BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3511
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 1 MLAVQCKRWGEPRVLEL-TTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
M AV+ +G P VL+L + + P P D +VL+KV A G+NPVETYIRSG Y P LP
Sbjct: 30 MRAVRVFEFGGPEVLKLRSDIAVPIPK-DHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 88
Query: 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
G++V+G++E VG FK + V +S +
Sbjct: 89 YTPGSDVAGVIEAVGDNASAFKKGDRVFTSST 120
>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
pdb|1QOR|B Chain B, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
Length = 327
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 4 VQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILG 63
++ + G P VL+ P ++E+ V+ A GIN ++TYIRSG YP P LP+ LG
Sbjct: 5 IEFHKHGGPEVLQAVEFTPADPA-ENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLG 62
Query: 64 TEVSGIVEEVGQGVKHFKVKNIVRSSKS 91
TE +GIV +VG GVKH K + V ++S
Sbjct: 63 TEAAGIVSKVGSGVKHIKAGDRVVYAQS 90
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 4 VQCKRWGEPRVLELTTVD--KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAI 61
+Q G P VLE + PGP V+V+ A G+N ++TY RSG YP P LP+
Sbjct: 5 IQFSTVGGPEVLEYVDFEPEAPGP---QAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSG 60
Query: 62 LGTEVSGIVEEVGQGVKHFKVKNIV 86
LG E +G+VE VG V FKV + V
Sbjct: 61 LGAEGAGVVEAVGDEVTRFKVGDRV 85
>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
Tp53i3,Pig3)
Length = 354
Score = 53.9 bits (128), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
MLAV + G P L + V KP P + EVL+KV A+ +N + R GQY P
Sbjct: 23 MLAVHFDKPGGPENLYVKEVAKPSPG-EGEVLLKVAASALNRADLMQRQGQYDPPPGASN 81
Query: 61 ILGTEVSGIVEEVGQGVK-HFKV 82
ILG E SG V E+G G + H+K+
Sbjct: 82 ILGLEASGHVAELGPGCQGHWKI 104
>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|B Chain B, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|C Chain C, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|D Chain D, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|E Chain E, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
Length = 338
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
MLAV + G P L + V KP P + EVL+KV A+ +N + R GQY P
Sbjct: 7 MLAVHFDKPGGPENLYVKEVAKPSPG-EGEVLLKVAASALNRADLMQRQGQYDPPPGASN 65
Query: 61 ILGTEVSGIVEEVGQGVK-HFKV 82
ILG E SG V E+G G + H+K+
Sbjct: 66 ILGLEASGHVAELGPGCQGHWKI 88
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A +++ EP L++ V+KP EVLV++ A G+ + + G +P P LP
Sbjct: 1 MKAAVVEQFKEP--LKIKEVEKPTISYG-EVLVRIKACGVCHTDLHAAHGDWPVKPKLPL 57
Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
I G E GIVEEVG GV H KV + V
Sbjct: 58 IPGHEGVGIVEEVGPGVTHLKVGDRV 83
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A +++ EP L++ V+KP EVLV++ A G+ + + G +P P LP
Sbjct: 1 MKAAVVEQFKEP--LKIKEVEKPTISYG-EVLVRIKACGVCHTDLHAAHGDWPVKPKLPL 57
Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIV 86
I G E GIVEEVG GV H KV + V
Sbjct: 58 IPGHEGVGIVEEVGPGVTHLKVGDRV 83
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 1 MLAVQCKRWGEPRVLELTT--VDKPGPCLDDEVLVKVMAAGINPVETYIRSG-QYPNLPD 57
M AV + G P VLE+ V +PGP EV V++ AA +N ++ ++R G P LP
Sbjct: 1 MRAVVMRARGGPEVLEVADLPVPEPGP---KEVRVRLKAAALNHLDVWVRKGVASPKLP- 56
Query: 58 LPAILGTEVSGIVEEVGQGVKHF 80
LP +LG + SG+V+ VG GV+ F
Sbjct: 57 LPHVLGADGSGVVDAVGPGVEGF 79
>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase
Superfamily Protein From Novosphingobium
Aromaticivorans
pdb|3GAZ|B Chain B, Crystal Structure Of An Alcohol Dehydrogenase
Superfamily Protein From Novosphingobium
Aromaticivorans
Length = 343
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 12 PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD-LPAILGTEVSGIV 70
P VL +P P +VLV++ A+G NP++ IR+G+ P+ LPAILG +++G V
Sbjct: 19 PFVLRKLARPQPAP---GQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGXDLAGTV 75
Query: 71 EEVGQGVKHFKVKNIV 86
VG V F+V + V
Sbjct: 76 VAVGPEVDSFRVGDAV 91
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 21 DKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
D P P + ++E+L+K G+N +E+Y R G YP + P +LG E SG V G+GV +
Sbjct: 27 DYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC--EKPYVLGREASGTVVAKGKGVTN 84
Query: 80 FKVKNIV 86
F+V + V
Sbjct: 85 FEVGDQV 91
>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From
Acinetobacter Calcoaceticus
Length = 371
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 29 DEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
DEVLVKV+A G+ + +R +YP +P LPA+LG E SGI+E +G V +V + V
Sbjct: 32 DEVLVKVVATGMCHTDLIVRDQKYP-VP-LPAVLGHEGSGIIEAIGPNVTELQVGDHV 87
>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|E Chain E, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|H Chain H, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
Length = 347
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKP-GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--- 56
M AV+ G+P L+ V KP GP +VL+KV AAG+ + ++R G++ NL
Sbjct: 1 MRAVRLVEIGKPLSLQEIGVPKPKGP----QVLIKVEAAGVCHSDVHMRQGRFGNLRIVE 56
Query: 57 ----DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
LP LG E++G +EEVG V + ++V
Sbjct: 57 DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV 90
>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
pdb|1R37|B Chain B, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
Length = 347
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKP-GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--- 56
M AV+ G+P L+ V KP GP +VL+KV AAG+ + ++R G++ NL
Sbjct: 1 MRAVRLVEIGKPLSLQEIGVPKPKGP----QVLIKVEAAGVCHSDVHMRQGRFGNLRIVE 56
Query: 57 ----DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
LP LG E++G +EEVG V + ++V
Sbjct: 57 DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV 90
>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|B Chain B, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|C Chain C, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|D Chain D, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|E Chain E, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|H Chain H, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NVG|A Chain A, N249y Mutant Of The Alcohol Dehydrogenase From The
Archaeon Sulfolobus Solfataricus-tetragonal Crystal
Form
Length = 347
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKP-GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--- 56
