Query psy3511
Match_columns 91
No_of_seqs 177 out of 1341
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 18:32:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 99.9 2.9E-24 6.3E-29 141.1 11.1 84 1-88 4-87 (339)
2 COG0604 Qor NADPH:quinone redu 99.9 3.7E-22 8E-27 131.5 11.6 88 1-89 1-88 (326)
3 COG1062 AdhC Zn-dependent alco 99.9 3.7E-22 8.1E-27 130.4 9.6 85 1-90 3-87 (366)
4 KOG0023|consensus 99.9 1.1E-21 2.5E-26 127.3 9.9 84 2-87 11-94 (360)
5 KOG1197|consensus 99.8 1.8E-20 3.9E-25 119.0 9.5 86 2-89 10-95 (336)
6 TIGR02819 fdhA_non_GSH formald 99.8 6E-20 1.3E-24 123.5 11.2 83 1-89 3-92 (393)
7 cd08281 liver_ADH_like1 Zinc-d 99.8 6E-20 1.3E-24 122.2 10.3 86 1-89 1-92 (371)
8 PLN02740 Alcohol dehydrogenase 99.8 1.1E-19 2.4E-24 121.5 11.3 86 1-89 11-96 (381)
9 KOG0022|consensus 99.8 3.7E-20 8.1E-25 120.1 8.2 85 1-89 8-92 (375)
10 PF08240 ADH_N: Alcohol dehydr 99.8 7.9E-20 1.7E-24 103.7 8.4 63 28-90 1-63 (109)
11 TIGR03451 mycoS_dep_FDH mycoth 99.8 2.8E-19 6.1E-24 118.5 11.3 83 1-88 2-84 (358)
12 cd08230 glucose_DH Glucose deh 99.8 1.7E-19 3.8E-24 119.3 10.1 85 1-89 1-87 (355)
13 cd08291 ETR_like_1 2-enoyl thi 99.8 3.7E-19 8E-24 116.3 11.1 88 1-89 1-92 (324)
14 KOG0024|consensus 99.8 1.5E-19 3.2E-24 117.7 7.2 87 1-90 5-93 (354)
15 TIGR02818 adh_III_F_hyde S-(hy 99.8 1.1E-18 2.4E-23 116.2 11.4 85 1-89 2-86 (368)
16 cd08301 alcohol_DH_plants Plan 99.8 8.3E-19 1.8E-23 116.6 10.8 85 1-89 3-87 (369)
17 cd08239 THR_DH_like L-threonin 99.8 1.2E-18 2.5E-23 114.5 11.0 85 1-89 1-85 (339)
18 TIGR01202 bchC 2-desacetyl-2-h 99.8 1.6E-18 3.5E-23 113.1 11.1 83 1-88 2-87 (308)
19 cd08300 alcohol_DH_class_III c 99.8 3.3E-18 7.2E-23 113.8 11.2 85 1-89 3-87 (368)
20 PLN02586 probable cinnamyl alc 99.8 3.4E-18 7.4E-23 113.7 10.5 86 1-88 11-96 (360)
21 PLN02827 Alcohol dehydrogenase 99.8 5.9E-18 1.3E-22 113.2 10.8 82 1-89 13-94 (378)
22 cd08292 ETR_like_2 2-enoyl thi 99.8 9.7E-18 2.1E-22 109.0 11.3 88 1-89 1-89 (324)
23 cd08277 liver_alcohol_DH_like 99.8 1E-17 2.2E-22 111.4 11.2 84 1-89 3-86 (365)
24 KOG0025|consensus 99.8 4.5E-18 9.7E-23 109.6 8.9 88 2-90 21-109 (354)
25 TIGR02822 adh_fam_2 zinc-bindi 99.7 2.4E-17 5.2E-22 108.5 10.5 84 3-88 1-86 (329)
26 cd08238 sorbose_phosphate_red 99.7 3E-17 6.4E-22 110.8 10.6 85 1-89 3-94 (410)
27 PLN02178 cinnamyl-alcohol dehy 99.7 4.3E-17 9.4E-22 109.1 11.2 85 2-88 6-90 (375)
28 PLN02514 cinnamyl-alcohol dehy 99.7 3.4E-17 7.4E-22 108.7 10.7 84 1-88 10-93 (357)
29 cd08237 ribitol-5-phosphate_DH 99.7 3.3E-17 7.1E-22 108.2 9.8 81 2-89 4-87 (341)
30 cd08233 butanediol_DH_like (2R 99.7 7.8E-17 1.7E-21 106.4 10.7 84 1-88 1-94 (351)
31 cd08250 Mgc45594_like Mgc45594 99.7 1.5E-16 3.3E-21 103.8 11.9 88 1-89 2-91 (329)
32 cd08290 ETR 2-enoyl thioester 99.7 1.1E-16 2.4E-21 104.9 11.3 88 1-89 1-94 (341)
33 PRK10083 putative oxidoreducta 99.7 1.1E-16 2.4E-21 104.9 11.1 83 1-88 1-83 (339)
34 TIGR02817 adh_fam_1 zinc-bindi 99.7 1.3E-16 2.9E-21 104.3 10.5 86 2-89 1-89 (336)
35 cd05280 MDR_yhdh_yhfp Yhdh and 99.7 2.8E-16 6E-21 102.1 11.2 86 1-89 1-86 (325)
36 PRK10309 galactitol-1-phosphat 99.7 2.5E-16 5.5E-21 103.9 11.1 83 1-89 1-84 (347)
37 cd08296 CAD_like Cinnamyl alco 99.7 3.6E-16 7.8E-21 102.6 11.5 84 1-88 1-84 (333)
38 cd08278 benzyl_alcohol_DH Benz 99.7 2.3E-16 5E-21 104.9 10.5 83 1-88 3-85 (365)
39 cd08231 MDR_TM0436_like Hypoth 99.7 2.7E-16 5.8E-21 104.1 10.4 84 2-89 2-91 (361)
40 cd08276 MDR7 Medium chain dehy 99.7 7E-16 1.5E-20 100.4 12.1 88 1-89 1-88 (336)
41 cd05284 arabinose_DH_like D-ar 99.7 3.9E-16 8.4E-21 102.3 11.0 86 1-89 1-88 (340)
42 PTZ00354 alcohol dehydrogenase 99.7 7.4E-16 1.6E-20 100.3 12.1 88 1-89 2-89 (334)
43 cd08285 NADP_ADH NADP(H)-depen 99.7 4.4E-16 9.5E-21 102.8 11.1 84 1-89 1-84 (351)
44 PRK09880 L-idonate 5-dehydroge 99.7 2.8E-16 6E-21 103.7 10.2 81 1-88 5-87 (343)
45 cd08283 FDH_like_1 Glutathione 99.7 3.9E-16 8.4E-21 104.6 11.0 84 1-89 1-85 (386)
46 PRK10754 quinone oxidoreductas 99.7 4.7E-16 1E-20 101.5 11.1 87 1-89 2-88 (327)
47 cd08240 6_hydroxyhexanoate_dh_ 99.7 4.7E-16 1E-20 102.6 11.1 86 1-89 1-97 (350)
48 COG1063 Tdh Threonine dehydrog 99.7 2.3E-16 5E-21 104.9 9.6 85 1-90 1-86 (350)
49 cd08274 MDR9 Medium chain dehy 99.7 4.5E-16 9.8E-21 102.3 10.8 88 1-89 1-108 (350)
50 cd08273 MDR8 Medium chain dehy 99.7 8E-16 1.7E-20 100.3 11.9 87 2-89 2-88 (331)
51 cd08297 CAD3 Cinnamyl alcohol 99.7 6.2E-16 1.3E-20 101.5 11.1 86 1-88 1-86 (341)
52 cd08253 zeta_crystallin Zeta-c 99.7 6.7E-16 1.5E-20 99.6 11.0 88 1-89 1-88 (325)
53 cd08266 Zn_ADH_like1 Alcohol d 99.7 9.2E-16 2E-20 99.8 11.5 88 1-89 1-88 (342)
54 cd05276 p53_inducible_oxidored 99.7 1.2E-15 2.5E-20 98.3 11.8 88 1-89 1-88 (323)
55 cd08279 Zn_ADH_class_III Class 99.7 6.6E-16 1.4E-20 102.5 10.9 84 1-89 1-84 (363)
56 cd08272 MDR6 Medium chain dehy 99.7 1.2E-15 2.7E-20 98.6 11.9 88 1-89 1-88 (326)
57 cd08282 PFDH_like Pseudomonas 99.7 9.5E-16 2.1E-20 102.3 11.4 82 1-88 1-83 (375)
58 cd05278 FDH_like Formaldehyde 99.7 8.8E-16 1.9E-20 100.8 11.1 83 1-88 1-84 (347)
59 cd08244 MDR_enoyl_red Possible 99.7 1.4E-15 3E-20 98.8 11.8 88 1-89 1-90 (324)
60 PRK05396 tdh L-threonine 3-deh 99.7 8.5E-16 1.8E-20 101.0 10.8 86 1-89 1-88 (341)
61 cd08299 alcohol_DH_class_I_II_ 99.7 8.3E-16 1.8E-20 102.7 10.6 84 1-89 8-91 (373)
62 cd08256 Zn_ADH2 Alcohol dehydr 99.7 9.3E-16 2E-20 101.2 10.7 84 1-88 1-94 (350)
63 cd08259 Zn_ADH5 Alcohol dehydr 99.7 1.5E-15 3.2E-20 98.9 11.4 85 1-89 1-85 (332)
64 cd08234 threonine_DH_like L-th 99.7 1.3E-15 2.9E-20 99.5 11.1 82 1-88 1-82 (334)
65 cd08288 MDR_yhdh Yhdh putative 99.7 1.8E-15 3.9E-20 98.5 11.6 86 1-89 1-86 (324)
66 TIGR03201 dearomat_had 6-hydro 99.7 8.9E-16 1.9E-20 101.5 9.8 81 4-88 2-82 (349)
67 cd08270 MDR4 Medium chain dehy 99.7 2.3E-15 4.9E-20 97.2 11.4 82 1-89 1-82 (305)
