Query psy3510
Match_columns 64
No_of_seqs 159 out of 1142
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 18:31:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 99.7 1.5E-17 3.2E-22 100.0 6.7 61 1-62 36-97 (339)
2 PF08240 ADH_N: Alcohol dehydr 99.7 2E-17 4.3E-22 85.7 5.6 56 1-56 9-64 (109)
3 COG0604 Qor NADPH:quinone redu 99.7 2.2E-16 4.9E-21 94.6 6.3 64 1-64 35-99 (326)
4 COG1062 AdhC Zn-dependent alco 99.6 6.6E-16 1.4E-20 92.8 5.1 60 1-62 35-94 (366)
5 KOG1197|consensus 99.6 1.2E-15 2.6E-20 89.4 5.4 61 1-64 43-103 (336)
6 KOG0023|consensus 99.6 1.6E-15 3.6E-20 90.6 5.5 54 1-55 44-97 (360)
7 TIGR02819 fdhA_non_GSH formald 99.6 1.6E-14 3.4E-19 88.2 7.0 53 1-55 41-93 (393)
8 KOG0025|consensus 99.6 1.1E-14 2.4E-19 86.4 5.8 63 1-64 55-117 (354)
9 PLN02740 Alcohol dehydrogenase 99.5 1E-13 2.2E-18 83.9 6.9 61 1-61 43-103 (381)
10 KOG0022|consensus 99.5 3.6E-14 7.8E-19 84.9 4.0 61 1-62 40-100 (375)
11 TIGR02818 adh_III_F_hyde S-(hy 99.4 6.8E-13 1.5E-17 80.1 6.8 59 1-60 34-92 (368)
12 PLN02586 probable cinnamyl alc 99.4 7.9E-13 1.7E-17 79.8 6.4 52 1-53 45-96 (360)
13 TIGR01202 bchC 2-desacetyl-2-h 99.4 8.1E-13 1.7E-17 78.2 6.2 63 1-64 33-105 (308)
14 cd08300 alcohol_DH_class_III c 99.4 1.1E-12 2.3E-17 79.1 6.7 59 1-60 35-93 (368)
15 cd08237 ribitol-5-phosphate_DH 99.4 5.8E-13 1.3E-17 79.7 5.5 53 1-55 33-88 (341)
16 cd08230 glucose_DH Glucose deh 99.4 8.6E-13 1.9E-17 79.1 6.1 54 1-55 33-88 (355)
17 cd08281 liver_ADH_like1 Zinc-d 99.4 1.2E-12 2.5E-17 79.0 6.4 53 1-55 41-93 (371)
18 cd08291 ETR_like_1 2-enoyl thi 99.4 1.5E-12 3.3E-17 77.0 6.5 63 1-64 38-101 (324)
19 cd08301 alcohol_DH_plants Plan 99.4 1.6E-12 3.4E-17 78.3 6.5 59 1-60 35-93 (369)
20 PLN02178 cinnamyl-alcohol dehy 99.4 2E-12 4.2E-17 78.6 6.8 52 1-53 39-90 (375)
21 TIGR03451 mycoS_dep_FDH mycoth 99.4 2.2E-12 4.7E-17 77.5 6.8 53 1-55 34-86 (358)
22 cd08239 THR_DH_like L-threonin 99.4 2.2E-12 4.9E-17 76.6 6.5 55 1-55 32-86 (339)
23 COG1063 Tdh Threonine dehydrog 99.4 2.3E-12 4.9E-17 77.9 6.1 59 1-61 33-92 (350)
24 KOG0024|consensus 99.3 6.7E-13 1.5E-17 79.6 3.0 57 1-57 37-95 (354)
25 cd08277 liver_alcohol_DH_like 99.3 5.7E-12 1.2E-16 75.9 6.8 54 1-56 35-88 (365)
26 TIGR02822 adh_fam_2 zinc-bindi 99.3 6.6E-12 1.4E-16 75.0 6.7 52 1-53 35-86 (329)
27 PRK09880 L-idonate 5-dehydroge 99.3 6.8E-12 1.5E-16 75.0 6.0 52 1-54 35-88 (343)
28 cd08292 ETR_like_2 2-enoyl thi 99.3 1.2E-11 2.5E-16 72.8 6.5 61 1-63 36-96 (324)
29 PLN02827 Alcohol dehydrogenase 99.3 1E-11 2.2E-16 75.4 6.4 56 1-60 45-100 (378)
30 PLN02514 cinnamyl-alcohol dehy 99.3 1.8E-11 4E-16 73.7 6.6 52 1-53 42-93 (357)
31 cd08238 sorbose_phosphate_red 99.3 1.4E-11 3E-16 75.4 5.6 55 1-55 34-95 (410)
32 TIGR02817 adh_fam_1 zinc-bindi 99.3 3.3E-11 7.1E-16 71.3 6.8 63 1-64 37-100 (336)
33 cd05188 MDR Medium chain reduc 99.2 6.1E-11 1.3E-15 67.7 6.3 56 1-56 7-62 (271)
34 PRK10083 putative oxidoreducta 99.2 5.6E-11 1.2E-15 70.6 6.3 53 1-54 32-84 (339)
35 cd08251 polyketide_synthase po 99.2 9.5E-11 2.1E-15 67.9 7.0 62 2-63 16-77 (303)
36 TIGR03201 dearomat_had 6-hydro 99.2 6.6E-11 1.4E-15 71.0 6.4 53 1-54 31-83 (349)
37 cd08231 MDR_TM0436_like Hypoth 99.2 7.8E-11 1.7E-15 70.6 6.0 54 1-55 33-92 (361)
38 PRK10309 galactitol-1-phosphat 99.2 1.3E-10 2.7E-15 69.5 6.9 53 1-55 33-85 (347)
39 cd08250 Mgc45594_like Mgc45594 99.2 1.4E-10 3.1E-15 68.4 6.8 56 1-56 38-93 (329)
40 cd08299 alcohol_DH_class_I_II_ 99.2 9.3E-11 2E-15 71.0 6.0 54 1-56 40-93 (373)
41 cd05278 FDH_like Formaldehyde 99.2 9.5E-11 2.1E-15 69.6 5.9 53 1-54 33-85 (347)
42 cd08283 FDH_like_1 Glutathione 99.2 1.4E-10 3.1E-15 70.5 6.6 55 1-56 33-87 (386)
43 cd08290 ETR 2-enoyl thioester 99.2 1.4E-10 3.1E-15 68.8 6.4 61 2-63 38-102 (341)
44 cd08293 PTGR2 Prostaglandin re 99.2 1.1E-10 2.3E-15 69.5 5.7 54 1-54 44-99 (345)
45 cd05284 arabinose_DH_like D-ar 99.1 1.9E-10 4.1E-15 68.2 6.5 55 1-55 33-89 (340)
46 cd08285 NADP_ADH NADP(H)-depen 99.1 1.8E-10 3.9E-15 68.9 6.3 54 1-55 32-85 (351)
47 cd08274 MDR9 Medium chain dehy 99.1 2.3E-10 5E-15 68.0 6.5 53 2-54 37-108 (350)
48 cd08273 MDR8 Medium chain dehy 99.1 3.9E-10 8.5E-15 66.5 6.8 55 2-56 36-90 (331)
49 PTZ00354 alcohol dehydrogenase 99.1 4.2E-10 9.1E-15 66.3 6.8 60 2-63 37-96 (334)
50 cd08233 butanediol_DH_like (2R 99.1 3.1E-10 6.7E-15 67.9 6.2 55 1-55 32-96 (351)
51 cd08235 iditol_2_DH_like L-idi 99.1 3.2E-10 6.9E-15 67.4 5.9 54 1-55 32-85 (343)
52 cd08282 PFDH_like Pseudomonas 99.1 6E-10 1.3E-14 67.4 7.1 52 1-54 33-84 (375)
53 cd08278 benzyl_alcohol_DH Benz 99.1 2.4E-10 5.2E-15 68.9 5.4 51 1-53 35-85 (365)
54 cd05282 ETR_like 2-enoyl thioe 99.1 4.5E-10 9.7E-15 66.0 6.3 55 1-55 34-88 (323)
55 smart00829 PKS_ER Enoylreducta 99.1 4.4E-10 9.4E-15 64.4 6.0 56 1-63 5-60 (288)
56 cd05276 p53_inducible_oxidored 99.1 6.1E-10 1.3E-14 64.7 6.6 61 1-63 35-95 (323)
57 cd08286 FDH_like_ADH2 formalde 99.1 5.8E-10 1.3E-14 66.4 6.4 54 1-55 33-86 (345)
58 cd08259 Zn_ADH5 Alcohol dehydr 99.1 5.1E-10 1.1E-14 65.8 6.1 54 1-55 33-86 (332)
59 cd05279 Zn_ADH1 Liver alcohol 99.1 5E-10 1.1E-14 67.5 6.1 53 1-55 33-85 (365)
60 cd08287 FDH_like_ADH3 formalde 99.1 4.3E-10 9.3E-15 66.9 5.7 51 1-53 33-83 (345)
61 cd05195 enoyl_red enoyl reduct 99.1 6.9E-10 1.5E-14 63.5 6.4 56 2-63 9-64 (293)
62 cd08253 zeta_crystallin Zeta-c 99.1 5.4E-10 1.2E-14 65.1 6.0 55 1-55 35-89 (325)
63 cd08244 MDR_enoyl_red Possible 99.1 8E-10 1.7E-14 64.9 6.5 62 2-63 36-99 (324)
64 cd08236 sugar_DH NAD(P)-depend 99.1 6.9E-10 1.5E-14 66.0 6.2 52 1-54 32-83 (343)
65 cd08279 Zn_ADH_class_III Class 99.1 8.7E-10 1.9E-14 66.4 6.5 54 1-56 33-86 (363)
66 cd08296 CAD_like Cinnamyl alco 99.1 9.8E-10 2.1E-14 65.4 6.7 53 1-54 33-85 (333)
67 cd08256 Zn_ADH2 Alcohol dehydr 99.0 9.2E-10 2E-14 65.8 6.4 54 1-54 32-95 (350)
68 PRK05396 tdh L-threonine 3-deh 99.0 8.3E-10 1.8E-14 65.7 6.1 54 1-54 33-88 (341)
69 cd08240 6_hydroxyhexanoate_dh_ 99.0 9.9E-10 2.2E-14 65.6 6.4 55 1-55 33-98 (350)
70 cd08262 Zn_ADH8 Alcohol dehydr 99.0 7.3E-10 1.6E-14 65.8 5.8 55 1-55 31-96 (341)
71 cd08265 Zn_ADH3 Alcohol dehydr 99.0 1.4E-09 2.9E-14 66.1 7.0 53 1-53 59-117 (384)
72 cd08234 threonine_DH_like L-th 99.0 1.2E-09 2.5E-14 64.7 6.6 51 1-53 32-82 (334)
73 cd08247 AST1_like AST1 is a cy 99.0 8.4E-10 1.8E-14 66.0 5.8 55 1-55 36-91 (352)
74 cd08248 RTN4I1 Human Reticulon 99.0 1.1E-09 2.3E-14 65.2 6.2 63 1-63 37-114 (350)
75 cd08261 Zn_ADH7 Alcohol dehydr 99.0 1E-09 2.2E-14 65.2 6.0 53 1-54 32-84 (337)
76 cd05283 CAD1 Cinnamyl alcohol 99.0 1.1E-09 2.4E-14 65.2 6.2 52 1-53 32-83 (337)
77 cd08254 hydroxyacyl_CoA_DH 6-h 99.0 1.8E-09 3.9E-14 63.7 6.8 53 1-53 34-86 (338)
78 cd08276 MDR7 Medium chain dehy 99.0 1.8E-09 4E-14 63.5 6.7 54 2-55 36-89 (336)
79 cd08269 Zn_ADH9 Alcohol dehydr 99.0 1.2E-09 2.6E-14 63.9 5.8 60 1-63 27-88 (312)
80 cd08263 Zn_ADH10 Alcohol dehyd 99.0 1.2E-09 2.7E-14 65.8 5.9 52 1-54 33-87 (367)
81 PLN02702 L-idonate 5-dehydroge 99.0 2.2E-09 4.8E-14 64.6 7.0 54 1-54 49-104 (364)
82 cd08266 Zn_ADH_like1 Alcohol d 99.0 2.1E-09 4.5E-14 63.1 6.7 54 2-55 36-89 (342)
83 TIGR00692 tdh L-threonine 3-de 99.0 1.7E-09 3.6E-14 64.5 6.3 54 1-54 31-86 (340)
84 cd08275 MDR3 Medium chain dehy 99.0 2.7E-09 5.8E-14 62.8 6.9 55 2-56 35-89 (337)
85 cd08284 FDH_like_2 Glutathione 99.0 1.5E-09 3.2E-14 64.5 5.8 53 1-55 33-85 (344)
86 PRK13771 putative alcohol dehy 99.0 2.2E-09 4.8E-14 63.6 6.5 54 1-55 33-86 (334)
87 PRK10754 quinone oxidoreductas 99.0 2.5E-09 5.3E-14 63.2 6.5 60 2-63 37-96 (327)
88 cd08252 AL_MDR Arginate lyase 99.0 3.1E-09 6.7E-14 62.9 6.7 61 2-63 39-100 (336)
89 cd08270 MDR4 Medium chain dehy 99.0 2.6E-09 5.6E-14 62.4 6.2 56 1-63 34-89 (305)
90 cd08272 MDR6 Medium chain dehy 99.0 3.3E-09 7.2E-14 61.9 6.6 55 1-55 35-89 (326)
91 cd08260 Zn_ADH6 Alcohol dehydr 99.0 3.5E-09 7.6E-14 63.1 6.6 52 1-53 33-84 (345)
92 cd05280 MDR_yhdh_yhfp Yhdh and 99.0 3.1E-09 6.7E-14 62.5 6.1 53 1-55 35-87 (325)
93 TIGR02824 quinone_pig3 putativ 98.9 5.2E-09 1.1E-13 61.0 6.7 55 2-56 36-90 (325)
94 cd08232 idonate-5-DH L-idonate 98.9 3.8E-09 8.2E-14 62.8 6.2 54 1-54 29-84 (339)
95 cd08264 Zn_ADH_like2 Alcohol d 98.9 6.2E-09 1.3E-13 61.5 7.0 52 2-55 35-86 (325)
96 PRK09422 ethanol-active dehydr 98.9 3.9E-09 8.4E-14 62.6 6.0 51 1-53 33-83 (338)
97 cd08297 CAD3 Cinnamyl alcohol 98.9 5E-09 1.1E-13 62.3 6.5 53 2-54 35-87 (341)
98 cd08258 Zn_ADH4 Alcohol dehydr 98.9 4.7E-09 1E-13 62.1 6.2 54 1-55 34-87 (306)
99 cd08268 MDR2 Medium chain dehy 98.9 3.8E-09 8.3E-14 61.6 5.7 54 2-55 36-89 (328)
100 cd05286 QOR2 Quinone oxidoredu 98.9 7.2E-09 1.6E-13 60.1 6.5 52 2-55 35-86 (320)
101 cd08298 CAD2 Cinnamyl alcohol 98.9 6.8E-09 1.5E-13 61.4 6.2 53 1-54 37-89 (329)
102 PLN03154 putative allyl alcoho 98.9 6.2E-09 1.3E-13 62.7 5.6 53 1-54 51-105 (348)
103 cd08245 CAD Cinnamyl alcohol d 98.9 1.1E-08 2.4E-13 60.5 6.5 52 1-53 32-83 (330)
104 TIGR02823 oxido_YhdH putative 98.9 1E-08 2.3E-13 60.4 6.1 53 1-55 34-86 (323)
105 TIGR03366 HpnZ_proposed putati 98.9 4.8E-09 1E-13 61.4 4.4 31 26-56 1-37 (280)
106 cd08249 enoyl_reductase_like e 98.8 6.4E-09 1.4E-13 62.1 4.8 54 1-56 34-87 (339)
107 cd08241 QOR1 Quinone oxidoredu 98.8 1.9E-08 4.1E-13 58.5 6.5 54 2-55 36-89 (323)
108 cd05281 TDH Threonine dehydrog 98.8 1.6E-08 3.5E-13 60.3 6.0 53 2-54 34-88 (341)
109 cd08295 double_bond_reductase_ 98.8 1.9E-08 4.1E-13 60.0 6.2 54 1-54 45-100 (338)
110 cd08288 MDR_yhdh Yhdh putative 98.8 2.7E-08 6E-13 58.6 6.4 53 1-55 35-87 (324)
111 cd08243 quinone_oxidoreductase 98.8 4E-08 8.6E-13 57.5 6.9 52 1-55 35-86 (320)
112 cd05289 MDR_like_2 alcohol deh 98.8 3.3E-08 7.1E-13 57.3 6.4 54 2-55 36-91 (309)
113 cd05285 sorbitol_DH Sorbitol d 98.8 2.6E-08 5.7E-13 59.5 6.0 53 1-53 30-84 (343)
114 cd08246 crotonyl_coA_red croto 98.8 3.2E-08 6.9E-13 60.2 6.4 55 1-55 50-113 (393)
115 cd08267 MDR1 Medium chain dehy 98.8 4.1E-08 8.8E-13 57.4 6.2 54 2-55 35-90 (319)
116 cd08242 MDR_like Medium chain 98.8 3.1E-08 6.8E-13 58.4 5.8 47 1-54 32-78 (319)
117 cd08289 MDR_yhfp_like Yhfp put 98.8 3.5E-08 7.6E-13 58.2 5.9 62 1-64 35-100 (326)
118 cd08271 MDR5 Medium chain dehy 98.8 5E-08 1.1E-12 57.2 6.5 53 2-55 36-88 (325)
119 TIGR01751 crot-CoA-red crotony 98.6 2.2E-07 4.8E-12 56.8 6.4 55 1-55 45-109 (398)
120 cd08255 2-desacetyl-2-hydroxye 98.4 8.2E-07 1.8E-11 51.5 4.8 34 22-55 19-52 (277)
121 TIGR02825 B4_12hDH leukotriene 98.3 1.5E-06 3.2E-11 51.6 5.2 47 1-54 39-85 (325)
122 cd08294 leukotriene_B4_DH_like 98.2 3.1E-06 6.7E-11 50.0 4.4 47 1-54 41-87 (329)
123 cd05288 PGDH Prostaglandin deh 98.1 1.7E-05 3.8E-10 46.8 5.6 53 1-55 40-94 (329)
124 KOG1198|consensus 97.9 3E-05 6.5E-10 47.4 4.6 61 2-64 41-108 (347)
125 cd00320 cpn10 Chaperonin 10 Kd 94.2 0.1 2.3E-06 26.5 3.3 25 31-55 35-68 (93)
126 PTZ00414 10 kDa heat shock pro 93.5 0.17 3.6E-06 26.2 3.3 25 31-55 45-73 (100)
127 PRK00364 groES co-chaperonin G 93.1 0.15 3.3E-06 26.0 2.8 25 31-55 36-69 (95)
128 KOG1202|consensus 93.1 0.096 2.1E-06 37.9 2.6 45 2-56 1453-1503(2376)
129 PRK14533 groES co-chaperonin G 91.8 0.4 8.8E-06 24.3 3.3 25 31-55 36-64 (91)
130 PF00166 Cpn10: Chaperonin 10 90.8 0.24 5.1E-06 25.1 1.9 26 31-56 35-69 (93)
131 COG0234 GroS Co-chaperonin Gro 90.2 0.54 1.2E-05 24.2 2.9 25 32-56 37-70 (96)
132 COG2130 Putative NADP-dependen 89.4 0.57 1.2E-05 29.0 3.0 34 23-56 67-102 (340)
133 cd06919 Asp_decarbox Aspartate 83.7 0.95 2.1E-05 23.9 1.6 32 25-56 58-89 (111)
134 TIGR00223 panD L-aspartate-alp 81.8 1.2 2.7E-05 24.0 1.7 32 25-56 59-90 (126)
135 PRK05449 aspartate alpha-decar 80.6 1.4 3E-05 23.8 1.6 32 25-56 59-90 (126)
136 PF02261 Asp_decarbox: Asparta 80.3 0.79 1.7E-05 24.4 0.6 32 25-56 59-90 (116)
137 KOG1641|consensus 77.9 4.9 0.00011 21.0 3.1 28 28-55 41-77 (104)
138 PF15057 DUF4537: Domain of un 68.7 10 0.00023 20.1 3.1 20 37-56 47-67 (124)
139 COG0853 PanD Aspartate 1-decar 68.5 4 8.7E-05 22.0 1.5 32 25-56 58-89 (126)
140 KOG1196|consensus 66.0 13 0.00028 23.3 3.4 25 30-56 78-102 (343)
141 KOG0544|consensus 65.7 13 0.00028 19.4 2.9 23 34-56 6-28 (108)
142 PF04319 NifZ: NifZ domain; I 62.2 10 0.00022 18.7 2.1 19 44-62 4-23 (75)
143 PF10844 DUF2577: Protein of u 57.2 10 0.00023 19.3 1.8 13 44-56 76-88 (100)
144 PF00278 Orn_DAP_Arg_deC: Pyri 57.2 12 0.00026 18.9 2.0 17 44-63 82-98 (116)
145 PF14031 D-ser_dehydrat: Putat 56.3 18 0.00038 18.3 2.5 15 42-56 64-78 (94)
146 PF10377 ATG11: Autophagy-rela 52.8 12 0.00027 20.1 1.6 16 42-57 40-55 (129)
147 PF11017 DUF2855: Protein of u 52.3 27 0.00059 21.8 3.2 33 22-57 29-61 (314)
148 cd05834 HDGF_related The PWWP 50.8 14 0.00031 18.2 1.6 13 44-56 2-14 (83)
149 PF11132 SplA: Transcriptional 50.7 17 0.00037 17.8 1.8 15 43-57 4-18 (75)
150 smart00743 Agenet Tudor-like d 47.4 22 0.00047 16.0 1.9 13 44-56 2-14 (61)
151 PF10077 DUF2314: Uncharacteri 45.1 50 0.0011 17.8 3.3 29 27-55 62-90 (133)
152 PF10417 1-cysPrx_C: C-termina 45.0 12 0.00025 16.0 0.7 14 43-56 14-27 (40)
153 PF01455 HupF_HypC: HupF/HypC 43.8 25 0.00055 16.7 1.8 15 42-56 35-49 (68)
154 PRK06763 F0F1 ATP synthase sub 43.3 36 0.00078 20.1 2.6 13 43-55 73-85 (213)
155 PRK02290 3-dehydroquinate synt 42.9 17 0.00036 23.0 1.3 16 41-56 312-327 (344)
156 PF01959 DHQS: 3-dehydroquinat 42.8 18 0.00038 23.0 1.4 17 41-57 322-338 (354)
157 PF03459 TOBE: TOBE domain; I 42.6 22 0.00048 16.0 1.5 13 44-56 46-58 (64)
158 PF13403 Hint_2: Hint domain 42.3 19 0.00042 19.6 1.4 14 42-55 18-31 (147)
159 TIGR00739 yajC preprotein tran 42.0 16 0.00034 18.2 1.0 14 43-56 36-49 (84)