M AV+ G+P L+ V KP GP +VL+KV AAG+ + ++R G++ NL
Sbjct: 1 MRAVRLVEIGKPLSLQEIGVPKPKGP----QVLIKVEAAGVCHSDVHMRQGRFGNLRIVE 56
Query: 57 ----DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
LP LG E++G +EEVG V + ++V
Sbjct: 57 DLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV 90
>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|B Chain B, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|C Chain C, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|D Chain D, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
Length = 365
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A + +G+P ++ + +PGP ++ V + A+G+ + + G +P P+ P
Sbjct: 26 MKAAVVRAFGKPLTIDEVPIPQPGP---GQIQVAIQASGVCHTDLHAAEGDWPVKPNPPF 82
Query: 61 ILGTEVSGIVEEVGQGVKHFK 81
I G E G V VG GVKH K
Sbjct: 83 IPGHEGVGFVSAVGSGVKHVK 103
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M AV +G L L P P D E+ ++V A G+N ++ +R G N P P
Sbjct: 4 MRAVVLAGFGGLNKLRLFRKAMPEP-QDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPL 62
Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNIVRS 88
+ G E SGIVE +G VK +++ + V +
Sbjct: 63 VPGFECSGIVEALGDSVKGYEIGDRVMA 90
>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella
Burnetii
Length = 321
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 3 AVQCKRWGEPRVLELTTVDKPGP-CLDDEVLVKVMAAGINPVETYIRSG------QYPNL 55
A+Q ++G P+VL+L VD P P ++ L+KV AA +NP++ R+G + N
Sbjct: 9 AIQFDQFGPPKVLKL--VDTPTPEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLKN- 65
Query: 56 PDLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
+LP+ LG + SG V E+G V + + + V
Sbjct: 66 -NLPSGLGYDFSGEVIELGSDVNNVNIGDKV 95
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A + +G P ++ V +PGP +V VK+ A+G+ + + G +P P LP
Sbjct: 3 MKAAVVRAFGAPLTIDEVPVPQPGP---GQVQVKIEASGVCHTDLHAADGDWPVKPTLPF 59
Query: 61 ILGTEVSGIVEEVGQGVKHFK 81
I G E G V VG GV K
Sbjct: 60 IPGHEGVGYVSAVGSGVSRVK 80
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A +G P +E V PGP +VLVK+ A+G+ + + G +P P LP
Sbjct: 7 MKAAVVHAYGAPLRIEEVKVPLPGP---GQVLVKIEASGVCHTDLHAAEGDWPVKPPLPF 63
Query: 61 ILGTEVSGIVEEVGQGVKHFK 81
I G E G V VG GV K
Sbjct: 64 IPGHEGVGYVAAVGSGVTRVK 84
>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
pdb|2VN8|B Chain B, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
Length = 375
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 2 LAVQCKRWGEPRVLELT-TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL----- 55
+A ++G+ VL T + P +EV+VKV AA +NP++ +RSG
Sbjct: 23 MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82
Query: 56 ---------PDLPAILGTEVSGIVEEVGQGVKHFK 81
+ P LG +VSG+V E G VK+FK
Sbjct: 83 DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFK 117
>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus
Solfataricus
Length = 347
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 3 AVQCKRWGEPRVLELTTVDKP-GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP----- 56
AV+ G+P L+ V KP GP +VL+KV AAG+ + + R G++ NL
Sbjct: 3 AVRLVEIGKPLSLQEIGVPKPKGP----QVLIKVEAAGVCHSDVHXRQGRFGNLRIVEDL 58
Query: 57 --DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
LP LG E++G +EEVG V + ++V
Sbjct: 59 GVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLV 90
>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
pdb|2EER|B Chain B, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
Length = 347
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP---- 56
M A++ G+P LE + KP +VL+K+ AAG+ + ++R G++ NL
Sbjct: 1 MRAMRLVEIGKPLKLEDIPIPKPK---GSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVED 57
Query: 57 ---DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
LP LG E++G +EEVG V + ++V
Sbjct: 58 LGVKLPVTLGHEIAGRIEEVGDEVVGYSKGDLV 90
>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding
Dehydrogenase (Target Psi-012003) From Sinorhizobium
Meliloti 1021
pdb|4EJM|A Chain A, Crystal Structure Of A Putative Zinc-Binding
Dehydrogenase (Target Psi-012003) From Sinorhizobium
Meliloti 1021 Bound To Nadp
Length = 370
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 20 VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK 78
+ +PGP D++LVKV A GI + ++ G++P+ P P LG E GIV E G V+
Sbjct: 42 IPEPGP---DDLLVKVEACGICGTDRHLLHGEFPSTP--PVTLGHEFCGIVVEAGSAVR 95
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 11/62 (17%)
Query: 30 EVLVKVMAAGI-----NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKN 84
+VL+ ++ AGI + + + G YP +P G E++GI++EVG+GVK FK+ +
Sbjct: 31 DVLIDILYAGICHSDIHSAYSEWKEGIYPMIP------GHEIAGIIKEVGKGVKKFKIGD 84
Query: 85 IV 86
+V
Sbjct: 85 VV 86
>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
pdb|4DUP|B Chain B, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
Length = 353
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 4 VQCKRWGEPRVLELTTVDKPGPCLDD-EVLVKVMAAGINPVETYIRSGQYPNLPDLPAIL 62
V K +G P V + +P P + EVLV+ A G+N + R G YP D IL
Sbjct: 32 VDLKSFGGPDVXVIGK--RPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89
Query: 63 GTEVSGIVEEVGQGVKHFKVKNIV 86
G E+SG + VG GV + V + V
Sbjct: 90 GLELSGEIVGVGPGVSGYAVGDKV 113
>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With
N6022
pdb|3QJ5|B Chain B, S-Nitrosoglutathione Reductase (Gsnor) In Complex With
N6022
Length = 374
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 4 VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
++CK W G+P +E V P EV +K++A + + Y SG P
Sbjct: 6 IKCKAAVAWEAGKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPE-GCF 61
Query: 59 PAILGTEVSGIVEEVGQGVKHFKVKNIV 86
P ILG E +GIVE VG+GV K + V
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTV 89
>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione- Dependent Formaldehyde Dehydrogenase)
pdb|1TEH|B Chain B, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione- Dependent Formaldehyde Dehydrogenase)
pdb|1M6H|A Chain A, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6H|B Chain B, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6W|A Chain A, Binary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase And 12-Hydroxydodecanoic
Acid
pdb|1M6W|B Chain B, Binary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase And 12-Hydroxydodecanoic
Acid
pdb|1MA0|A Chain A, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic
Acid
pdb|1MA0|B Chain B, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic
Acid
pdb|1MP0|A Chain A, Binary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad(H)
