RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3510
(64 letters)
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 88.0 bits (219), Expect = 5e-23
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
A G+NPVETYIRSG Y P LP G++V+G++E VG FK GD+VF + GG
Sbjct: 66 ACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTIS-GG 124
Query: 62 YSQ 64
Y++
Sbjct: 125 YAE 127
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 87.2 bits (217), Expect = 6e-23
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
INP + +G Y + LP I G E GIVE VG V +G +V P+ G+G
Sbjct: 41 VRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVL--PLRGEGT 98
Query: 62 YSQ 64
+ +
Sbjct: 99 WQE 101
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 85.0 bits (211), Expect = 5e-22
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 2 AAGINPVETYIRSGQYPNLP-DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG---KPIL 57
A+G NP++ IR+G+ P+ LPAILG +++G V VG V F+VGD VFG
Sbjct: 41 ASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGG 100
Query: 58 GKGGYSQ 64
+G ++Q
Sbjct: 101 LQGTHAQ 107
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 82.7 bits (205), Expect = 4e-21
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
AA INP + + G Y LP+LPA+ G E V VG V K GD V G G
Sbjct: 63 AAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANA-GLGT 121
Query: 62 YSQ 64
+
Sbjct: 122 WRT 124
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 80.0 bits (198), Expect = 2e-20
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
A GINPV+ N + G + +G++ +VG V +G +V L + G
Sbjct: 38 AIGINPVDWKFIKANPINWS-NGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHG 96
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 79.6 bits (197), Expect = 4e-20
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 2 AAGINPVETYIRSGQY----PNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
AA +NP++ R+G +LP+ LG + SG V E+G V + +GDKV G
Sbjct: 42 AASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGF 101
Query: 58 GK--GGYSQ 64
Y++
Sbjct: 102 PDHPCCYAE 110
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L;
oxidoreductase; 2.10A {Homo sapiens}
Length = 349
Score = 80.0 bits (198), Expect = 4e-20
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
A G+N ++ +R G N P P + G E SGIVE +G VK +++GD+V +
Sbjct: 39 ACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMA--FVNYNA 96
Query: 62 YSQ 64
+++
Sbjct: 97 WAE 99
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex;
HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 79.2 bits (196), Expect = 6e-20
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV--FGKPILGK 59
A G+N ++TY RSG YP P LP+ LG E +G+VE VG V FKVGD+V P+
Sbjct: 37 AIGLNFIDTYYRSGLYP-APFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPL--- 92
Query: 60 GGYSQ 64
G YS+
Sbjct: 93 GAYSE 97
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 79.2 bits (196), Expect = 8e-20
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
+ +NPV+T R P +LG + G+VE VG V F GD V+ + G
Sbjct: 41 SISVNPVDTKQRLMDVS---KAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNG 97
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 78.9 bits (195), Expect = 1e-19
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
A +NPV+ +R P+ ++G + +GIV VG V F+ GD+VF + + G
Sbjct: 61 AVSVNPVDYKVRRSTPPDGT-DWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPG 119
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 78.4 bits (194), Expect = 1e-19
Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV--FGKPILGK 59
A GIN ++TYIRSG YP P LP+ LGTE +GIV +VG GVKH K GD+V +
Sbjct: 37 AIGINFIDTYIRSGLYP-PPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSAL--- 92
Query: 60 GGYSQ 64
G YS
Sbjct: 93 GAYSS 97
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 77.4 bits (191), Expect = 4e-19
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 2 AAGINPVETYIRSGQYPNL--------------PDLPAILGTEVSGIVEEVGQGVKHFKV 47
AA +NP++ +RSG + P LG +VSG+V E G VK+FK
Sbjct: 59 AASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKP 118
Query: 48 GDKVFGK-PILGKGGYSQ 64
GD+V+ P +G S+
Sbjct: 119 GDEVWAAVPPWKQGTLSE 136
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 77.2 bits (191), Expect = 4e-19
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
A G+N + R G YP D ILG E+SG + VG GV + VGDKV G + G
Sbjct: 64 AIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCG--LANGGA 121
Query: 62 YSQ 64
Y++
Sbjct: 122 YAE 124
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 75.3 bits (186), Expect = 2e-18
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
G+N +E+Y R G YP + P +LG E SG V G+GV +F+VGD+V
Sbjct: 44 YTGVNYIESYFRKGIYP--CEKPYVLGREASGTVVAKGKGVTNFEVGDQV 91
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 74.2 bits (183), Expect = 5e-18
