=9.1 Score=33.56 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCccEEEEEEeC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~ 48 (146)
.+..++||||.||..|+.++=
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L 114 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQL 114 (490)
T ss_pred eeEEEEEecCCceEEEEEEEe
Confidence 457999999999999999863
No 89
>KOG2517|consensus
Probab=52.32 E-value=14 Score=32.58 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=17.6
Q ss_pred CcEEEEEcCCccEEEEEEeC
Q psy351 29 IAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~ 48 (146)
..++|||.|||.++.++++.
T Consensus 6 ~~~~gIDvGTtSaR~~v~~~ 25 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFNA 25 (516)
T ss_pred ceEEEEEcCCCceEEEEEec
Confidence 45789999999999999983
No 90
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=52.11 E-value=18 Score=27.49 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=16.0
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
++-||.|+|++++++++++
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 4679999999999999877
No 91
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=51.92 E-value=11 Score=26.85 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.6
Q ss_pred EEEEcCCccEEEEEEeCC
Q psy351 32 MSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 32 iGIDlGTtns~va~~~~~ 49 (146)
+|||+|+..+-+|+.++.
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 589999999999987664
No 92
>PRK12408 glucokinase; Provisional
Probab=51.82 E-value=12 Score=30.84 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=17.3
Q ss_pred cEEEEEcCCccEEEEEEeC
Q psy351 30 AVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~ 48 (146)
.++|+|+|.||+..++++.
T Consensus 17 ~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCA 35 (336)
T ss_pred cEEEEEcChhhhheeEEec
Confidence 4899999999999999974
No 93
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=51.26 E-value=34 Score=23.96 Aligned_cols=19 Identities=16% Similarity=0.513 Sum_probs=17.3
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
++|||+|.....+++.+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~ 19 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPN 19 (144)
T ss_pred eEEEEcccCeEEEEEEcCC
Confidence 5899999999999999877
No 94
>PLN02405 hexokinase
Probab=49.95 E-value=11 Score=33.13 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=31.7
Q ss_pred cCCcEEEEEcCCccEEEEEEeCCC-ceEEEecCCCCcceeEEEEEcCCeeeecHhHHH
Q psy351 27 YGIAVMSVDLGSEWMKVAIVSPGV-PMEIALNKESKRKTPTLVAFHKGERTFGEDAQI 83 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~~~~-~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~ 83 (146)
.++..++||||.||..|..+.=+. .-.++.....+..+|.-+.-...+.+++.-|..
T Consensus 93 E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~ 150 (497)
T PLN02405 93 EKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAA 150 (497)
T ss_pred cceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHH
Confidence 356789999999999999886331 111222122234455544433334455555543
No 95
>PTZ00466 actin-like protein; Provisional
Probab=49.77 E-value=26 Score=29.39 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=17.2
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
...|-||.|+.++++......
T Consensus 12 ~~~iViD~GS~~~K~G~ag~~ 32 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGED 32 (380)
T ss_pred CCeEEEECCCCcEEEeeCCCC
Confidence 456889999999999887544
No 96
>PTZ00281 actin; Provisional
Probab=47.60 E-value=31 Score=28.74 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.4
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
...+-||+|+.++++.+....
T Consensus 6 ~~~vViD~Gs~~~k~G~age~ 26 (376)
T PTZ00281 6 VQALVIDNGSGMCKAGFAGDD 26 (376)
T ss_pred CCeEEEECCCCeEEEeeCCCC
Confidence 357899999999999987555
No 97
>PTZ00288 glucokinase 1; Provisional
Probab=47.53 E-value=21 Score=30.44 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.2
Q ss_pred cCCcEEEEEcCCccEEEEEEeC
Q psy351 27 YGIAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~~ 48 (146)
....++|+|.|.||+.+++.+.
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred cCCeEEEEEecCCceEEEEEec
Confidence 4567999999999999999975
No 98
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=47.13 E-value=18 Score=31.00 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=15.8
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
.-++||+|||+..+++++-.