pdb|1MP0|B Chain B, Binary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad(H)
pdb|2FZE|A Chain A, Crystal Structure Of The Binary Complex Of Human
Glutathione-Dependent Formaldehyde Dehydrogenase With
Adp- Ribose
pdb|2FZE|B Chain B, Crystal Structure Of The Binary Complex Of Human
Glutathione-Dependent Formaldehyde Dehydrogenase With
Adp- Ribose
Length = 373
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 4 VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
++CK W G+P +E V P EV +K++A + + Y SG P
Sbjct: 5 IKCKAAVAWEAGKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPE-GCF 60
Query: 59 PAILGTEVSGIVEEVGQGVKHFKVKNIV 86
P ILG E +GIVE VG+GV K + V
Sbjct: 61 PVILGHEGAGIVESVGEGVTKLKAGDTV 88
>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With
S-(Hydroxymethyl)glutathione And Nadh
pdb|1MC5|B Chain B, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With
S-(Hydroxymethyl)glutathione And Nadh
Length = 374
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 4 VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
++CK W G+P +E V P EV +K++A + + Y SG P
Sbjct: 6 IKCKAAVAWEAGKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPE-GCF 61
Query: 59 PAILGTEVSGIVEEVGQGVKHFKVKNIV 86
P ILG E +GIVE VG+GV K + V
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTV 89
>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense
pdb|1HT0|B Chain B, Human Gamma-2 Alcohol Dehydrogense
pdb|1U3W|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase
Gamma-2- Gamma-2 Isoform Complexed With
N-1-Methylheptylformamide Determined To 1.45 Angstrom
Resolution
pdb|1U3W|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase
Gamma-2- Gamma-2 Isoform Complexed With
N-1-Methylheptylformamide Determined To 1.45 Angstrom
Resolution
Length = 374
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
EV +K++AAGI + ++ SG + LP ILG E +GIVE VG+GV K
Sbjct: 35 EVRIKMVAAGICRSDEHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84
>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3E|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3I|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
And Inhibitor
pdb|1E3I|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
And Inhibitor
Length = 376
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 4 VQCK-----RWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
++CK + G P +E V P C EV ++V+A + P + + L
Sbjct: 7 IKCKAAIAWKTGSPLCIEEIEVSPPKAC---EVRIQVIATCVCPTDINATDPKKKAL--F 61
Query: 59 PAILGTEVSGIVEEVGQGVKHFK 81
P +LG E +GIVE VG GV +FK
Sbjct: 62 PVVLGHECAGIVESVGPGVTNFK 84
>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase
From Bacillus Thuringiensis
Length = 340
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 4 VQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILG 63
+Q ++G P+ + P D+EV V+++ INP + +G Y + LP I G
Sbjct: 8 IQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPG 67
Query: 64 TEVSGIVEEVGQGV 77
E GIVE VG V
Sbjct: 68 YEGVGIVENVGAFV 81
>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
pdb|3FBG|B Chain B, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
Length = 346
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 20 VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
+D P P + E+LVK+ + +NPV+T R ++ P +LG + G+VE VG V
Sbjct: 25 LDIPEPKVH-EILVKIQSISVNPVDTKQR---LMDVSKAPRVLGFDAIGVVESVGNEVTM 80
Query: 80 FKVKNIVRSSKS 91
F +IV S S
Sbjct: 81 FNQGDIVYYSGS 92
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 1 MLAVQCKRWG-EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN---LP 56
M AV K+ G + V E V PGP +V ++ A G+N ++TY R+G P+ +
Sbjct: 3 MAAVIHKKGGPDNFVWEEVKVGSPGP---GQVRLRNTAIGVNFLDTYHRAG-IPHPLVVG 58
Query: 57 DLPAILGTEVSGIVEEVGQGVKHFKV 82
+ P ++G E + +VEEVG GV F V
Sbjct: 59 EPPIVVGFEAAAVVEEVGPGVTDFTV 84
>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDY|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
EV +K++A GI + ++ SG + LP ILG E +GIVE VG+GV K
Sbjct: 35 EVRIKMVAVGICHTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme)
Complexed With Nicotinamide Adenine Dinucleotide (Nad),
And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme)
Complexed With Nicotinamide Adenine Dinucleotide (Nad),
And Zinc
Length = 374
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 4 VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETY-IRSGQYPNLPD 57
++CK W +P V+E VD P +E+ +K++A G+ + Y + G++ +
Sbjct: 7 IKCKAAVAWEANKPLVIEEIEVDVPHA---NEIRIKIIATGVCHTDLYHLFEGKHKD--G 61
Query: 58 LPAILGTEVSGIVEEVGQGVKHFK 81
P +LG E +GIVE VG GV F+
Sbjct: 62 FPVVLGHEGAGIVESVGPGVTEFQ 85
>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
pdb|1HTB|B Chain B, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
Length = 374
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
EV +K++A GI + ++ SG + LP ILG E +GIVE VG+GV K
Sbjct: 35 EVRIKMVAVGICRTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84
>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDZ|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
EV +K++A GI + ++ SG + LP ILG E +GIVE VG+GV K
Sbjct: 35 EVRIKMVAVGICGTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84
>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDX|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|3HUD|A Chain A, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|3HUD|B Chain B, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|1DEH|A Chain A, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1DEH|B Chain B, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1HSZ|A Chain A, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1HSZ|B Chain B, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1U3U|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3U|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3V|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
pdb|1U3V|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
Length = 374
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
EV +K++A GI + ++ SG + LP ILG E +GIVE VG+GV K
Sbjct: 35 EVRIKMVAVGICRTDDHVVSGNL--VTPLPVILGHEAAGIVESVGEGVTTVK 84
>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|B Chain B, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|C Chain C, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|D Chain D, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|3JV7|A Chain A, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|B Chain B, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|C Chain C, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|D Chain D, Structure Of Adh-A From Rhodococcus Ruber