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 2 AAGINPVETYIRSGQYPNLP--DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK 59
A G+N ++TY R+G L + P ++G E + +VEEVG GV F VG++V +
Sbjct: 37 AIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVGERV-CTCLPPL 95
Query: 60 GGYSQ 64
G YSQ
Sbjct: 96 GAYSQ 100
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 74.2 bits (183), Expect = 5e-18
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKV-FGKPILGK 59
A INP + GQY G E G + G VG +V F +
Sbjct: 58 LASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNW 117
Query: 60 GGYSQ 64
G +++
Sbjct: 118 GSWAE 122
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 71.6 bits (176), Expect = 5e-17
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 2 AAGINPVETYIRSGQYPNLPDL---------PAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
+ +NP + G YP+ P A G E V +VG V + GD V
Sbjct: 42 GSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVI 101
Query: 53 GKPILGKGGYSQ 64
+ G +
Sbjct: 102 PSHV-NFGTWRT 112
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 69.9 bits (172), Expect = 2e-16
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
AA +N ++ ++R G LP +LG + SG+V+ VG GV+ F GD+V P L G
Sbjct: 36 AAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCG 94
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 68.8 bits (169), Expect = 4e-16
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
AAG+ + + G+Y + P + G E +G+V +G K GD+V GG
Sbjct: 57 AAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGS-GIKPGDRVMA--FNFIGG 113
Query: 62 YSQ 64
Y++
Sbjct: 114 YAE 116
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 68.4 bits (168), Expect = 7e-16
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKPILGKG 60
A+ +N + R GQY P ILG E SG V E+G G + H+K+GD +L G
Sbjct: 58 ASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMA--LLPGG 115
Query: 61 GYSQ 64
G +Q
Sbjct: 116 GQAQ 119
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily),
rossmann fold, NAD binding, oxidoreductase; HET: NAP;
1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 67.4 bits (165), Expect = 1e-15
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
A INP +T +R A LGT+ +G V VG V H +VGD+V+G
Sbjct: 45 AVAINPSDTSMRGQ----FATPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYG 92
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 64.6 bits (158), Expect = 2e-14
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
A +N + + P + +++SG+VE VG+ V F+ GD+V G
Sbjct: 62 AVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPG 118
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 61.9 bits (151), Expect = 1e-13
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKVGDKVFGKPILGKG 60
G+N + +G+Y P +G E G V +G + VG V + G
Sbjct: 62 FVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAY---MAPG 118
Query: 61 GYSQ 64
+++
Sbjct: 119 SFAE 122
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 58.4 bits (141), Expect = 2e-12
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 30/91 (32%)
Query: 2 AAGINPVETYIRSGQYP----------------------------NLPDLPAILGTEVSG 33
A+ +NP + + G D +G E +G
Sbjct: 41 ASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAG 100
Query: 34 IVEEVGQGVKHFKVGDKVFGKPILGKGGYSQ 64
+V E G + K +G YSQ
Sbjct: 101 VVVEAGSSPAAQALMGKTVA--AIGGAMYSQ 129
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 56.0 bits (136), Expect = 2e-11
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
Y SG P P ILG +GIVE VG+GV K GD V
Sbjct: 49 YTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKLKAGDTV 88
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 55.6 bits (135), Expect = 2e-11
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
+R +YP LPA+LG E SGI+E +G V +VGD V
Sbjct: 49 IVRDQKYP--VPLPAVLGHEGSGIIEAIGPNVTELQVGDHV 87
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 55.2 bits (133), Expect = 4e-11
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 1 MAAGINPVETYIRSGQY-----------------PNLPDLPAILGTEVSGIVEEVGQGVK 43
MA+ IN + + +LG++ SG+V G GV+
Sbjct: 70 MASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVR 129
Query: 44 HFKVGDKVFGKPILGKG 60
+K GD V P
Sbjct: 130 RWKPGDHVIVHPAHVDE 146
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 54.5 bits (132), Expect = 5e-11
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
+ P +LG E +GIVE VG GV +FK GDKV
Sbjct: 51 NATDPKKK--ALFPVVLGHECAGIVESVGPGVTNFKPGDKV 89
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal
coordination, NAD, zinc, inhibition, acetylation,
metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP:
b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A*
1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A*
1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A*
3bto_A* 4dwv_A* ...