160 PF14801 GCD14_N: tRNA methylt 38.3 19 0.00042 16.6 0.9 13 44-56 5-17 (54)
161 TIGR00074 hypC_hupF hydrogenas 37.6 35 0.00077 16.7 1.8 14 43-56 34-47 (76)
162 CHL00141 rpl24 ribosomal prote 37.5 42 0.00091 16.7 2.1 13 44-56 8-20 (83)
163 PF01079 Hint: Hint module; I 36.7 21 0.00045 20.9 1.1 15 42-56 29-43 (217)
164 cd04495 BRCA2DBD_OB3 BRCA2DBD_ 35.8 55 0.0012 17.1 2.4 13 30-42 1-13 (100)
165 PRK12281 rplX 50S ribosomal pr 35.8 46 0.00099 16.3 2.0 13 44-56 6-18 (76)
166 smart00739 KOW KOW (Kyprides, 35.3 31 0.00068 12.6 2.2 12 45-56 2-13 (28)
167 cd06819 PLPDE_III_LS_D-TA Type 34.6 90 0.002 19.2 3.6 23 37-59 309-331 (358)
168 PF09926 DUF2158: Uncharacteri 34.3 28 0.0006 15.9 1.1 10 45-54 1-10 (53)
169 PF10447 EXOSC1: Exosome compo 33.9 31 0.00067 17.1 1.3 30 25-54 40-78 (82)
170 PRK05585 yajC preprotein trans 33.2 25 0.00055 18.3 0.9 13 43-55 51-63 (106)
171 PF09652 Cas_VVA1548: Putative 32.4 43 0.00093 17.2 1.7 15 43-57 30-44 (93)
172 PF07591 PT-HINT: Pretoxin HIN 32.1 15 0.00033 19.6 0.0 15 42-56 11-25 (130)
173 cd00986 PDZ_LON_protease PDZ d 32.1 61 0.0013 15.1 2.2 13 44-56 24-36 (79)
174 COG1977 MoaD Molybdopterin con 32.0 68 0.0015 15.7 2.3 15 43-57 67-81 (84)
175 TIGR00638 Mop molybdenum-pteri 30.9 51 0.0011 14.9 1.7 13 44-56 48-60 (69)
176 PF03454 MoeA_C: MoeA C-termin 30.9 40 0.00088 15.5 1.4 19 36-54 52-70 (72)
177 PF12857 TOBE_3: TOBE-like dom 30.9 58 0.0013 14.7 1.9 12 44-55 46-57 (58)
178 KOG0971|consensus 30.1 85 0.0018 23.0 3.2 30 26-57 14-43 (1243)
179 PRK05886 yajC preprotein trans 29.4 38 0.00082 17.8 1.2 14 43-56 37-50 (109)
180 PF14444 S1-like: S1-like 28.8 47 0.001 15.5 1.3 12 45-56 34-45 (58)
181 PRK06531 yajC preprotein trans 28.4 34 0.00073 18.1 0.9 14 43-56 35-48 (113)
182 PRK00004 rplX 50S ribosomal pr 27.7 75 0.0016 16.4 2.1 13 44-56 4-16 (105)
183 COG1862 YajC Preprotein transl 27.6 45 0.00098 17.2 1.3 13 43-55 42-54 (97)
184 PF02699 YajC: Preprotein tran 27.5 18 0.00039 17.8 -0.2 13 43-55 35-47 (82)
185 cd04466 S1_YloQ_GTPase S1_YloQ 27.5 61 0.0013 14.6 1.7 12 44-55 37-48 (68)
186 PRK10413 hydrogenase 2 accesso 27.4 57 0.0012 16.2 1.6 13 44-56 42-54 (82)
187 TIGR02620 cas_VVA1548 putative 27.4 54 0.0012 16.8 1.5 15 43-57 30-44 (93)
188 PRK10409 hydrogenase assembly 27.3 63 0.0014 16.4 1.8 13 44-56 41-53 (90)
189 cd05837 MSH6_like The PWWP dom 26.9 60 0.0013 16.8 1.7 13 44-56 2-14 (110)
190 PRK11130 moaD molybdopterin sy 26.5 88 0.0019 15.0 2.4 15 43-57 64-78 (81)
191 PRK04247 hypothetical protein; 26.5 1.3E+02 0.0028 18.1 3.2 23 34-56 35-57 (238)
192 PRK03195 hypothetical protein; 26.4 1.1E+02 0.0023 17.7 2.8 28 23-50 147-174 (186)
193 cd04459 Rho_CSD Rho_CSD: Rho p 26.0 66 0.0014 15.4 1.6 14 44-57 40-53 (68)
194 COG1329 Transcriptional regula 24.9 48 0.001 18.9 1.1 13 43-55 3-15 (166)
195 cd04487 RecJ_OBF2_like RecJ_OB 24.6 55 0.0012 15.6 1.2 13 44-56 43-55 (73)
196 smart00110 C1Q Complement comp 24.2 53 0.0011 17.6 1.2 14 43-56 98-111 (135)
197 cd00136 PDZ PDZ domain, also c 24.1 81 0.0018 14.0 1.8 13 44-56 30-42 (70)
198 TIGR01079 rplX_bact ribosomal 24.1 97 0.0021 16.0 2.2 13 44-56 3-15 (104)
199 TIGR01687 moaD_arch MoaD famil 23.9 1E+02 0.0022 14.8 2.4 14 44-57 72-85 (88)
200 PF01878 EVE: EVE domain; Int 23.9 64 0.0014 17.1 1.5 14 43-56 38-51 (143)
201 COG0150 PurM Phosphoribosylami 23.9 1.8E+02 0.0039 18.6 3.6 29 29-57 151-184 (345)
202 cd06828 PLPDE_III_DapDC Type I 23.8 80 0.0017 19.4 2.1 17 44-63 339-355 (373)
203 COG3731 SrlB Phosphotransferas 23.8 82 0.0018 17.0 1.8 24 33-56 7-30 (123)
204 PF11948 DUF3465: Protein of u 23.7 86 0.0019 17.1 1.9 17 40-56 81-97 (131)
205 COG0298 HypC Hydrogenase matur 23.3 1.1E+02 0.0025 15.3 2.2 13 44-56 38-50 (82)
206 KOG4589|consensus 23.3 70 0.0015 19.0 1.6 29 34-63 56-84 (232)
207 COG1465 Predicted alternative 23.1 51 0.0011 20.8 1.1 16 41-56 344-359 (376)
208 PF12148 DUF3590: Protein of u 23.0 50 0.0011 16.6 0.9 14 43-56 64-77 (85)
209 PF11717 Tudor-knot: RNA bindi 22.8 54 0.0012 14.7 0.9 11 45-55 1-11 (55)
210 PF07039 DUF1325: SGF29 tudor- 22.7 73 0.0016 17.1 1.6 14 43-56 70-83 (130)
211 TIGR01682 moaD molybdopterin c 22.5 1.1E+02 0.0023 14.5 2.4 15 43-57 63-77 (80)
212 PF01157 Ribosomal_L21e: Ribos 22.2 81 0.0017 16.3 1.6 14 43-56 31-44 (99)
213 cd00992 PDZ_signaling PDZ doma 22.2 97 0.0021 14.2 1.9 13 44-56 43-55 (82)
214 COG0335 RplS Ribosomal protein 22.2 71 0.0015 17.1 1.4 14 42-55 18-31 (115)
215 COG3484 Predicted proteasome-t 22.1 67 0.0015 19.2 1.4 12 45-56 38-49 (255)
216 CHL00084 rpl19 ribosomal prote 21.8 75 0.0016 17.0 1.5 15 41-55 19-33 (117)
217 PF13742 tRNA_anti_2: OB-fold 21.8 66 0.0014 16.2 1.2 14 44-57 68-81 (99)
218 PF11604 CusF_Ec: Copper bindi 21.6 61 0.0013 15.3 1.1 15 42-56 40-54 (70)
219 smart00333 TUDOR Tudor domain. 21.0 95 0.0021 13.4 2.2 12 44-55 2-13 (57)
220 TIGR02219 phage_NlpC_fam putat 20.9 83 0.0018 16.7 1.6 13 43-55 75-87 (134)
221 PRK00111 hypothetical protein; 20.8 1.6E+02 0.0036 16.9 2.8 28 24-51 142-169 (180)
222 PRK03298 hypothetical protein; 20.7 1.7E+02 0.0038 17.5 2.9 22 35-56 10-31 (224)
223 PF07076 DUF1344: Protein of u 20.6 1.2E+02 0.0026 14.3 2.0 16 42-57 35-50 (61)
224 cd06810 PLPDE_III_ODC_DapDC_li 20.5 2E+02 0.0042 17.7 3.3 17 44-63 334-350 (368)
225 COG1430 Uncharacterized conser 20.5 1.2E+02 0.0026 16.4 2.1 24 33-56 96-122 (126)
226 cd06839 PLPDE_III_Btrk_like Ty 20.3 1.7E+02 0.0038 18.0 3.1 17 44-63 347-363 (382)
227 PLN02537 diaminopimelate decar 20.3 2.1E+02 0.0046 18.1 3.5 17 44-63 351-367 (410)
228 PF13533 Biotin_lipoyl_2: Biot 20.3 1E+02 0.0022 13.4 3.0 28 29-56 7-35 (50)
229 PRK04306 50S ribosomal protein 20.1 1E+02 0.0022 16.0 1.7 14 43-56 33-46 (98)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.73 E-value=1.5e-17 Score=99.98 Aligned_cols=61 Identities=36% Similarity=0.552 Sum_probs=53.4
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE-ecCCCCccc
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG-KPILGKGGY 62 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~-~~~~~~G~~ 62 (64)
+|+|+|++|++..+|.++.. .+|.+||||.+|+|+++|++|++|++||+|.. +....||.|
T Consensus 36 ~~~GVChsDlH~~~G~~~~~-~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C 97 (339)
T COG1064 36 EACGVCHTDLHVAKGDWPVP-KLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGEC 97 (339)
T ss_pred EEEeecchhhhhhcCCCCCC-CCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCCCC
Confidence 48999999999999998864 59999999999999999999999999999988 554455554
No 2
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.72 E-value=2e-17 Score=85.71 Aligned_cols=56 Identities=48% Similarity=0.706 Sum_probs=46.1
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
++++||++|++++++.......+|.++|||++|+|+++|+++++|++||+|+....
T Consensus 9 ~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~ 64 (109)
T PF08240_consen 9 RAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPN 64 (109)
T ss_dssp EEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESE
T ss_pred EEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecc
Confidence 48999999999999853334478999999999999999999999999999999654
No 3
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.67 E-value=2.2e-16 Score=94.55 Aligned_cols=64 Identities=44% Similarity=0.771 Sum_probs=54.8
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccCC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYSQ 64 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~ae 64 (64)
+|+++|+.|++++.|..+....+|+++|.|++|+|+++|++|++|++||+|+..... +.|+|||
T Consensus 35 ~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~G~~AE 99 (326)
T COG0604 35 KAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAE 99 (326)
T ss_pred EEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCCCCccee
Confidence 489999999999999633333689999999999999999999999999999999621 2699987
No 4
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.62 E-value=6.6e-16 Score=92.79 Aligned_cols=60 Identities=38% Similarity=0.529 Sum_probs=54.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCccc
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGY 62 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ 62 (64)
.|+|+|++|.+.++|..|. .+|.++|||.+|+|+++|++|+.+++||.|+....+.||-|
T Consensus 35 ~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C 94 (366)
T COG1062 35 TATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQC 94 (366)
T ss_pred EEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCccccCCCCEEEEcccCCCCCC
Confidence 4899999999999998775 49999999999999999999999999999999998767654
No 5
>KOG1197|consensus
Probab=99.61 E-value=1.2e-15 Score=89.40 Aligned_cols=61 Identities=39% Similarity=0.615 Sum_probs=55.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ 64 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae 64 (64)
+|+|+|..|++.++|.|. ....|++||.|.+|+|+++|+.|+++++||+|+.+.+ .|+|+|
T Consensus 43 ka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~--~g~yae 103 (336)
T KOG1197|consen 43 KACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNP--FGAYAE 103 (336)
T ss_pred hhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEecCCccccccccEEEEecc--chhhhe
Confidence 489999999999999884 3478999999999999999999999999999999997 799886
No 6
>KOG0023|consensus
Probab=99.61 E-value=1.6e-15 Score=90.61 Aligned_cols=54 Identities=28% Similarity=0.430 Sum_probs=49.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++|+|++|+++..+.|+. .++|.++|||.+|+|+++|++|++|++||+|-.=.
T Consensus 44 ~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~ 97 (360)
T KOG0023|consen 44 EYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKVGSNVTGFKIGDRVGVGW 97 (360)
T ss_pred EEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEECCCcccccccCeeeeeE
Confidence 4899999999999999886 68999999999999999999999999999996544
No 7
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.56 E-value=1.6e-14 Score=88.15 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=46.4
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++||++|++.+.+.++. .+|.++|||++|+|+++|++|++|++||+|....
T Consensus 41 ~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~ 93 (393)
T TIGR02819 41 VTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPF 93 (393)
T ss_pred EEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEEEcCccccccCCCEEEEec
Confidence 4789999999999886432 4689999999999999999999999999997753
No 8
>KOG0025|consensus
Probab=99.56 E-value=1.1e-14 Score=86.37 Aligned_cols=63 Identities=41% Similarity=0.572 Sum_probs=57.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccCC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ 64 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ae 64 (64)
.|+.|||+|+..++|.||..+.+|.+-|.|.+|+|+++|++++.|++||+|+.... ..|+|++
T Consensus 55 LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a-~lGtW~t 117 (354)
T KOG0025|consen 55 LAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSA-NLGTWRT 117 (354)
T ss_pred eecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCccCCCCeEeecCC-CCcccee
Confidence 37889999999999999988889999999999999999999999999999999887 5788864
No 9
>PLN02740 Alcohol dehydrogenase-like
Probab=99.50 E-value=1e-13 Score=83.93 Aligned_cols=61 Identities=33% Similarity=0.440 Sum_probs=50.5
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcc
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~ 61 (64)
+++++|++|++.+.+.++....+|.++|||++|+|+++|+++++|++||+|++.....||.
T Consensus 43 ~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~ 103 (381)
T PLN02740 43 LYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGD 103 (381)
T ss_pred EEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCCcCCCCCEEEecCCCCCCC
Confidence 4799999999999886543235689999999999999999999999999999876544443
No 10
>KOG0022|consensus
Probab=99.48 E-value=3.6e-14 Score=84.92 Aligned_cols=61 Identities=39% Similarity=0.596 Sum_probs=53.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCccc
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGY 62 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~ 62 (64)
.++++|++|.+..++..+ ...+|.++|||.+|+|+++|+.|+.+++||+|+.+..+.||.+
T Consensus 40 ~~t~vCHTD~~~~~g~~~-~~~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~CgeC 100 (375)
T KOG0022|consen 40 LATGVCHTDAYVWSGKDP-EGLFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCGEC 100 (375)
T ss_pred EEEeeccccceeecCCCc-cccCceEecccceeEEEEecCCccccCCCCEEeeccccCCCCc
Confidence 378999999999998754 3468999999999999999999999999999999988766654
No 11
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.43 E-value=6.8e-13 Score=80.09 Aligned_cols=59 Identities=41% Similarity=0.615 Sum_probs=49.2
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G 60 (64)
+++++|++|++...+.++. ..+|.++|||++|+|+++|+++++|++||+|++.....||
T Consensus 34 ~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg 92 (368)
T TIGR02818 34 VATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECG 92 (368)
T ss_pred EEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCC
Confidence 4789999999998886543 2568999999999999999999999999999886543333
No 12
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.41 E-value=7.9e-13 Score=79.75 Aligned_cols=52 Identities=29% Similarity=0.475 Sum_probs=45.2
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|++|++.+.+.++. ..+|.++|||++|+|+++|+++++|++||+|+.