T Consensus 2 ~GiAvDiGTTti~~~L~dl~ 21 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLE 21 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETT
T ss_pred EEEEEEcchhheeeEEEECC
Confidence 35799999999999998754
No 99
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=46.54 E-value=36 Score=28.85 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=19.7
Q ss_pred CcEEEEEcCCccEEEEEEe--CCCceEEEe
Q psy351 29 IAVMSVDLGSEWMKVAIVS--PGVPMEIAL 56 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~--~~~~~~iv~ 56 (146)
..++|||+||+..++.+.. +.+.++++-
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~~~~~i~g 37 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPDGMVNIIG 37 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCCCCEEEEE
Confidence 4688999999999977654 222566653
No 100
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=46.35 E-value=39 Score=24.78 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.5
Q ss_pred CcEEEEEcCCccEEEEEEeC
Q psy351 29 IAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~ 48 (146)
|.+++||.|+-|...++.+.
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 46899999999999988874
No 101
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=46.30 E-value=24 Score=27.70 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.3
Q ss_pred EEEEcCCccEEEEEEeCC
Q psy351 32 MSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 32 iGIDlGTtns~va~~~~~ 49 (146)
+|||-|.|.+.+.+.+.+
T Consensus 1 lGIDgGgTkt~~vl~d~~ 18 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDEN 18 (271)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred CEEeeChheeeeEEEeCC
Confidence 799999999999988865
No 102
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=46.09 E-value=22 Score=27.78 Aligned_cols=20 Identities=10% Similarity=0.318 Sum_probs=17.3
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
+++|||+|.|++.+++++..
T Consensus 1 ~~lgidiggt~i~~~l~d~~ 20 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDEN 20 (256)
T ss_pred CEEEEEECCCcEEEEEECCC
Confidence 36999999999999999744
No 103
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=45.57 E-value=37 Score=27.49 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=17.2
Q ss_pred CcEEEEEcCCccEEEEEEeC
Q psy351 29 IAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~ 48 (146)
..++|||+|++..+++....
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~ 22 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKR 22 (348)
T ss_pred CcEEEEEeccCeEEEEEEEe
Confidence 36899999999999988863
No 104
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=45.01 E-value=25 Score=26.33 Aligned_cols=18 Identities=11% Similarity=0.516 Sum_probs=16.2
Q ss_pred EEEEcCCccEEEEEEeCC
Q psy351 32 MSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 32 iGIDlGTtns~va~~~~~ 49 (146)
||||.|.||+=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999998888776
No 105
>PLN02596 hexokinase-like
Probab=44.53 E-value=15 Score=32.21 Aligned_cols=21 Identities=5% Similarity=-0.130 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCccEEEEEEeC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~ 48 (146)
.+..+.||||.||..|+.++=
T Consensus 95 ~G~yLAlDlGGTNfRV~~V~L 115 (490)
T PLN02596 95 KGLYYGLNLRGSNFLLLRARL 115 (490)
T ss_pred ceEEEEEeeCCceEEEEEEEE
Confidence 467899999999999999863
No 106
>PTZ00107 hexokinase; Provisional
Probab=44.40 E-value=24 Score=30.74 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=18.9
Q ss_pred cCCcEEEEEcCCccEEEEEEeC
Q psy351 27 YGIAVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~~ 48 (146)
..+..+.||||.||..|+.+.=
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L 93 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSL 93 (464)
T ss_pred ccceEEEEecCCceEEEEEEEe
Confidence 3567899999999999999863
No 107
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=44.33 E-value=28 Score=28.38 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=15.7
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
-|+||-|++|.++|+..+|
T Consensus 2 ~i~iDdG~~~~K~~~~~~~ 20 (318)
T PF06406_consen 2 KIAIDDGSTNVKLAWYEDG 20 (318)
T ss_dssp EEEEEE-SSEEEEEEE-SS
T ss_pred eEEEecCCCceeEEEecCC
Confidence 4899999999999999877
No 108
>PRK13322 pantothenate kinase; Reviewed
Probab=42.15 E-value=30 Score=27.31 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=16.6
Q ss_pred EEEEEcCCccEEEEEEeC
Q psy351 31 VMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~ 48 (146)
.+-||.|+|+++++++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 678999999999999986
No 109
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=42.03 E-value=31 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
.+.++.||.||||..+-+++..
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~d 25 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGD 25 (306)
T ss_pred CceEEEEecCCccEEEEEEcCC
Confidence 5789999999999999888654
No 110
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=39.33 E-value=33 Score=27.43 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=19.8
Q ss_pred cCCcEEEEEcCCccEEEEEEeCC
Q psy351 27 YGIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~~~ 49 (146)
..+.++|||+|.|++.+++.+..