Length = 374
Score = 53.8 bits (130), Expect = 1e-10
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
++ SG LP I G E +GIVE +G+GV + GDKV
Sbjct: 51 HVVSGTLV--TPLPVIAGHEAAGIVESIGEGVTTVRPGDKV 89
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 54.0 bits (130), Expect = 1e-10
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
AAG+N + I G YP A LG+E +G+V E G GV GD+V G +
Sbjct: 247 AAGVNFRDALIALGMYPG----VASLGSEGAGVVVETGPGVTGLAPGDRVMG---MIPKA 299
Query: 62 YS 63
+
Sbjct: 300 FG 301
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A
{Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 53.8 bits (130), Expect = 1e-10
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
+ P P ILG E G+VE +G GV K GDKV
Sbjct: 52 SVLKEIIP--SKFPVILGHEAVGVVESIGAGVTCVKPGDKV 90
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 53.0 bits (128), Expect = 2e-10
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 12 IRSGQYPNL--PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
+ G + L P LP LG E G +EEV +GV+ + GD V P +
Sbjct: 60 LVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVT 108
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 51.7 bits (124), Expect = 6e-10
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 1 MAAGIN----------------PVETYIRSGQYPNLPDLP-AILGTEVSGIVEEVGQGVK 43
MA+ +N +E Y R DLP ++G++++G+V G GV
Sbjct: 78 MASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVN 137
Query: 44 HFKVGDKV 51
++ GD+V
Sbjct: 138 AWQAGDEV 145
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 51.1 bits (123), Expect = 9e-10
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
P LG E GIV E G V+ G ++ G P +
Sbjct: 76 PVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNI 109
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 51.1 bits (123), Expect = 9e-10
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
Y P +LG E +GIVE VG GV F+ G+KV
Sbjct: 51 YHLFEGKHKDG-FPVVLGHEGAGIVESVGPGVTEFQPGEKV 90
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A*
1nto_A 1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 51.1 bits (123), Expect = 1e-09
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 13 RSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
LP LG E++G +EEVG V + GD V P G
Sbjct: 52 LRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQG 97
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 50.7 bits (122), Expect = 1e-09
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 12 IRSGQYPNLPD-LPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
+ LP LG E G V E+G+GV F VGD V G
Sbjct: 44 VMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWG 91
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 50.7 bits (122), Expect = 1e-09
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 22 DLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
P LG E SG ++ VG GV GD V P+L
Sbjct: 52 YYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLL 87
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus
horikoshii OT3, structural genomics; HET: NAD; 2.05A
{Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 49.9 bits (120), Expect = 2e-09
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
P I+G EV+G V E+G GV+ +VGD V + +
Sbjct: 62 PQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHI 95
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 49.2 bits (118), Expect = 4e-09
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH-----FKVGDKV 51
++ G+ P +P LP ILG E +G V EV + K GD +
Sbjct: 60 HMFRGEDPRVP-LPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLI 104
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 48.8 bits (117), Expect = 5e-09
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
+LG E +G V V VK KVGD+V
Sbjct: 73 DHVLGHESAGEVIAVHPSVKSIKVGDRV 100
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 48.7 bits (117), Expect = 5e-09
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
A G+N + +R G Y P I G EV G+V G + ++ +GG
Sbjct: 34 AVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EGRRYAA--LVPQGG 80
Query: 62 YSQ 64
++
Sbjct: 81 LAE 83