T Consensus 45 ~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~ 96 (360)
T PLN02586 45 LYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGV 96 (360)
T ss_pred EEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEECCCCCccCCCCEEEE
Confidence 4789999999998876542 256889999999999999999999999999974
No 13
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.41 E-value=8.1e-13 Score=78.24 Aligned_cols=63 Identities=32% Similarity=0.424 Sum_probs=49.0
Q ss_pred CeeeeC-HHHHHHHhCCCCCC--CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-------CCcccCC
Q psy3510 1 MAAGIN-PVETYIRSGQYPNL--PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-------GKGGYSQ 64 (64)
Q Consensus 1 ~a~~l~-~~D~~~~~~~~~~~--~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-------~~G~~ae 64 (64)
+++++| .+|++...|.++.. ..+|.++|||++|+|+++|+++ +|++||+|+..... ..|+|+|
T Consensus 33 ~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~~vGdrV~~~~~~c~~~~~~~~G~~ae 105 (308)
T TIGR01202 33 WYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GFRPGDRVFVPGSNCYEDVRGLFGGASK 105 (308)
T ss_pred EEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CCCCCCEEEEeCccccccccccCCcccc
Confidence 478997 59998888865432 2468999999999999999998 69999999874311 1477775
No 14
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.41 E-value=1.1e-12 Score=79.13 Aligned_cols=59 Identities=41% Similarity=0.597 Sum_probs=49.3
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G 60 (64)
+++++|++|++...+.++. ..+|.++|||++|+|+++|+++++|++||+|++.....||
T Consensus 35 ~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg 93 (368)
T cd08300 35 LATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECG 93 (368)
T ss_pred EEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCC
Confidence 4789999999998886543 2578899999999999999999999999999987443343
No 15
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.41 E-value=5.8e-13 Score=79.75 Aligned_cols=53 Identities=28% Similarity=0.300 Sum_probs=43.7
Q ss_pred CeeeeCHHHHHHHhCCCCC---CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPN---LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~---~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++|||++|++.+.|.+.. ...+|.++|||++|+|+++|.+ .|++||+|+...
T Consensus 33 ~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~~vGdrV~~~~ 88 (341)
T cd08237 33 TYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TYKVGTKVVMVP 88 (341)
T ss_pred EEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--ccCCCCEEEECC
Confidence 4899999999999886431 1246899999999999998764 799999998754
No 16
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.40 E-value=8.6e-13 Score=79.10 Aligned_cols=54 Identities=33% Similarity=0.546 Sum_probs=45.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCC--CCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLP--DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~--~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+|+++|++|++.+.|.++..+ .+|.++|||++|+|+++|++ +.|++||+|+...
T Consensus 33 ~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~vGdrV~~~~ 88 (355)
T cd08230 33 LEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLSPGDLVVPTV 88 (355)
T ss_pred EEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCCCCCEEEecc
Confidence 489999999999998653221 35789999999999999999 9999999998764
No 17
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.40 E-value=1.2e-12 Score=79.02 Aligned_cols=53 Identities=40% Similarity=0.616 Sum_probs=46.5
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|++|++.+.+.++. .+|.++|||++|+|+++|++++++++||+|++..
T Consensus 41 ~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~ 93 (371)
T cd08281 41 AAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVF 93 (371)
T ss_pred EEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCCCCCcCCCCCEEEEcc
Confidence 4789999999999886542 4688999999999999999999999999998754
No 18
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.39 E-value=1.5e-12 Score=77.03 Aligned_cols=63 Identities=33% Similarity=0.342 Sum_probs=50.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCC-CCCCCEEEEecCCCCcccCC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH-FKVGDKVFGKPILGKGGYSQ 64 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~-~~~Gd~V~~~~~~~~G~~ae 64 (64)
+++++|++|++...+.++....+|.++|||++|+|+++|+++++ |++||+|++.... .|+|+|
T Consensus 38 ~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~~-~g~~a~ 101 (324)
T cd08291 38 EAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGS-YGTYAE 101 (324)
T ss_pred EEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCccccCCCCCEEEecCCC-CCcchh
Confidence 37899999999988866433356889999999999999999996 9999999986531 266654
No 19
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.39 E-value=1.6e-12 Score=78.29 Aligned_cols=59 Identities=32% Similarity=0.482 Sum_probs=48.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G 60 (64)
+++++|++|++...+.++ ...+|.++|||++|+|+++|+++++|++||+|++.....||
T Consensus 35 ~a~gi~~~D~~~~~g~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~ 93 (369)
T cd08301 35 LHTSLCHTDVYFWEAKGQ-TPLFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECK 93 (369)
T ss_pred EEEeeCchhHHHhcCCCC-CCCCCcccccccceEEEEeCCCCCccccCCEEEEccCCCCC
Confidence 378999999999888654 23568999999999999999999999999999987543333
No 20
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.38 E-value=2e-12 Score=78.58 Aligned_cols=52 Identities=29% Similarity=0.448 Sum_probs=45.1
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|++|+++..+.++. ..+|.++|||++|+|+++|+++++|++||+|..
T Consensus 39 ~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~ 90 (375)
T PLN02178 39 LFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGV 90 (375)
T ss_pred EEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccCCCCEEEE
Confidence 4789999999999886532 246889999999999999999999999999974
No 21
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.38 E-value=2.2e-12 Score=77.53 Aligned_cols=53 Identities=34% Similarity=0.548 Sum_probs=46.0
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|++|++...+.++. .+|.++|||++|+|+++|+++++|++||+|++..
T Consensus 34 ~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~ 86 (358)
T TIGR03451 34 QACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNW 86 (358)
T ss_pred EEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcccCCCCEEEEcc
Confidence 3789999999998886432 4688999999999999999999999999998743
No 22
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.37 E-value=2.2e-12 Score=76.64 Aligned_cols=55 Identities=31% Similarity=0.376 Sum_probs=45.8
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|++|++...+.+.....+|.++|||++|+|+++|++++.+++||+|+...
T Consensus 32 ~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 86 (339)
T cd08239 32 KASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYH 86 (339)
T ss_pred EEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCCCEEEECC
Confidence 3789999999988765432123578999999999999999999999999999865
No 23
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.36 E-value=2.3e-12 Score=77.90 Aligned_cols=59 Identities=41% Similarity=0.503 Sum_probs=48.3
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCc-ccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcc
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPA-ILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~-~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~ 61 (64)
+++++|.+|++.+.+..+.. ..+. ++|||++|+|+++| .++.+++||+|...+...||.
T Consensus 33 ~~~gICGSDlh~~~g~~~~~-~~~~~i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~~Cg~ 92 (350)
T COG1063 33 TATGICGSDLHIYRGGEPFV-PPGDIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGH 92 (350)
T ss_pred EEEeEchhhhhhccCCCCCC-CCCCcccCccceEEEEEec-cccCCCCCCEEEECCCcCCCC
Confidence 47899999999999865432 3334 99999999999999 777899999999987655654
No 24
>KOG0024|consensus
Probab=99.34 E-value=6.7e-13 Score=79.60 Aligned_cols=57 Identities=44% Similarity=0.524 Sum_probs=47.9
Q ss_pred CeeeeCHHHHHHHhCCCCCC--CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC
Q psy3510 1 MAAGINPVETYIRSGQYPNL--PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~--~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~ 57 (64)
++++||.+|++.+....... .+.|+++|||.+|+|.++|+.|+++++||||..-+..
T Consensus 37 ~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~ 95 (354)
T KOG0024|consen 37 KAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEPGL 95 (354)
T ss_pred eeEEecCccchhhccCCcCccccccccccccccccchhhhcccccccccCCeEEecCCC
Confidence 47899999999887643221 2579999999999999999999999999999877653
No 25
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.34 E-value=5.7e-12 Score=75.93 Aligned_cols=54 Identities=39% Similarity=0.549 Sum_probs=47.1
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
+++++|++|++...+.++ ..+|.++|||++|+|+++|++++++++||+|++...
T Consensus 35 ~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~ 88 (365)
T cd08277 35 LATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFI 88 (365)
T ss_pred EEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCccCCCCCEEEECCC
Confidence 478999999999888654 256889999999999999999999999999998654
No 26
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.33 E-value=6.6e-12 Score=74.98 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=45.0
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|++|++...+.++. ..+|.++|||++|+|+++|+++++|++||+|+.
T Consensus 35 ~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 86 (329)
T TIGR02822 35 RACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGI 86 (329)
T ss_pred EEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCcccCCCCEEEE
Confidence 4789999999999886542 234789999999999999999999999999975
No 27
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.31 E-value=6.8e-12 Score=75.04 Aligned_cols=52 Identities=25% Similarity=0.301 Sum_probs=42.0
Q ss_pred CeeeeCHHHHHHHh-CCCCC-CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRS-GQYPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~-~~~~~-~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|++|++... +.++. ...+|.++|||++|+|+++ ++++|++||+|+..
T Consensus 35 ~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~~~vGdrV~~~ 88 (343)
T PRK09880 35 TRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQTVAIN 88 (343)
T ss_pred EEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCccCCCCCEEEEC
Confidence 47999999998875 33221 1246899999999999999 78899999999865
No 28
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.30 E-value=1.2e-11 Score=72.77 Aligned_cols=61 Identities=36% Similarity=0.667 Sum_probs=49.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
+++++|+.|+....+.++.....|.++|+|++|+|+++|++++.+++||+|+++.. .|+|+
T Consensus 36 ~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--~g~~~ 96 (324)
T cd08292 36 TLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPV--HGTWA 96 (324)
T ss_pred EEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEeccC--CCcce
Confidence 36899999999988765432345789999999999999999999999999999863 35554
No 29
>PLN02827 Alcohol dehydrogenase-like
Probab=99.30 E-value=1e-11 Score=75.39 Aligned_cols=56 Identities=32% Similarity=0.472 Sum_probs=46.8
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCc
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G 60 (64)
+++++|++|++.+.+.. .+|.++|||++|+|+++|+++++|++||+|+......||
T Consensus 45 ~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg 100 (378)
T PLN02827 45 VSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECG 100 (378)
T ss_pred EEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCcccCCCCEEEEecCCCCC
Confidence 37899999999877632 357899999999999999999999999999987643343
No 30
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.28 E-value=1.8e-11 Score=73.68 Aligned_cols=52 Identities=33% Similarity=0.396 Sum_probs=44.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|++|++.+.+.++. ..+|.++|||++|+|+++|+++++|++||+|+.
T Consensus 42 ~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~ 93 (357)
T PLN02514 42 IYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGV 93 (357)
T ss_pred EEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCcccccCCCEEEE
Confidence 4789999999998876532 246889999999999999999999999999974
No 31
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.26 E-value=1.4e-11 Score=75.45 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=43.7
Q ss_pred CeeeeCHHHHHHH-hCCC-CCC----CCCCcccCccceEEEEEeCCCCC-CCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIR-SGQY-PNL----PDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~-~~~~-~~~----~~~~~~~G~e~~G~V~~vg~~v~-~~~~Gd~V~~~~ 55 (64)
+++++|++|++.. .+.+ +.. ..+|.++|||++|+|+++|++++ +|++||+|+...
T Consensus 34 ~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~vGdrV~~~~ 95 (410)
T cd08238 34 ISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQP 95 (410)
T ss_pred EEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCCCccCCCCCCCEEEEcC
Confidence 4789999999876 4532 110 13678999999999999999998 699999998864
No 32
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.26 E-value=3.3e-11 Score=71.32 Aligned_cols=63 Identities=35% Similarity=0.564 Sum_probs=50.5
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccCC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYSQ 64 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~ae 64 (64)
+++++|+.|++.+.+..+. ..+|.++|+|++|+|+++|+++++|++||+|+++... ..|+|++
T Consensus 37 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~ 100 (336)
T TIGR02817 37 KAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSNAE 100 (336)
T ss_pred EEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCCCcccc
Confidence 3789999999988775432 2467899999999999999999999999999987521 2477664
No 33
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.21 E-value=6.1e-11 Score=67.74 Aligned_cols=56 Identities=50% Similarity=0.746 Sum_probs=47.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
+++++|+.|++...+.++.....|.++|+|++|+|+++|++++.|++||+|++...
T Consensus 7 ~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~ 62 (271)
T cd05188 7 EAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPN 62 (271)
T ss_pred EEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCC
Confidence 37899999999988865422345789999999999999999999999999999863
No 34
>PRK10083 putative oxidoreductase; Provisional
Probab=99.21 E-value=5.6e-11 Score=70.56 Aligned_cols=53 Identities=30% Similarity=0.582 Sum_probs=45.4
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
.++++|++|++...+.++. ..+|.++|+|++|+|+++|++++.+++||+|+..
T Consensus 32 ~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 84 (339)
T PRK10083 32 KLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVD 84 (339)
T ss_pred EEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEECCCCccCCCCCEEEEc
Confidence 3789999999988876543 2468899999999999999999999999999853
No 35
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.21 E-value=9.5e-11 Score=67.85 Aligned_cols=62 Identities=34% Similarity=0.499 Sum_probs=50.8
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
++++|+.|++...+.++....+|.++|+|++|+|+++|++++++++||+|+++.....|+|+
T Consensus 16 ~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~ 77 (303)
T cd08251 16 AFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHA 77 (303)
T ss_pred EeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCccee
Confidence 68899999999887654333567899999999999999999999999999987643346655
No 36
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.20 E-value=6.6e-11 Score=70.95 Aligned_cols=53 Identities=25% Similarity=0.339 Sum_probs=42.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|++|++...+.+.....+|.++|||++|+|+++|++++.+ +||+|+..
T Consensus 31 ~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~ 83 (349)
T TIGR03201 31 AGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAVIVP 83 (349)
T ss_pred EEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEEEEC
Confidence 378999999988644322122468899999999999999999887 99999874
No 37
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.18 E-value=7.8e-11 Score=70.63 Aligned_cols=54 Identities=37% Similarity=0.500 Sum_probs=46.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCC------CCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH------FKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~------~~~Gd~V~~~~ 55 (64)
+++++|+.|++...+.++. ..+|.++|+|++|+|+++|++++. |++||+|++..
T Consensus 33 ~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~ 92 (361)
T cd08231 33 RLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSV 92 (361)
T ss_pred EEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEcc
Confidence 3789999999999886642 356889999999999999999986 99999999873
No 38
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.18 E-value=1.3e-10 Score=69.51 Aligned_cols=53 Identities=32% Similarity=0.397 Sum_probs=42.8
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|++|++....... ..+|.++|||++|+|+++|+++++|++||+|++..
T Consensus 33 ~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~ 85 (347)
T PRK10309 33 ASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVP 85 (347)
T ss_pred EEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCCCCCCCEEEECC
Confidence 378999999875432111 13578999999999999999999999999999864
No 39
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.18 E-value=1.4e-10 Score=68.42 Aligned_cols=56 Identities=36% Similarity=0.444 Sum_probs=47.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
+++++|+.|++...+.++....+|.++|+|++|+|+++|++++.+++||+|+++..
T Consensus 38 ~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~ 93 (329)
T cd08250 38 RFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATMSF 93 (329)
T ss_pred EEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCCCCCCCEEEEecC
Confidence 37899999999888765433356889999999999999999999999999998754
No 40
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.17 E-value=9.3e-11 Score=71.05 Aligned_cols=54 Identities=43% Similarity=0.652 Sum_probs=46.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
+++++|++|++...+.++. .+|.++|||++|+|+++|++++.+++||+|+++..
T Consensus 40 ~~~gi~~~D~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 93 (373)
T cd08299 40 VATGICRSDDHVVSGKLVT--PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFV 93 (373)
T ss_pred EEEEcCcccHHHhcCCCCC--CCCccccccceEEEEEeCCCCccCCCCCEEEECCC
Confidence 3789999999998886532 46789999999999999999999999999998753
No 41
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.17 E-value=9.5e-11 Score=69.60 Aligned_cols=53 Identities=38% Similarity=0.443 Sum_probs=46.3
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
.++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++++++||+|++.
T Consensus 33 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 85 (347)
T cd05278 33 TATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVP 85 (347)
T ss_pred EEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccccCCCCEEEec
Confidence 3789999999998886653 3568899999999999999999999999999984
No 42
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.17 E-value=1.4e-10 Score=70.46 Aligned_cols=55 Identities=36% Similarity=0.484 Sum_probs=47.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
.++++|++|+....+.++. .++|.++|+|++|+|+++|++++++++||+|++...
T Consensus 33 ~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 87 (386)
T cd08283 33 TATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFT 87 (386)
T ss_pred EEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCc
Confidence 3789999999999887654 246889999999999999999999999999998753
No 43
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.16 E-value=1.4e-10 Score=68.76 Aligned_cols=61 Identities=43% Similarity=0.562 Sum_probs=48.5
Q ss_pred eeeeCHHHHHHHhCCCCCCCC----CCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 2 AAGINPVETYIRSGQYPNLPD----LPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~----~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
++++|+.|+....+.++.... .|.++|+|++|+|+++|+++..|++||+|++... ..|+|+
T Consensus 38 ~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-~~g~~~ 102 (341)
T cd08290 38 AAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRP-GLGTWR 102 (341)
T ss_pred ecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecCC-CCccch
Confidence 689999999998876542222 5678999999999999999999999999998753 135554
No 44
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.16 E-value=1.1e-10 Score=69.51 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=41.3
Q ss_pred CeeeeCHHHHHHHhCC-C-CCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQ-Y-PNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~-~-~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+|++||+.|....... . .....+|.++|+|++|+|+++|+++++|++||+|++.
T Consensus 44 ~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 99 (345)
T cd08293 44 LYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF 99 (345)
T ss_pred EEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence 4899999996433211 0 1112457889999999999999999999999999875
No 45
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.15 E-value=1.9e-10 Score=68.23 Aligned_cols=55 Identities=38% Similarity=0.530 Sum_probs=46.5
Q ss_pred CeeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|++...+.++. ...+|.++|+|++|+|+++|+++..|++||+|+++.
T Consensus 33 ~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 89 (340)
T cd05284 33 GGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHP 89 (340)
T ss_pred EEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCcCCCEEEEcC
Confidence 3689999999998876542 224578999999999999999999999999999875
No 46
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.15 E-value=1.8e-10 Score=68.85 Aligned_cols=54 Identities=37% Similarity=0.464 Sum_probs=45.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|++|++...+.++. ...|.++|+|++|+|+++|++++++++||+|++..
T Consensus 32 ~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 85 (351)
T cd08285 32 TAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPA 85 (351)
T ss_pred EEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCccCCCCEEEEcC
Confidence 3789999999988775432 24578999999999999999999999999999853
No 47
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.14 E-value=2.3e-10 Score=68.01 Aligned_cols=53 Identities=32% Similarity=0.624 Sum_probs=44.7
Q ss_pred eeeeCHHHHHHHhCCCCC-------------------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 2 AAGINPVETYIRSGQYPN-------------------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~-------------------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
++++|++|+++..+.++. ....|.++|||++|+|+++|++++.|++||+|++.