68 cd08249 enoyl_reductase_like e 99.7 5E-16 1.1E-20 102.3 8.5 85 1-89 1-85 (339)
69 cd08254 hydroxyacyl_CoA_DH 6-h 99.7 1.7E-15 3.7E-20 98.9 10.9 86 1-88 1-86 (338)
70 PRK09422 ethanol-active dehydr 99.7 1.9E-15 4.2E-20 99.0 11.1 83 1-88 1-83 (338)
71 cd08286 FDH_like_ADH2 formalde 99.7 1.7E-15 3.6E-20 99.7 10.7 84 1-89 1-85 (345)
72 cd08258 Zn_ADH4 Alcohol dehydr 99.7 2.7E-15 5.9E-20 97.7 11.5 86 1-89 1-86 (306)
73 cd08263 Zn_ADH10 Alcohol dehyd 99.7 1.7E-15 3.6E-20 100.7 10.7 83 1-88 1-86 (367)
74 cd08248 RTN4I1 Human Reticulon 99.7 1.5E-15 3.3E-20 99.8 10.3 88 1-89 1-104 (350)
75 cd08287 FDH_like_ADH3 formalde 99.7 1.4E-15 3.1E-20 99.9 10.2 82 1-88 1-83 (345)
76 cd08293 PTGR2 Prostaglandin re 99.7 1.4E-15 3E-20 100.0 9.7 77 12-89 20-99 (345)
77 cd08260 Zn_ADH6 Alcohol dehydr 99.7 3.3E-15 7.1E-20 98.3 11.3 84 1-88 1-84 (345)
78 PRK13771 putative alcohol dehy 99.7 3.5E-15 7.5E-20 97.7 11.3 85 1-89 1-85 (334)
79 cd08235 iditol_2_DH_like L-idi 99.6 3E-15 6.4E-20 98.3 10.8 84 1-89 1-84 (343)
80 cd08264 Zn_ADH_like2 Alcohol d 99.6 4.5E-15 9.8E-20 96.8 11.6 85 1-89 1-85 (325)
81 cd08262 Zn_ADH8 Alcohol dehydr 99.6 2.7E-15 5.8E-20 98.5 10.4 84 1-89 1-95 (341)
82 cd08298 CAD2 Cinnamyl alcohol 99.6 4.8E-15 1E-19 96.8 11.3 86 1-88 1-88 (329)
83 cd08252 AL_MDR Arginate lyase 99.6 4.6E-15 1E-19 97.0 11.2 87 1-89 1-90 (336)
84 TIGR02823 oxido_YhdH putative 99.6 5E-15 1.1E-19 96.4 11.1 85 2-89 1-85 (323)
85 cd08236 sugar_DH NAD(P)-depend 99.6 3.9E-15 8.5E-20 97.8 10.6 83 1-89 1-83 (343)
86 cd08289 MDR_yhfp_like Yhfp put 99.6 5.1E-15 1.1E-19 96.4 11.0 86 1-89 1-86 (326)
87 cd08261 Zn_ADH7 Alcohol dehydr 99.6 5.1E-15 1.1E-19 97.1 10.7 83 1-88 1-83 (337)
88 cd08268 MDR2 Medium chain dehy 99.6 6.7E-15 1.5E-19 95.1 11.0 88 1-89 1-88 (328)
89 cd08284 FDH_like_2 Glutathione 99.6 5.1E-15 1.1E-19 97.2 10.4 83 1-89 1-84 (344)
90 cd08271 MDR5 Medium chain dehy 99.6 1.5E-14 3.2E-19 93.8 11.7 87 1-89 1-87 (325)
91 cd08242 MDR_like Medium chain 99.6 7.9E-15 1.7E-19 95.6 10.4 77 1-88 1-77 (319)
92 cd05283 CAD1 Cinnamyl alcohol 99.6 7.3E-15 1.6E-19 96.6 10.1 82 2-87 1-82 (337)
93 cd08294 leukotriene_B4_DH_like 99.6 7.8E-15 1.7E-19 95.7 9.9 81 1-89 3-87 (329)
94 cd05289 MDR_like_2 alcohol deh 99.6 1.8E-14 3.8E-19 92.5 11.1 88 1-89 1-90 (309)
95 cd08295 double_bond_reductase_ 99.6 7.7E-15 1.7E-19 96.5 9.5 77 12-89 18-100 (338)
96 cd05279 Zn_ADH1 Liver alcohol 99.6 1.3E-14 2.8E-19 96.6 10.6 83 2-89 2-84 (365)
97 cd08247 AST1_like AST1 is a cy 99.6 1.2E-14 2.7E-19 95.9 10.4 89 1-89 1-90 (352)
98 cd05281 TDH Threonine dehydrog 99.6 2.8E-14 6E-19 93.9 10.8 86 1-89 1-88 (341)
99 TIGR02824 quinone_pig3 putativ 99.6 5.1E-14 1.1E-18 90.9 11.6 88 1-89 1-88 (325)
100 TIGR01751 crot-CoA-red crotony 99.6 3.1E-14 6.7E-19 95.7 10.6 88 1-89 8-108 (398)
101 cd08243 quinone_oxidoreductase 99.6 7.1E-14 1.5E-18 90.4 11.6 85 1-89 1-85 (320)
102 cd05282 ETR_like 2-enoyl thioe 99.6 4.3E-14 9.4E-19 91.8 10.6 84 6-90 3-88 (323)
103 cd08275 MDR3 Medium chain dehy 99.6 9E-14 2E-18 90.5 11.8 87 2-89 1-87 (337)
104 PLN02702 L-idonate 5-dehydroge 99.6 8.2E-14 1.8E-18 92.5 11.5 75 13-88 27-103 (364)
105 cd08246 crotonyl_coA_red croto 99.6 4.6E-14 1E-18 94.6 10.3 88 1-89 13-112 (393)
106 cd08245 CAD Cinnamyl alcohol d 99.6 8.2E-14 1.8E-18 91.1 10.6 82 2-87 1-82 (330)
107 cd08241 QOR1 Quinone oxidoredu 99.5 2.4E-13 5.2E-18 87.6 11.7 87 1-89 1-88 (323)
108 TIGR00692 tdh L-threonine 3-de 99.5 8.1E-14 1.8E-18 91.7 9.5 73 15-88 11-85 (340)
109 cd05286 QOR2 Quinone oxidoredu 99.5 2.8E-13 6.1E-18 87.1 11.3 85 2-89 1-85 (320)
110 PLN03154 putative allyl alcoho 99.5 3.9E-13 8.4E-18 89.2 11.7 87 2-89 10-105 (348)
111 cd08232 idonate-5-DH L-idonate 99.5 1.7E-13 3.7E-18 89.9 9.7 77 11-88 5-83 (339)
112 cd08265 Zn_ADH3 Alcohol dehydr 99.5 4.7E-13 1E-17 89.7 11.4 74 14-88 38-117 (384)
113 cd08269 Zn_ADH9 Alcohol dehydr 99.5 3.1E-13 6.7E-18 87.4 9.8 78 11-89 3-82 (312)
114 TIGR02825 B4_12hDH leukotriene 99.5 3.8E-13 8.2E-18 88.1 9.5 80 2-89 2-85 (325)
115 cd08267 MDR1 Medium chain dehy 99.5 6.6E-13 1.4E-17 85.9 9.1 83 6-89 3-89 (319)
116 cd05285 sorbitol_DH Sorbitol d 99.5 9.6E-13 2.1E-17 86.7 10.0 75 13-88 8-84 (343)
117 cd05288 PGDH Prostaglandin deh 99.4 2.7E-12 6E-17 83.7 10.7 85 2-89 3-93 (329)
118 cd08251 polyketide_synthase po 99.4 6.8E-12 1.5E-16 80.4 9.6 67 22-89 2-68 (303)
119 cd05188 MDR Medium chain reduc 99.3 2.4E-11 5.2E-16 76.8 7.8 61 30-90 1-61 (271)
120 COG2130 Putative NADP-dependen 99.2 2.8E-10 6.2E-15 74.2 8.2 76 12-90 24-101 (340)
121 cd05195 enoyl_red enoyl reduct 99.1 4.1E-10 9E-15 71.4 7.9 58 29-89 1-58 (293)
122 smart00829 PKS_ER Enoylreducta 98.9 1.6E-08 3.5E-13 64.1 7.2 53 33-89 2-54 (288)
123 KOG1198|consensus 98.8 9.6E-08 2.1E-12 63.9 9.2 86 3-89 7-100 (347)
124 TIGR03366 HpnZ_proposed putati 98.4 5.1E-07 1.1E-11 58.4 3.7 29 61-89 1-35 (280)
125 KOG1196|consensus 98.1 4.6E-05 9.9E-10 50.3 8.5 75 13-89 20-100 (343)
126 cd08255 2-desacetyl-2-hydroxye 98.1 8.3E-06 1.8E-10 52.2 4.8 33 57-89 19-51 (277)
127 PF13823 ADH_N_assoc: Alcohol 95.0 0.036 7.8E-07 22.8 2.3 21 1-24 1-21 (23)
128 KOG1202|consensus 94.7 0.09 2E-06 41.3 5.2 70 10-89 1424-1501(2376)
129 cd00320 cpn10 Chaperonin 10 Kd 93.9 0.098 2.1E-06 28.9 3.1 23 66-88 35-66 (93)
130 PTZ00414 10 kDa heat shock pro 93.2 0.16 3.4E-06 28.5 3.1 23 66-88 45-71 (100)
131 PRK00364 groES co-chaperonin G 92.6 0.16 3.4E-06 28.2 2.7 24 66-89 36-68 (95)
132 PRK14533 groES co-chaperonin G 91.2 0.38 8.2E-06 26.5 3.1 24 66-89 36-63 (91)
133 COG0234 GroS Co-chaperonin Gro 90.2 0.42 9.2E-06 26.6 2.7 23 66-88 36-67 (96)
134 PF00166 Cpn10: Chaperonin 10 89.8 0.4 8.7E-06 26.3 2.5 26 64-89 33-67 (93)
135 KOG1641|consensus 83.7 2.1 4.6E-05 24.1 3.1 26 63-88 41-75 (104)
136 cd06919 Asp_decarbox Aspartate 77.1 1.9 4.1E-05 24.7 1.6 31 60-90 58-88 (111)
137 TIGR00223 panD L-aspartate-alp 73.6 2.6 5.6E-05 24.6 1.6 31 60-90 59-89 (126)