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 48.4 bits (116), Expect = 7e-09
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
P ++G E SG V +VG+ VKH K GD+V
Sbjct: 61 PMVIGHEASGTVVKVGKNVKHLKKGDRV 88
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 48.7 bits (117), Expect = 7e-09
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPIL 57
P + G E SG+VE VG GV+ +VGD V + +
Sbjct: 58 PLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHI 91
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD;
1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 48.4 bits (116), Expect = 8e-09
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
P +LG E SG VE+VG VKH K GD+V
Sbjct: 64 PMVLGHEASGTVEKVGSSVKHLKPGDRV 91
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc,
tetramer; 2.35A {Geobacillus stearothermophilus} SCOP:
b.35.1.2 c.2.1.1 PDB: 3pii_A
Length = 339
Score = 46.0 bits (110), Expect = 6e-08
Identities = 23/37 (62%), Positives = 25/37 (67%)
Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
G +P P LP I G E GIVEEVG GV H KVGD+V
Sbjct: 47 GDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV 83
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 46.0 bits (110), Expect = 7e-08
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
G +P P LP I G E G V VG GV K GD+V
Sbjct: 49 GDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRV 85
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 45.7 bits (109), Expect = 8e-08
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 12 IRSGQYPNLPD-LPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
+ G LP ILG E +G + EVG+ + K GD V G
Sbjct: 47 VWKGVEAKQGFRLPIILGHENAGTIVEVGE-LAKVKKGDNVVVYATWG 93
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 45.2 bits (108), Expect = 1e-07
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 15 GQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
G +P LP + G E +G+V +G+ VK +K+GD
Sbjct: 52 GDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYA 88
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 44.7 bits (106), Expect = 2e-07
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 17 YPNLPDLPAILGTEVSGIVEEVGQGV------KHFKVGDKVFGKPIL 57
YP L P LG E SG+V E G K F++G+ V + +L
Sbjct: 85 YPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEML 131
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 44.1 bits (105), Expect = 3e-07
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
P + G E+ G V VG V+ + GD V
Sbjct: 77 PCVPGHEIVGRVVAVGDQVEKYAPGDLV 104
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin
biosynthesis, metal-binding, NADP, oxidoreductase,
zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 43.3 bits (103), Expect = 4e-07
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
P + G EV G V EVG V F VGD V
Sbjct: 64 PMVPGHEVVGEVVEVGSDVSKFTVGDIV 91
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 43.3 bits (103), Expect = 5e-07
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
P I G E++GI++EVG+GVK FK+GD V
Sbjct: 59 PMIPGHEIAGIIKEVGKGVKKFKIGDVV 86
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 43.3 bits (103), Expect = 5e-07
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
ILG E G V EVG VK FK GD+V
Sbjct: 56 ILGHEAVGEVVEVGSEVKDFKPGDRV 81
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 42.6 bits (101), Expect = 8e-07
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
+LG E++G V E G+ V++ ++GD V
Sbjct: 64 VLGHEITGEVIEKGRDVENLQIGDLV 89
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 42.6 bits (101), Expect = 1e-06
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 26 ILGTEVSGIVEEVGQGVKHFKVGDKV 51
+LG E++G V E G V+ +GD V
Sbjct: 63 VLGHEITGEVVEKGSDVELMDIGDLV 88
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol,
oxidoreductase, zinc-dependent, plant DE biosynthesis,
substrate inhibition; HET: NAP; 1.65A {Populus
tremuloides} PDB: 1yqx_A*
Length = 366
Score = 40.6 bits (96), Expect = 4e-06
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKV 51
P + G E+ G V EVG VK VGDKV
Sbjct: 71 PLVPGHEIVGEVTEVGSKVKKVNVGDKV 98