T Consensus 37 ~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 108 (350)
T cd08274 37 ACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVLVD 108 (350)
T ss_pred eccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcccCCcceEEEEEeCCCCCCCCCCCEEEEe
Confidence 689999999988775431 12457899999999999999999999999999985
No 48
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.12 E-value=3.9e-10 Score=66.46 Aligned_cols=55 Identities=36% Similarity=0.675 Sum_probs=46.7
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
++++|+.|+.+..+.++....+|.++|+|++|+|+.+|+++..|++||+|+++..
T Consensus 36 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~ 90 (331)
T cd08273 36 ASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALTR 90 (331)
T ss_pred EEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCCCCEEEEeCC
Confidence 6899999999887765432246778999999999999999999999999999864
No 49
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.11 E-value=4.2e-10 Score=66.26 Aligned_cols=60 Identities=50% Similarity=0.824 Sum_probs=48.5
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
++++|+.|+....+.++.....+.++|+|++|+|+++|++++.+++||+|+++.. .|+|+
T Consensus 37 ~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~--~g~~~ 96 (334)
T PTZ00354 37 AAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRFKEGDRVMALLP--GGGYA 96 (334)
T ss_pred EEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEecC--CCcee
Confidence 6899999998887755433345678999999999999999999999999998753 35554
No 50
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.11 E-value=3.1e-10 Score=67.87 Aligned_cols=55 Identities=40% Similarity=0.526 Sum_probs=43.4
Q ss_pred CeeeeCHHHHHHHhCCC---CC-------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQY---PN-------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~---~~-------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|++...+.. +. ....|.++|+|++|+|+++|+++++|++||+|++..
T Consensus 32 ~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 96 (351)
T cd08233 32 AWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEP 96 (351)
T ss_pred EEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEeCCCCCCCCCCCEEEECC
Confidence 37899999988765321 10 012578999999999999999999999999999753
No 51
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.10 E-value=3.2e-10 Score=67.36 Aligned_cols=54 Identities=43% Similarity=0.612 Sum_probs=45.5
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|+....+.++ ....|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus 32 ~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~ 85 (343)
T cd08235 32 RACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAP 85 (343)
T ss_pred EEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEeeCCCCCCCCCCCEEEEcc
Confidence 378999999998877553 123467899999999999999999999999999873
No 52
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.10 E-value=6e-10 Score=67.43 Aligned_cols=52 Identities=33% Similarity=0.448 Sum_probs=45.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|+.|++...+.++. .+|.++|+|++|+|+++|++++.+++||+|++.
T Consensus 33 ~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 84 (375)
T cd08282 33 TTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVP 84 (375)
T ss_pred EEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCcCCCCCEEEEe
Confidence 4789999999999886542 468899999999999999999999999999874
No 53
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.10 E-value=2.4e-10 Score=68.95 Aligned_cols=51 Identities=43% Similarity=0.697 Sum_probs=44.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
.++++|++|++...+.++. .+|.++|+|++|+|+++|+++..+++||+|+.
T Consensus 35 ~a~gi~~~d~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 85 (365)
T cd08278 35 VATGICHTDLVVRDGGLPT--PLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVL 85 (365)
T ss_pred EEeecCcccHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCCCEEEE
Confidence 3789999999998886542 46789999999999999999999999999996
No 54
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.09 E-value=4.5e-10 Score=65.97 Aligned_cols=55 Identities=44% Similarity=0.649 Sum_probs=46.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|.....+.+.....+|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus 34 ~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~ 88 (323)
T cd05282 34 LAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG 88 (323)
T ss_pred EeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC
Confidence 3688999999888775543334678999999999999999999999999999986
No 55
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.09 E-value=4.4e-10 Score=64.43 Aligned_cols=56 Identities=41% Similarity=0.674 Sum_probs=47.0
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
+++++|+.|++...+.++ .+.++|+|++|+|+++|+.++++++||+|+++.. |+|+
T Consensus 5 ~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~---g~~~ 60 (288)
T smart00829 5 RAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP---GSFA 60 (288)
T ss_pred EEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC---Ccee
Confidence 378999999998877543 3578999999999999999999999999999864 5554
No 56
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.08 E-value=6.1e-10 Score=64.69 Aligned_cols=61 Identities=46% Similarity=0.761 Sum_probs=49.0
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
+++++|+.|+....+.++.....|.++|+|++|+|+++|+++..+++||+|+++.. .|+|+
T Consensus 35 ~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~--~g~~~ 95 (323)
T cd05276 35 AAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWKVGDRVCALLA--GGGYA 95 (323)
T ss_pred EEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEecC--CCcee
Confidence 36899999998887755433346789999999999999999999999999998854 34443
No 57
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.08 E-value=5.8e-10 Score=66.44 Aligned_cols=54 Identities=39% Similarity=0.557 Sum_probs=46.3
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|+....+.++.. .+|.++|+|++|+|+++|++++++++||+|++..
T Consensus 33 ~a~~i~~~d~~~~~g~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~ 86 (345)
T cd08286 33 LKTTICGTDLHILKGDVPTV-TPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISC 86 (345)
T ss_pred EEeeecchhhHHHcCCCCCC-CCCceecccceEEEEEeccCccccCCCCEEEECC
Confidence 37899999999988865432 3478999999999999999999999999999864
No 58
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.08 E-value=5.1e-10 Score=65.85 Aligned_cols=54 Identities=43% Similarity=0.659 Sum_probs=46.5
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|++...+.++. ...|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus 33 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~ 86 (332)
T cd08259 33 KAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERFKPGDRVILYY 86 (332)
T ss_pred EEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccCCCCCEEEECC
Confidence 3689999999998886543 24578999999999999999999999999999975
No 59
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.08 E-value=5e-10 Score=67.55 Aligned_cols=53 Identities=42% Similarity=0.671 Sum_probs=45.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
.++++|+.|++...+.++. .+|.++|+|++|+|+++|++++.+++||+|++..
T Consensus 33 ~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~ 85 (365)
T cd05279 33 VATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLF 85 (365)
T ss_pred EEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCCCEEEEcC
Confidence 3689999999988876542 4578999999999999999999999999999863
No 60
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.07 E-value=4.3e-10 Score=66.92 Aligned_cols=51 Identities=35% Similarity=0.515 Sum_probs=44.4
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|++|+....+.++. ..|.++|||++|+|+++|+++..+++||+|++
T Consensus 33 ~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 83 (345)
T cd08287 33 VATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIA 83 (345)
T ss_pred eeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCccCCCCEEEe
Confidence 3689999999888876542 45789999999999999999999999999987
No 61
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.07 E-value=6.9e-10 Score=63.54 Aligned_cols=56 Identities=43% Similarity=0.672 Sum_probs=47.4
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
++++|+.|++...+.++ .+|.++|+|++|+|+++|++++++++||+|+++.. |+|+
T Consensus 9 ~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~---g~~~ 64 (293)
T cd05195 9 AAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP---GAFA 64 (293)
T ss_pred EEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEec---Cccc
Confidence 68999999999887542 35788999999999999999999999999999864 5554
No 62
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.07 E-value=5.4e-10 Score=65.05 Aligned_cols=55 Identities=53% Similarity=0.989 Sum_probs=46.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|+....+.++.....|.++|+|++|+|+++|+++.+|++||+|+++.
T Consensus 35 ~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~ 89 (325)
T cd08253 35 HASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTN 89 (325)
T ss_pred EEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCCCCCEEEEec
Confidence 3689999999888776543335678999999999999999999999999999986
No 63
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.06 E-value=8e-10 Score=64.91 Aligned_cols=62 Identities=42% Similarity=0.687 Sum_probs=48.4
Q ss_pred eeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 2 AAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
++++|+.|+....+..+. ....|.++|+|++|+|+++|++++.+++||+|+++.....|+|+
T Consensus 36 ~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~ 99 (324)
T cd08244 36 AAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGYA 99 (324)
T ss_pred EEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccCCCCceee
Confidence 689999999988775432 12456789999999999999999999999999998621235554
No 64
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.06 E-value=6.9e-10 Score=65.98 Aligned_cols=52 Identities=40% Similarity=0.520 Sum_probs=44.8
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
.++++|+.|+..+.+.++. ..|.++|+|++|+|+++|++++.|++||+|+++
T Consensus 32 ~~~~~n~~d~~~~~~~~~~--~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~ 83 (343)
T cd08236 32 KACGICGSDIPRYLGTGAY--HPPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVN 83 (343)
T ss_pred EEEEECccchHhhcCCCCC--CCCcccCcceEEEEEEECCCCCcCCCCCEEEEc
Confidence 3789999999988775422 356789999999999999999999999999997
No 65
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.05 E-value=8.7e-10 Score=66.38 Aligned_cols=54 Identities=44% Similarity=0.647 Sum_probs=46.5
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
+++++|+.|+....+.++. .+|.++|+|++|+|+++|++++.+++||+|++...
T Consensus 33 ~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 86 (363)
T cd08279 33 AAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWI 86 (363)
T ss_pred EEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCccccCCCCEEEECCC
Confidence 3789999999988886542 46778999999999999999999999999998653
No 66
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.05 E-value=9.8e-10 Score=65.40 Aligned_cols=53 Identities=34% Similarity=0.654 Sum_probs=45.0
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++++++||+|++.
T Consensus 33 ~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~ 85 (333)
T cd08296 33 EACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVG 85 (333)
T ss_pred EEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccCCCCCEEEec
Confidence 3789999999988885532 2457899999999999999999999999999873
No 67
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.05 E-value=9.2e-10 Score=65.81 Aligned_cols=54 Identities=33% Similarity=0.438 Sum_probs=43.9
Q ss_pred CeeeeCHHHHHHHhCCCCC--------CCCCCcccCccceEEEEEeCCCCC--CCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPN--------LPDLPAILGTEVSGIVEEVGQGVK--HFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~--------~~~~~~~~G~e~~G~V~~vg~~v~--~~~~Gd~V~~~ 54 (64)
+++++|+.|++...+.+.. ....|.++|+|++|+|+++|+.++ +|++||+|++.
T Consensus 32 ~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~~~ 95 (350)
T cd08256 32 EACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISE 95 (350)
T ss_pred EEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCCCcccCCCCCCCEEEEC
Confidence 3789999999988775311 013567899999999999999999 89999999973
No 68
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.04 E-value=8.3e-10 Score=65.74 Aligned_cols=54 Identities=33% Similarity=0.453 Sum_probs=43.6
Q ss_pred CeeeeCHHHHHHHhCCC-C-CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQY-P-NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~-~-~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|++|+.++.+.. . ....+|.++|+|++|+|+++|++++.+++||+|+++
T Consensus 33 ~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 88 (341)
T PRK05396 33 KKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGE 88 (341)
T ss_pred EEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCCCCCEEEEC
Confidence 37899999998766531 1 111356789999999999999999999999999987
No 69
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.04 E-value=9.9e-10 Score=65.61 Aligned_cols=55 Identities=38% Similarity=0.534 Sum_probs=45.1
Q ss_pred CeeeeCHHHHHHHhCCCCC-----------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPN-----------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~-----------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|++|++...+.++. ....|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus 33 ~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 98 (350)
T cd08240 33 TACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYP 98 (350)
T ss_pred EEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEeeCCCCCCCCCCCEEEECC
Confidence 3789999999988775431 113457899999999999999999999999999873
No 70
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.04 E-value=7.3e-10 Score=65.85 Aligned_cols=55 Identities=27% Similarity=0.366 Sum_probs=44.5
Q ss_pred CeeeeCHHHHHHHhCCCC----------CCCCCCcccCccceEEEEEeCCCCCC-CCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYP----------NLPDLPAILGTEVSGIVEEVGQGVKH-FKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~----------~~~~~~~~~G~e~~G~V~~vg~~v~~-~~~Gd~V~~~~ 55 (64)
+++++|+.|++...+... .....|.++|+|++|+|+++|++++. |++||+|+++.
T Consensus 31 ~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~ 96 (341)
T cd08262 31 LACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLP 96 (341)
T ss_pred EEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeCCCCcCCCCCCCEEEecC
Confidence 378999999998877321 01134778999999999999999987 99999999984
No 71
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.04 E-value=1.4e-09 Score=66.12 Aligned_cols=53 Identities=38% Similarity=0.705 Sum_probs=43.1
Q ss_pred CeeeeCHHHHHHHhCC------CCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQ------YPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~------~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|++|++...+. ++....+|.++|+|++|+|+++|++++.|++||+|++
T Consensus 59 ~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 117 (384)
T cd08265 59 KACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA 117 (384)
T ss_pred EEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence 3789999999887631 1212245789999999999999999999999999986
No 72
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.04 E-value=1.2e-09 Score=64.71 Aligned_cols=51 Identities=37% Similarity=0.563 Sum_probs=44.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|+.|+....+.++. .+|.++|+|++|+|+.+|++++.+++||+|++
T Consensus 32 ~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~ 82 (334)
T cd08234 32 AACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGFKVGDRVAV 82 (334)
T ss_pred EEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCCCCCCEEEE
Confidence 3789999999998886543 36789999999999999999999999999987
No 73
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.03 E-value=8.4e-10 Score=65.97 Aligned_cols=55 Identities=33% Similarity=0.455 Sum_probs=43.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCC-CCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~-~~~~Gd~V~~~~ 55 (64)
+++++|+.|+....+........|.++|+|++|+|+++|++++ .|++||+|+++.
T Consensus 36 ~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~ 91 (352)
T cd08247 36 HAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIY 91 (352)
T ss_pred EEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCCCCCCEEEEee
Confidence 3789999999887542211112367899999999999999998 899999999875
No 74
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.03 E-value=1.1e-09 Score=65.17 Aligned_cols=63 Identities=37% Similarity=0.669 Sum_probs=48.5
Q ss_pred CeeeeCHHHHHHHhCCCCC--------------CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccC
Q psy3510 1 MAAGINPVETYIRSGQYPN--------------LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYS 63 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~--------------~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~a 63 (64)
+++++|+.|+....+.... ....|.++|+|++|+|+++|++++++++||+|+++... ..|+|+
T Consensus 37 ~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~ 114 (350)
T cd08248 37 HAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHA 114 (350)
T ss_pred EEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecceeEEEEEecCCCcccCCCCCEEEEecCCCCCccce
Confidence 3789999999988763210 12457899999999999999999999999999987521 235554
No 75
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.03 E-value=1e-09 Score=65.20 Aligned_cols=53 Identities=43% Similarity=0.611 Sum_probs=45.3
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|+.|+....+.++.. .+|.++|+|++|+|+++|++++.|++||+|++.
T Consensus 32 ~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~ 84 (337)
T cd08261 32 KRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGVAGLKVGDRVVVD 84 (337)
T ss_pred EEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEeCCCCCCCCCCCEEEEC
Confidence 37899999999988765432 457789999999999999999999999999984
No 76
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.03 E-value=1.1e-09 Score=65.22 Aligned_cols=52 Identities=31% Similarity=0.456 Sum_probs=44.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|+.|++...+.++. ..+|.++|+|++|+|+++|+++++|++||+|+.
T Consensus 32 ~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 83 (337)
T cd05283 32 TYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGV 83 (337)
T ss_pred EEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccCCCCEEEE
Confidence 3689999999998876532 245889999999999999999999999999974
No 77
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.02 E-value=1.8e-09 Score=63.75 Aligned_cols=53 Identities=47% Similarity=0.713 Sum_probs=45.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|+.|+....+.++.....|.++|+|++|+|+.+|++++.+++||+|++
T Consensus 34 ~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~Gd~V~~ 86 (338)
T cd08254 34 KAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAV 86 (338)
T ss_pred EEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCCCCEEEE
Confidence 36899999999988866533345788999999999999999999999999987
No 78
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.02 E-value=1.8e-09 Score=63.50 Aligned_cols=54 Identities=37% Similarity=0.512 Sum_probs=46.3
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++|+.|++...+.++.....|.++|+|++|+|+++|+++.++++||+|++..
T Consensus 36 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~ 89 (336)
T cd08276 36 AVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTF 89 (336)
T ss_pred EEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCCCCCEEEEec
Confidence 689999999988876543334678899999999999999999999999999875
No 79
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.01 E-value=1.2e-09 Score=63.93 Aligned_cols=60 Identities=28% Similarity=0.366 Sum_probs=46.9
Q ss_pred CeeeeCHHHHHHH-hCCCCCC-CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 1 MAAGINPVETYIR-SGQYPNL-PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 1 ~a~~l~~~D~~~~-~~~~~~~-~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
.++++|+.|+... .+..+.. +..|.++|+|++|+|+++|++++.+++||+|+++.. |+|+
T Consensus 27 ~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---g~~~ 88 (312)
T cd08269 27 EGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLSG---GAFA 88 (312)
T ss_pred EEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEecC---Ccce
Confidence 3689999999887 6643211 124778999999999999999999999999998764 5544
No 80
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.01 E-value=1.2e-09 Score=65.76 Aligned_cols=52 Identities=38% Similarity=0.643 Sum_probs=45.2
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCC---CCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH---FKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~---~~~Gd~V~~~ 54 (64)
.++++|+.|++...+.++. .+|.++|+|++|+|+.+|+++++ |++||+|++.
T Consensus 33 ~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~ 87 (367)
T cd08263 33 AACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGS 87 (367)
T ss_pred EEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCCCcCCCCCEEEEc
Confidence 3689999999988876643 56789999999999999999988 9999999984
No 81
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.01 E-value=2.2e-09 Score=64.59 Aligned_cols=54 Identities=35% Similarity=0.463 Sum_probs=43.4
Q ss_pred CeeeeCHHHHHHHhCCCC--CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~--~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|++|++...+... .....|.++|+|++|+|+++|+++++|++||+|++.
T Consensus 49 ~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 104 (364)
T PLN02702 49 KAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALE 104 (364)
T ss_pred EEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEc
Confidence 378999999998776321 011357789999999999999999999999999874
No 82
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.01 E-value=2.1e-09 Score=63.15 Aligned_cols=54 Identities=39% Similarity=0.618 Sum_probs=45.4
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++|+.|++...+.++.....|.++|||++|+|+++|++++.|++||+|++..
T Consensus 36 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~ 89 (342)
T cd08266 36 AAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYP 89 (342)
T ss_pred eeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCCCCCEEEEcc
Confidence 678999999988775432224578899999999999999999999999999874
No 83
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.00 E-value=1.7e-09 Score=64.51 Aligned_cols=54 Identities=31% Similarity=0.370 Sum_probs=42.8
Q ss_pred CeeeeCHHHHHHHhCCCC--CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~--~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|+.|+.++.+... ....+|.++|+|++|+|+++|+++++|++||+|++.
T Consensus 31 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 86 (340)
T TIGR00692 31 LATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVE 86 (340)
T ss_pred EEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEEC
Confidence 368999999987655311 111346689999999999999999999999999984
No 84
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.00 E-value=2.7e-09 Score=62.76 Aligned_cols=55 Identities=45% Similarity=0.749 Sum_probs=46.1
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
++++|+.|+....+.++.....|.++|+|++|+|+.+|+++.++++||+|+++..
T Consensus 35 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~ 89 (337)
T cd08275 35 ACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLTR 89 (337)
T ss_pred EEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEecC
Confidence 6789999999887755332245778999999999999999999999999999854
No 85
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=98.99 E-value=1.5e-09 Score=64.51 Aligned_cols=53 Identities=38% Similarity=0.485 Sum_probs=45.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|+....+.++. .+|.++|+|++|+|+++|++++.+++||+|+++.