138 PRK05449 aspartate alpha-decar 73.2 2.6 5.7E-05 24.6 1.5 31 60-90 59-89 (126)
139 PF02261 Asp_decarbox: Asparta 67.8 2.2 4.8E-05 24.6 0.5 30 61-90 60-89 (116)
140 PF11017 DUF2855: Protein of u 65.0 9.5 0.00021 25.8 3.0 28 60-90 32-59 (314)
141 COG0853 PanD Aspartate 1-decar 57.1 7.1 0.00015 22.8 1.2 30 61-90 59-88 (126)
142 PF14031 D-ser_dehydrat: Putat 55.1 14 0.00031 20.2 2.2 26 64-90 52-77 (94)
143 PF10844 DUF2577: Protein of u 45.7 19 0.00041 20.0 1.8 13 78-90 75-87 (100)
144 PF10077 DUF2314: Uncharacteri 43.5 49 0.0011 19.4 3.4 27 62-88 62-88 (133)
145 KOG3438|consensus 41.2 56 0.0012 18.5 3.1 32 14-46 42-74 (105)
146 smart00739 KOW KOW (Kyprides, 38.0 33 0.00071 13.6 1.7 10 80-89 2-11 (28)
147 TIGR00739 yajC preprotein tran 37.9 22 0.00047 19.2 1.2 11 79-89 37-47 (84)
148 PRK06763 F0F1 ATP synthase sub 37.6 45 0.00097 21.3 2.7 12 78-89 73-84 (213)
149 PRK02290 3-dehydroquinate synt 36.3 22 0.00047 24.5 1.2 15 76-90 312-326 (344)
150 PF01959 DHQS: 3-dehydroquinat 35.3 24 0.00052 24.4 1.3 14 77-90 323-336 (354)
151 KOG3209|consensus 35.2 21 0.00047 27.2 1.1 23 67-90 782-807 (984)
152 PF15057 DUF4537: Domain of un 33.7 53 0.0011 19.0 2.4 12 78-89 54-65 (124)
153 PF10447 EXOSC1: Exosome compo 31.7 32 0.00069 18.5 1.2 29 60-88 40-77 (82)
154 PF03459 TOBE: TOBE domain; I 31.4 39 0.00086 16.5 1.5 11 79-89 46-56 (64)
155 PF01455 HupF_HypC: HupF/HypC 31.1 44 0.00095 17.2 1.6 13 78-90 36-48 (68)
156 cd03698 eRF3_II_like eRF3_II_l 30.8 70 0.0015 16.7 2.5 8 80-87 57-64 (83)
157 cd03695 CysN_NodQ_II CysN_NodQ 30.1 61 0.0013 17.0 2.2 11 80-90 27-37 (81)
158 KOG4680|consensus 29.7 1.2E+02 0.0026 18.3 3.4 16 26-41 68-83 (153)
159 PF13403 Hint_2: Hint domain 28.9 37 0.00081 20.1 1.3 13 77-89 18-30 (147)
160 PRK05886 yajC preprotein trans 28.7 36 0.00079 19.4 1.2 12 78-89 37-48 (109)
161 cd04486 YhcR_OBF_like YhcR_OBF 28.6 98 0.0021 16.2 3.1 12 77-88 42-53 (78)
162 smart00350 MCM minichromosome 27.6 76 0.0016 22.8 2.8 20 70-89 108-127 (509)
163 TIGR00074 hypC_hupF hydrogenas 27.5 59 0.0013 17.2 1.8 11 79-89 35-45 (76)
164 cd00986 PDZ_LON_protease PDZ d 27.2 86 0.0019 15.9 2.4 11 79-89 24-34 (79)
165 PRK05585 yajC preprotein trans 27.1 40 0.00087 19.0 1.1 12 78-89 51-62 (106)
166 PF01079 Hint: Hint module; I 27.1 33 0.00072 21.9 0.9 13 78-90 30-42 (217)
167 PRK06531 yajC preprotein trans 26.8 41 0.00088 19.3 1.1 11 79-89 36-46 (113)
168 PF10377 ATG11: Autophagy-rela 26.6 49 0.0011 19.3 1.5 13 78-90 41-53 (129)
169 cd04089 eRF3_II eRF3_II: domai 25.7 94 0.002 16.1 2.4 8 80-87 56-63 (82)
170 PF14451 Ub-Mut7C: Mut7-C ubiq 25.5 1.1E+02 0.0024 16.3 2.7 26 65-90 47-75 (81)
171 PF02832 Flavi_glycop_C: Flavi 25.3 1.1E+02 0.0025 17.1 2.7 25 14-40 8-32 (97)
172 cd07029 RNAP_I_III_AC19 AC19 s 25.3 1.2E+02 0.0027 16.3 3.7 31 15-46 36-67 (85)
173 TIGR00638 Mop molybdenum-pteri 25.1 69 0.0015 15.7 1.8 11 79-89 48-58 (69)
174 COG1862 YajC Preprotein transl 25.0 49 0.0011 18.4 1.2 12 78-89 42-53 (97)
175 PF14444 S1-like: S1-like 24.6 56 0.0012 16.5 1.3 9 81-89 35-43 (58)
176 cd06927 RNAP_L L subunit of Ar 24.6 1.3E+02 0.0027 16.1 3.9 32 14-46 35-67 (83)
177 KOG3262|consensus 24.4 92 0.002 19.7 2.4 14 77-90 116-129 (215)
178 PF01878 EVE: EVE domain; Int 23.6 56 0.0012 19.0 1.4 12 79-90 39-50 (143)
179 cd04482 RPA2_OBF_like RPA2_OBF 22.2 63 0.0014 17.5 1.3 13 78-90 46-58 (91)
180 smart00110 C1Q Complement comp 22.2 89 0.0019 18.2 2.0 11 79-89 99-109 (135)
181 PF11948 DUF3465: Protein of u 22.2 79 0.0017 18.7 1.8 15 75-89 81-95 (131)
182 PF02699 YajC: Preprotein tran 22.0 27 0.00058 18.7 -0.2 12 78-89 35-46 (82)
183 PF02211 NHase_beta: Nitrile h 22.0 68 0.0015 20.7 1.6 14 76-89 131-144 (222)
184 cd06819 PLPDE_III_LS_D-TA Type 21.5 1.4E+02 0.0031 20.1 3.1 15 77-91 314-328 (358)
185 cd00136 PDZ PDZ domain, also c 20.6 1.1E+02 0.0024 14.8 2.0 12 79-90 30-41 (70)
186 cd03697 EFTU_II EFTU_II: Elong 20.4 1.4E+02 0.003 15.7 2.4 10 80-89 27-36 (87)
187 COG0309 HypE Hydrogenase matur 20.4 1.5E+02 0.0032 20.5 3.0 33 58-90 138-171 (339)
188 PRK08564 5'-methylthioadenosin 20.1 1.7E+02 0.0037 19.3 3.2 27 62-88 82-108 (267)
189 COG0298 HypC Hydrogenase matur 20.0 1.7E+02 0.0036 15.9 3.0 11 79-89 38-48 (82)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.92 E-value=2.9e-24 Score=141.07 Aligned_cols=84 Identities=39% Similarity=0.583 Sum_probs=79.6
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++.+++++ +++.+.+.|+ |+++||+|+|+|+|+|++|++..+|.++.. .+|.++|||.+|+|+++|++|++|
T Consensus 4 mkA~~~~~~~~p--l~i~e~~~p~-p~~~eVlI~v~~~GVChsDlH~~~G~~~~~-~~P~ipGHEivG~V~~vG~~V~~~ 79 (339)
T COG1064 4 MKAAVLKKFGQP--LEIEEVPVPE-PGPGEVLIKVEACGVCHTDLHVAKGDWPVP-KLPLIPGHEIVGTVVEVGEGVTGL 79 (339)
T ss_pred eEEEEEccCCCC--ceEEeccCCC-CCCCeEEEEEEEEeecchhhhhhcCCCCCC-CCCccCCcceEEEEEEecCCCccC
Confidence 899999998888 9999999999 999999999999999999999999999754 499999999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||||..
T Consensus 80 k~GDrVgV 87 (339)
T COG1064 80 KVGDRVGV 87 (339)
T ss_pred CCCCEEEe
Confidence 99999976
No 2
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.89 E-value=3.7e-22 Score=131.51 Aligned_cols=88 Identities=42% Similarity=0.663 Sum_probs=82.0
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++.+..+++++.+++++.+.|. +++|||+||++++|+|+.|++.+.|......++|+++|.|++|+|+++|++++.|
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~-p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~ 79 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPE-PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGF 79 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCC-CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCc
Confidence 899999999999889999999999 9999999999999999999999999744345689999999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||||+..