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~ 26 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLD 26 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCC
Confidence 35689999999999999999764
No 111
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.12 E-value=38 Score=27.64 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCccEEEEEEeCCCce
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPGVPM 52 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~~~~ 52 (146)
.+..+|||=|||-...|++++.+.+
T Consensus 2 ~m~fVGiDHGTsgi~~ai~d~e~~~ 26 (332)
T COG4020 2 TMMFVGIDHGTSGIKFAIYDGEKDP 26 (332)
T ss_pred ceEEEeecCCCcceEEEEEcCCCCc
Confidence 4678999999999999999866333
No 112
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=38.50 E-value=35 Score=27.67 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=16.3
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
.+|||.|.|.+++++.+.+
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~ 20 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPK 20 (279)
T ss_pred eEEEEeCcceEEEEEEcCC
Confidence 5899999999999988544
No 113
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=37.68 E-value=63 Score=26.56 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC-----eeeecHhHHH
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----ERTFGEDAQI 83 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~-----~~~vG~~A~~ 83 (146)
...++-||+|+.++++.+.... .+. ..+||++.-... ...+|.++..
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~-~P~--------~v~ps~~~~~~~~~~~~~~~~g~~~~~ 54 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGED-LPR--------VVIPSVVGRPRDKNSSNDYYVGDEALS 54 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSS-S-S--------EEEESEEEEESSSSSSSSCEETHHHHH
T ss_pred CCCEEEEECCCceEEEEECCCC-CCC--------CcCCCccccccccccceeEEeeccccc
Confidence 4678999999999999875433 222 235777765322 4578888544
No 114
>PLN03207 stomagen; Provisional
Probab=37.28 E-value=41 Score=23.31 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHhhhcccCCcEEEEEcC
Q psy351 8 SLVTLCSSVVLLLTLFEHSYGIAVMSVDLG 37 (146)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~iGIDlG 37 (146)
-+++|++||+|..+++-.+-...+++-|.+
T Consensus 14 ~lffLl~~llla~~v~qgsr~~~~~~~~~~ 43 (113)
T PLN03207 14 TLFFLLFFLLLGAYVIQGSRNQSILPYDQS 43 (113)
T ss_pred HHHHHHHHHHHHHHHHhccccccccCcccc
Confidence 456666677777777766666666666666
No 115
>KOG2912|consensus
Probab=37.19 E-value=23 Score=29.85 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=18.0
Q ss_pred HHHHhhhcccCCcEE--EEEcCCccEEEEE
Q psy351 18 LLLTLFEHSYGIAVM--SVDLGSEWMKVAI 45 (146)
Q Consensus 18 ~~~~~~~~~~~~~~i--GIDlGTtns~va~ 45 (146)
..+++.+.-.....+ |||.||..+|+..
T Consensus 89 I~DLLss~q~~k~~i~~GiDIgtgasci~~ 118 (419)
T KOG2912|consen 89 IEDLLSSQQSDKSTIRRGIDIGTGASCIYP 118 (419)
T ss_pred HHHHhhcccCCCcceeeeeeccCchhhhHH
Confidence 344454443333444 9999999999843
No 116
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=36.67 E-value=34 Score=31.83 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=18.0
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
.++|+|+||+..-+|+++..
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 57899999999999999865
No 117
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=35.88 E-value=33 Score=30.20 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
.+.++.||-|||++.+.+++..
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~ 25 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDED 25 (499)
T ss_pred ccEEEEEecCCcceeEEEECCC
Confidence 5678999999999999888754
No 118
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=35.50 E-value=57 Score=27.80 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=14.2
Q ss_pred CcEEEEEcCCccEEEEEE
Q psy351 29 IAVMSVDLGSEWMKVAIV 46 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~ 46 (146)
-..+|||+||+.+.+-.-
T Consensus 5 ilSVGIDiGTsTTQvifS 22 (473)
T COG4819 5 ILSVGIDIGTSTTQVIFS 22 (473)
T ss_pred eeeeeeeccCceeeeeee
Confidence 356899999999987543
No 119
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=35.49 E-value=23 Score=30.90 Aligned_cols=15 Identities=40% Similarity=0.749 Sum_probs=13.1
Q ss_pred EEcCCccEEEEEEeC
Q psy351 34 VDLGSEWMKVAIVSP 48 (146)
Q Consensus 34 IDlGTtns~va~~~~ 48 (146)
+|||+|+++++.++.