T Consensus 33 ~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 85 (344)
T cd08284 33 TAAAICGSDLHIYRGHIPS--TPGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPF 85 (344)
T ss_pred EEeeccccchhhhcCCCCC--CCCcccccceEEEEEeeCCCccccCCCCEEEEcc
Confidence 3789999999888876542 4578899999999999999999999999999865
No 86
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=98.99 E-value=2.2e-09 Score=63.58 Aligned_cols=54 Identities=44% Similarity=0.600 Sum_probs=45.8
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|++...+.++. ..+|.++|+|++|+|+++|++++.+++||+|++..
T Consensus 33 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~ 86 (334)
T PRK13771 33 NYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGFKPGDRVASLL 86 (334)
T ss_pred EEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccCCCCCEEEECC
Confidence 3689999999888776543 24578899999999999999998899999999875
No 87
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=98.99 E-value=2.5e-09 Score=63.22 Aligned_cols=60 Identities=58% Similarity=0.953 Sum_probs=47.7
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
++++|+.|+....+.++. ...|.++|+|++|+|+.+|++++.+++||+|++... ..|+|+
T Consensus 37 ~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~-~~g~~~ 96 (327)
T PRK10754 37 AIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQS-ALGAYS 96 (327)
T ss_pred EEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCCCCCCCEEEECCC-CCccee
Confidence 689999999888776542 235778999999999999999999999999986532 235554
No 88
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=98.98 E-value=3.1e-09 Score=62.86 Aligned_cols=61 Identities=44% Similarity=0.718 Sum_probs=48.3
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC-CCcccC
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL-GKGGYS 63 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~-~~G~~a 63 (64)
++++|+.|++...+.++. ...+.++|+|++|+|+++|+++..|++||+|++.... ..|+|+
T Consensus 39 ~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~ 100 (336)
T cd08252 39 AVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSNA 100 (336)
T ss_pred EEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCCCCCCCCEEEEcCCCCCCccce
Confidence 689999999988775542 2456789999999999999999999999999987421 235554
No 89
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.97 E-value=2.6e-09 Score=62.42 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=45.3
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
+++++|+.|++.... . ..+.++|+|++|+|+++|++++.|++||+|+++.. .|+|+
T Consensus 34 ~~~~i~~~d~~~~~~-~----~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~--~g~~~ 89 (305)
T cd08270 34 AAISLNRGELKFAAE-R----PDGAVPGWDAAGVVERAAADGSGPAVGARVVGLGA--MGAWA 89 (305)
T ss_pred EEEecCHHHHHhhcc-C----CCCCcccceeEEEEEEeCCCCCCCCCCCEEEEecC--Cccee
Confidence 378999999987652 1 23578999999999999999999999999999863 36654
No 90
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.97 E-value=3.3e-09 Score=61.95 Aligned_cols=55 Identities=53% Similarity=0.953 Sum_probs=45.8
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|+....+.+......+.++|+|++|+|+.+|+++..|++||+|+++.
T Consensus 35 ~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~ 89 (326)
T cd08272 35 HASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCA 89 (326)
T ss_pred EEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEEcc
Confidence 3689999999988775432224577899999999999999999999999999875
No 91
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=98.97 E-value=3.5e-09 Score=63.11 Aligned_cols=52 Identities=35% Similarity=0.552 Sum_probs=44.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
.++++|+.|+....+.++. ..+|.++|+|++|+|+++|+++..+++||+|++
T Consensus 33 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~ 84 (345)
T cd08260 33 EACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTV 84 (345)
T ss_pred EEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccCCCCCEEEE
Confidence 3689999999988886543 245789999999999999999999999999987
No 92
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=98.95 E-value=3.1e-09 Score=62.47 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=43.5
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|++|+....+.++....+|.++|+|++|+|+++ +++.|++||+|++..
T Consensus 35 ~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~~Gd~V~~~~ 87 (325)
T cd05280 35 HYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFREGDEVLVTG 87 (325)
T ss_pred EEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCCCCCEEEEcc
Confidence 37899999999988865433345788999999999998 456799999999863
No 93
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=98.94 E-value=5.2e-09 Score=61.03 Aligned_cols=55 Identities=45% Similarity=0.725 Sum_probs=45.5
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
++++|+.|+....+.++....+|.++|+|++|+|+.+|+++.++++||+|+++..
T Consensus 36 ~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~ 90 (325)
T TIGR02824 36 AAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALVA 90 (325)
T ss_pred EEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCCCCCEEEEccC
Confidence 6789999998877655432245688999999999999999999999999999753
No 94
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=98.94 E-value=3.8e-09 Score=62.76 Aligned_cols=54 Identities=35% Similarity=0.498 Sum_probs=42.3
Q ss_pred CeeeeCHHHHHHHh-CCCCC-CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRS-GQYPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~-~~~~~-~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
.++++|+.|+.... +.+.. ...+|.++|+|++|+|+++|+++++|++||+|++.
T Consensus 29 ~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~ 84 (339)
T cd08232 29 AAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVN 84 (339)
T ss_pred EEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEc
Confidence 36899999988763 32211 11356789999999999999999999999999874
No 95
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=98.94 E-value=6.2e-09 Score=61.48 Aligned_cols=52 Identities=40% Similarity=0.598 Sum_probs=43.1
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++|++|+....+. .. ..+|.++|+|++|+|+++|++++.+++||+|++..
T Consensus 35 ~~~i~~~d~~~~~~~-~~-~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~ 86 (325)
T cd08264 35 MAGVNPVDYNVINAV-KV-KPMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYN 86 (325)
T ss_pred EEEechHHHHHHhCC-CC-CCCCeecccceeEEEEEECCCCCCCCCCCEEEECC
Confidence 689999999887642 11 13467899999999999999999999999999873
No 96
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=98.93 E-value=3.9e-09 Score=62.62 Aligned_cols=51 Identities=37% Similarity=0.562 Sum_probs=43.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|+.|++...+.++. ..|.++|+|++|+|+++|++++.|++||+|++
T Consensus 33 ~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~ 83 (338)
T PRK09422 33 EYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSLKVGDRVSI 83 (338)
T ss_pred EEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccCCCCCEEEE
Confidence 3789999999988776542 34678999999999999999999999999987
No 97
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.93 E-value=5e-09 Score=62.28 Aligned_cols=53 Identities=42% Similarity=0.611 Sum_probs=44.5
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
++++|+.|.....+.++.....+.++|+|++|+|+++|++++.+++||+|++.
T Consensus 35 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~ 87 (341)
T cd08297 35 ASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVK 87 (341)
T ss_pred EeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCCCCEEEEe
Confidence 68899999988877654322346689999999999999999999999999975
No 98
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=98.93 E-value=4.7e-09 Score=62.06 Aligned_cols=54 Identities=41% Similarity=0.651 Sum_probs=45.5
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
.++++|+.|++...+.+.. ...|.++|+|++|+|+++|++++.|++||+|+++.
T Consensus 34 ~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 87 (306)
T cd08258 34 AAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSET 87 (306)
T ss_pred EEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcCCCCCEEEEcc
Confidence 3689999999888775421 23568899999999999999999999999999875
No 99
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.93 E-value=3.8e-09 Score=61.65 Aligned_cols=54 Identities=48% Similarity=0.783 Sum_probs=45.0
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++|+.|+.+..+.+.....++.++|+|++|+|+.+|++++.|++||+|+++.
T Consensus 36 ~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~ 89 (328)
T cd08268 36 AIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIP 89 (328)
T ss_pred EEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCCCCCEEEecc
Confidence 678999999887765443234577899999999999999999999999999874
No 100
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=98.91 E-value=7.2e-09 Score=60.14 Aligned_cols=52 Identities=54% Similarity=0.860 Sum_probs=45.0
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++|+.|++...+.++. .+|.++|+|++|+|+.+|+++.++++||+|+++.
T Consensus 35 ~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~ 86 (320)
T cd05286 35 AIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAG 86 (320)
T ss_pred EeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCCCCCEEEEec
Confidence 678999999988775542 3567899999999999999999999999999875
No 101
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.90 E-value=6.8e-09 Score=61.39 Aligned_cols=53 Identities=43% Similarity=0.668 Sum_probs=45.2
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|+.|++...+.++. ...|.++|+|++|+|+++|+++.++++||+|++.
T Consensus 37 ~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 89 (329)
T cd08298 37 EACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVP 89 (329)
T ss_pred EEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCCCcCCCEEEEe
Confidence 3689999999998886543 2457899999999999999999999999999873
No 102
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=98.88 E-value=6.2e-09 Score=62.73 Aligned_cols=53 Identities=21% Similarity=0.141 Sum_probs=41.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCc--cceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGT--EVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~--e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+|+++||.|...+.+... ...+|.++|+ |++|+|..+|+++++|++||+|+++
T Consensus 51 ~a~~inp~~~~~~~~~~~-~~~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~ 105 (348)
T PLN03154 51 LYLSCDPYMRGRMRDFHD-SYLPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGI 105 (348)
T ss_pred EEEccCHHHHHhhhccCC-CCCCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEec
Confidence 478999999875543222 1135788997 7899999999999999999999875
No 103
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=98.88 E-value=1.1e-08 Score=60.54 Aligned_cols=52 Identities=35% Similarity=0.495 Sum_probs=44.1
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
.++++|+.|++...+.++. ..+|.++|+|++|+|+++|++++.+++||+|+.
T Consensus 32 ~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~ 83 (330)
T cd08245 32 EACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGV 83 (330)
T ss_pred EEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccccCCEEEE
Confidence 3689999999998876532 245778999999999999999999999999984
No 104
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=98.86 E-value=1e-08 Score=60.42 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=42.9
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|+....+.++.....|.++|+|++|+|++ .++..|++||+|+++.
T Consensus 34 ~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~ 86 (323)
T TIGR02823 34 AYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFREGDEVIVTG 86 (323)
T ss_pred EEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCCCCEEEEcc
Confidence 3789999999988886532224578899999999988 5667899999999875
No 105
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=98.86 E-value=4.8e-09 Score=61.43 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=28.0
Q ss_pred ccCccceEEEEEeCCCCC------CCCCCCEEEEecC
Q psy3510 26 ILGTEVSGIVEEVGQGVK------HFKVGDKVFGKPI 56 (64)
Q Consensus 26 ~~G~e~~G~V~~vg~~v~------~~~~Gd~V~~~~~ 56 (64)
++|||++|+|+++|++|+ ++++||+|.....
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~ 37 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVT 37 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCC
Confidence 589999999999999999 8999999987543
No 106
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=98.84 E-value=6.4e-09 Score=62.10 Aligned_cols=54 Identities=44% Similarity=0.677 Sum_probs=44.1
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
+++++|++|+....+.+. ...+.++|+|++|+|+++|++++.+++||+|+++..
T Consensus 34 ~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~ 87 (339)
T cd08249 34 KAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVH 87 (339)
T ss_pred EEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEec
Confidence 368999999887655331 134678999999999999999999999999999863
No 107
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=98.84 E-value=1.9e-08 Score=58.52 Aligned_cols=54 Identities=46% Similarity=0.776 Sum_probs=44.9
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++|+.|+....+.+......+.++|+|++|+|+.+|+++..+++||+|+++.
T Consensus 36 ~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~ 89 (323)
T cd08241 36 AAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT 89 (323)
T ss_pred EEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEec
Confidence 678999999988775532223466899999999999999999999999999986
No 108
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=98.82 E-value=1.6e-08 Score=60.31 Aligned_cols=53 Identities=38% Similarity=0.445 Sum_probs=42.0
Q ss_pred eeeeCHHHHHHHhCCC-C-CCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 2 AAGINPVETYIRSGQY-P-NLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~-~-~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
++++|+.|+.++.+.. . .....|.++|+|++|+|+.+|++++.+++||+|+++
T Consensus 34 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~ 88 (341)
T cd05281 34 AASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAE 88 (341)
T ss_pred EEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCCCCCEEEEC
Confidence 6899999988765421 0 111346689999999999999999999999999986
No 109
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=98.82 E-value=1.9e-08 Score=60.04 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=40.7
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccce--EEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVS--GIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~--G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+|+++|+.|++.+.+.++....+|.++|+++. |++..+++.+++|++||+|+++
T Consensus 45 ~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~ 100 (338)
T cd08295 45 LYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGF 100 (338)
T ss_pred EEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEEEec
Confidence 48999999999988843321245778887654 4555678888899999999875
No 110
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=98.80 E-value=2.7e-08 Score=58.59 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=42.4
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|+....+.++....+|.++|+|++|+|++ ++++.+++||+|+++.
T Consensus 35 ~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~ 87 (324)
T cd08288 35 HYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFKPGDRVVLTG 87 (324)
T ss_pred EEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCCCCCEEEECC
Confidence 3689999999988775432224577899999999998 6777899999999864
No 111
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.79 E-value=4e-08 Score=57.46 Aligned_cols=52 Identities=35% Similarity=0.537 Sum_probs=42.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|+.|+....+.++. ...|.++|+|++|+|+++|. ..+++||+|+++.
T Consensus 35 ~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~ 86 (320)
T cd08243 35 KAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAM 86 (320)
T ss_pred EEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCCCCCCEEEEec
Confidence 3689999999988875532 24567899999999999995 5799999999875
No 112
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=98.79 E-value=3.3e-08 Score=57.31 Aligned_cols=54 Identities=52% Similarity=0.827 Sum_probs=44.8
Q ss_pred eeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 2 AAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++|+.|+....+.+.. ....|.++|+|++|+|+.+|+++..+++||+|+++.
T Consensus 36 ~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~ 91 (309)
T cd05289 36 AAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMT 91 (309)
T ss_pred EeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCCCCCCCEEEEcc
Confidence 688999999888775421 113478899999999999999999999999999986
No 113
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.78 E-value=2.6e-08 Score=59.46 Aligned_cols=53 Identities=36% Similarity=0.487 Sum_probs=41.4
Q ss_pred CeeeeCHHHHHHHhCC-CCC-CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEE
Q psy3510 1 MAAGINPVETYIRSGQ-YPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~-~~~-~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~ 53 (64)
+++++|+.|++..... ... ....|.++|+|++|+|+++|+++++|++||+|++
T Consensus 30 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 84 (343)
T cd05285 30 RAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAI 84 (343)
T ss_pred EEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEE
Confidence 3689999998876321 111 1134678999999999999999999999999986
No 114
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=98.78 E-value=3.2e-08 Score=60.18 Aligned_cols=55 Identities=40% Similarity=0.525 Sum_probs=42.9
Q ss_pred CeeeeCHHHHHHHhCCCCCC---------CCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNL---------PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~---------~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
+++++|.+|++...+..... ...+.++|||++|+|+++|++++.+++||+|++..
T Consensus 50 ~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 113 (393)
T cd08246 50 MAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGEGVKNWKVGDEVVVHC 113 (393)
T ss_pred EEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEEEEEeCCCCCcCCCCCEEEEec
Confidence 36899999998876641100 01235889999999999999999999999999875
No 115
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.76 E-value=4.1e-08 Score=57.38 Aligned_cols=54 Identities=44% Similarity=0.695 Sum_probs=44.6
Q ss_pred eeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 2 AAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++|+.|+....+.++. ....+..+|+|++|.|.++|+++..+++||+|++..
T Consensus 35 ~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~ 90 (319)
T cd08267 35 AASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRL 90 (319)
T ss_pred EeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEec
Confidence 689999999988775421 113467899999999999999999999999999875
No 116
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=98.76 E-value=3.1e-08 Score=58.43 Aligned_cols=47 Identities=40% Similarity=0.639 Sum_probs=39.6
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|++|++...+.++ .|.++|+|++|+|+++|++ +++||+|...
T Consensus 32 ~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~~~G~~V~~~ 78 (319)
T cd08242 32 LLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---ELVGKRVVGE 78 (319)
T ss_pred EEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---CCCCCeEEEC
Confidence 378999999998887543 4778999999999999987 6799999753
No 117
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=98.76 E-value=3.5e-08 Score=58.17 Aligned_cols=62 Identities=26% Similarity=0.316 Sum_probs=43.3
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC----CCcccCC
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL----GKGGYSQ 64 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~----~~G~~ae 64 (64)
+++++|++|.....+.......+|.++|+|++|+|++.+ +..+++||+|++.... ..|+|+|
T Consensus 35 ~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~~Gd~V~~~~~~~~~~~~g~~~~ 100 (326)
T cd08289 35 AYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFKPGDEVIVTSYDLGVSHHGGYSE 100 (326)
T ss_pred EEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCCCCCEEEEcccccCCCCCCccee
Confidence 368999999876543211112357889999999999854 5679999999987510 2466654
No 118
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.76 E-value=5e-08 Score=57.15 Aligned_cols=53 Identities=36% Similarity=0.540 Sum_probs=44.1
Q ss_pred eeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
++++|+.|+....+.+... ..+.++|+|++|+|+.+|++++.+++||+|+++.
T Consensus 36 ~~~i~~~d~~~~~~~~~~~-~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~ 88 (325)
T cd08271 36 AAGLNPVDWKVIAWGPPAW-SYPHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHA 88 (325)
T ss_pred EEecCHHHHHHhcCCCCCC-CCCcccccceEEEEEEeCCCCCcCCCCCEEEecc
Confidence 6889999998877654321 2367899999999999999999999999999885
No 119
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=98.60 E-value=2.2e-07 Score=56.76 Aligned_cols=55 Identities=42% Similarity=0.665 Sum_probs=41.9
Q ss_pred CeeeeCHHHHHHHhCCCCCC--------C-CCC-cccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPNL--------P-DLP-AILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~--------~-~~~-~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
.++++|..|++...+.+... . ..+ .++|+|++|+|+++|++++.+++||+|++..
T Consensus 45 ~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 109 (398)
T TIGR01751 45 MAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDASGVVWRVGPGVTRWKVGDEVVASC 109 (398)
T ss_pred EEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceEEEEEEeCCCCCCCCCCCEEEEcc
Confidence 36899999987765532100 0 123 3799999999999999999999999999875
No 120
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=98.39 E-value=8.2e-07 Score=51.48 Aligned_cols=34 Identities=47% Similarity=0.606 Sum_probs=31.4
Q ss_pred CCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 22 DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 22 ~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
.+|.++|+|++|+|+++|+++++|++||+|+++.
T Consensus 19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 52 (277)
T cd08255 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG 52 (277)
T ss_pred cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC
Confidence 4789999999999999999999999999999874
No 121
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=98.35 E-value=1.5e-06 Score=51.64 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=35.5
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+|+++|+.|. .+.++. ...|.++|.|++|+|+++++ .|++||+|+++
T Consensus 39 ~a~~~n~~~~---~g~~~~-~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~ 85 (325)
T TIGR02825 39 LFLSVDPYMR---VAAKRL-KEGDTMMGQQVARVVESKNV---ALPKGTIVLAS 85 (325)
T ss_pred EEEecCHHHh---cccCcC-CCCCcEecceEEEEEEeCCC---CCCCCCEEEEe
Confidence 4789999654 343322 23467999999999999773 69999999986
No 122
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=98.20 E-value=3.1e-06 Score=50.00 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=34.8
Q ss_pred CeeeeCHHHHHHHhCCCCCCCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEe
Q psy3510 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~ 54 (64)
+++++|+.|.+.... ....|.++|+|++|+|++ .++.|++||+|++.