T Consensus 80 ~~GdrV~~~ 88 (326)
T COG0604 80 KVGDRVAAL 88 (326)
T ss_pred CCCCEEEEc
Confidence 999999986
No 3
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.88 E-value=3.7e-22 Score=130.42 Aligned_cols=85 Identities=36% Similarity=0.491 Sum_probs=78.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
+|++++.++++| |+++++++++ |+++||+||+.++|+||+|...++|..+. .+|.++|||.+|+|+++|++|+++
T Consensus 3 ~~aAV~~~~~~P--l~i~ei~l~~-P~~gEVlVri~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt~v 77 (366)
T COG1062 3 TRAAVAREAGKP--LEIEEVDLDP-PRAGEVLVRITATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVTSV 77 (366)
T ss_pred ceEeeeecCCCC--eEEEEEecCC-CCCCeEEEEEEEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCcccc
Confidence 578888888888 9999999999 99999999999999999999999998875 499999999999999999999999
Q ss_pred CCCCEEEeeC
Q psy3511 81 KVKNIVRSSK 90 (91)
Q Consensus 81 ~~Gd~V~~~~ 90 (91)
++||+|+..+
T Consensus 78 kpGDhVI~~f 87 (366)
T COG1062 78 KPGDHVILLF 87 (366)
T ss_pred CCCCEEEEcc
Confidence 9999998653
No 4
>KOG0023|consensus
Probab=99.87 E-value=1.1e-21 Score=127.31 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=78.9
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
++|.+.++++...+++.+++.|+ ++++||+|+++|+|+|++|+++..|.++. .++|.++|||.+|+|+++|++|++|+
T Consensus 11 ~g~~~~~~~G~l~p~~~~~~~~~-~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~VvkvGs~V~~~k 88 (360)
T KOG0023|consen 11 FGWAARDPSGVLSPEVFSFPVRE-PGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKVGSNVTGFK 88 (360)
T ss_pred EEEEEECCCCCCCcceeEcCCCC-CCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEECCCccccc
Confidence 57888888887778889999999 99999999999999999999999999987 78999999999999999999999999
Q ss_pred CCCEEE
Q psy3511 82 VKNIVR 87 (91)
Q Consensus 82 ~Gd~V~ 87 (91)
+||||-
T Consensus 89 iGD~vG 94 (360)
T KOG0023|consen 89 IGDRVG 94 (360)
T ss_pred ccCeee
Confidence 999984
No 5
>KOG1197|consensus
Probab=99.84 E-value=1.8e-20 Score=118.98 Aligned_cols=86 Identities=31% Similarity=0.442 Sum_probs=81.0
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
|.+++++.|+.+.+++++.|.|+ |.++|++||.+|+|+|+.|.+.++|.|. ..++|.++|.|++|+|+++|+++++++
T Consensus 10 k~i~v~e~Ggydvlk~ed~pv~~-papgel~iknka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAvG~gvtdrk 87 (336)
T KOG1197|consen 10 KCIVVTEFGGYDVLKLEDRPVPP-PAPGELTIKNKACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAVGEGVTDRK 87 (336)
T ss_pred eEEEEeccCCcceEEEeeecCCC-CCCCceEEeehhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEecCCccccc
Confidence 67888999999999999999999 9999999999999999999999999885 568999999999999999999999999
Q ss_pred CCCEEEee
Q psy3511 82 VKNIVRSS 89 (91)
Q Consensus 82 ~Gd~V~~~ 89 (91)
+||||+..
T Consensus 88 vGDrVayl 95 (336)
T KOG1197|consen 88 VGDRVAYL 95 (336)
T ss_pred cccEEEEe
Confidence 99999764
No 6
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.83 E-value=6e-20 Score=123.48 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=72.0
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCC-------CCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEe
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCL-------DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEV 73 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~-------~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~v 73 (91)
||++++..++ .+++++.+.|. ++ +||||||+.++|||++|++.+.|.++ ..+|.++|||++|+|+++
T Consensus 3 mka~v~~~~~---~~~~~e~~~P~-~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~--~~~p~i~GhE~~G~V~~v 76 (393)
T TIGR02819 3 NRGVVYLGPG---KVEVQDIDYPK-LELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT--APTGLVLGHEITGEVIEK 76 (393)
T ss_pred ceEEEEecCC---ceeEEeccCCc-ccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC--CCCCccccceeEEEEEEE
Confidence 8999987543 58889999988 64 68999999999999999999987643 256899999999999999
Q ss_pred CCCCCCCCCCCEEEee
Q psy3511 74 GQGVKHFKVKNIVRSS 89 (91)
Q Consensus 74 G~~~~~~~~Gd~V~~~ 89 (91)
|+++++|++||||...
T Consensus 77 G~~V~~~~vGdrV~~~ 92 (393)
T TIGR02819 77 GRDVEFIKIGDIVSVP 92 (393)
T ss_pred cCccccccCCCEEEEe
Confidence 9999999999999763
No 7
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.83 E-value=6e-20 Score=122.25 Aligned_cols=86 Identities=35% Similarity=0.460 Sum_probs=77.7
Q ss_pred CeEEEEcccCC------CCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeC
Q psy3511 1 MLAVQCKRWGE------PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVG 74 (91)
Q Consensus 1 m~a~~~~~~~~------~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG 74 (91)
|||+++.+++. ++.+++++.+.|. ++++||+||+.+++||++|++.+.|.++ ..+|.++|||++|+|+++|
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~-~~~~evlV~v~~~gi~~~D~~~~~g~~~--~~~p~i~GhE~~G~V~~vG 77 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDP-PGPGEVLVKIAAAGLCHSDLSVINGDRP--RPLPMALGHEAAGVVVEVG 77 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCC-CCCCeEEEEEEEEeeCccchHhhcCCCC--CCCCccCCccceeEEEEeC
Confidence 99999999875 4779999999999 9999999999999999999999988653 2468899999999999999
Q ss_pred CCCCCCCCCCEEEee
Q psy3511 75 QGVKHFKVKNIVRSS 89 (91)
Q Consensus 75 ~~~~~~~~Gd~V~~~ 89 (91)
+++++|++||||++.
T Consensus 78 ~~v~~~~~GdrV~~~ 92 (371)
T cd08281 78 EGVTDLEVGDHVVLV 92 (371)
T ss_pred CCCCcCCCCCEEEEc
Confidence 999999999999863
No 8
>PLN02740 Alcohol dehydrogenase-like
Probab=99.83 E-value=1.1e-19 Score=121.49 Aligned_cols=86 Identities=29% Similarity=0.356 Sum_probs=75.8
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++..++++ +.+++.+.|. ++++||+||+++++||++|++.+.|.+.....+|.++|||++|+|+++|++++.|
T Consensus 11 mka~~~~~~~~~--~~~~e~~~P~-~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~ 87 (381)
T PLN02740 11 CKAAVAWGPGEP--LVMEEIRVDP-PQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDL 87 (381)
T ss_pred eEEEEEecCCCC--cEEEEeeCCC-CCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCCcC
Confidence 899999876544 7888999998 9999999999999999999999988754334578899999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||||++.
T Consensus 88 ~vGdrV~~~ 96 (381)
T PLN02740 88 KAGDHVIPI 96 (381)
T ss_pred CCCCEEEec
Confidence 999999864
No 9
>KOG0022|consensus
Probab=99.83 E-value=3.7e-20 Score=120.15 Aligned_cols=85 Identities=33% Similarity=0.485 Sum_probs=77.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
+||++..+++.| |..+++..++ |+.+||+||+.++++|++|.+.++|..+ ...+|.++|||++|+|+++|++|+.+
T Consensus 8 CKAAV~w~a~~P--L~IEei~V~p-Pka~EVRIKI~~t~vCHTD~~~~~g~~~-~~~fP~IlGHEaaGIVESvGegV~~v 83 (375)
T KOG0022|consen 8 CKAAVAWEAGKP--LVIEEIEVAP-PKAHEVRIKILATGVCHTDAYVWSGKDP-EGLFPVILGHEAAGIVESVGEGVTTV 83 (375)
T ss_pred EeEeeeccCCCC--eeEEEEEeCC-CCCceEEEEEEEEeeccccceeecCCCc-cccCceEecccceeEEEEecCCcccc
Confidence 588888888888 8999999888 9999999999999999999999998763 45789999999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|+..
T Consensus 84 k~GD~Vipl 92 (375)
T KOG0022|consen 84 KPGDHVIPL 92 (375)
T ss_pred CCCCEEeec
Confidence 999999865
No 10
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.82 E-value=7.9e-20 Score=103.67 Aligned_cols=63 Identities=49% Similarity=0.638 Sum_probs=54.2
Q ss_pred CCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511 28 DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSK 90 (91)
Q Consensus 28 ~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~ 90 (91)
|+||+||++++|||++|++.+.+.......+|.++|||++|+|+++|+++++|++||+|++.+
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSP 63 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEES
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeec
Confidence 689999999999999999999986444558899999999999999999999999999998753
No 11
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.82 E-value=2.8e-19 Score=118.50 Aligned_cols=83 Identities=31% Similarity=0.489 Sum_probs=75.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.+++.+ +++++.+.|. ++++||+||+.++++|++|++.+.|.++ ..+|.++|||++|+|+++|+++++|
T Consensus 2 mka~~~~~~~~~--~~~~~~~~p~-~~~~evlV~v~~~gi~~~D~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~ 76 (358)
T TIGR03451 2 VRGVIARSKGAP--VELETIVVPD-PGPGEVIVDIQACGVCHTDLHYREGGIN--DEFPFLLGHEAAGVVEAVGEGVTDV 76 (358)
T ss_pred cEEEEEccCCCC--CEEEEEECCC-CCCCeEEEEEEEEeecHHHHHHhcCCcc--ccCCcccccceEEEEEEeCCCCccc
Confidence 999999988766 7889999999 9999999999999999999999888643 2468899999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|++
T Consensus 77 ~~GdrV~~ 84 (358)
T TIGR03451 77 APGDYVVL 84 (358)
T ss_pred CCCCEEEE
Confidence 99999986
No 12
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.82 E-value=1.7e-19 Score=119.32 Aligned_cols=85 Identities=29% Similarity=0.496 Sum_probs=73.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCC--CCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--DLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~--~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
||++++... +++ +++++.|.|+ ++++||+||+++++||++|++.+.|.++..+ .+|.++|||++|+|+++|++ +
T Consensus 1 mka~~~~~~-~~~-l~~~~~p~p~-~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~ 76 (355)
T cd08230 1 MKAIAVKPG-KPG-VRVVDIPEPE-PTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-S 76 (355)
T ss_pred CceeEecCC-CCC-CeEEeCCCCC-CCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-C
Confidence 899999853 334 8999999999 9999999999999999999999998754322 35789999999999999999 9
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.|++||||+..
