RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy351
         (146 letters)



>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 185

 Score = 82.0 bits (202), Expect = 5e-21
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLGS +  V +   G   EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 3   AVGIDLGSTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61

Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
           N+      L+G+  D  VVQ     +P+  +         V    + + ++ EE+ 
Sbjct: 62  NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 117


>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
           fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 183

 Score = 68.9 bits (168), Expect = 4e-16
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 89
           ++ +DLG+    VAI+    P  +  N E  R TP+++A+ + GE   G+ A+      P
Sbjct: 2   IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60

Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
            N+      L+G+      VQ   S  P+   +   + G    +    +     ++ 
Sbjct: 61  QNTLFAIKRLIGRRFQDEEVQRDVSIMPFK--IIAADNGDAWVEVKGQK-MAPPQIS 114


>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA
           {Borrelia burgdorferi [TaxId: 139]}
          Length = 322

 Score = 25.2 bits (55), Expect = 3.5
 Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 20/61 (32%)

Query: 66  TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 125
           ++     G+    +    I +                  DSP V    ++    D+  D+
Sbjct: 71  SVAFAIIGKNPIEDGMNFIVSH----------------TDSPRVPAGTAK----DVGFDK 110

Query: 126 E 126
            
Sbjct: 111 A 111


>d2ciwa2 a.39.3.1 (A:120-298) Cloroperoxidase {Fungus (Caldariomyces
           fumago) [TaxId: 5474]}
          Length = 179

 Score = 24.4 bits (52), Expect = 5.9
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 6   KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 65
           +I  VT  SS VL  ++      +   ++  G+E + ++  S   P  +A N     + P
Sbjct: 114 EIEFVTSASSAVLAASVTSTPSSLPSGAIGPGAEAVPLSFASTMTPFLLATNAPYYAQDP 173

Query: 66  TL 67
           TL
Sbjct: 174 TL 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 527,539
Number of extensions: 22203
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 14
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)