T Consensus 41 ~a~~in~~~~~~~~~----~~~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~~ 87 (329)
T cd08294 41 LFLSVDPYMRPYSKR----LNEGDTMIGTQVAKVIES---KNSKFPVGTIVVAS 87 (329)
T ss_pred EEEecCHHHhccccc----CCCCCcEecceEEEEEec---CCCCCCCCCEEEee
Confidence 478999987642111 113578999999999985 45679999999975
No 123
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=98.06 E-value=1.7e-05 Score=46.84 Aligned_cols=53 Identities=25% Similarity=0.150 Sum_probs=37.7
Q ss_pred CeeeeCHHHHHHHhCCCCC--CCCCCcccCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 1 MAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 1 ~a~~l~~~D~~~~~~~~~~--~~~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
.++++|+.|.....+.... ....+.++|+|++|+|+++|++ .+++||+|+++.
T Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~~ 94 (329)
T cd05288 40 LYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSGFL 94 (329)
T ss_pred EEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEeccc
Confidence 3688999876554442111 0123567899999999999964 799999999763
No 124
>KOG1198|consensus
Probab=97.89 E-value=3e-05 Score=47.45 Aligned_cols=61 Identities=38% Similarity=0.701 Sum_probs=40.7
Q ss_pred eeeeCHHHHHHHhCCCCCCC---CCCcccCccceEE---EEEeC-CCCCCCCCCCEEEEecCCCCcccCC
Q psy3510 2 AAGINPVETYIRSGQYPNLP---DLPAILGTEVSGI---VEEVG-QGVKHFKVGDKVFGKPILGKGGYSQ 64 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~---~~~~~~G~e~~G~---V~~vg-~~v~~~~~Gd~V~~~~~~~~G~~ae 64 (64)
++++||.|++++.+.+.... .+|.+++.+..|+ +...| ..+..+..||.+..... .|+|||
T Consensus 41 a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--~g~~ae 108 (347)
T KOG1198|consen 41 AVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVAFLS--SGGLAE 108 (347)
T ss_pred EeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEeeccC--CCceee
Confidence 67889999999999876554 5665555555444 44455 33445667776666555 788876
No 125
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=94.16 E-value=0.1 Score=26.47 Aligned_cols=25 Identities=44% Similarity=0.494 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCC---------CCCCCCCEEEEec
Q psy3510 31 VSGIVEEVGQGV---------KHFKVGDKVFGKP 55 (64)
Q Consensus 31 ~~G~V~~vg~~v---------~~~~~Gd~V~~~~ 55 (64)
..|+|+++|++. ..+++||+|+...
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK 68 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence 689999999973 3499999998654
No 126
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=93.49 E-value=0.17 Score=26.21 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCC----CCCCCCEEEEec
Q psy3510 31 VSGIVEEVGQGVK----HFKVGDKVFGKP 55 (64)
Q Consensus 31 ~~G~V~~vg~~v~----~~~~Gd~V~~~~ 55 (64)
..|+|+++|++.. ..++||+|+.--
T Consensus 45 ~~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~ 73 (100)
T PTZ00414 45 NEGTVVAVAAATKDWTPTVKVGDTVLLPE 73 (100)
T ss_pred ceeEEEEECCCCccccceecCCCEEEEcC
Confidence 3699999999753 389999998643
No 127
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=93.14 E-value=0.15 Score=25.97 Aligned_cols=25 Identities=44% Similarity=0.551 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCC---------CCCCCCEEEEec
Q psy3510 31 VSGIVEEVGQGVK---------HFKVGDKVFGKP 55 (64)
Q Consensus 31 ~~G~V~~vg~~v~---------~~~~Gd~V~~~~ 55 (64)
..|+|+++|++.. .+++||+|+...
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~ 69 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGK 69 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEcC
Confidence 5799999999542 389999998654
No 128
>KOG1202|consensus
Probab=93.10 E-value=0.096 Score=37.87 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=34.6
Q ss_pred eeeeCHHHHHHHhCCCCCCC------CCCcccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 2 AAGINPVETYIRSGQYPNLP------DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 2 a~~l~~~D~~~~~~~~~~~~------~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
|+.+|.+|+++..|.++... ....++|.||+|+- .-|.||+++.+
T Consensus 1453 YAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~GrRvM~mvp 1503 (2376)
T KOG1202|consen 1453 YAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGRRVMGMVP 1503 (2376)
T ss_pred eccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCcEEEEeee
Confidence 68899999999999875321 12468999999963 44889999886
No 129
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=91.75 E-value=0.4 Score=24.33 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCC----CCCCCCEEEEec
Q psy3510 31 VSGIVEEVGQGVK----HFKVGDKVFGKP 55 (64)
Q Consensus 31 ~~G~V~~vg~~v~----~~~~Gd~V~~~~ 55 (64)
..|+|+++|+... ..++||+|+...
T Consensus 36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~~~ 64 (91)
T PRK14533 36 MKAEVVAVGKLDDEEDFDIKVGDKVIFSK 64 (91)
T ss_pred ceEEEEEECCCCccccccccCCCEEEEcc
Confidence 5799999997532 389999998654
No 130
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=90.78 E-value=0.24 Score=25.05 Aligned_cols=26 Identities=42% Similarity=0.448 Sum_probs=18.3
Q ss_pred ceEEEEEeCC--------CC-CCCCCCCEEEEecC
Q psy3510 31 VSGIVEEVGQ--------GV-KHFKVGDKVFGKPI 56 (64)
Q Consensus 31 ~~G~V~~vg~--------~v-~~~~~Gd~V~~~~~ 56 (64)
..|+|+++|+ .+ ..+++||+|+.-..
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~ 69 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKY 69 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETT
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEecccc
Confidence 5899999999 22 35889999987654
No 131
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=0.54 Score=24.20 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCC---------CCCCCCEEEEecC
Q psy3510 32 SGIVEEVGQGVK---------HFKVGDKVFGKPI 56 (64)
Q Consensus 32 ~G~V~~vg~~v~---------~~~~Gd~V~~~~~ 56 (64)
-|+|+++|+.-. .+++||+|+.--.
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky 70 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKY 70 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEECcc
Confidence 589999997321 2899999986543
No 132
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=89.39 E-value=0.57 Score=29.05 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCcccCccceEEEEEeC--CCCCCCCCCCEEEEecC
Q psy3510 23 LPAILGTEVSGIVEEVG--QGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 23 ~~~~~G~e~~G~V~~vg--~~v~~~~~Gd~V~~~~~ 56 (64)
.|.-+|-...|-++... ++...|++||.|.....
T Consensus 67 ~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~G 102 (340)
T COG2130 67 PPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVSG 102 (340)
T ss_pred CCcCCCceeECCeeEEEEecCCCCCCCCCEEEeccc
Confidence 46667766666444322 45678999999998764
No 133
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=83.67 E-value=0.95 Score=23.90 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=28.0
Q ss_pred cccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 25 AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 25 ~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
.++|-..+|+|.--|......++||+|+.+.-
T Consensus 58 vI~g~~gSg~I~lNGAAAr~~~~GD~vII~sy 89 (111)
T cd06919 58 VIPGERGSGVICLNGAAARLGQPGDRVIIMAY 89 (111)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 57888899999999988888999999998764
No 134
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=81.75 E-value=1.2 Score=23.97 Aligned_cols=32 Identities=31% Similarity=0.320 Sum_probs=28.0
Q ss_pred cccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 25 AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 25 ~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
.++|-..+|+|.--|......++||+|+.+.-
T Consensus 59 vI~G~~GSg~I~lNGAAArl~~~GD~VII~sy 90 (126)
T TIGR00223 59 AIAGKRGSRIICVNGAAARCVSVGDIVIIASY 90 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 57888999999999988888999999998764
No 135
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=80.61 E-value=1.4 Score=23.78 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=27.9
Q ss_pred cccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 25 AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 25 ~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
.++|-..+|+|.--|......++||+|+.+.-
T Consensus 59 vI~g~~GSg~I~lNGAAAr~~~~GD~vII~ay 90 (126)
T PRK05449 59 VIAGERGSGVICLNGAAARLVQVGDLVIIAAY 90 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 57888899999998988888999999998764
No 136
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=80.31 E-value=0.79 Score=24.37 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=24.4
Q ss_pred cccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 25 AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 25 ~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
.++|-..+|+|.--|......++||+|+.+.-
T Consensus 59 vI~g~~GSg~I~lNGaAArl~~~GD~vII~sy 90 (116)
T PF02261_consen 59 VIPGERGSGVICLNGAAARLVQVGDRVIIMSY 90 (116)
T ss_dssp EEEESTTTT-EEEEGGGGGCS-TT-EEEEEEE
T ss_pred EEEccCCCcEEEECCHHHhccCCCCEEEEEEc
Confidence 47788889999999988888999999988753
No 137
>KOG1641|consensus
Probab=77.93 E-value=4.9 Score=20.96 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=19.7
Q ss_pred CccceEEEEEeCCCCC---------CCCCCCEEEEec
Q psy3510 28 GTEVSGIVEEVGQGVK---------HFKVGDKVFGKP 55 (64)
Q Consensus 28 G~e~~G~V~~vg~~v~---------~~~~Gd~V~~~~ 55 (64)
+-...|+|+++|++-. ..++||+|..--
T Consensus 41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpe 77 (104)
T KOG1641|consen 41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPE 77 (104)
T ss_pred cccceEEEEEEcCccccCCCCCcCccccCCCEEEeec
Confidence 4445699999997532 378899997543
No 138
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=68.69 E-value=10 Score=20.14 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=13.9
Q ss_pred EeCCCC-CCCCCCCEEEEecC
Q psy3510 37 EVGQGV-KHFKVGDKVFGKPI 56 (64)
Q Consensus 37 ~vg~~v-~~~~~Gd~V~~~~~ 56 (64)
..+... ..+++||.|++...
T Consensus 47 ~~~~~~~~~L~~GD~VLA~~~ 67 (124)
T PF15057_consen 47 ALSDAMRHSLQVGDKVLAPWE 67 (124)
T ss_pred EccCcccCcCCCCCEEEEecC
Confidence 334333 34999999999865
No 139
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=68.51 E-value=4 Score=22.00 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=26.2
Q ss_pred cccCccceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 25 AILGTEVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 25 ~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
.++|-..+|+|.--|....-.++||+|+.+..
T Consensus 58 vI~g~rGSg~I~lNGAAArl~~~GD~VII~sy 89 (126)
T COG0853 58 VIAGERGSGVICLNGAAARLVQVGDLVIIMSY 89 (126)
T ss_pred EEEccCCCcEEEechHHHhhCCCCCEEEEEEc
Confidence 46788889988888877667999999998764
No 140
>KOG1196|consensus
Probab=66.01 E-value=13 Score=23.34 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=19.7
Q ss_pred cceEEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 30 EVSGIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 30 e~~G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
..++.|++. .-+++++||.|.+...
T Consensus 78 ~GV~kVi~S--~~~~~~~GD~v~g~~g 102 (343)
T KOG1196|consen 78 FGVAKVIDS--GHPNYKKGDLVWGIVG 102 (343)
T ss_pred CceEEEEec--CCCCCCcCceEEEecc
Confidence 567788885 4468999999998874
No 141
>KOG0544|consensus
Probab=65.67 E-value=13 Score=19.37 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=18.6
Q ss_pred EEEEeCCCCCCCCCCCEEEEecC
Q psy3510 34 IVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 34 ~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
.++.-|.+++..+.||.|.++..
T Consensus 6 ~~i~~Gdg~tfpK~Gqtvt~hYt 28 (108)
T KOG0544|consen 6 QVISPGDGRTFPKKGQTVTVHYT 28 (108)
T ss_pred EEeeCCCCcccCCCCCEEEEEEE
Confidence 46677788888899999998875
No 142
>PF04319 NifZ: NifZ domain; InterPro: IPR007415 NifZ is a short protein is found in the nif (nitrogen fixation) operon. It is required for the maturation of the nitrogenase MoFe protein. In the absence of NifZ, only one of the two P-clusters of the MoFe protein is matured to the ultimate [8Fe-7S] structure. The other P-cluster site in the protein contains a [4Fe-4S] cluster pair, suggesting that NifZ is specifically required for the formation of the second P-cluster [, , ].; GO: 0009399 nitrogen fixation
Probab=62.25 E-value=10 Score=18.66 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=13.3
Q ss_pred CCCCCCEEEEecCC-CCccc
Q psy3510 44 HFKVGDKVFGKPIL-GKGGY 62 (64)
Q Consensus 44 ~~~~Gd~V~~~~~~-~~G~~ 62 (64)
.|+.||+|.+.... .+|+|
T Consensus 4 ~f~~G~~V~a~~~irNDGt~ 23 (75)
T PF04319_consen 4 RFEWGDKVRARKDIRNDGTF 23 (75)
T ss_pred ccCCCCEEEEEEEeEcCCCC
Confidence 47888888887764 44555
No 143
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=57.22 E-value=10 Score=19.32 Aligned_cols=13 Identities=46% Similarity=0.585 Sum_probs=11.4
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.+++||+|+.+..
T Consensus 76 ~Lk~GD~V~ll~~ 88 (100)
T PF10844_consen 76 GLKVGDKVLLLRV 88 (100)
T ss_pred CCcCCCEEEEEEe
Confidence 5899999999875
No 144
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=57.19 E-value=12 Score=18.95 Aligned_cols=17 Identities=29% Similarity=0.603 Sum_probs=12.0
Q ss_pred CCCCCCEEEEecCCCCcccC
Q psy3510 44 HFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 44 ~~~~Gd~V~~~~~~~~G~~a 63 (64)
.+++||+++.... |+|+
T Consensus 82 ~l~~GD~l~f~~~---GAYt 98 (116)
T PF00278_consen 82 ELEVGDWLVFENM---GAYT 98 (116)
T ss_dssp TTTTT-EEEESS----SSSS
T ss_pred CCCCCCEEEEecC---cccc
Confidence 5889999988876 7765
No 145
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=56.35 E-value=18 Score=18.25 Aligned_cols=15 Identities=47% Similarity=0.490 Sum_probs=10.4
Q ss_pred CCCCCCCCEEEEecC
Q psy3510 42 VKHFKVGDKVFGKPI 56 (64)
Q Consensus 42 v~~~~~Gd~V~~~~~ 56 (64)
...+++||+|..++.
T Consensus 64 ~~~~~vGd~v~iiP~ 78 (94)
T PF14031_consen 64 ADRLKVGDKVEIIPN 78 (94)
T ss_dssp GCGT-TT-EEEEEES
T ss_pred CCCCCCCCEEEEECC
Confidence 345999999998876
No 146
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=52.79 E-value=12 Score=20.07 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.4
Q ss_pred CCCCCCCCEEEEecCC
Q psy3510 42 VKHFKVGDKVFGKPIL 57 (64)
Q Consensus 42 v~~~~~Gd~V~~~~~~ 57 (64)
..+|++||.|+.++..
T Consensus 40 ~~~f~~GDlvLflpt~ 55 (129)
T PF10377_consen 40 FRNFQVGDLVLFLPTR 55 (129)
T ss_pred EecCCCCCEEEEEecC
Confidence 4679999999998874
No 147
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=52.28 E-value=27 Score=21.75 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=22.8
Q ss_pred CCCcccCccceEEEEEeCCCCCCCCCCCEEEEecCC
Q psy3510 22 DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57 (64)
Q Consensus 22 ~~~~~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~ 57 (64)
....+|-+-++= |++ +.+..+.+|+||++..++
T Consensus 29 ~wG~vPvWGfA~-Vve--S~~~~i~vGerlyGy~P~ 61 (314)
T PF11017_consen 29 GWGIVPVWGFAT-VVE--SRHPGIAVGERLYGYFPM 61 (314)
T ss_pred cCcccccceEEE-EEe--eCCCCccCccEEEeeccc
Confidence 345566666554 444 556678999999999874
No 148
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=50.84 E-value=14 Score=18.20 Aligned_cols=13 Identities=54% Similarity=0.792 Sum_probs=10.2
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.|++||.|++=..
T Consensus 2 ~f~~GdlVwaK~k 14 (83)
T cd05834 2 QFKAGDLVFAKVK 14 (83)
T ss_pred CCCCCCEEEEecC
Confidence 4889999988653
No 149
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=50.74 E-value=17 Score=17.84 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=12.3
Q ss_pred CCCCCCCEEEEecCC
Q psy3510 43 KHFKVGDKVFGKPIL 57 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~~ 57 (64)
+.+++||.|+.+.+.
T Consensus 4 ~~~~~GD~VyViYrN 18 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRN 18 (75)
T ss_pred cccCCCCEEEEEEcC
Confidence 568999999998763
No 150
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=47.38 E-value=22 Score=15.99 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=10.3
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.|++||.|-+...
T Consensus 2 ~~~~G~~Ve~~~~ 14 (61)
T smart00743 2 DFKKGDRVEVFSK 14 (61)
T ss_pred CcCCCCEEEEEEC
Confidence 4788999988873
No 151
>PF10077 DUF2314: Uncharacterized protein conserved in bacteria (DUF2314); InterPro: IPR018756 This domain of unkown function is found in various bacterial hypothetical proteins, as well as putative ankyrin repeat proteins.
Probab=45.11 E-value=50 Score=17.80 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.3
Q ss_pred cCccceEEEEEeCCCCCCCCCCCEEEEec
Q psy3510 27 LGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55 (64)
Q Consensus 27 ~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~ 55 (64)
-|..+.|++.--...+++++.||+|..-.
T Consensus 62 ~g~~~~G~L~N~P~~i~~v~~Gd~v~~~~ 90 (133)
T PF10077_consen 62 DGDTFSGVLDNEPYYITNVKEGDRVSFPI 90 (133)
T ss_pred cCCEEEEEEecCCcccCCCCCCCEEEECh
Confidence 35667888877667788899999987654
No 152
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=44.98 E-value=12 Score=15.95 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=10.0
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
.++++||.|+....
T Consensus 14 anW~pGd~~ivpp~ 27 (40)
T PF10417_consen 14 ANWKPGDDVIVPPP 27 (40)
T ss_dssp TTTCTTSGEBE-TT
T ss_pred cCCCCCCCeEcCCC
Confidence 35899999986554
No 153
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=43.82 E-value=25 Score=16.73 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=9.9
Q ss_pred CCCCCCCCEEEEecC
Q psy3510 42 VKHFKVGDKVFGKPI 56 (64)
Q Consensus 42 v~~~~~Gd~V~~~~~ 56 (64)
+...++||+|+.+..
T Consensus 35 v~~v~~Gd~VLVHaG 49 (68)
T PF01455_consen 35 VPDVKVGDYVLVHAG 49 (68)
T ss_dssp CTSB-TT-EEEEETT
T ss_pred eCCCCCCCEEEEecC
Confidence 345899999998864
No 154
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=43.28 E-value=36 Score=20.05 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=9.8
Q ss_pred CCCCCCCEEEEec
Q psy3510 43 KHFKVGDKVFGKP 55 (64)
Q Consensus 43 ~~~~~Gd~V~~~~ 55 (64)
++.++||.|-+..
T Consensus 73 ~nvKVGD~VKaTG 85 (213)
T PRK06763 73 SNVKVGDEVKATG 85 (213)
T ss_pred CCcccCcEEEEch
Confidence 4578999997763
No 155
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=42.87 E-value=17 Score=22.98 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.8
Q ss_pred CCCCCCCCCEEEEecC
Q psy3510 41 GVKHFKVGDKVFGKPI 56 (64)
Q Consensus 41 ~v~~~~~Gd~V~~~~~ 56 (64)
+|+.+++||+|.+...