T Consensus 77 ~~~vGdrV~~~ 87 (355)
T cd08230 77 GLSPGDLVVPT 87 (355)
T ss_pred CCCCCCEEEec
Confidence 99999999864
No 13
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.81 E-value=3.7e-19 Score=116.33 Aligned_cols=88 Identities=34% Similarity=0.381 Sum_probs=78.4
Q ss_pred CeEEEEcccCCC---CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511 1 MLAVQCKRWGEP---RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV 77 (91)
Q Consensus 1 m~a~~~~~~~~~---~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~ 77 (91)
||++++..++.+ +.+++.+.+.|. ++++||+||+.++++|+.|+....|.++....+|.++|+|++|+|+++|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~-~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v 79 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPE-PGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGP 79 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCC-CCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCc
Confidence 899999988776 578889999999 9999999999999999999999888765434568899999999999999999
Q ss_pred CC-CCCCCEEEee
Q psy3511 78 KH-FKVKNIVRSS 89 (91)
Q Consensus 78 ~~-~~~Gd~V~~~ 89 (91)
++ |++||+|++.
T Consensus 80 ~~~~~vGd~V~~~ 92 (324)
T cd08291 80 LAQSLIGKRVAFL 92 (324)
T ss_pred cccCCCCCEEEec
Confidence 86 9999999875
No 14
>KOG0024|consensus
Probab=99.80 E-value=1.5e-19 Score=117.66 Aligned_cols=87 Identities=33% Similarity=0.353 Sum_probs=74.0
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCC--CCCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL--PDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~--~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
|+|+++. ++.++++++.+.|+...|+||+|+++++|||.+|++.+....... .+.|+++|||.+|+|.++|+.|+
T Consensus 5 ~~A~vl~---g~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 5 NLALVLR---GKGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cceeEEE---ccCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 6778877 455588889999983499999999999999999999887665322 26899999999999999999999
Q ss_pred CCCCCCEEEeeC
Q psy3511 79 HFKVKNIVRSSK 90 (91)
Q Consensus 79 ~~~~Gd~V~~~~ 90 (91)
++++||||..-+
T Consensus 82 ~LkVGDrVaiEp 93 (354)
T KOG0024|consen 82 HLKVGDRVAIEP 93 (354)
T ss_pred ccccCCeEEecC
Confidence 999999998643
No 15
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.80 E-value=1.1e-18 Score=116.20 Aligned_cols=85 Identities=36% Similarity=0.506 Sum_probs=75.2
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++.+...++. +++++.+.|. ++++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus 2 ~~a~~~~~~~~~--l~~~~~~~P~-~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~ 77 (368)
T TIGR02818 2 SRAAVAWAAGQP--LKIEEVDVEM-PQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSV 77 (368)
T ss_pred ceEEEEecCCCC--eEEEEecCCC-CCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccC
Confidence 889998876544 8889999999 99999999999999999999998886542 3578999999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||||.+.
T Consensus 78 ~~GdrV~~~ 86 (368)
T TIGR02818 78 KVGDHVIPL 86 (368)
T ss_pred CCCCEEEEc
Confidence 999999764
No 16
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.80 E-value=8.3e-19 Score=116.60 Aligned_cols=85 Identities=29% Similarity=0.414 Sum_probs=75.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++...+.+ +++++.+.|+ ++++||+||+.+++||++|++.+.|.++ ...+|.++|||++|+|+++|+++++|
T Consensus 3 ~ka~~~~~~~~~--~~l~~~~~p~-~~~~evlIkv~a~gi~~~D~~~~~g~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~ 78 (369)
T cd08301 3 CKAAVAWEAGKP--LVIEEVEVAP-PQAMEVRIKILHTSLCHTDVYFWEAKGQ-TPLFPRILGHEAAGIVESVGEGVTDL 78 (369)
T ss_pred cEEEEEecCCCC--cEEEEeeCCC-CCCCeEEEEEEEEeeCchhHHHhcCCCC-CCCCCcccccccceEEEEeCCCCCcc
Confidence 789998876554 8889999999 9999999999999999999998888654 23568899999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||||++.
T Consensus 79 ~~GdrV~~~ 87 (369)
T cd08301 79 KPGDHVLPV 87 (369)
T ss_pred ccCCEEEEc
Confidence 999999864
No 17
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.80 E-value=1.2e-18 Score=114.49 Aligned_cols=85 Identities=28% Similarity=0.282 Sum_probs=73.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++.. ++.+++++.+.|. ++++||+||+.++++|++|+..+.+.+......|.++|||++|+|+++|++++.|
T Consensus 1 mka~~~~~---~~~l~~~~~~~p~-~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~ 76 (339)
T cd08239 1 MRGAVFPG---DRTVELREFPVPV-PGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHF 76 (339)
T ss_pred CeEEEEec---CCceEEEecCCCC-CCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccC
Confidence 89999974 4568999999999 9999999999999999999998876643222357899999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|+..
T Consensus 77 ~~Gd~V~~~ 85 (339)
T cd08239 77 RVGDRVMVY 85 (339)
T ss_pred CCCCEEEEC
Confidence 999999864
No 18
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.79 E-value=1.6e-18 Score=113.11 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=71.6
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecC-hhHHHHHhCCCCCC--CCCCcccccceEEEEEEeCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGIN-PVETYIRSGQYPNL--PDLPAILGTEVSGIVEEVGQGV 77 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~-~~d~~~~~g~~~~~--~~~p~~~g~e~~G~V~~vG~~~ 77 (91)
||++++.. ++.+++++.+.|. ++++||+||+++++|| .+|++.+.|.++.. ..+|.++|||++|+|+++|+++
T Consensus 2 ~ka~~~~~---~~~l~~~e~~~p~-~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v 77 (308)
T TIGR01202 2 TQAIVLSG---PNQIELREVTLTP-PSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT 77 (308)
T ss_pred ceEEEEeC---CCeEEEEEecCCC-CCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC
Confidence 68888873 5569999999999 9999999999999996 69998888875432 2568999999999999999998
Q ss_pred CCCCCCCEEEe
Q psy3511 78 KHFKVKNIVRS 88 (91)
Q Consensus 78 ~~~~~Gd~V~~ 88 (91)
.|++||||+.
T Consensus 78 -~~~vGdrV~~ 87 (308)
T TIGR01202 78 -GFRPGDRVFV 87 (308)
T ss_pred -CCCCCCEEEE
Confidence 5999999985
No 19
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.78 E-value=3.3e-18 Score=113.82 Aligned_cols=85 Identities=34% Similarity=0.472 Sum_probs=74.8
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++...+++ +++++.+.|. ++++||+||++++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus 3 ~~a~~~~~~~~~--~~~~~~~~P~-~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~ 78 (368)
T cd08300 3 CKAAVAWEAGKP--LSIEEVEVAP-PKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSV 78 (368)
T ss_pred ceEEEEecCCCC--cEEEEeecCC-CCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccC
Confidence 788888765544 8889999999 99999999999999999999998886542 3578899999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 79 ~vGdrV~~~ 87 (368)
T cd08300 79 KPGDHVIPL 87 (368)
T ss_pred CCCCEEEEc
Confidence 999999864
No 20
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.78 E-value=3.4e-18 Score=113.70 Aligned_cols=86 Identities=23% Similarity=0.308 Sum_probs=73.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++.+...+..+.++..+.+.|. ++++||+||+.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~p~-~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~ 88 (360)
T PLN02586 11 QKAFGWAARDPSGVLSPFHFSRRE-NGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLGKNVKKF 88 (360)
T ss_pred hheeEEEecCCCCCceEEeecCCC-CCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEECCCCCcc
Confidence 566666655556668888899998 99999999999999999999988876532 3568899999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|+.
T Consensus 89 ~vGdrV~~ 96 (360)
T PLN02586 89 KEGDRVGV 96 (360)
T ss_pred CCCCEEEE
Confidence 99999974
No 21
>PLN02827 Alcohol dehydrogenase-like
Probab=99.77 E-value=5.9e-18 Score=113.22 Aligned_cols=82 Identities=27% Similarity=0.331 Sum_probs=72.1
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++..++ +.+++++.+.|. ++++||+||+.++++|++|++.+.+.. .+|.++|||++|+|+++|+++++|
T Consensus 13 mka~~~~~~~--~~~~~~e~~~P~-~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~~~ 85 (378)
T PLN02827 13 CRAAVAWGAG--EALVMEEVEVSP-PQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVTEF 85 (378)
T ss_pred eEEEEEecCC--CCceEEEeecCC-CCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCccc
Confidence 8899887543 448889999999 999999999999999999999887642 357899999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 86 ~~GdrV~~~ 94 (378)
T PLN02827 86 EKGDHVLTV 94 (378)
T ss_pred CCCCEEEEe
Confidence 999999875
No 22
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.77 E-value=9.7e-18 Score=109.03 Aligned_cols=88 Identities=38% Similarity=0.571 Sum_probs=77.4
Q ss_pred CeEEEEcccCCC-CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~-~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~ 79 (91)
||++++.+++.+ +.+++.+.+.|. +.++|++||+.++++|+.|+....|.++.....|.++|+|++|+|+++|++++.
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~ 79 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPT-PGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKG 79 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCC-CCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCC
Confidence 899999877665 458899999999 999999999999999999999888876433456788999999999999999999
Q ss_pred CCCCCEEEee
Q psy3511 80 FKVKNIVRSS 89 (91)
Q Consensus 80 ~~~Gd~V~~~ 89 (91)
|++||+|++.