Length = 345
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 1 MLAVQCKRWG-EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIR---SGQYPNLP 56
M AVQ G EP V+++ T PGP E+L+KV AAG+ + ++ + QY
Sbjct: 1 MKAVQYTEIGSEPVVVDIPT-PTPGP---GEILLKVTAAGLCHSDIFVMDMPAAQYAY-- 54
Query: 57 DLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
LP LG E G V E+G+GV F V + V
Sbjct: 55 GLPLTLGHEGVGTVAELGEGVTGFGVGDAV 84
>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1HSO|B Chain B, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1U3T|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
pdb|1U3T|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
Length = 374
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
EV +K++A GI + ++ SG + LP ILG E +GIVE VG+GV K
Sbjct: 35 EVRIKMVAVGICGTDDHVVSGTM--VTPLPVILGHEAAGIVESVGEGVTTVK 84
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 17 LTTVDKP---GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEV 73
L VD+P P D EV + + AAG+N + I G YP + A LG+E +G+V E
Sbjct: 224 LALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPGV----ASLGSEGAGVVVET 279
Query: 74 GQGV 77
G GV
Sbjct: 280 GPGV 283
>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|B Chain B, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|C Chain C, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|D Chain D, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL8|A Chain A, Human SdhNAD+ COMPLEX
pdb|1PL8|B Chain B, Human SdhNAD+ COMPLEX
pdb|1PL8|C Chain C, Human SdhNAD+ COMPLEX
pdb|1PL8|D Chain D, Human SdhNAD+ COMPLEX
Length = 356
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 15 LELTTVDKPGPCLDDEVLVKVMAAGINPVET----YIRSGQYPNLPDLPAILGTEVSGIV 70
LE + +PGP +EVL+++ + GI + Y R G + + P +LG E SG V
Sbjct: 21 LENYPIPEPGP---NEVLLRMHSVGICGSDVHYWEYGRIGNF--IVKKPMVLGHEASGTV 75
Query: 71 EEVGQGVKHFK 81
E+VG VKH K
Sbjct: 76 EKVGSSVKHLK 86
>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
pdb|1E3L|B Chain B, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
Length = 376
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 4 VQCK-----RWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
++CK + G P +E V P C EV ++V+A + T I +
Sbjct: 7 IKCKAAIAWKTGSPLCIEEIEVSPPKAC---EVRIQVIATCV--CHTDINATDPKKKALF 61
Query: 59 PAILGTEVSGIVEEVGQGVKHFK 81
P +LG E +GIVE VG GV +FK
Sbjct: 62 PVVLGHECAGIVESVGPGVTNFK 84
>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of
Human Glutathione-Dependent Formaldehyde Dehydrogenase
With Nad(H)
pdb|2FZW|B Chain B, Structure Of The Binary Complex Of The E67l Mutant Of
Human Glutathione-Dependent Formaldehyde Dehydrogenase
With Nad(H)
Length = 373
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 4 VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
++CK W G+P +E V P EV +K++A + + Y SG P
Sbjct: 5 IKCKAAVAWEAGKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPE-GCF 60
Query: 59 PAILGTEVSGIVEEVGQGVKHFKVKNIV 86
P ILG +GIVE VG+GV K + V
Sbjct: 61 PVILGHLGAGIVESVGEGVTKLKAGDTV 88
>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|B Chain B, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|C Chain C, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|D Chain D, Human SdhNADHINHIBITOR COMPLEX
Length = 356
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 15 LELTTVDKPGPCLDDEVLVKVMAAGINPVET----YIRSGQYPNLPDLPAILGTEVSGIV 70
LE + +PGP +EVL++ + GI + Y R G + + P +LG E SG V
Sbjct: 21 LENYPIPEPGP---NEVLLRXHSVGICGSDVHYWEYGRIGNF--IVKKPXVLGHEASGTV 75
Query: 71 EEVGQGVKHFK 81
E+VG VKH K
Sbjct: 76 EKVGSSVKHLK 86
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of
Human Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of
Human Fas Ii
Length = 344
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 10 GEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSG 68
G+P +V+EL ++ +V VK++AA INP + + G Y LP+LPA+ G E
Sbjct: 23 GDPAKVVELKNLELAA-VRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVA 81
Query: 69 IVEEVGQGVKHFK 81
V VG V K
Sbjct: 82 QVVAVGSNVTGLK 94
>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At
1.54 A Resolution
Length = 373
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W + + + V+ P EV +K++AAGI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEQKKPFSIEEVEVAPP-KAHEVRIKMVAAGICRSDDHVVSGTL--VAPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At
1.54 A Resolution
Length = 373
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W + + + V+ P EV +K++AAGI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEQKKPFSIEEVEVAPP-KAHEVRIKMVAAGICRSDDHVVSGTL--VAPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 10 GEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSG 68
G+P +V+EL ++ +V VK++AA INP + + G Y LP+LPA+ G E
Sbjct: 36 GDPAKVVELKNLELAA-VRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVA 94
Query: 69 IVEEVGQGVKHFK 81
V VG V K
Sbjct: 95 QVVAVGSNVTGLK 107
>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s
With Bound Nadp
Length = 371
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 23 PGPCLD-DEVLVKVMAAGINPVETYIRSGQYPNLPDLP-AILGTEVSGIVEEVGQGVKHF 80
P P L D+V V+V A INP +T +R GQ+ P A LGT+ +G V VG V H
Sbjct: 30 PCPMLPRDQVYVRVEAVAINPSDTSMR-GQFAT----PWAFLGTDYAGTVVAVGSDVTHI 84
Query: 81 KVKNIVRSSKS 91
+V + V +++
Sbjct: 85 QVGDRVYGAQN 95
>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|3UKO|B Chain B, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|4GL4|A Chain A, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
pdb|4GL4|B Chain B, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
Length = 378
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIV 70
+P V+E V P EV +K++ + + Y SG+ P P ILG E +GIV
Sbjct: 19 KPLVIEDVQVAPPQA---GEVRIKILYTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIV 74
Query: 71 EEVGQGVKHFKVKNIV 86
E VG+GV + + V
Sbjct: 75 ESVGEGVTEVQAGDHV 90
>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From
Tomato (solanum Lycopersicum) In Complex With Nad+
pdb|4DL9|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase From
Tomato (solanum Lycopersicum) In Complex With Nad+
pdb|4DLA|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase
Apoenzyme From Tomato (solanum Lycopersicum)