T Consensus 312 sVt~Lk~GD~VL~~~~ 327 (344)
T PRK02290 312 SVVDLKPGDEVLGYLE 327 (344)
T ss_pred eeeecCCCCEEEEEec
Confidence 4678999999999886
No 156
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=42.83 E-value=18 Score=22.99 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=13.9
Q ss_pred CCCCCCCCCEEEEecCC
Q psy3510 41 GVKHFKVGDKVFGKPIL 57 (64)
Q Consensus 41 ~v~~~~~Gd~V~~~~~~ 57 (64)
+|+.+++||+|.+....
T Consensus 322 sVt~Lk~GD~vL~~~~~ 338 (354)
T PF01959_consen 322 SVTELKPGDEVLVYLEE 338 (354)
T ss_pred eeeecCCCCEEEEEecC
Confidence 45679999999998863
No 157
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=42.58 E-value=22 Score=15.99 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=8.1
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
++++||+|+....
T Consensus 46 ~L~~G~~V~~~ik 58 (64)
T PF03459_consen 46 GLKPGDEVYASIK 58 (64)
T ss_dssp T-STT-EEEEEE-
T ss_pred CCCCCCEEEEEEe
Confidence 4789999988765
No 158
>PF13403 Hint_2: Hint domain
Probab=42.32 E-value=19 Score=19.63 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=11.4
Q ss_pred CCCCCCCCEEEEec
Q psy3510 42 VKHFKVGDKVFGKP 55 (64)
Q Consensus 42 v~~~~~Gd~V~~~~ 55 (64)
+.++++||+|...-
T Consensus 18 Ve~L~~GD~V~T~d 31 (147)
T PF13403_consen 18 VEDLRPGDRVLTRD 31 (147)
T ss_pred eeccCCCCEEEecC
Confidence 56799999998764
No 159
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=42.04 E-value=16 Score=18.17 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=10.7
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
+++++||+|+....
T Consensus 36 ~~L~~Gd~VvT~gG 49 (84)
T TIGR00739 36 ESLKKGDKVLTIGG 49 (84)
T ss_pred HhCCCCCEEEECCC
Confidence 35899999987653
No 160
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=38.28 E-value=19 Score=16.59 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=7.1
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.|+.||+|...-+
T Consensus 5 pf~~GdrVQlTD~ 17 (54)
T PF14801_consen 5 PFRAGDRVQLTDP 17 (54)
T ss_dssp S--TT-EEEEEET
T ss_pred CCCCCCEEEEccC
Confidence 4899999976543
No 161
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=37.61 E-value=35 Score=16.70 Aligned_cols=14 Identities=36% Similarity=0.278 Sum_probs=11.3
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
...++||+|+.+..
T Consensus 34 ~~~~vGD~VLVH~G 47 (76)
T TIGR00074 34 GEVKVGDYVLVHVG 47 (76)
T ss_pred CCCCCCCEEEEecC
Confidence 35789999998864
No 162
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=37.47 E-value=42 Score=16.66 Aligned_cols=13 Identities=38% Similarity=0.340 Sum_probs=10.4
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.+++||+|..+..
T Consensus 8 ~I~~GD~V~Vi~G 20 (83)
T CHL00141 8 HVKIGDTVKIISG 20 (83)
T ss_pred cccCCCEEEEeEc
Confidence 4788999988864
No 163
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=36.69 E-value=21 Score=20.93 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=8.7
Q ss_pred CCCCCCCCEEEEecC
Q psy3510 42 VKHFKVGDKVFGKPI 56 (64)
Q Consensus 42 v~~~~~Gd~V~~~~~ 56 (64)
.+.+++||+|.+...
T Consensus 29 m~~L~iGD~Vla~d~ 43 (217)
T PF01079_consen 29 MSDLKIGDRVLAVDS 43 (217)
T ss_dssp GGG--TT-EEEEE-T
T ss_pred HHHCCCCCEEEEecC
Confidence 456999999999874
No 164
>cd04495 BRCA2DBD_OB3 BRCA2DBD_OB3: A subfamily of OB folds corresponding to the third OB fold (OB3) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA).
Probab=35.78 E-value=55 Score=17.06 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=10.8
Q ss_pred cceEEEEEeCCCC
Q psy3510 30 EVSGIVEEVGQGV 42 (64)
Q Consensus 30 e~~G~V~~vg~~v 42 (64)
|.+|.|+.++...
T Consensus 1 D~VGvVvsV~~~~ 13 (100)
T cd04495 1 DTVGVVISVGKPI 13 (100)
T ss_pred CceEEEEEEcccc
Confidence 5789999999765
No 165
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=35.78 E-value=46 Score=16.25 Aligned_cols=13 Identities=31% Similarity=0.069 Sum_probs=10.4
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.++.||+|..+..
T Consensus 6 ~I~kGD~V~Vi~G 18 (76)
T PRK12281 6 KVKKGDMVKVIAG 18 (76)
T ss_pred cccCCCEEEEeEc
Confidence 4788999988764
No 166
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=35.26 E-value=31 Score=12.59 Aligned_cols=12 Identities=42% Similarity=0.379 Sum_probs=8.8
Q ss_pred CCCCCEEEEecC
Q psy3510 45 FKVGDKVFGKPI 56 (64)
Q Consensus 45 ~~~Gd~V~~~~~ 56 (64)
+++||+|.....
T Consensus 2 ~~~G~~V~I~~G 13 (28)
T smart00739 2 FEVGDTVRVIAG 13 (28)
T ss_pred CCCCCEEEEeEC
Confidence 577888877754
No 167
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=34.56 E-value=90 Score=19.16 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=15.7
Q ss_pred EeCCCCCCCCCCCEEEEecCCCC
Q psy3510 37 EVGQGVKHFKVGDKVFGKPILGK 59 (64)
Q Consensus 37 ~vg~~v~~~~~Gd~V~~~~~~~~ 59 (64)
+....-..+++||+|...+...|
T Consensus 309 ~~~~~~~~~~vGd~v~~~p~h~c 331 (358)
T cd06819 309 ELEDGAAPLKIGDRLELVPGHCD 331 (358)
T ss_pred ecCCCCCCCCCCCEEEEECCCcC
Confidence 43333356999999999887533
No 168
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=34.29 E-value=28 Score=15.86 Aligned_cols=10 Identities=60% Similarity=0.750 Sum_probs=6.2
Q ss_pred CCCCCEEEEe
Q psy3510 45 FKVGDKVFGK 54 (64)
Q Consensus 45 ~~~Gd~V~~~ 54 (64)
|++||.|..-
T Consensus 1 f~~GDvV~LK 10 (53)
T PF09926_consen 1 FKIGDVVQLK 10 (53)
T ss_pred CCCCCEEEEc
Confidence 5677777543
No 169
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=33.87 E-value=31 Score=17.14 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=12.2
Q ss_pred cccCccceEEEEEe--CC----CC---CCCCCCCEEEEe
Q psy3510 25 AILGTEVSGIVEEV--GQ----GV---KHFKVGDKVFGK 54 (64)
Q Consensus 25 ~~~G~e~~G~V~~v--g~----~v---~~~~~Gd~V~~~ 54 (64)
..+...+.|.+-.- -+ .+ .-|++||.|.+.
T Consensus 40 ~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ 78 (82)
T PF10447_consen 40 RPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRAR 78 (82)
T ss_dssp S----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEE
T ss_pred cccccccEEEEEeeeecccccchhhHHhccCCCCEEEEE
Confidence 44566777876541 11 11 239999998764
No 170
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=33.25 E-value=25 Score=18.28 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=10.2
Q ss_pred CCCCCCCEEEEec
Q psy3510 43 KHFKVGDKVFGKP 55 (64)
Q Consensus 43 ~~~~~Gd~V~~~~ 55 (64)
+++++||+|+...
T Consensus 51 ~~Lk~Gd~VvT~g 63 (106)
T PRK05585 51 SSLAKGDEVVTNG 63 (106)
T ss_pred HhcCCCCEEEECC
Confidence 4589999997664
No 171
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=32.41 E-value=43 Score=17.21 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.3
Q ss_pred CCCCCCCEEEEecCC
Q psy3510 43 KHFKVGDKVFGKPIL 57 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~~ 57 (64)
...++||.|++..+.
T Consensus 30 ~~i~~GD~ViGtLPv 44 (93)
T PF09652_consen 30 ADIQPGDVVIGTLPV 44 (93)
T ss_pred HHccCCCEEEEeCcH
Confidence 458899999998873
No 172
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=32.10 E-value=15 Score=19.57 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEEecC
Q psy3510 42 VKHFKVGDKVFGKPI 56 (64)
Q Consensus 42 v~~~~~Gd~V~~~~~ 56 (64)
+..+++||+|++...
T Consensus 11 Ie~I~~GD~Vls~d~ 25 (130)
T PF07591_consen 11 IEDIKVGDRVLSYDE 25 (130)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 456899999998754
No 173
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=32.05 E-value=61 Score=15.11 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.2
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.+++||.+..+..
T Consensus 24 gL~~GD~I~~Ing 36 (79)
T cd00986 24 KLKAGDHIIAVDG 36 (79)
T ss_pred CCCCCCEEEEECC
Confidence 5889998887754
No 174
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=31.97 E-value=68 Score=15.69 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=12.7
Q ss_pred CCCCCCCEEEEecCC
Q psy3510 43 KHFKVGDKVFGKPIL 57 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~~ 57 (64)
+.++-||.|..+++.
T Consensus 67 t~L~dGDeVa~~PPV 81 (84)
T COG1977 67 TPLKDGDEVAFFPPV 81 (84)
T ss_pred ccCCCCCEEEEeCCC
Confidence 459999999999875
No 175
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=30.95 E-value=51 Score=14.87 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=10.5
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.+++||+|+....
T Consensus 48 ~l~~G~~v~~~ik 60 (69)
T TIGR00638 48 GLKPGKEVYAVIK 60 (69)
T ss_pred CCCCCCEEEEEEE
Confidence 3789999988765
No 176
>PF03454 MoeA_C: MoeA C-terminal region (domain IV); InterPro: IPR005111 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this domain is uncertain. The structure of this domain is known [] and forms an incomplete beta barrel.; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1T3E_A 2FU3_A 2FTS_A 1WU2_A 1XI8_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A 2NQM_B ....
Probab=30.91 E-value=40 Score=15.49 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=12.1
Q ss_pred EEeCCCCCCCCCCCEEEEe
Q psy3510 36 EEVGQGVKHFKVGDKVFGK 54 (64)
Q Consensus 36 ~~vg~~v~~~~~Gd~V~~~ 54 (64)
+.+.++...++.||.|-.+
T Consensus 52 ~~ip~~~~~~~~G~~V~v~ 70 (72)
T PF03454_consen 52 IVIPEGVEGLEAGEEVEVI 70 (72)
T ss_dssp EEEETT-SEE-TTEEEEEE
T ss_pred EEeCCCCCccCCCCEEEEE
Confidence 4455666778899988765
No 177
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=30.89 E-value=58 Score=14.66 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.1
Q ss_pred CCCCCCEEEEec
Q psy3510 44 HFKVGDKVFGKP 55 (64)
Q Consensus 44 ~~~~Gd~V~~~~ 55 (64)
++..||+|+..+
T Consensus 46 ~l~~G~~V~l~P 57 (58)
T PF12857_consen 46 GLQPGDRVYLRP 57 (58)
T ss_pred CCCCCCEEEEEe
Confidence 477899998754
No 178
>KOG0971|consensus
Probab=30.06 E-value=85 Score=23.01 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=24.7
Q ss_pred ccCccceEEEEEeCCCCCCCCCCCEEEEecCC
Q psy3510 26 ILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57 (64)
Q Consensus 26 ~~G~e~~G~V~~vg~~v~~~~~Gd~V~~~~~~ 57 (64)
+-|-+.-|+|.-+|. +.|..|++|.++...
T Consensus 14 vtgknl~G~VayvG~--T~FA~G~WvGVvLDe 43 (1243)
T KOG0971|consen 14 VTGKNLQGTVAYVGQ--TQFAEGKWVGVVLDE 43 (1243)
T ss_pred eccCCccceEEEecc--cccccCceEEEEecc
Confidence 457777899999997 579999999888763
No 179
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=29.44 E-value=38 Score=17.83 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=10.6
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
+++++||+|+....
T Consensus 37 ~~Lk~GD~VvT~gG 50 (109)
T PRK05886 37 ESLQPGDRVHTTSG 50 (109)
T ss_pred HhcCCCCEEEECCC
Confidence 45899999987653
No 180
>PF14444 S1-like: S1-like
Probab=28.83 E-value=47 Score=15.54 Aligned_cols=12 Identities=50% Similarity=0.678 Sum_probs=9.7
Q ss_pred CCCCCEEEEecC
Q psy3510 45 FKVGDKVFGKPI 56 (64)
Q Consensus 45 ~~~Gd~V~~~~~ 56 (64)
.++||+|.+...
T Consensus 34 P~vGdrV~v~A~ 45 (58)
T PF14444_consen 34 PKVGDRVLVEAI 45 (58)
T ss_pred CccCCEEEEEEE
Confidence 489999998764
No 181
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=28.42 E-value=34 Score=18.13 Aligned_cols=14 Identities=21% Similarity=0.181 Sum_probs=10.6
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
+.+++||+|+....
T Consensus 35 ~sLk~GD~VvT~GG 48 (113)
T PRK06531 35 NAIQKGDEVVTIGG 48 (113)
T ss_pred HhcCCCCEEEECCC
Confidence 35899999987653
No 182
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=27.67 E-value=75 Score=16.44 Aligned_cols=13 Identities=31% Similarity=0.240 Sum_probs=10.4
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.++.||+|..+..
T Consensus 4 ~i~kGD~V~Vi~G 16 (105)
T PRK00004 4 KIKKGDTVIVIAG 16 (105)
T ss_pred cccCCCEEEEeEc
Confidence 4788999988875
No 183
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=27.56 E-value=45 Score=17.18 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=10.0
Q ss_pred CCCCCCCEEEEec
Q psy3510 43 KHFKVGDKVFGKP 55 (64)
Q Consensus 43 ~~~~~Gd~V~~~~ 55 (64)
+.+++||+|+...
T Consensus 42 ~sL~kGD~VvT~g 54 (97)
T COG1862 42 NSLKKGDEVVTIG 54 (97)
T ss_pred HhccCCCEEEEcC
Confidence 3588999998765
No 184
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=27.53 E-value=18 Score=17.80 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=0.4
Q ss_pred CCCCCCCEEEEec
Q psy3510 43 KHFKVGDKVFGKP 55 (64)
Q Consensus 43 ~~~~~Gd~V~~~~ 55 (64)
+++++||+|+...
T Consensus 35 ~~Lk~Gd~VvT~g 47 (82)
T PF02699_consen 35 ASLKPGDEVVTIG 47 (82)
T ss_dssp G------------
T ss_pred HcCCCCCEEEECC
Confidence 4588999997664
No 185
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=27.52 E-value=61 Score=14.62 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=9.3
Q ss_pred CCCCCCEEEEec
Q psy3510 44 HFKVGDKVFGKP 55 (64)
Q Consensus 44 ~~~~Gd~V~~~~ 55 (64)
...+||+|....
T Consensus 37 ~~~VGD~V~~~~ 48 (68)
T cd04466 37 PPAVGDRVEFEP 48 (68)
T ss_pred CCCCCcEEEEEE
Confidence 368999998754
No 186
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=27.43 E-value=57 Score=16.22 Aligned_cols=13 Identities=15% Similarity=-0.130 Sum_probs=10.6
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
..++||+|+.+..
T Consensus 42 ~~~vGDyVLVHaG 54 (82)
T PRK10413 42 ADLLGQWVLVHVG 54 (82)
T ss_pred ccccCCEEEEecc
Confidence 4679999998874
No 187
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family. This model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Probab=27.35 E-value=54 Score=16.84 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=12.2
Q ss_pred CCCCCCCEEEEecCC
Q psy3510 43 KHFKVGDKVFGKPIL 57 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~~ 57 (64)
...+.||.|++..+.
T Consensus 30 ~~i~~GD~ViGtLPv 44 (93)
T TIGR02620 30 IDISQGDKVIGTLPV 44 (93)
T ss_pred HHhcCCCEEEEeCCH
Confidence 457899999998874
No 188
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=27.31 E-value=63 Score=16.41 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=10.7
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
..++||+|+.+..
T Consensus 41 ~~~vGDyVLVHaG 53 (90)
T PRK10409 41 QPRVGQWVLVHVG 53 (90)
T ss_pred ccCCCCEEEEecC
Confidence 3689999998874
No 189
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=26.94 E-value=60 Score=16.80 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=9.5
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.|++||.|.+=..
T Consensus 2 ~~~~GdlVWaK~~ 14 (110)
T cd05837 2 KYQVGDLVWAKVS 14 (110)
T ss_pred CCCCCCEEEEeCC
Confidence 4788898887553
No 190
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=26.46 E-value=88 Score=14.99 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=12.5
Q ss_pred CCCCCCCEEEEecCC
Q psy3510 43 KHFKVGDKVFGKPIL 57 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~~ 57 (64)
+.++.||+|..+++.
T Consensus 64 ~~l~dgDeVai~PPV 78 (81)
T PRK11130 64 HPLTDGDEVAFFPPV 78 (81)
T ss_pred CCCCCCCEEEEeCCC
Confidence 359999999998875
No 191
>PRK04247 hypothetical protein; Provisional
Probab=26.46 E-value=1.3e+02 Score=18.14 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.2
Q ss_pred EEEEeCCCCCCCCCCCEEEEecC
Q psy3510 34 IVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 34 ~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
.|.-.|..-+.+..||+++.+-+
T Consensus 35 ~V~Y~GR~~s~L~~g~RliivKp 57 (238)
T PRK04247 35 EVEYEGRAASELGPGDRLIIIKP 57 (238)
T ss_pred EEEEeecccccCCCCcEEEEEeC
Confidence 45566776678999999998887
No 192
>PRK03195 hypothetical protein; Provisional
Probab=26.43 E-value=1.1e+02 Score=17.68 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCcccCccceEEEEEeCCCCCCCCCCCE
Q psy3510 23 LPAILGTEVSGIVEEVGQGVKHFKVGDK 50 (64)
Q Consensus 23 ~~~~~G~e~~G~V~~vg~~v~~~~~Gd~ 50 (64)
+..-+|.+++-.|.-.|+....++.|.+
T Consensus 147 LN~~lG~~vV~~I~i~GP~~psw~~g~~ 174 (186)
T PRK03195 147 IAAAVGDGVVTSLKITGPAAPSWRKGPR 174 (186)
T ss_pred HHHHhCccceeEEEEeCCCCCCCCcCCC
Confidence 3456899999999999999888999986
No 193
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=25.98 E-value=66 Score=15.37 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=11.5
Q ss_pred CCCCCCEEEEecCC
Q psy3510 44 HFKVGDKVFGKPIL 57 (64)
Q Consensus 44 ~~~~Gd~V~~~~~~ 57 (64)
+++.||.|.+....
T Consensus 40 ~LR~GD~V~G~vr~ 53 (68)
T cd04459 40 NLRTGDTVVGQIRP 53 (68)
T ss_pred CCCCCCEEEEEEeC
Confidence 48999999998764
No 194
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=24.90 E-value=48 Score=18.86 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=9.8
Q ss_pred CCCCCCCEEEEec
Q psy3510 43 KHFKVGDKVFGKP 55 (64)
Q Consensus 43 ~~~~~Gd~V~~~~ 55 (64)
..|++||.|+.-.