T Consensus 80 ~~~Gd~V~~~ 89 (324)
T cd08292 80 LQVGQRVAVA 89 (324)
T ss_pred CCCCCEEEec
Confidence 9999999875
No 23
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.77 E-value=1e-17 Score=111.37 Aligned_cols=84 Identities=29% Similarity=0.381 Sum_probs=74.2
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++...+++ +++++.+.|. ++++||+||+.++++|++|++.+.|.++ ..+|.++|+|++|+|+++|++++.|
T Consensus 3 ~ka~~~~~~~~~--~~~~~~~~p~-~~~~evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~ 77 (365)
T cd08277 3 CKAAVAWEAGKP--LVIEEIEVAP-PKANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNL 77 (365)
T ss_pred cEEEEEccCCCC--cEEEEEECCC-CCCCEEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCccC
Confidence 688888865543 8899999999 9999999999999999999999888654 3567899999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 78 ~~GdrV~~~ 86 (365)
T cd08277 78 KPGDKVIPL 86 (365)
T ss_pred CCCCEEEEC
Confidence 999999864
No 24
>KOG0025|consensus
Probab=99.76 E-value=4.5e-18 Score=109.55 Aligned_cols=88 Identities=39% Similarity=0.573 Sum_probs=81.4
Q ss_pred eEEEEcccCCC-CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 2 LAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 2 ~a~~~~~~~~~-~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|++++..++.| +.+++.+.+.|+ ...++|+||..|+.|||+|+...+|.|+..+++|.+-|.|++|+|+++|+++++|
T Consensus 21 kalvY~~hgdP~kVlql~~~~~p~-~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgf 99 (354)
T KOG0025|consen 21 KALVYSEHGDPAKVLQLKNLELPA-VPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGF 99 (354)
T ss_pred ceeeecccCCchhhheeecccCCC-CCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCcc
Confidence 78889999988 568999999998 7777899999999999999999999999989999999999999999999999999
Q ss_pred CCCCEEEeeC
Q psy3511 81 KVKNIVRSSK 90 (91)
Q Consensus 81 ~~Gd~V~~~~ 90 (91)
++||+|+...
T Consensus 100 k~Gd~VIp~~ 109 (354)
T KOG0025|consen 100 KPGDWVIPLS 109 (354)
T ss_pred CCCCeEeecC
Confidence 9999998653
No 25
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.75 E-value=2.4e-17 Score=108.50 Aligned_cols=84 Identities=26% Similarity=0.274 Sum_probs=72.3
Q ss_pred EEEEcccCCC--CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 3 AVQCKRWGEP--RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 3 a~~~~~~~~~--~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
++.+..++.+ ..+++++.|.|. ++++||+||+.++++|++|++.+.|.++. ...|.++|||++|+|+++|+++++|
T Consensus 1 ~~~~~~~g~~~~~~l~~~~~p~P~-~~~~evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~ 78 (329)
T TIGR02822 1 AWEVERPGPIEDGPLRFVERPVPR-PGPGELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGF 78 (329)
T ss_pred CeeeecCCcCCCCCceEEeCCCCC-CCCCeEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCccc
Confidence 3566667665 468999999999 99999999999999999999999886542 2346899999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|+.
T Consensus 79 ~~Gd~V~~ 86 (329)
T TIGR02822 79 AVGDRVGI 86 (329)
T ss_pred CCCCEEEE
Confidence 99999974
No 26
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.74 E-value=3e-17 Score=110.78 Aligned_cols=85 Identities=25% Similarity=0.304 Sum_probs=69.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHH-hCCCC-C----CCCCCcccccceEEEEEEeC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIR-SGQYP-N----LPDLPAILGTEVSGIVEEVG 74 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~-~g~~~-~----~~~~p~~~g~e~~G~V~~vG 74 (91)
||++++..+ ..+++++.+.|. ++++||+||+.++|||++|++.+ .+... . ...+|.++|||++|+|+++|
T Consensus 3 ~~a~~~~~~---~~l~~~e~p~P~-~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG 78 (410)
T cd08238 3 TKAWRMYGK---GDLRLEKFELPE-IADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVG 78 (410)
T ss_pred cEEEEEEcC---CceEEEecCCCC-CCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeC
Confidence 677777643 358999999999 99999999999999999999876 44321 1 01367899999999999999
Q ss_pred CCCC-CCCCCCEEEee
Q psy3511 75 QGVK-HFKVKNIVRSS 89 (91)
Q Consensus 75 ~~~~-~~~~Gd~V~~~ 89 (91)
++++ .|++||||++.
T Consensus 79 ~~v~~~~~vGdrV~~~ 94 (410)
T cd08238 79 KKWQGKYKPGQRFVIQ 94 (410)
T ss_pred CCccCCCCCCCEEEEc
Confidence 9998 69999999864
No 27
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.74 E-value=4.3e-17 Score=109.09 Aligned_cols=85 Identities=24% Similarity=0.297 Sum_probs=72.7
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
||+.+...+.++.++..+.+.|. ++++||+||+.+++||++|++.+.|.+.. ..+|.++|||++|+|+++|+++++|+
T Consensus 6 ~a~~~~~~~~~~~l~~~~~~~p~-~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~ 83 (375)
T PLN02178 6 KAFGWAANDESGVLSPFHFSRRE-NGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFK 83 (375)
T ss_pred eeEEEEEccCCCCceEEeecCCC-CCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccC
Confidence 55666666666668888888888 99999999999999999999998886532 24678999999999999999999999
Q ss_pred CCCEEEe
Q psy3511 82 VKNIVRS 88 (91)
Q Consensus 82 ~Gd~V~~ 88 (91)
+||+|..
T Consensus 84 vGdrV~~ 90 (375)
T PLN02178 84 EGDRVGV 90 (375)
T ss_pred CCCEEEE
Confidence 9999974
No 28
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.74 E-value=3.4e-17 Score=108.73 Aligned_cols=84 Identities=25% Similarity=0.272 Sum_probs=73.2
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
++++++.++++. ++.++.+.|+ ++++||+||+.++++|++|++.+.|.+.. ..+|.++|||++|+|+++|+++++|
T Consensus 10 ~~~~~~~~~~~~--~~~~~~~~p~-~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~ 85 (357)
T PLN02514 10 TTGWAARDPSGH--LSPYTYTLRK-TGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKF 85 (357)
T ss_pred EEEEEEecCCCC--ceEEeecCCC-CCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCcccc
Confidence 467888877655 8889999999 99999999999999999999988876532 3467899999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|+.
T Consensus 86 ~~Gd~V~~ 93 (357)
T PLN02514 86 TVGDIVGV 93 (357)
T ss_pred cCCCEEEE
Confidence 99999974
No 29
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.73 E-value=3.3e-17 Score=108.25 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=66.4
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC---CCCCCcccccceEEEEEEeCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN---LPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~---~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
|++++. +++++++++.+.|. +++||+||++++|||++|++.+.|.+.. ...+|.++|||++|+|+++|.+
T Consensus 4 ~~~~~~---~~~~~~~~~~~~P~--~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~-- 76 (341)
T cd08237 4 QVYRLV---RPKFFEVTYEEENL--REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG-- 76 (341)
T ss_pred cceEEe---ccceEEEeecCCCC--CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence 345554 45678999988873 8999999999999999999999886532 1257899999999999998764
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.|++||||+..
T Consensus 77 ~~~vGdrV~~~ 87 (341)
T cd08237 77 TYKVGTKVVMV 87 (341)
T ss_pred ccCCCCEEEEC
Confidence 79999999864
No 30
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.73 E-value=7.8e-17 Score=106.36 Aligned_cols=84 Identities=31% Similarity=0.320 Sum_probs=71.0
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC-CCC---------CCCCcccccceEEEE
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY-PNL---------PDLPAILGTEVSGIV 70 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~-~~~---------~~~p~~~g~e~~G~V 70 (91)
||++++.++ +.+.+++.+.|+ ++++||+||+.++++|+.|+..+.+.. ... ...|.++|+|++|+|
T Consensus 1 mka~~~~~~---~~l~~~~~~~p~-~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V 76 (351)
T cd08233 1 MKAARYHGR---KDIRVEEVPEPP-VKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVV 76 (351)
T ss_pred CceEEEecC---CceEEEeccCCC-CCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEE
Confidence 899999853 458899999999 999999999999999999988765431 100 135789999999999
Q ss_pred EEeCCCCCCCCCCCEEEe
Q psy3511 71 EEVGQGVKHFKVKNIVRS 88 (91)
Q Consensus 71 ~~vG~~~~~~~~Gd~V~~ 88 (91)
+++|+++++|++||+|++
T Consensus 77 ~~vG~~v~~~~~Gd~V~~ 94 (351)
T cd08233 77 VEVGSGVTGFKVGDRVVV 94 (351)
T ss_pred EEeCCCCCCCCCCCEEEE
Confidence 999999999999999986
No 31
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.73 E-value=1.5e-16 Score=103.78 Aligned_cols=88 Identities=30% Similarity=0.317 Sum_probs=78.8
Q ss_pred CeEEEEcccCC--CCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGE--PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~--~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
||+|++..++. ++.+++++.+.|. +.++|++|++.++++|+.|+....+.+.....+|.++|+|++|+|+.+|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 2 FRKLVVHRLSPNFREATSIVDVPVPL-PGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred ceEEEeccCCCCcccCceEEecCCCC-CCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 89999999877 6779999999998 99999999999999999999988876644346778999999999999999999
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.|++||+|++.
T Consensus 81 ~~~~Gd~V~~~ 91 (329)
T cd08250 81 DFKVGDAVATM 91 (329)
T ss_pred CCCCCCEEEEe
Confidence 99999999874
No 32
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.72 E-value=1.1e-16 Score=104.93 Aligned_cols=88 Identities=40% Similarity=0.515 Sum_probs=76.1
Q ss_pred CeEEEEcccCCC-CceEEEEecCCCCCCC-CeEEEEEeEEecChhHHHHHhCCCCCCCC----CCcccccceEEEEEEeC
Q psy3511 1 MLAVQCKRWGEP-RVLELTTVDKPGPCLD-DEVLVKVMAAGINPVETYIRSGQYPNLPD----LPAILGTEVSGIVEEVG 74 (91)
Q Consensus 1 m~a~~~~~~~~~-~~~~~~~~~~p~~~~~-~ev~v~v~~~~l~~~d~~~~~g~~~~~~~----~p~~~g~e~~G~V~~vG 74 (91)
||++.+.+++.+ +.+.+++.+.|. +.+ ++++||+.++++|+.|+....+..+.... .|.++|+|++|+|+++|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG 79 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPP-PGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVG 79 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCC-CCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeC
Confidence 999999988765 468999999998 777 99999999999999999988876543222 56789999999999999
Q ss_pred CCCCCCCCCCEEEee
Q psy3511 75 QGVKHFKVKNIVRSS 89 (91)
Q Consensus 75 ~~~~~~~~Gd~V~~~ 89 (91)
+++..|++||+|++.