pdb|4DLA|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase
Apoenzyme From Tomato (solanum Lycopersicum)
pdb|4DLB|A Chain A, Structure Of S-nitrosoglutathione Reductase From Tomato
(solanum Lycopersicum) Crystallized In Presence Of Nadh
And Glutathione
pdb|4DLB|B Chain B, Structure Of S-nitrosoglutathione Reductase From Tomato
(solanum Lycopersicum) Crystallized In Presence Of Nadh
And Glutathione
Length = 396
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIV 70
+P V+E V P EV VKV+ + + Y SG+ P P +LG E +GIV
Sbjct: 37 KPLVIEDVQVAPPQA---GEVRVKVLYTALCHTDAYTWSGKDPE-GLFPCVLGHEAAGIV 92
Query: 71 EEVGQGV 77
E VG+GV
Sbjct: 93 ESVGEGV 99
>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed
With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa
pdb|3B70|A Chain A, Crystal Structure Of Aspergillus Terreus Trans-Acting
Lovastatin Polyketide Enoyl Reductase (Lovc) With Bound
Nadp
Length = 371
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 23 PGPCLD-DEVLVKVMAAGINPVETYIRSGQYPNLPDLP-AILGTEVSGIVEEVGQGVKHF 80
P P L D+V V+V A INP +T +R GQ+ P A LGT+ +G V VG V H
Sbjct: 30 PCPMLPRDQVYVRVEAVAINPSDTKMR-GQFAT----PWAFLGTDYAGTVVAVGSDVTHI 84
Query: 81 KVKNIVRSSKS 91
+V + V +++
Sbjct: 85 QVGDRVYGAQN 95
>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A71|B Chain B, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A72|A Chain A, An Active-Site Double Mutant (Phe93->trp, Val203->ala)
Of Horse Liver Alcohol Dehydrogenase In Complex With
The Isosteric Nad Analog Cpad
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDHVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp
Of Horse Liver Alcohol Dehydrogenase In Complex With
Nad And Inhibitor Trifluoroethanol
pdb|1AXE|B Chain B, Crystal Structure Of The Active-Site Mutant Phe93->trp
Of Horse Liver Alcohol Dehydrogenase In Complex With
Nad And Inhibitor Trifluoroethanol
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDHVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad
Double Mutant Of Gly 293 Ala And Pro 295 Thr
pdb|1QLJ|A Chain A, Horse Liver Alcohol Dehydrogenase Apo Enzyme Double
Mutant Of Gly 293 Ala And Pro 295 Thr
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDHVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver
Alcohol Dehydrogenase At 2.9 Angstroms Resolution
pdb|6ADH|B Chain B, Structure Of Triclinic Ternary Complex Of Horse Liver
Alcohol Dehydrogenase At 2.9 Angstroms Resolution
pdb|2OHX|A Chain A, Refined Crystal Structure Of Liver Alcohol
Dehydrogenase- Nadh Complex At 1.8 Angstroms Resolution
pdb|2OHX|B Chain B, Refined Crystal Structure Of Liver Alcohol
Dehydrogenase- Nadh Complex At 1.8 Angstroms Resolution
pdb|2OXI|A Chain A, Refined Crystal Structure Of Cu-Substituted Alcohol
Dehydrogenase At 2.1 Angstroms Resolution
pdb|2OXI|B Chain B, Refined Crystal Structure Of Cu-Substituted Alcohol
Dehydrogenase At 2.1 Angstroms Resolution
pdb|1HLD|A Chain A, Structures Of Horse Liver Alcohol Dehydrogenase
Complexed With Nad+ And Substituted Benzyl Alcohols
pdb|1HLD|B Chain B, Structures Of Horse Liver Alcohol Dehydrogenase
Complexed With Nad+ And Substituted Benzyl Alcohols
pdb|1ADB|A Chain A, Crystallographic Studies Of Isosteric Nad Analogues
Bound To Alcohol Dehydrogenase: Specificity And
Substrate Binding In Two Ternary Complexes
pdb|1ADB|B Chain B, Crystallographic Studies Of Isosteric Nad Analogues
Bound To Alcohol Dehydrogenase: Specificity And
Substrate Binding In Two Ternary Complexes
pdb|1ADC|A Chain A, Crystallographic Studies Of Isosteric Nad Analogues
Bound To Alcohol Dehydrogenase: Specificity And
Substrate Binding In Two Ternary Complexes
pdb|1ADC|B Chain B, Crystallographic Studies Of Isosteric Nad Analogues
Bound To Alcohol Dehydrogenase: Specificity And
Substrate Binding In Two Ternary Complexes
pdb|3BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|1LDY|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDE|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1HET|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HET|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HEU|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HEU|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HF3|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HF3|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1MG0|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+
And 2, 3-Difluorobenzyl Alcohol
pdb|1MG0|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+
And 2, 3-Difluorobenzyl Alcohol
pdb|1MG0|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed With Nad+
And 2, 3-Difluorobenzyl Alcohol
pdb|1MG0|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed With Nad+
And 2, 3-Difluorobenzyl Alcohol
pdb|1N92|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+
And 4- Iodopyrazole
pdb|1N92|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+
And 4- Iodopyrazole
pdb|1P1R|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nadh
And R- N-1-Methylhexylformamide
pdb|1P1R|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nadh
And R- N-1-Methylhexylformamide
pdb|1P1R|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed With Nadh
And R- N-1-Methylhexylformamide
pdb|1P1R|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed With Nadh
And R- N-1-Methylhexylformamide
pdb|1YE3|A Chain A, Horse Liver Alcohol Dehydrogenase Apoenzyme
pdb|2JHF|A Chain A, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHF|B Chain B, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHG|A Chain A, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHG|B Chain B, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|1ADF|A Chain A, Crystallographic Studies Of Two Alcohol
Dehydrogenase-Bound Analogs Of Thiazole-4-Carboxamide
Adenine Dinucleotide (Tad), The Active Anabolite Of The
Antitumor Agent Tiazofurin
pdb|1ADG|A Chain A, Crystallographic Studies Of Two Alcohol
Dehydrogenase-Bound Analogs Of Thiazole-4-Carboxamide
Adenine Dinucleotide (Tad), The Active Anabolite Of The
Antitumor Agent Tiazofurin
pdb|5ADH|A Chain A, Interdomain Motion In Liver Alcohol Dehydrogenase.
Structural And Energetic Analysis Of The Hinge Bending
Mode
pdb|7ADH|A Chain A, Three-Dimensional Structure Of Isonicotinimidylated
Liver Alcohol Dehydrogenase
pdb|8ADH|A Chain A, Interdomain Motion In Liver Alcohol Dehydrogenase.
