RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3510
(64 letters)
>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 175
Score = 34.9 bits (79), Expect = 2e-04
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKGG 61
A+G+ + + G +P P LP I G E G V VG GV K GD+V + G
Sbjct: 39 ASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACG 98
>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol
dehydrogenase) {Silverleaf whitefly (Bemisia
argentifolii) [TaxId: 77855]}
Length = 178
Score = 33.4 bits (75), Expect = 5e-04
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 2 AAGINPVETYIRSG--QYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGK 59
GI + + + P ++G E SG V +VG+ VKH K GD+V +P +
Sbjct: 34 YVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPC 93
Query: 60 GGY 62
Sbjct: 94 RRC 96
>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 171
Score = 29.2 bits (64), Expect = 0.018
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 1 MAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
A G+ + + G +P P LP I G E GIVEEVG GV H KVGD+V +
Sbjct: 33 KACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSAC 92
Query: 61 GY 62
G+
Sbjct: 93 GH 94
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 80
Score = 26.6 bits (59), Expect = 0.085
Identities = 3/27 (11%), Positives = 13/27 (48%)
Query: 34 IVEEVGQGVKHFKVGDKVFGKPILGKG 60
+ + + +K + + +F + +L +
Sbjct: 7 VAQRITTELKRYSIPQAIFAQRVLCRS 33
>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 26.6 bits (57), Expect = 0.15
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 2 AAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVG 48
A G+NPVETYIRSG Y P LP G++V+G++E VG FK G
Sbjct: 39 ACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKG 85
>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 177
Score = 25.7 bits (55), Expect = 0.34
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 2 AAGINPVETYIRSGQYPNLPD-------LPAILGTEVSGIVEEVGQGVKHFKVGDKVF 52
AAG+ + ++R G++ NL LP LG E++G +EEVG V + GD V
Sbjct: 34 AAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVA 91
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 24.4 bits (53), Expect = 0.77
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 24 PAILGTEV--SGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
P ++ + I +V + + +G +VFG +LG
Sbjct: 2 PGAEEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLS 40
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 23.7 bits (51), Expect = 1.6
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 14 SGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGDKVFGKPILGKG 60
SGQY + + T + +V + + + ++FG+ +LG
Sbjct: 6 SGQY--ELYMYREVDTLE--LTRQVKEKLAKNGICQRIFGEKVLGLS 48
>d1xdpa2 d.322.1.2 (A:107-314) Polyphosphate kinase, PPK
{Escherichia coli [TaxId: 562]}
Length = 208
Score = 23.8 bits (51), Expect = 1.9
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 4 GINPVETYIRSGQYPNLPDL 23
I+ ++ + G+Y N D
Sbjct: 175 TISRYDSIVPGGRYHNFKDF 194
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 23.4 bits (50), Expect = 2.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 43 KHFKVGDKVFGK 54
K +K GD VF K
Sbjct: 8 KEYKCGDLVFAK 19
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 21.9 bits (47), Expect = 4.1
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 43 KHFKVGDKVFGKPILGK 59
K+FK+GD V K I G+
Sbjct: 9 KYFKMGDHV--KVIAGR 23
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 137
Score = 22.3 bits (47), Expect = 4.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 43 KHFKVGDKVFGK 54
K F +GD V+GK
Sbjct: 7 KEFGIGDLVWGK 18
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Cellulomonas sp. [TaxId: 40001]}
Length = 266
Score = 22.3 bits (47), Expect = 5.9
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 11 YIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVGD 49
+I D+ +LG+ G E +G+ V +
Sbjct: 20 HIAQATGVEGHDMALVLGSGWGGAAELLGEVVAEVPTHE 58
>d1ppya_ b.52.2.1 (A:) Pyruvoyl dependent aspartate decarboxylase,
ADC {Escherichia coli [TaxId: 562]}
Length = 118
Score = 21.9 bits (47), Expect = 7.8
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 25 AILGTEVSGIVEEVGQGVKHFKVGDKV 51
AI S I+ G VGD V
Sbjct: 59 AIAAERGSRIISVNGAAAHCASVGDIV 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.141 0.415
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 250,925
Number of extensions: 9630
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 15
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)