T Consensus 1 ~DiGST~Tk~~a~~~ 15 (463)
T TIGR01319 1 LDFGSTWTKAAAFDI 15 (463)
T ss_pred CCccccceEEEEEec
Confidence 599999999999953
No 120
>PRK09698 D-allose kinase; Provisional
Probab=35.47 E-value=54 Score=26.01 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCccEEEEEEeCC
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~ 49 (146)
...++|||+|.|++.+++.+..
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~ 24 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAE 24 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCC
Confidence 4578999999999999999744
No 121
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=35.28 E-value=55 Score=26.53 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=29.3
Q ss_pred EEEcCCccEEEEEEeCCCceEE--EecC--CCCcce--------e---EEEEEcCCeeeecHhHHHhh
Q psy351 33 SVDLGSEWMKVAIVSPGVPMEI--ALNK--ESKRKT--------P---TLVAFHKGERTFGEDAQIIG 85 (146)
Q Consensus 33 GIDlGTtns~va~~~~~~~~~i--v~n~--~~~~~~--------P---S~V~f~~~~~~vG~~A~~~~ 85 (146)
|||.|--|++++....+..+.. .+.- .+.+.. + -.|.+.+++..||+.|....
T Consensus 1 ~iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~ 68 (320)
T TIGR03739 1 AVDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAA 68 (320)
T ss_pred CccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcc
Confidence 7999999999987644322222 1110 011111 1 23445666789999885544
No 122
>PRK09557 fructokinase; Reviewed
Probab=34.91 E-value=40 Score=26.81 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=17.3
Q ss_pred cEEEEEcCCccEEEEEEeCC
Q psy351 30 AVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~ 49 (146)
..+|||+|.|++.+++++..
T Consensus 1 ~~lgidig~t~~~~~l~d~~ 20 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDA 20 (301)
T ss_pred CEEEEEECCCcEEEEEECCC
Confidence 36899999999999999744
No 123
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=34.44 E-value=43 Score=26.47 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=18.0
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
|.++|||+|.++..+++.+-.
T Consensus 1 ~~~lgvdig~~~i~~~l~dl~ 21 (291)
T PRK05082 1 MTTLAIDIGGTKIAAALVGED 21 (291)
T ss_pred CcEEEEEECCCEEEEEEEcCC
Confidence 358999999999999998744
No 124
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=34.13 E-value=42 Score=26.68 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=16.9
Q ss_pred EEEEEcCCccEEEEEEeCC
Q psy351 31 VMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~~ 49 (146)
++|||+|.|++.+++.+..
T Consensus 2 ~lgidig~t~i~~~l~d~~ 20 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEK 20 (303)
T ss_pred eEEEEeCCCcEEEEEECCC
Confidence 6899999999999999854
No 125
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=33.91 E-value=44 Score=29.77 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.5
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
...||+|+||..-.+.+++..
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~ 23 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQ 23 (544)
T ss_pred cEEEEEeecCCceeEEEEEcC
Confidence 568999999999999999754
No 126
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=33.55 E-value=24 Score=28.81 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.1
Q ss_pred EEEcCCccEEEEEEeCC
Q psy351 33 SVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 33 GIDlGTtns~va~~~~~ 49 (146)
|||+|+.+.+++..+..