Structural And Energetic Analysis Of The Hinge Bending
Mode
pdb|4DWV|A Chain A, Horse Alcohol Dehydrogenase Complexed With Nad+ And
2,3,4,5,6- Pentafluorobenzyl Alcohol
pdb|4DWV|B Chain B, Horse Alcohol Dehydrogenase Complexed With Nad+ And
2,3,4,5,6- Pentafluorobenzyl Alcohol
pdb|4DXH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+
And 2,2,2- Trifluoroethanol
pdb|4DXH|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+
And 2,2,2- Trifluoroethanol
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDHVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed
With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol
pdb|3OQ6|B Chain B, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed
With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDHVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
pdb|4ILK|B Chain B, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
Length = 359
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIV 70
+P L + + P P EV VKV AGI +++I G P P ++G E G++
Sbjct: 28 KPNQLSIIEREIPTPSAG-EVRVKVKLAGICGSDSHIYRGHNP-FAKYPRVIGHEFFGVI 85
Query: 71 EEVGQGVKHFKV 82
+ VG+GV+ +V
Sbjct: 86 DAVGEGVESARV 97
>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|B Chain B, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|C Chain C, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|D Chain D, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDHVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant
pdb|1MGO|B Chain B, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDHVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
pdb|1JU9|B Chain B, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDHVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant
Complexed To Nad+ And Pyrazole
pdb|1N8K|B Chain B, Horse Liver Alcohol Dehydrogenase Val292thr Mutant
Complexed To Nad+ And Pyrazole
Length = 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + ++ SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDHVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|B Chain B, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|C Chain C, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|D Chain D, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1D1S|A Chain A, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
pdb|1D1S|B Chain B, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
pdb|1D1S|C Chain C, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
pdb|1D1S|D Chain D, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
Length = 373
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
EV +K++A GI + ++ G + P I+G E +GIVE +G+GV K
Sbjct: 35 EVRIKILATGICRTDDHVIKGTM--VSKFPVIVGHEATGIVESIGEGVTTVK 84
>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|B Chain B, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|C Chain C, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|D Chain D, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
Length = 373
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
EV +K++A GI + ++ G + P I+G E +GIVE +G+GV K
Sbjct: 35 EVRIKILATGICRTDDHVIKGTM--VSKFPVIVGHEATGIVESIGEGVTTVK 84
>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol
Dehydrogenase Protein From Rhizobium Etli Cfn 42
pdb|4DVJ|B Chain B, Crystal Structure Of A Putative Zinc-Dependent Alcohol
Dehydrogenase Protein From Rhizobium Etli Cfn 42
Length = 363
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 22 KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
KP P D +LV+V A +NPV+ +R P+ D ++G + +GIV VG V F+
Sbjct: 47 KPAPAGHD-ILVEVKAVSVNPVDYKVRRSTPPDGTDW-KVIGYDAAGIVSAVGPDVTLFR 104
>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
pdb|1H2B|B Chain B, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
Length = 359
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 3 AVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL--PDLPA 60
A + + +P L + VD P +V+V++ AG+ + ++ G + L P LP
Sbjct: 18 AARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPY 75
Query: 61 ILGTEVSGIVEEVGQGVK 78
LG E G +EEV +GV+
Sbjct: 76 TLGHENVGYIEEVAEGVE 93
>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate
Alcohol Dehydrogenase (Adh8)
pdb|1P0C|B Chain B, Crystal Structure Of The Nadp(H)-Dependent Vertebrate
Alcohol Dehydrogenase (Adh8)
pdb|1P0F|A Chain A, Crystal Structure Of The Binary Complex:
Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase
(Adh8) With The Cofactor Nadp
pdb|1P0F|B Chain B, Crystal Structure Of The Binary Complex:
Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase
(Adh8) With The Cofactor Nadp
Length = 373
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIV 70
+P LE TV P EV +K++A+GI ++ + P+ P ILG E G+V
Sbjct: 20 KPLSLETITVAPPKA---HEVRIKILASGICGSDSSVLKEIIPS--KFPVILGHEAVGVV 74
Query: 71 EEVGQGVKHFK 81
E +G GV K
Sbjct: 75 ESIGAGVTCVK 85
>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG
MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl
Alcohol
pdb|1QV6|B Chain B, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG
MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl
Alcohol
pdb|1QV7|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG
MUTANT Complexed With Nad+ And 2,3-Difluorobenzyl
Alcohol
pdb|1QV7|B Chain B, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG
MUTANT Complexed With Nad+ And 2,3-Difluorobenzyl
Alcohol
Length = 374
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 4 VQCKR---WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++CK W E + + V+ P EV +K++A GI + + SG + LP
Sbjct: 7 IKCKAAVLWEEKKPFSIEEVEVAPP-KAHEVRIKMVATGICRSDDQVVSGTL--VTPLPV 63
Query: 61 ILGTEVSGIVEEVGQGV 77
I G E +GIVE +G+GV
Sbjct: 64 IAGHEAAGIVESIGEGV 80
>pdb|4A0S|A Chain A, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|B Chain B, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|C Chain C, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|D Chain D, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A10|A Chain A, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|B Chain B, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|C Chain C, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|D Chain D, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp
Length = 447
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 29 DEVLVKVMAAGIN----------PVETY------IRSGQYPNLPDLP-AILGTEVSGIVE 71
DEVLV VMA+ IN P+ T+ R G + D P +LG++ SG+V
Sbjct: 63 DEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVV 122
Query: 72 EVGQGVKHFK 81
G GV+ +K
Sbjct: 123 RTGIGVRRWK 132
>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|B Chain B, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|C Chain C, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|D Chain D, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
Length = 350
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 16 ELTTVD--KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL--PAILGTEVSGIVE 71
EL VD KPGP EVL+KV+A I + +I + P I+G EV+G V
Sbjct: 18 ELVEVDVPKPGP---GEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVV 74
Query: 72 EVGQGVKHFKVKNIV 86
EVG GV+ +V + +
Sbjct: 75 EVGPGVEDLQVGDYI 89
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDD-EVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
M A KR G P L VD P P ++ EV+++V A G+N + +R G Y P
Sbjct: 1 MKAWVLKRLGGP----LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPP 56
Query: 60 AILGTEVSGIVE 71
I G EV G+VE
Sbjct: 57 FIPGMEVVGVVE 68
>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|M Chain M, Architecture Of Mammalian Fatty Acid Synthase
Length = 295
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDD-EVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
M A KR G P L VD P P ++ EV+++V A G+N + +R G Y P
Sbjct: 1 MKAWVLKRLGGP----LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPP 56
Query: 60 AILGTEVSGIVE 71
I G EV G+VE
Sbjct: 57 FIPGMEVVGVVE 68
>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol
Dehydrogenase (Adh4) In Complex With Nad And Zn
pdb|3COS|B Chain B, Crystal Structure Of Human Class Ii Alcohol
Dehydrogenase (Adh4) In Complex With Nad And Zn
pdb|3COS|C Chain C, Crystal Structure Of Human Class Ii Alcohol
Dehydrogenase (Adh4) In Complex With Nad And Zn
pdb|3COS|D Chain D, Crystal Structure Of Human Class Ii Alcohol
Dehydrogenase (Adh4) In Complex With Nad And Zn
Length = 381
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 4 VQCKR---W--GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
++CK W G+P +E V P EV ++++A + + + ++ L
Sbjct: 9 IKCKAAIAWEAGKPLCIEEVEVAPPKA---HEVRIQIIATSLCHTDATVIDSKFEGLA-F 64
Query: 59 PAILGTEVSGIVEEVGQGVKHFK 81
P I+G E +GIVE +G GV + K
Sbjct: 65 PVIVGHEAAGIVESIGPGVTNVK 87
>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From
Sulfolobus Solfataricus
Length = 344