T Consensus 3 ~~Fk~Gd~VVYP~ 15 (166)
T COG1329 3 MAFKIGDHVVYPA 15 (166)
T ss_pred ccccCCCEEEecC
Confidence 3599999997544
No 195
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=24.59 E-value=55 Score=15.62 Aligned_cols=13 Identities=31% Similarity=0.181 Sum_probs=9.8
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.++.||+|.....
T Consensus 43 ~l~~Gd~V~v~G~ 55 (73)
T cd04487 43 EVEVGDIVRVTGE 55 (73)
T ss_pred CCCCCCEEEEEEE
Confidence 4788999887654
No 196
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=24.19 E-value=53 Score=17.62 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.2
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
-.+++||+|+....
T Consensus 98 L~L~~GD~Vwl~l~ 111 (135)
T smart00110 98 LQLRQGDQVWLELP 111 (135)
T ss_pred EEECCCCEEEEEEe
Confidence 35899999998764
No 197
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=24.13 E-value=81 Score=14.03 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=10.9
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.+++||+++.+..
T Consensus 30 gl~~GD~I~~Ing 42 (70)
T cd00136 30 GLQAGDVILAVNG 42 (70)
T ss_pred CCCCCCEEEEECC
Confidence 5999999998764
No 198
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle. This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.
Probab=24.13 E-value=97 Score=16.05 Aligned_cols=13 Identities=31% Similarity=0.133 Sum_probs=10.1
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.++.||+|..+..
T Consensus 3 ~ikkGD~V~Vi~G 15 (104)
T TIGR01079 3 KIKKGDTVKVISG 15 (104)
T ss_pred cccCCCEEEEeEc
Confidence 4678999988765
No 199
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=23.93 E-value=1e+02 Score=14.82 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=11.9
Q ss_pred CCCCCCEEEEecCC
Q psy3510 44 HFKVGDKVFGKPIL 57 (64)
Q Consensus 44 ~~~~Gd~V~~~~~~ 57 (64)
.++.||+|..+++.
T Consensus 72 ~l~dgdev~i~Ppv 85 (88)
T TIGR01687 72 ELKDGDVVAIFPPV 85 (88)
T ss_pred CCCCCCEEEEeCCC
Confidence 58899999988875
No 200
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=23.91 E-value=64 Score=17.15 Aligned_cols=14 Identities=43% Similarity=0.370 Sum_probs=9.1
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
...++||+|+...+
T Consensus 38 ~~mk~GD~vifY~s 51 (143)
T PF01878_consen 38 KRMKPGDKVIFYHS 51 (143)
T ss_dssp HC--TT-EEEEEET
T ss_pred hcCCCCCEEEEEEc
Confidence 35899999999887
No 201
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=23.88 E-value=1.8e+02 Score=18.63 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=19.9
Q ss_pred ccceEEEEEeCC---CC--CCCCCCCEEEEecCC
Q psy3510 29 TEVSGIVEEVGQ---GV--KHFKVGDKVFGKPIL 57 (64)
Q Consensus 29 ~e~~G~V~~vg~---~v--~~~~~Gd~V~~~~~~ 57 (64)
+|.+|..+-+=+ -+ ++.++||.++++.+.
T Consensus 151 yDlaG~~vGvvek~~ii~g~~i~~GDviigl~SS 184 (345)
T COG0150 151 YDLAGFAVGVVEKDEIIDGSKVKEGDVIIGLASS 184 (345)
T ss_pred eeeeeeEEEEEEccccccccccCCCCEEEEecCC
Confidence 777777554332 12 358899999999873
No 202
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=23.83 E-value=80 Score=19.41 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.6
Q ss_pred CCCCCCEEEEecCCCCcccC
Q psy3510 44 HFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 44 ~~~~Gd~V~~~~~~~~G~~a 63 (64)
.+++||+++.... |+|+
T Consensus 339 ~l~~GD~l~~~~~---GAY~ 355 (373)
T cd06828 339 EVEEGDLLAIHDA---GAYG 355 (373)
T ss_pred CCCCCCEEEEeCC---Ccch
Confidence 5899999988776 7775
No 203
>COG3731 SrlB Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]
Probab=23.80 E-value=82 Score=17.02 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=17.8
Q ss_pred EEEEEeCCCCCCCCCCCEEEEecC
Q psy3510 33 GIVEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 33 G~V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
-+|+++|+.|..+.-+..|+.+..
T Consensus 7 srIt~IG~~v~~~led~mlItF~~ 30 (123)
T COG3731 7 SRITRIGPEVADALEDKMLITFRD 30 (123)
T ss_pred EEEEEecHhHHhhhcCCEEEEeCC
Confidence 468888888887777777766654
No 204
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=23.66 E-value=86 Score=17.15 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=11.6
Q ss_pred CCCCCCCCCCEEEEecC
Q psy3510 40 QGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 40 ~~v~~~~~Gd~V~~~~~ 56 (64)
+.+..+++||+|.....
T Consensus 81 prip~l~~GD~V~f~Ge 97 (131)
T PF11948_consen 81 PRIPWLQKGDQVEFYGE 97 (131)
T ss_pred ccCcCcCCCCEEEEEEE
Confidence 34456888998877653
No 205
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.32 E-value=1.1e+02 Score=15.31 Aligned_cols=13 Identities=38% Similarity=0.327 Sum_probs=10.7
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
..+.||+|+.+..
T Consensus 38 ~v~~GdyVLVHvG 50 (82)
T COG0298 38 EVKVGDYVLVHVG 50 (82)
T ss_pred ccccCCEEEEEee
Confidence 5789999998764
No 206
>KOG4589|consensus
Probab=23.29 E-value=70 Score=18.99 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=19.1
Q ss_pred EEEEeCCCCCCCCCCCEEEEecCCCCcccC
Q psy3510 34 IVEEVGQGVKHFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 34 ~V~~vg~~v~~~~~Gd~V~~~~~~~~G~~a 63 (64)
..+++-+.-.-++++|+|+-... ..|+|.
T Consensus 56 KLiEindKy~~l~p~~~VlD~G~-APGsWs 84 (232)
T KOG4589|consen 56 KLIEINDKYRFLRPEDTVLDCGA-APGSWS 84 (232)
T ss_pred hheeehhhccccCCCCEEEEccC-CCChHH
Confidence 45566665556888998876654 357775
No 207
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=23.13 E-value=51 Score=20.81 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.1
Q ss_pred CCCCCCCCCEEEEecC
Q psy3510 41 GVKHFKVGDKVFGKPI 56 (64)
Q Consensus 41 ~v~~~~~Gd~V~~~~~ 56 (64)
+|..+++||+|..+..
T Consensus 344 SV~eLk~GD~vlv~~e 359 (376)
T COG1465 344 SVAELKPGDEVLVYLE 359 (376)
T ss_pred eeEecCCCCEEEEEeh
Confidence 4567999999998875
No 208
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=23.00 E-value=50 Score=16.65 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=7.7
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
..+++||.|+.-..
T Consensus 64 ~~L~VG~~VMvNYN 77 (85)
T PF12148_consen 64 DELKVGQVVMVNYN 77 (85)
T ss_dssp GG--TT-EEEEEE-
T ss_pred HhCCcccEEEEecC
Confidence 35899999988654
No 209
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=22.75 E-value=54 Score=14.65 Aligned_cols=11 Identities=55% Similarity=0.836 Sum_probs=6.9
Q ss_pred CCCCCEEEEec
Q psy3510 45 FKVGDKVFGKP 55 (64)
Q Consensus 45 ~~~Gd~V~~~~ 55 (64)
|.+|++|.+..
T Consensus 1 ~~vG~~v~~~~ 11 (55)
T PF11717_consen 1 FEVGEKVLCKY 11 (55)
T ss_dssp --TTEEEEEEE
T ss_pred CCcCCEEEEEE
Confidence 46788888765
No 210
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=22.66 E-value=73 Score=17.12 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=8.4
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
..|++|++|+++.+
T Consensus 70 ~~f~~g~~VLAlYP 83 (130)
T PF07039_consen 70 AEFPKGTKVLALYP 83 (130)
T ss_dssp GS--TT-EEEEE-T
T ss_pred hhCCCCCEEEEECC
Confidence 35999999999987
No 211
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=22.48 E-value=1.1e+02 Score=14.53 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=12.4
Q ss_pred CCCCCCCEEEEecCC
Q psy3510 43 KHFKVGDKVFGKPIL 57 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~~ 57 (64)
..++.||+|..+++.
T Consensus 63 ~~l~dgDevai~Ppv 77 (80)
T TIGR01682 63 ALLNEGDEVAFIPPV 77 (80)
T ss_pred cCcCCCCEEEEeCCC
Confidence 348999999998875
No 212
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....
Probab=22.25 E-value=81 Score=16.33 Aligned_cols=14 Identities=50% Similarity=0.460 Sum_probs=5.4
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
..|++||.|-....
T Consensus 31 ~~yk~GD~V~I~id 44 (99)
T PF01157_consen 31 QEYKVGDKVDIKID 44 (99)
T ss_dssp ----TT-EEEE---
T ss_pred HHccCCCEEEEEec
Confidence 35899999987765
No 213
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=22.23 E-value=97 Score=14.18 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=10.9
Q ss_pred CCCCCCEEEEecC
Q psy3510 44 HFKVGDKVFGKPI 56 (64)
Q Consensus 44 ~~~~Gd~V~~~~~ 56 (64)
.+++||.++.+..
T Consensus 43 gl~~GD~I~~ing 55 (82)
T cd00992 43 GLRVGDRILEVNG 55 (82)
T ss_pred CCCCCCEEEEECC
Confidence 5999999988764
No 214
>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=22.22 E-value=71 Score=17.07 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=10.7
Q ss_pred CCCCCCCCEEEEec
Q psy3510 42 VKHFKVGDKVFGKP 55 (64)
Q Consensus 42 v~~~~~Gd~V~~~~ 55 (64)
...|.+||.|-...
T Consensus 18 iP~f~~GDtvrv~v 31 (115)
T COG0335 18 IPSFRPGDTVRVHV 31 (115)
T ss_pred CCCCCCCCEEEEEE
Confidence 56799999987654
No 215
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=67 Score=19.15 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=9.9
Q ss_pred CCCCCEEEEecC
Q psy3510 45 FKVGDKVFGKPI 56 (64)
Q Consensus 45 ~~~Gd~V~~~~~ 56 (64)
-++||||+.+..
T Consensus 38 ~~pGdRvlvl~t 49 (255)
T COG3484 38 ELPGDRVLVLCT 49 (255)
T ss_pred cCCCceEEEEEe
Confidence 367999999887
No 216
>CHL00084 rpl19 ribosomal protein L19
Probab=21.78 E-value=75 Score=16.98 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=11.7
Q ss_pred CCCCCCCCCEEEEec
Q psy3510 41 GVKHFKVGDKVFGKP 55 (64)
Q Consensus 41 ~v~~~~~Gd~V~~~~ 55 (64)
+...|++||.|-...
T Consensus 19 ~~p~f~~GDtV~V~~ 33 (117)
T CHL00084 19 NLPKIRVGDTVKVGV 33 (117)
T ss_pred CCCccCCCCEEEEEE
Confidence 556799999987765
No 217
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=21.77 E-value=66 Score=16.22 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=10.9
Q ss_pred CCCCCCEEEEecCC
Q psy3510 44 HFKVGDKVFGKPIL 57 (64)
Q Consensus 44 ~~~~Gd~V~~~~~~ 57 (64)
.++.|++|.+....
T Consensus 68 ~l~~G~~V~v~g~~ 81 (99)
T PF13742_consen 68 DLKDGDKVLVRGRV 81 (99)
T ss_pred CCCCCCEEEEEEEE
Confidence 47889999887753
No 218
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=21.59 E-value=61 Score=15.31 Aligned_cols=15 Identities=33% Similarity=0.146 Sum_probs=9.8
Q ss_pred CCCCCCCCEEEEecC
Q psy3510 42 VKHFKVGDKVFGKPI 56 (64)
Q Consensus 42 v~~~~~Gd~V~~~~~ 56 (64)
...+++||+|-....
T Consensus 40 l~~l~~Gd~V~F~~~ 54 (70)
T PF11604_consen 40 LAGLKPGDKVRFTFE 54 (70)
T ss_dssp ESS-STT-EEEEEEE
T ss_pred hhcCCCCCEEEEEEE
Confidence 457999999987654
No 219
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=20.98 E-value=95 Score=13.40 Aligned_cols=12 Identities=58% Similarity=0.753 Sum_probs=8.8
Q ss_pred CCCCCCEEEEec
Q psy3510 44 HFKVGDKVFGKP 55 (64)
Q Consensus 44 ~~~~Gd~V~~~~ 55 (64)
.+++|+.|++..
T Consensus 2 ~~~~G~~~~a~~ 13 (57)
T smart00333 2 TFKVGDKVAARW 13 (57)
T ss_pred CCCCCCEEEEEe
Confidence 467788887776
No 220
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=20.87 E-value=83 Score=16.73 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=10.2
Q ss_pred CCCCCCCEEEEec
Q psy3510 43 KHFKVGDKVFGKP 55 (64)
Q Consensus 43 ~~~~~Gd~V~~~~ 55 (64)
+.+++||.|+...
T Consensus 75 ~~~qpGDlvff~~ 87 (134)
T TIGR02219 75 DAAQPGDVLVFRW 87 (134)
T ss_pred hcCCCCCEEEEee
Confidence 3589999998753
No 221
>PRK00111 hypothetical protein; Provisional
Probab=20.78 E-value=1.6e+02 Score=16.91 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.3
Q ss_pred CcccCccceEEEEEeCCCCCCCCCCCEE
Q psy3510 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51 (64)
Q Consensus 24 ~~~~G~e~~G~V~~vg~~v~~~~~Gd~V 51 (64)
..-+|.+.+..|.-.|+....++.|.+-
T Consensus 142 Ne~LG~~vV~dIri~GP~~psw~~G~~~ 169 (180)
T PRK00111 142 AEKVGPDIITELRIFGPQAPSWRKGPLH 169 (180)
T ss_pred HHHcCcCceeEEEEECCCCCCCCcCCCc
Confidence 3457888999999999998889999874
No 222
>PRK03298 hypothetical protein; Provisional
Probab=20.68 E-value=1.7e+02 Score=17.49 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=15.5
Q ss_pred EEEeCCCCCCCCCCCEEEEecC
Q psy3510 35 VEEVGQGVKHFKVGDKVFGKPI 56 (64)
Q Consensus 35 V~~vg~~v~~~~~Gd~V~~~~~ 56 (64)
|.-.|..-+.+..|||++.+-+
T Consensus 10 V~Y~GRa~s~L~~~~RLiiiK~ 31 (224)
T PRK03298 10 VDYVGRLTAHLPSARRLLLVKA 31 (224)
T ss_pred EEEccceeccCCCCceEEEEcc
Confidence 4455665667888888887776
No 223
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=20.57 E-value=1.2e+02 Score=14.35 Aligned_cols=16 Identities=25% Similarity=-0.068 Sum_probs=12.1
Q ss_pred CCCCCCCCEEEEecCC
Q psy3510 42 VKHFKVGDKVFGKPIL 57 (64)
Q Consensus 42 v~~~~~Gd~V~~~~~~ 57 (64)
...+++|.+|......
T Consensus 35 ~~~L~~G~kV~V~yd~ 50 (61)
T PF07076_consen 35 FDGLKPGMKVVVFYDE 50 (61)
T ss_pred ccccCCCCEEEEEEEc
Confidence 3458999999887764
No 224
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=20.54 E-value=2e+02 Score=17.70 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=13.6
Q ss_pred CCCCCCEEEEecCCCCcccC
Q psy3510 44 HFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 44 ~~~~Gd~V~~~~~~~~G~~a 63 (64)
.+++||+++.... |+|+
T Consensus 334 ~l~~GD~l~~~~~---GAY~ 350 (368)
T cd06810 334 ELEVGDLLVFEDM---GAYG 350 (368)
T ss_pred CCCCCCEEEEcCC---CCCc
Confidence 5889999988876 7775
No 225
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=20.46 E-value=1.2e+02 Score=16.41 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=17.1
Q ss_pred EEEEEeCCCCC---CCCCCCEEEEecC
Q psy3510 33 GIVEEVGQGVK---HFKVGDKVFGKPI 56 (64)
Q Consensus 33 G~V~~vg~~v~---~~~~Gd~V~~~~~ 56 (64)
--|+|+..+.. +.++||+|-....
T Consensus 96 ~yvLEl~~G~~~~~~i~vGd~v~~~~~ 122 (126)
T COG1430 96 RYVLELPAGWAARLGIKVGDRVEFRPL 122 (126)
T ss_pred cEEEEecCCchhhcCCccCCEEEeccc
Confidence 36777776643 4999999977654
No 226
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=20.33 E-value=1.7e+02 Score=18.05 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=13.2
Q ss_pred CCCCCCEEEEecCCCCcccC
Q psy3510 44 HFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 44 ~~~~Gd~V~~~~~~~~G~~a 63 (64)
.+++||+++.... |+|+
T Consensus 347 ~l~~GD~l~~~~~---GAY~ 363 (382)
T cd06839 347 PLEPGDLVAVLQS---GAYG 363 (382)
T ss_pred CCCCCCEEEEecC---CCcc
Confidence 4789999887776 7774
No 227
>PLN02537 diaminopimelate decarboxylase
Probab=20.30 E-value=2.1e+02 Score=18.08 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=13.4
Q ss_pred CCCCCCEEEEecCCCCcccC
Q psy3510 44 HFKVGDKVFGKPILGKGGYS 63 (64)
Q Consensus 44 ~~~~Gd~V~~~~~~~~G~~a 63 (64)
..++||+++.... |+|+
T Consensus 351 ~~~~GD~l~~~~~---GAY~ 367 (410)
T PLN02537 351 TPPKGAGLVVHDA---GAYC 367 (410)
T ss_pred CCCCCCEEEEeCC---Cccc
Confidence 4789999988876 7764
No 228
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=20.27 E-value=1e+02 Score=13.39 Aligned_cols=28 Identities=32% Similarity=0.261 Sum_probs=17.5
Q ss_pred ccceEEEEEeCCCC-CCCCCCCEEEEecC
Q psy3510 29 TEVSGIVEEVGQGV-KHFKVGDKVFGKPI 56 (64)
Q Consensus 29 ~e~~G~V~~vg~~v-~~~~~Gd~V~~~~~ 56 (64)
..+.|+|.++--.. ...+.||..+-+-.
T Consensus 7 ~~~~G~V~~v~V~~G~~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 7 APVSGRVESVYVKEGQQVKKGDVLLVLDS 35 (50)
T ss_pred CCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence 44678888764322 23778887776643
No 229
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=20.15 E-value=1e+02 Score=15.95 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=10.8
Q ss_pred CCCCCCCEEEEecC
Q psy3510 43 KHFKVGDKVFGKPI 56 (64)
Q Consensus 43 ~~~~~Gd~V~~~~~ 56 (64)
..|++||.|-....
T Consensus 33 ~~y~~Gd~V~I~~d 46 (98)
T PRK04306 33 QEFEEGDKVHIVID 46 (98)
T ss_pred HhccCCCEEEEEec
Confidence 35899999987765
Done!