T Consensus 80 ~~v~~~~~Gd~V~~~ 94 (341)
T cd08290 80 SGVKSLKPGDWVIPL 94 (341)
T ss_pred CCCCCCCCCCEEEec
Confidence 999999999999875
No 33
>PRK10083 putative oxidoreductase; Provisional
Probab=99.72 E-value=1.1e-16 Score=104.94 Aligned_cols=83 Identities=29% Similarity=0.462 Sum_probs=73.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.. ++.+++.+.+.|. ++++|++||+.++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++.|
T Consensus 1 m~a~~~~~---~~~~~~~~~~~p~-~~~~~vlV~v~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~ 75 (339)
T PRK10083 1 MKSIVIEK---PNSLAIEERPIPQ-PAAGEVRVKVKLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAVGEGVDAA 75 (339)
T ss_pred CeEEEEec---CCeeEEEeccCCC-CCCCeEEEEEEEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEECCCCccC
Confidence 89999985 4468899999999 99999999999999999999988876543 2568899999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|+.
T Consensus 76 ~~Gd~V~~ 83 (339)
T PRK10083 76 RIGERVAV 83 (339)
T ss_pred CCCCEEEE
Confidence 99999984
No 34
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.71 E-value=1.3e-16 Score=104.32 Aligned_cols=86 Identities=34% Similarity=0.450 Sum_probs=75.7
Q ss_pred eEEEEccc---CCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC
Q psy3511 2 LAVQCKRW---GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 2 ~a~~~~~~---~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
|||++.++ ++++.++..+.|.|. ++++||+||+.++++|+.|+..+.+..+. ..+|.++|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~ 78 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPK-PGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVT 78 (336)
T ss_pred CceeeccccCCCCcccceecccCCCC-CCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCC
Confidence 67888887 778889999999999 99999999999999999999888775432 34577899999999999999999
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.|++||+|+++
T Consensus 79 ~~~~Gd~V~~~ 89 (336)
T TIGR02817 79 LFKPGDEVWYA 89 (336)
T ss_pred CCCCCCEEEEc
Confidence 99999999875
No 35
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.71 E-value=2.8e-16 Score=102.12 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=75.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++..+++++.+++++.+.|. +.+++++|++.++++|+.|+....|.++....+|.++|+|++|+|+++ +++.|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~ 77 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDD-LPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRF 77 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCC-CCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCC
Confidence 899999988877779999999999 999999999999999999999988876544456788999999999998 45689
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 78 ~~Gd~V~~~ 86 (325)
T cd05280 78 REGDEVLVT 86 (325)
T ss_pred CCCCEEEEc
Confidence 999999864
No 36
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.71 E-value=2.5e-16 Score=103.85 Aligned_cols=83 Identities=29% Similarity=0.354 Sum_probs=69.1
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~ 79 (91)
||++++..++ .+++.+.+.|. + .++|++||+.++++|++|+........ ..+|.++|+|++|+|+++|+++++
T Consensus 1 Mka~~~~~~~---~~~~~~~~~P~-~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~ 74 (347)
T PRK10309 1 MKSVVNDTDG---IVRVAESPIPE-IKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDD 74 (347)
T ss_pred CceEEEeCCC---ceEEEECCCCC-CCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCC
Confidence 8999998643 48889999998 7 589999999999999999875422111 135688999999999999999999
Q ss_pred CCCCCEEEee
Q psy3511 80 FKVKNIVRSS 89 (91)
Q Consensus 80 ~~~Gd~V~~~ 89 (91)
|++||+|++.
T Consensus 75 ~~vGd~V~~~ 84 (347)
T PRK10309 75 LHPGDAVACV 84 (347)
T ss_pred CCCCCEEEEC
Confidence 9999999864
No 37
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.70 E-value=3.6e-16 Score=102.65 Aligned_cols=84 Identities=36% Similarity=0.518 Sum_probs=73.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.++++ .+++++.+.|. ++++|++||+.++++|+.|+..+.|..+. ..+|..+|+|++|+|+++|++++.|
T Consensus 1 m~a~~~~~~~~--~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~ 76 (333)
T cd08296 1 YKAVQVTEPGG--PLELVERDVPL-PGPGEVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRW 76 (333)
T ss_pred CeEEEEccCCC--CceEEeccCCC-CCCCEEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccC
Confidence 89999997644 48889999999 99999999999999999999988876532 3457789999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|++
T Consensus 77 ~~Gd~V~~ 84 (333)
T cd08296 77 KVGDRVGV 84 (333)
T ss_pred CCCCEEEe
Confidence 99999975
No 38
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.70 E-value=2.3e-16 Score=104.90 Aligned_cols=83 Identities=36% Similarity=0.524 Sum_probs=73.6
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++.+++.+ +++++.+.|. +.++|++||+.++++|+.|+....+.++ ...|.++|+|++|+|+++|+++..|
T Consensus 3 ~~a~~~~~~~~~--~~~~~~~~p~-~~~~~v~Vkv~a~gi~~~d~~~~~g~~~--~~~p~v~G~e~~G~V~~vG~~v~~~ 77 (365)
T cd08278 3 TTAAVVREPGGP--FVLEDVELDD-PRPDEVLVRIVATGICHTDLVVRDGGLP--TPLPAVLGHEGAGVVEAVGSAVTGL 77 (365)
T ss_pred cEEeeeccCCCc--ceEEEeecCC-CCCCeEEEEEEEeecCcccHHHhcCCCC--CCCCcccccceeEEEEEeCCCcccC
Confidence 899999876554 7888999998 9999999999999999999999888654 2457889999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|++
T Consensus 78 ~~Gd~V~~ 85 (365)
T cd08278 78 KPGDHVVL 85 (365)
T ss_pred CCCCEEEE
Confidence 99999985
No 39
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.70 E-value=2.7e-16 Score=104.13 Aligned_cols=84 Identities=35% Similarity=0.404 Sum_probs=74.1
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC--
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH-- 79 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~-- 79 (91)
|++++.+++ +.+++++.+.|. ++++|++||+.++++|+.|+....|.++. ..+|.++|+|++|+|+++|++++.
T Consensus 2 ka~~~~~~~--~~l~~~~~~~p~-~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 77 (361)
T cd08231 2 RAAVLTGPG--KPLEIREVPLPD-LEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDV 77 (361)
T ss_pred eEEEEcCCC--CCCEEEeccCCC-CCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCccccc
Confidence 788888766 359999999999 99999999999999999999998886642 356789999999999999999986
Q ss_pred ----CCCCCEEEee
Q psy3511 80 ----FKVKNIVRSS 89 (91)
Q Consensus 80 ----~~~Gd~V~~~ 89 (91)
|++||+|++.
T Consensus 78 ~~~~~~~Gd~V~~~ 91 (361)
T cd08231 78 AGEPLKVGDRVTWS 91 (361)
T ss_pred cCCccCCCCEEEEc
Confidence 9999999875
No 40
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.70 E-value=7e-16 Score=100.44 Aligned_cols=88 Identities=33% Similarity=0.355 Sum_probs=77.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||||++...+..+.+++.+.+.|. +.++|++|++.++++|+.|+....+.++.....|.++|+|++|+|+++|+++.+|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~ 79 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPE-PGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRF 79 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCC-CCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCC
Confidence 899999988766778998888887 8999999999999999999998887665444567889999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 80 ~~Gd~V~~~ 88 (336)
T cd08276 80 KVGDRVVPT 88 (336)
T ss_pred CCCCEEEEe
Confidence 999999875
No 41
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.70 E-value=3.9e-16 Score=102.35 Aligned_cols=86 Identities=35% Similarity=0.451 Sum_probs=75.1
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
||++++..++.+ +.+.+.+.|. +.+++++|++.++++|+.|+....+.+.. ...+|.++|+|++|+|+++|+++.
T Consensus 1 ~ka~~~~~~~~~--~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~ 77 (340)
T cd05284 1 MKAARLYEYGKP--LRLEDVPVPE-PGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVD 77 (340)
T ss_pred CeeeEeccCCCC--ceEEeCCCCC-CCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCC
Confidence 899999977644 8888889888 89999999999999999999988876642 335678999999999999999999
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.|++||+|++.
T Consensus 78 ~~~~Gd~V~~~ 88 (340)
T cd05284 78 GLKEGDPVVVH 88 (340)
T ss_pred cCcCCCEEEEc
Confidence 99999999864
No 42
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.70 E-value=7.4e-16 Score=100.35 Aligned_cols=88 Identities=43% Similarity=0.625 Sum_probs=76.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++.+++....+.+.+.+.|. +.++|++||+.++++|+.|+....+.++.....+.++|+|++|+|+++|+++..|
T Consensus 2 m~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 2 MRAVTLKGFGGVDVLKIGESPKPA-PKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred cEEEEEEecCCCcceEEEeCCCCC-CCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 899999988877778888888887 8999999999999999999988877654333456789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|+++
T Consensus 81 ~~Gd~V~~~ 89 (334)
T PTZ00354 81 KEGDRVMAL 89 (334)
T ss_pred CCCCEEEEe
Confidence 999999875
No 43
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.70 E-value=4.4e-16 Score=102.80 Aligned_cols=84 Identities=29% Similarity=0.322 Sum_probs=73.3
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.+++ .+++++.+.|. +.++|++||+.++++|++|++...+.+.. ...|.++|+|++|+|+++|+++++|
T Consensus 1 mka~~~~~~~---~~~l~~~~~p~-~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~ 75 (351)
T cd08285 1 MKAFAMLGIG---KVGWIEKPIPV-CGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDF 75 (351)
T ss_pred CceEEEccCC---ccEEEECCCCC-CCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCcc
Confidence 8999998654 37788888888 89999999999999999999888776532 3557899999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 76 ~~Gd~V~~~ 84 (351)
T cd08285 76 KPGDRVIVP 84 (351)
T ss_pred CCCCEEEEc
Confidence 999999863
No 44
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.70 E-value=2.8e-16 Score=103.73 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=65.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHh-CCCCC-CCCCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRS-GQYPN-LPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~-g~~~~-~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
||++++. ++..+++++.+.| ++++||+||+.+++||++|++.+. +.+.. ...+|.++|||++|+|+++ +++
T Consensus 5 ~~~~~~~---~~~~~~~~~~~~p--~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~ 77 (343)
T PRK09880 5 TQSCVVA---GKKDVAVTEQEIE--WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS 77 (343)
T ss_pred ceEEEEe---cCCceEEEecCCC--CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence 5677776 4555888888875 578999999999999999998875 33321 2357899999999999999 788
Q ss_pred CCCCCCEEEe
Q psy3511 79 HFKVKNIVRS 88 (91)
Q Consensus 79 ~~~~Gd~V~~ 88 (91)
.|++||+|+.