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 3 AVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSG-QYPNLPDLPAI 61
A K++ EP L + V+ P P +EVL+++ AG+ + + G + LP I
Sbjct: 6 AALLKKFSEP--LSIEDVNIPEPQ-GEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPII 62
Query: 62 LGTEVSGIVEEVGQGVKHFKVKNIV 86
LG E +G + EVG+ K K N+V
Sbjct: 63 LGHENAGTIVEVGELAKVKKGDNVV 87
>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From
Pyrococcus Horikoshii
pdb|2DFV|B Chain B, Hyperthermophilic Threonine Dehydrogenase From
Pyrococcus Horikoshii
pdb|2DFV|C Chain C, Hyperthermophilic Threonine Dehydrogenase From
Pyrococcus Horikoshii
Length = 347
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 16 ELTTVD--KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL--PAILGTEVSGIVE 71
EL VD KPGP EVL+KV+A I + +I + P I G EV+G V
Sbjct: 17 ELVEVDVPKPGP---GEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVV 73
Query: 72 EVGQGVKHFKVKNIV 86
E+G GV+ +V + V
Sbjct: 74 EIGPGVEGIEVGDYV 88
>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii
Ot3
Length = 348
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 16 ELTTVD--KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL--PAILGTEVSGIVE 71
EL VD KPGP EVL+KV+A I + +I + P I G EV+G V
Sbjct: 18 ELVEVDVPKPGP---GEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVV 74
Query: 72 EVGQGVKHFKVKNIV 86
E+G GV+ +V + V
Sbjct: 75 EIGPGVEGIEVGDYV 89
>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase
Length = 355
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 15 LELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL----PAILGTEVSGIV 70
LE + +PGP +EVL+K+ + GI + + Q+ + D P +LG E SG V
Sbjct: 20 LENYPIPEPGP---NEVLLKMHSVGI--CGSDVHYWQHGRIGDFVVKKPMVLGHEASGTV 74
Query: 71 EEVGQGVKHFK 81
+VG V+H +
Sbjct: 75 VKVGSLVRHLQ 85
>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From
Silverleaf Whitefly
Length = 352
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 28 DDEVLVKVMAAGINPVET-YIRSGQYPN-LPDLPAILGTEVSGIVEEVGQGVKHFK 81
+DEVL+++ GI + Y G+ + + P ++G E SG V +VG+ VKH K
Sbjct: 28 EDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLK 83
>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2DQ4|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2EJV|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
pdb|2EJV|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
Length = 343
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 17 LTTVDKP----GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDL--PAILGTEVSGIV 70
LT VD+P GP E+LV+V AA I + +I + P + G E SG+V
Sbjct: 13 LTLVDRPVPEPGP---GEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVV 69
Query: 71 EEVGQGVKHFKVKNIV 86
E VG GV+ +V + V
Sbjct: 70 EAVGPGVRRPQVGDHV 85
>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1Q1N|A Chain A, Apo And Holo Structures Of An Nadp(h)-dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|A Chain A, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|B Chain B, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
Length = 360
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 2 LAVQCKR-WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
+A+Q W P+ T P P D ++ +K+ A G+ + + +G + N+ +P
Sbjct: 10 IAIQSHEDWKNPK----KTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNM-KMPL 64
Query: 61 ILGTEVSGIVEEVG 74
++G E+ G V ++G
Sbjct: 65 VVGHEIVGKVVKLG 78
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 31 VLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEV 73
+LV++++AG+ + ++ G+ P +P LP ILG E +G V EV
Sbjct: 45 ILVEILSAGVCGSDVHMFRGEDPRVP-LPIILGHEGAGRVVEV 86
>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|B Chain B, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|C Chain C, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|D Chain D, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
Length = 404
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 2 LAVQCKRWGEPRVLELTT--VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQ------YP 53
L + R+ E RV E+ ++KP E+++KV A GI + + YP
Sbjct: 32 LGSKVWRYPEVRVEEVPEPRIEKP-----TEIIIKVKACGICGSDVHXAQTDEEGYILYP 86
Query: 54 NLPDLPAILGTEVSGIVEEVG 74
L P LG E SG+V E G
Sbjct: 87 GLTGFPVTLGHEFSGVVVEAG 107
>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
pdb|4EYE|B Chain B, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
Length = 342
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A+Q + P L T V+ PG + V+V V AAG+ + + G+Y + P
Sbjct: 22 MKAIQAQSLSGPEGLVYTDVETPGAG-PNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPF 80
Query: 61 ILGTEVSGIVEEV--GQGVK 78
+ G E +G+V G G+K
Sbjct: 81 VPGIETAGVVRSAPEGSGIK 100
>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|B Chain B, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|C Chain C, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|D Chain D, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
Length = 467
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 17/69 (24%)
Query: 30 EVLVKVMAAGIN----------PVETYIRSGQYPNLP------DLP-AILGTEVSGIVEE 72
E LV VMA+ +N PV T+ +Y L DLP I+G++++G+V
Sbjct: 90 EALVAVMASSVNYNSVWTSIFEPVSTFAFLERYGKLSPLTKRHDLPYHIIGSDLAGVVLR 149
Query: 73 VGQGVKHFK 81
G GV ++
Sbjct: 150 TGPGVNAWQ 158
>pdb|3PI7|A Chain A, Crystal Structure Of A Putative Nadph:quinone Reductase
(Mll3093) From Mesorhizobium Loti At 1.71 A Resolution
Length = 349
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 20 VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY--PNLPDLPA---ILGTEVSG 68
V PGP +VL+KV A INP + GQY P + PA +GT V+G
Sbjct: 44 VPAPGP---SQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAG 94
>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
pdb|4EEX|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
Length = 348
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 29 DEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKN 84
+E L+ + G+ + ++ +G Y N +LG E GIV+E+G V +V +
Sbjct: 27 NEALLDMEYCGVCHTDLHVAAGDYGN--KAGTVLGHEGIGIVKEIGADVSSLQVGD 80
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 18/84 (21%)
Query: 21 DKPGPCLD-DEVLVKVMAAGIN----------PVETY---IRSGQYPNLP---DLP-AIL 62
D P P L E LV VMA+ +N P+ T+ R G+ +L DLP ++
Sbjct: 62 DVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVI 121
Query: 63 GTEVSGIVEEVGQGVKHFKVKNIV 86
G++++G+V G GV ++ + V
Sbjct: 122 GSDLAGVVLRTGPGVNAWQAGDEV 145
>pdb|2DPW|A Chain A, Hpothetical Transferase Structure From Thermus
Thermophilus
Length = 232
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 31 VLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIV 86
VL + AAG++PV Y+ G+ P L PA+ + G++E + Q ++H + + +V
Sbjct: 38 VLEALYAAGLSPV--YV--GENPGLVPAPALTLPDRGGLLENLEQALEHVEGRVLV 89
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
EVL +AA T ++SG+ + +P LG E G ++ G++ K
Sbjct: 183 EVLHASLAAKAKQWRTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVK 234
>pdb|2F55|A Chain A, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|B Chain B, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|C Chain C, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
Length = 435
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 287 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 334
>pdb|8OHM|A Chain A, Crystal Structure Of Rna Helicase From Genotype 1b
Hepatitis C Virus: Mechanism Of Unwinding Duplex Rna
Length = 435
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 287 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 334
>pdb|3KQL|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQL|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQN|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|C Chain C, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|D Chain D, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|E Chain E, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|F Chain F, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
Length = 437
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 288 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 335
>pdb|3KQH|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQH|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQK|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQK|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
Length = 436
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 288 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 335
>pdb|2ZJO|A Chain A, Crystal Structure Of Hepatitis C Virus Ns3 Helicase With A
Novel Inhibitor
Length = 482
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 321 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 368
>pdb|4B75|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B75|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 511 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 558
>pdb|4A92|A Chain A, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor.