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 40.4 bits (95), Expect = 6e-06
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVFGKP 55
+LG E G+V + + GD V
Sbjct: 58 HLVLGHEAVGVVVDPN--DTELEEGDIVVPTV 87
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 38.9 bits (91), Expect = 2e-05
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 21 PDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILG 58
+LG E G+VEE G F GD V G
Sbjct: 58 GKDFLVLGHEAIGVVEESYHG---FSQGDLVMPVNRRG 92
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 36.4 bits (84), Expect = 2e-04
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFG 53
+N + + +G+ +I G ++ + G +V G
Sbjct: 1568 YTSLNFRDVMLATGKLSP----DSIPGKWLTRDCMLGMEFSGRDASGRRVMG 1615
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology,
NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A
{Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB:
1ps0_A* 1q1n_A
Length = 360
Score = 34.8 bits (81), Expect = 6e-04
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 24 PAILGTEVSGIVEEVGQGV-KHFKVGDKV 51
P ++G E+ G V ++G KVG +V
Sbjct: 63 PLVVGHEIVGKVVKLGPKSNSGLKVGQRV 91
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 26.9 bits (60), Expect = 0.31
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 21 PDLPAILGTEVSGIVEEVGQGVKHFKVGDKV 51
+G +VSG ++ + +GDKV
Sbjct: 28 ALRKVDVGAQVSGQLKTL-----SVAIGDKV 53
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 26.3 bits (58), Expect = 0.54
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
Query: 27 LGTEVSGIVEEVGQGVKHFKVGDKV 51
+G +VSG + ++ + K+G +V
Sbjct: 35 VGAQVSGKITKL-----YVKLGQQV 54
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein
translocase, cell membrane, cell outer fimbrium,
transmembrane, transport; 3.15A {Escherichia coli} PDB:
2vqi_A*
Length = 493
Score = 24.5 bits (53), Expect = 2.7
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 9 ETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 47
++ + +G + ++ DL + + + V E K F+V
Sbjct: 142 DSMVPAGPF-SIQDLDSSVRGRLDVEVIEQNGRKKTFQV 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 3.1
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 24 PAILGTEVSGIVEEVGQGVKHFKVGDKVF-GKPILGKGGYS 63
PA+ E + E++ K D F G LG+ Y+
Sbjct: 1734 PALTLMEKA-AFEDLKS--KGLIPADATFAGHS-LGE--YA 1768
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for
structural genomics of infec diseases, csgid,
double-PSI beta barrel; HET: MSE; 1.55A {Francisella
tularensis subsp}
Length = 114
Score = 24.0 bits (52), Expect = 3.4
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 25 AILGTEVSGIVEEVGQGVKHFKVGDKV 51
I G S + G + ++GD++
Sbjct: 62 VIKGEPNSKTIALNGPAARRCEIGDQL 88
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl
group, riken structural genomics/proteomi initiative,
RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Length = 96
Score = 23.6 bits (51), Expect = 4.6
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 25 AILGTEVSGIVEEVGQGVKHFKVGDKV 51
A+ G SG++ G K GD V
Sbjct: 35 ALPGERGSGVIGINGAAAHLVKPGDLV 61
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel,
lyase, zymogen, pantothenate biosynthesis, pyruvate;
2.99A {Mycobacterium tuberculosis}
Length = 139
Score = 23.7 bits (51), Expect = 4.7
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 25 AILGTEVSGIVEEVGQGVKHFKVGDKV 51
AI G SG++ G GD V
Sbjct: 59 AITGERGSGVIGINGAAAHLVHPGDLV 85
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase,
protein SELF-processing; 1.29A {Escherichia coli} SCOP:
b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A
1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Length = 143
Score = 23.3 bits (50), Expect = 5.5
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 25 AILGTEVSGIVEEVGQGVKHFKVGDKV 51
AI S I+ G VGD V
Sbjct: 76 AIAAERGSRIISVNGAAAHCASVGDIV 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.141 0.415
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,041,974
Number of extensions: 51005
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 73
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)