T Consensus 1 GiDiG~~siK~v~l~~~ 17 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKK 17 (340)
T ss_dssp EEEE-SSEEEEEEEETT
T ss_pred CeecCCCeEEEEEEEEc
Confidence 89999999999988754
No 127
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=32.63 E-value=89 Score=23.73 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=21.8
Q ss_pred CcEEEEEcCCcc-EEEEEEeCCCceEEEec
Q psy351 29 IAVMSVDLGSEW-MKVAIVSPGVPMEIALN 57 (146)
Q Consensus 29 ~~~iGIDlGTtn-s~va~~~~~~~~~iv~n 57 (146)
|.+.|||+|--. +++|++..+ +.+++.-
T Consensus 1 mmy~GIDla~k~~tavavl~~~-~~~~i~~ 29 (178)
T COG2410 1 MMYAGIDLAVKRSTAVAVLIEG-RIEIISA 29 (178)
T ss_pred CcccccccccCCCceEEEEECC-EEEEEEc
Confidence 457899998654 478899999 8888864
No 128
>PF01385 OrfB_IS605: Probable transposase; InterPro: IPR001959 This entry represents a conserved region of a probable transposase family, which is found in a number of uncharacterised bacterial proteins. A novel insertion sequence (IS)-like element of the Bacillus PS3 (Thermophilic bacterium PS-3) that promotes expression of the alanine carrier protein-encoding gene belongs to this entry, including IS891 [], IS1136 [], and IS1341 []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.10 E-value=27 Score=26.01 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=17.2
Q ss_pred cCCcEEEEEcCCccEEEEEEeCC
Q psy351 27 YGIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~~~ 49 (146)
....++|||+|-.+..++.-.+|
T Consensus 122 ~~~~~vgVDlGi~~~a~~~~~~~ 144 (227)
T PF01385_consen 122 DTEKVVGVDLGIKNLATVSSGDG 144 (227)
T ss_pred ccceeeeeccccceeeccccccc
Confidence 45689999999999876554443
No 129
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.25 E-value=77 Score=29.03 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.8
Q ss_pred cEEEEEcCCccEEEEEEeCCCceEEEe
Q psy351 30 AVMSVDLGSEWMKVAIVSPGVPMEIAL 56 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~~~~~~iv~ 56 (146)
.++++|-|.|.+-+|.+.+| .+++..
T Consensus 279 ~~i~~DmGGTStDva~i~~G-~pe~~~ 304 (674)
T COG0145 279 NAIVFDMGGTSTDVALIIDG-EPEISS 304 (674)
T ss_pred CEEEEEcCCcceeeeeeecC-cEEeec
Confidence 59999999999999999999 776654
No 130
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=30.25 E-value=31 Score=26.92 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=13.5
Q ss_pred EEEcCCccEEEEEEeCC
Q psy351 33 SVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 33 GIDlGTtns~va~~~~~ 49 (146)
|+|+||++.++-..+..
T Consensus 1 g~dig~~~ik~v~~~~~ 17 (239)
T TIGR02529 1 GVDLGTANIVIVVLDED 17 (239)
T ss_pred CCCcccceEEEEEEecC
Confidence 79999999997665543
No 131
>PRK00976 hypothetical protein; Provisional
Probab=29.44 E-value=83 Score=26.24 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.9
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
|..+|||=|||-...|....+
T Consensus 1 ~~~~g~dhgt~~~~~~~~~~~ 21 (326)
T PRK00976 1 MMFVGIDHGTTGIRFAIIEGG 21 (326)
T ss_pred CeEEeecCCCccEEEEEEcCC
Confidence 467999999999999998544
No 132
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=27.59 E-value=52 Score=27.24 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.7
Q ss_pred EEEEcCCccEEEEEEeCC
Q psy351 32 MSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 32 iGIDlGTtns~va~~~~~ 49 (146)
+|+|.|..|.++|..++.
T Consensus 1 ~G~DiGGA~~K~a~~~~~ 18 (318)
T TIGR03123 1 LGIDIGGANTKAAELDED 18 (318)
T ss_pred CccccccceeeeEEecCC
Confidence 699999999999988743
No 133
>PRK13328 pantothenate kinase; Reviewed
Probab=26.98 E-value=72 Score=25.33 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=17.9
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
++.+-||.|+|.+++|+.+.+
T Consensus 1 ~M~LliDiGNTriKwa~~~~~ 21 (255)
T PRK13328 1 AMILLIDAGNSRIKWAWADAG 21 (255)
T ss_pred CcEEEEEeCccceeEEEEcCC
Confidence 357889999999999998854
No 134
>PRK13329 pantothenate kinase; Reviewed
Probab=25.75 E-value=63 Score=25.59 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=16.4
Q ss_pred cEEEEEcCCccEEEEEEe
Q psy351 30 AVMSVDLGSEWMKVAIVS 47 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~ 47 (146)
+.+-||.|+|.+++++.+
T Consensus 2 m~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 2 TFLAIDVGNTRLKWGLYD 19 (249)
T ss_pred CEEEEEcCcchheeeEec
Confidence 478899999999999998
No 135
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=25.59 E-value=1.2e+02 Score=22.11 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=16.4
Q ss_pred cCCcEEEEEcCCccEEEEEEeCC
Q psy351 27 YGIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 27 ~~~~~iGIDlGTtns~va~~~~~ 49 (146)
....++|||=|||.-..++=-+|
T Consensus 30 ~~~lIVGiDPG~ttgiAildL~G 52 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTGIAILDLDG 52 (138)
T ss_pred CCCEEEEECCCceeEEEEEecCC
Confidence 44678999999998654444456
No 136
>KOG1272|consensus
Probab=25.03 E-value=42 Score=29.48 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=46.0
Q ss_pred CcchhhhhHHHHHHHHHHHHHhhhccc------------------------------CCcEEEEEcCCccEEEEEEeCCC
Q psy351 1 MLCLMKISLVTLCSSVVLLLTLFEHSY------------------------------GIAVMSVDLGSEWMKVAIVSPGV 50 (146)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~iGIDlGTtns~va~~~~~~ 50 (146)
|-||+...-+.-+.||+.+.+|.+... +..---|.+|.+|-.|+.|++.