pdb|4A92|B Chain B, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor
Length = 666
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 511 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 558
>pdb|3O8B|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8B|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|4B71|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B71|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 511 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 558
>pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
pdb|1CU1|B Chain B, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
Length = 645
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 490 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 537
>pdb|4B6E|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6E|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 683
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
+T ++P D VL + AG + P ET +R Y N P LP
Sbjct: 511 VTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLP 558
>pdb|3GOH|A Chain A, Crystal Structure Of Alcohol Dehydrogenase Superfamily
Protein (np_718042.1) From Shewanella Oneidensis At
1.55 A Resolution
Length = 315
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 17 LTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQG 76
L +VD P DD +LV+ A GINPV+ N + + G + +G++ +VG
Sbjct: 19 LNSVDIPALAADD-ILVQNQAIGINPVDWKFIKANPINWSN-GHVPGVDGAGVIVKVGAK 76
Query: 77 V 77
V
Sbjct: 77 V 77
>pdb|1A1V|A Chain A, Hepatitis C Virus Ns3 Helicase Domain Complexed With
Single Stranded Sdna
Length = 476
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 21 DKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
++P D VL + AG + P ET +R Y N P LP
Sbjct: 315 ERPSGMFDSSVLCECYDAGXAWYELTPAETTVRLRAYMNTPGLP 358
>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|C Chain C, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|F Chain F, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 3 AVQCKRWGEPRVLELTTV-----DKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
AV + GEP+ + T D P +EV+VK + + INP + G YP+ P
Sbjct: 28 AVLYTQHGEPKDVLFTQSFEIDDDNLAP---NEVIVKTLGSPINPSDINQIQGVYPSKPA 84
Query: 58 LPAILGT 64
GT
Sbjct: 85 KTTGFGT 91
>pdb|3IUP|A Chain A, Crystal Structure Of Putative Nadph:quinone
Oxidoreductase (Yp_296108.1) From Ralstonia Eutropha
Jmp134 At 1.70 A Resolution
pdb|3IUP|B Chain B, Crystal Structure Of Putative Nadph:quinone
Oxidoreductase (Yp_296108.1) From Ralstonia Eutropha
Jmp134 At 1.70 A Resolution
Length = 379
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 15 LELTTVDKPGPCLDDEVLVKVMAAGINP 42
L L ++D P P DEVL+++ A+ +NP
Sbjct: 20 LSLDSIDTPHPG-PDEVLIRIEASPLNP 46
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 3 AVQCKRWGEPRVLELTTV-----DKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
AV + GEP+ + T D P +EV+VK + + INP + G YP+ P
Sbjct: 6 AVLYTQHGEPKDVLFTQSFEIDDDNLAP---NEVIVKTLGSPINPSDINQIQGVYPSKPA 62
Query: 58 LPAILGT 64
GT
Sbjct: 63 KTTGFGT 69
>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
Length = 348
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 29 DEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKN 84
+E L+ + G+ + ++ +G + N +LG E GIV+E+G V +V +
Sbjct: 27 NEALLDMEYCGVCHTDLHVAAGDFGN--KAGTVLGHEGIGIVKEIGADVSSLQVGD 80
>pdb|1HEI|A Chain A, Structure Of The Hepatitis C Virus Rna Helicase Domain
pdb|1HEI|B Chain B, Structure Of The Hepatitis C Virus Rna Helicase Domain
Length = 451
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 21 DKPGPCLDDEVLVKVMAAG-----INPVETYIRSGQYPNLPDLP 59
++P D VL + AG + P ET +R Y N P LP
Sbjct: 301 ERPSGMFDSSVLCECYDAGCAWYELMPAETTVRLRAYMNTPGLP 344
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 44 ETYIRSGQYPNLPDLPAILGTEVSGIVEEVG 74
+T I+ G+ ++ LP+ G EVS +V+ G
Sbjct: 552 QTMIKEGKVADMEHLPSYFGQEVSKLVKAHG 582
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 44 ETYIRSGQYPNLPDLPAILGTEVSGIVEEVG 74
+T I+ G+ ++ LP+ G EVS +V+ G
Sbjct: 552 QTMIKEGKVADMEHLPSYFGQEVSKLVKAHG 582
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 16 ELTTVDKPGP-CLDDEVLVKVMAAGINPVETYI-RSGQYPNLPDLPAILGTEVSGIVEEV 73
+L ++P P + +++V+ +A +N + + +G +L P + ++ SG+VE V
Sbjct: 40 DLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGXGLDLA-FPFVPASDXSGVVEAV 98
Query: 74 GQGVKHFKVKNIVRSS 89
G+ V F+ + V S+
Sbjct: 99 GKSVTRFRPGDRVIST 114
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 44 ETYIRSGQYPNLPDLPAILGTEVSGIVEEVG 74
+T I+ G+ ++ LP+ G EVS +V+ G
Sbjct: 552 QTMIKEGKVADMEHLPSYFGQEVSKLVKAHG 582
>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|D Chain D, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|E Chain E, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 3 AVQCKRWGEPRVLELTTV-----DKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
AV + GEP+ + T D P +EV+VK + + +NP + G YP+ P
Sbjct: 28 AVLYTQHGEPKDVLFTQSFEIDDDNLAP---NEVIVKTLGSPVNPSDINQIQGVYPSKPA 84
Query: 58 LPAILGT 64
GT
Sbjct: 85 KTTGFGT 91
>pdb|2GOP|A Chain A, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
pdb|2GOP|B Chain B, The Beta-Propeller Domain Of The Trilobed Protease From
Pyrococcus Furiosus Reveals An Open Velcro Topology
Length = 347
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 63 GTEVSGIVEEVGQGVKHFKVKN 84
G EV GI++EV +GV K+K+
Sbjct: 251 GKEVMGILDEVDRGVGQAKIKD 272
>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GU7|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
Length = 364
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 3 AVQCKRWGEPRVLELTTV-----DKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
AV + GEP+ + T D P +EV+VK + + +NP + G YP+ P
Sbjct: 6 AVLYTQHGEPKDVLFTQSFEIDDDNLAP---NEVIVKTLGSPVNPSDINQIQGVYPSKPA 62
Query: 58 LPAILGT 64
GT
Sbjct: 63 KTTGFGT 69
>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 6 CKRWGEPRVLELTTVDKPGPCLDD-EVLVKVMAAGINPVETYIRSGQY 52
KR G P L VD P P ++ EV+++V A G+N + R G Y
Sbjct: 6 LKRLGGP----LELVDLPEPEAEEGEVVLRVEAVGLNFADHLXRLGAY 49
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81
E+L +A ++ ++SG+ + +P LG E SG ++ G++ +
Sbjct: 173 EILQDALATKALEWQSVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVR 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,762,702
Number of Sequences: 62578
Number of extensions: 101018
Number of successful extensions: 395
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 119
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)