T Consensus 203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~- 281 (545)
T KOG1272|consen 203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN- 281 (545)
T ss_pred EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC-
Confidence 358888888888888888877743311 1123458899999999999987
Q ss_pred ceEEEecCCCCcceeEEEEEcCC
Q psy351 51 PMEIALNKESKRKTPTLVAFHKG 73 (146)
Q Consensus 51 ~~~iv~n~~~~~~~PS~V~f~~~ 73 (146)
..+-+..-.-.+..-|.|+++.+
T Consensus 282 skePLvKiLcH~g~V~siAv~~~ 304 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRG 304 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCC
Confidence 22222222233444566666543
No 137
>KOG1369|consensus
Probab=24.92 E-value=84 Score=27.57 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.6
Q ss_pred ccCCcEEEEEcCCccEEEEEEeCC
Q psy351 26 SYGIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 26 ~~~~~~iGIDlGTtns~va~~~~~ 49 (146)
...+..++||||.||..|..+.=+
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~ 106 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLG 106 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEec
Confidence 345789999999999999887633
No 138
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=24.70 E-value=98 Score=24.89 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=19.9
Q ss_pred ccCCcEEEEEcCCccEEEEEEeCCCceE
Q psy351 26 SYGIAVMSVDLGSEWMKVAIVSPGVPME 53 (146)
Q Consensus 26 ~~~~~~iGIDlGTtns~va~~~~~~~~~ 53 (146)
.....+|.+|.|.|.+=|+.+.+| .+.
T Consensus 74 ~g~~~~i~vDmGGTTtDi~~i~~G-~p~ 100 (290)
T PF01968_consen 74 TGLENAIVVDMGGTTTDIALIKDG-RPE 100 (290)
T ss_dssp HT-SSEEEEEE-SS-EEEEEEETT-EE-
T ss_pred CCCCCEEEEeCCCCEEEEEEEECC-eee
Confidence 345689999999999999999998 554
No 139
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=24.40 E-value=73 Score=25.91 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=10.5
Q ss_pred EcCCccEEEEEEeCC
Q psy351 35 DLGSEWMKVAIVSPG 49 (146)
Q Consensus 35 DlGTtns~va~~~~~ 49 (146)
|.||||..+.+++++
T Consensus 1 DWGTSnlR~~l~~~~ 15 (287)
T PF05035_consen 1 DWGTSNLRAWLMDED 15 (287)
T ss_dssp EE-SS-EEEEEE-CT
T ss_pred CCchhhhhhheecCC
Confidence 899999999999654
No 140
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=23.79 E-value=62 Score=26.11 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.4
Q ss_pred EEEEcCCccEEEEEEeCC
Q psy351 32 MSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 32 iGIDlGTtns~va~~~~~ 49 (146)
+.+|+|.||+.+++++..
T Consensus 1 l~~DIGGT~i~~glvd~~ 18 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIA 18 (316)
T ss_pred CeEecCcceeeEEEEecC
Confidence 468999999999999753
No 141
>PF14239 RRXRR: RRXRR protein
Probab=23.22 E-value=1e+02 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.4
Q ss_pred ccCCcEEEEEcCCccEEEEEEeCC
Q psy351 26 SYGIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 26 ~~~~~~iGIDlGTtns~va~~~~~ 49 (146)
..+...+|||-|+.++-+|+..+.
T Consensus 48 ~~qpi~lgiDpGsk~tGiav~~~~ 71 (176)
T PF14239_consen 48 YTQPIRLGIDPGSKTTGIAVVSEK 71 (176)
T ss_pred cccCEEEEECCCCCeEEEEEEeCC
Confidence 345678999999999999998766
No 142
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=23.20 E-value=60 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.9
Q ss_pred EEEEEcCCccEEEEEEeC
Q psy351 31 VMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 31 ~iGIDlGTtns~va~~~~ 48 (146)
++|||=|+..+-.++++.
T Consensus 1 ILGIDPGl~~tG~gvi~~ 18 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQ 18 (156)
T ss_pred CEeECcccccccEEEEEe
Confidence 589999999999999863
No 143
>PRK14756 hypothetical protein; Provisional
Probab=22.85 E-value=1.1e+02 Score=16.13 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhcc
Q psy351 5 MKISLVTLCSSVVLLLTLFEHS 26 (146)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (146)
.|+++++-..-|.++.++..++
T Consensus 5 LK~SL~tTvvaL~~Iva~~~ta 26 (29)
T PRK14756 5 LKFSLVTTIIVLGLIVAVGLTA 26 (29)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888876654
No 144
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=22.71 E-value=1.1e+02 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCccEEEEEEeCCCceEE
Q psy351 28 GIAVMSVDLGSEWMKVAIVSPGVPMEI 54 (146)
Q Consensus 28 ~~~~iGIDlGTtns~va~~~~~~~~~i 54 (146)
...+|.+|.|.|.+-|+.+.+| ++.+
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G-~p~~ 152 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDG-EVAA 152 (318)
T ss_pred CCCEEEEEcCccceeeEEecCC-Eeee
Confidence 6679999999999999999988 5544
No 145
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.01 E-value=1.3e+02 Score=25.39 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.9
Q ss_pred cEEEEEcCCccEEEEEEeC
Q psy351 30 AVMSVDLGSEWMKVAIVSP 48 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~~ 48 (146)
..+|||.|++..+++..++
T Consensus 11 ~~vGIdI~~~sVKvvqLs~ 29 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSR 29 (354)
T ss_pred ceeeEeeccceEEEEEEcc
Confidence 6999999999999988873
No 146
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=21.08 E-value=1e+02 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=18.4
Q ss_pred cEEEEEcCCccEEEEEEe--CCCceEEE
Q psy351 30 AVMSVDLGSEWMKVAIVS--PGVPMEIA 55 (146)
Q Consensus 30 ~~iGIDlGTtns~va~~~--~~~~~~iv 55 (146)
.++|+|+||+..++.+.. ++..++++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~ii 34 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNII 34 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEE
Confidence 689999999999876553 33235554
No 147
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=21.07 E-value=1.1e+02 Score=27.53 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.0
Q ss_pred ccCCcEEEEEcCCccEEEEEEeCC
Q psy351 26 SYGIAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 26 ~~~~~~iGIDlGTtns~va~~~~~ 49 (146)
..+++.+-||.|+|.+++|+.+.+
T Consensus 335 ~~~~~~LliD~GNTriKwa~~~~~ 358 (592)
T PRK13325 335 RDSERFLLLDGGNSRLKWAWVENG 358 (592)
T ss_pred CCCceEEEEEcCcCceeEEEEcCC
Confidence 356789999999999999998866
No 148
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.79 E-value=57 Score=27.94 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=10.1
Q ss_pred CcEEEEEcCCcc
Q psy351 29 IAVMSVDLGSEW 40 (146)
Q Consensus 29 ~~~iGIDlGTtn 40 (146)
..++.||||||=
T Consensus 193 NPciSiDFGTTL 204 (445)
T TIGR03285 193 NPCISIDFGTTL 204 (445)
T ss_pred CceEEeeccccc
Confidence 468999999984
No 149
>PRK03011 butyrate kinase; Provisional
Probab=20.32 E-value=1.3e+02 Score=25.09 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.8
Q ss_pred CcEEEEEcCCccEEEEEEeCC
Q psy351 29 IAVMSVDLGSEWMKVAIVSPG 49 (146)
Q Consensus 29 ~~~iGIDlGTtns~va~~~~~ 49 (146)
+.++.|.-|+|.+++|++++.
T Consensus 2 ~~il~inpgststk~a~~~~~ 22 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDE 22 (358)
T ss_pred CEEEEEcCCCchheEEEEcCC
Confidence 468899999999999999876
Done!