T Consensus 78 ~~~vGdrV~~ 87 (343)
T PRK09880 78 GLKEGQTVAI 87 (343)
T ss_pred cCCCCCEEEE
Confidence 9999999985
No 45
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.69 E-value=3.9e-16 Score=104.59 Aligned_cols=84 Identities=29% Similarity=0.366 Sum_probs=73.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~ 79 (91)
|||+++.. ++.+++++.+.|. + .+++|+||+.++++|++|+....|.++. .++|.++|+|++|+|+++|++++.
T Consensus 1 m~a~~~~~---~~~~~~~~~~~p~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~ 75 (386)
T cd08283 1 MKALVWHG---KGDVRVEEVPDPK-IEDPTDAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRN 75 (386)
T ss_pred CeeEEEec---CCCceEEeCCCCC-CCCCCeEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCC
Confidence 89999874 4568899999888 7 5999999999999999999999887654 346789999999999999999999
Q ss_pred CCCCCEEEee
Q psy3511 80 FKVKNIVRSS 89 (91)
Q Consensus 80 ~~~Gd~V~~~ 89 (91)
|++||+|++.
T Consensus 76 ~~~Gd~V~~~ 85 (386)
T cd08283 76 LKVGDRVVVP 85 (386)
T ss_pred CCCCCEEEEc
Confidence 9999999874
No 46
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.69 E-value=4.7e-16 Score=101.51 Aligned_cols=87 Identities=43% Similarity=0.675 Sum_probs=77.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++.+.+++.+..+++++.+.|. ++++|++||+.++++|+.|+....+.++. ..+|..+|+|++|+|+.+|+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~ 79 (327)
T PRK10754 2 AKRIEFHKHGGPEVLQAVEFTPAD-PAENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHI 79 (327)
T ss_pred ceEEEEeccCChhHeEEeeccCCC-CCCCEEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCCC
Confidence 899999999988899999999998 99999999999999999999888776542 2356789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 80 ~~Gd~V~~~ 88 (327)
T PRK10754 80 KVGDRVVYA 88 (327)
T ss_pred CCCCEEEEC
Confidence 999999753
No 47
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.69 E-value=4.7e-16 Score=102.55 Aligned_cols=86 Identities=36% Similarity=0.433 Sum_probs=74.0
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC-----------CCCCCcccccceEEE
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN-----------LPDLPAILGTEVSGI 69 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-----------~~~~p~~~g~e~~G~ 69 (91)
||++.+...+.+ +++.+.+.|+ +.++||+|++.++++|+.|+....+.++. ...+|.++|+|++|+
T Consensus 1 ~~a~~~~~~~~~--~~~~~~~~p~-~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~ 77 (350)
T cd08240 1 MKAAAVVEPGKP--LEEVEIDTPK-PPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGE 77 (350)
T ss_pred CeeEEeccCCCC--ceEEecCCCC-CCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEE
Confidence 899999876654 7888999999 99999999999999999999988775431 123467899999999
Q ss_pred EEEeCCCCCCCCCCCEEEee
Q psy3511 70 VEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 70 V~~vG~~~~~~~~Gd~V~~~ 89 (91)
|+++|++++.|++||+|++.
T Consensus 78 V~~vG~~v~~~~~Gd~V~~~ 97 (350)
T cd08240 78 VVAVGPDAADVKVGDKVLVY 97 (350)
T ss_pred EEeeCCCCCCCCCCCEEEEC
Confidence 99999999999999999865
No 48
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.69 E-value=2.3e-16 Score=104.91 Aligned_cols=85 Identities=33% Similarity=0.320 Sum_probs=67.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCc-ccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA-ILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~-~~g~e~~G~V~~vG~~~~~ 79 (91)
|+++++...... ..+++.+.|. +.+++|+||+.++|||.+|++.+.+..+.. ..+. ++|||++|+|+++| .++.
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~p~-~~p~~vlVkv~~~gICGSDlh~~~g~~~~~-~~~~~i~GHE~~G~V~evG-~~~~ 75 (350)
T COG1063 1 MKAAVVYVGGGD--VRLEEPPPPI-PGPGDVLIRVTATGICGSDLHIYRGGEPFV-PPGDIILGHEFVGEVVEVG-VVRG 75 (350)
T ss_pred CceeEEEecCCc--cccccCCCCC-CCCCeEEEEEEEEeEchhhhhhccCCCCCC-CCCCcccCccceEEEEEec-cccC
Confidence 778887764433 3366666665 789999999999999999999999875432 3333 89999999999999 7788
Q ss_pred CCCCCEEEeeC
Q psy3511 80 FKVKNIVRSSK 90 (91)
Q Consensus 80 ~~~Gd~V~~~~ 90 (91)
|++||||+..+
T Consensus 76 ~~~GdrVvv~~ 86 (350)
T COG1063 76 FKVGDRVVVEP 86 (350)
T ss_pred CCCCCEEEECC
Confidence 99999998754
No 49
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.69 E-value=4.5e-16 Score=102.30 Aligned_cols=88 Identities=31% Similarity=0.412 Sum_probs=74.0
Q ss_pred CeEEEEcccCCCCceEEEE-ecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC-------------------CCCCCc
Q psy3511 1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN-------------------LPDLPA 60 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~-~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-------------------~~~~p~ 60 (91)
||++.+..++.++.+.+.+ .+.|. +.+++++||+.++++|++|+....|.++. ...+|.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 79 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPT-PAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPR 79 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCC-CCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCc
Confidence 8999998777666677765 46777 89999999999999999999988775431 234678
Q ss_pred ccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511 61 ILGTEVSGIVEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 61 ~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~ 89 (91)
++|||++|+|+++|++++.|++||+|++.
T Consensus 80 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 108 (350)
T cd08274 80 IQGADIVGRVVAVGEGVDTARIGERVLVD 108 (350)
T ss_pred ccCCcceEEEEEeCCCCCCCCCCCEEEEe
Confidence 89999999999999999999999999873
No 50
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.69 E-value=8e-16 Score=100.28 Aligned_cols=87 Identities=36% Similarity=0.573 Sum_probs=77.9
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
|+|.+.+.+.++.+++++.+.|. +.+++++|++.++++|+.|+....+.++....+|..+|+|++|+|+.+|+++..|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPE-PAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE 80 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCC-CCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence 78999988888889999999998 89999999999999999999988876543335677899999999999999999999
Q ss_pred CCCEEEee
Q psy3511 82 VKNIVRSS 89 (91)
Q Consensus 82 ~Gd~V~~~ 89 (91)
+||+|.+.
T Consensus 81 ~Gd~V~~~ 88 (331)
T cd08273 81 VGDRVAAL 88 (331)
T ss_pred CCCEEEEe
Confidence 99999975
No 51
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.69 E-value=6.2e-16 Score=101.51 Aligned_cols=86 Identities=35% Similarity=0.478 Sum_probs=75.6
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++.+++ ...+++.+.+.|. +.++|++|++.++++|+.|+....+.++.....+..+|+|++|+|+++|++++.|
T Consensus 1 m~a~~~~~~~-~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~ 78 (341)
T cd08297 1 MKAAVVEEFG-EKPYEVKDVPVPE-PGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGL 78 (341)
T ss_pred CceEEeeccC-CCCceEEEeeCCC-CCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCC
Confidence 8999998776 5679999999998 9999999999999999999988877664333456689999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|++
T Consensus 79 ~~Gd~V~~ 86 (341)
T cd08297 79 KVGDRVGV 86 (341)
T ss_pred CCCCEEEE
Confidence 99999986
No 52
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.69 E-value=6.7e-16 Score=99.57 Aligned_cols=88 Identities=45% Similarity=0.771 Sum_probs=77.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++...+.+..+.+.+.+.|. +.+++++|++.++++|+.|+....+.+......|.++|+|++|+|+++|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPT-PGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGL 79 (325)
T ss_pred CceEEEcccCCcccceeeecCCCC-CCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCC
Confidence 899999887766778889999998 9999999999999999999988877654444677899999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 80 ~~Gd~v~~~ 88 (325)
T cd08253 80 KVGDRVWLT 88 (325)
T ss_pred CCCCEEEEe
Confidence 999999875
No 53
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.68 E-value=9.2e-16 Score=99.76 Aligned_cols=88 Identities=39% Similarity=0.512 Sum_probs=76.5
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.+.+.+..+++.+.+.|. +.+++++|++.++++|+.|+....|.+......|..+|+|++|+|+.+|+++..|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~ 79 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPE-PGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNV 79 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCC-CCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCC
Confidence 899999877777778888888887 8999999999999999999998877654323557789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 80 ~~Gd~V~~~ 88 (342)
T cd08266 80 KPGQRVVIY 88 (342)
T ss_pred CCCCEEEEc
Confidence 999999875
No 54
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.68 E-value=1.2e-15 Score=98.26 Aligned_cols=88 Identities=44% Similarity=0.616 Sum_probs=77.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.+.+.+..+++.+.+.|. +.+++++||+.++++|+.|+....+.+.....+|.++|+|++|+|+++|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~ 79 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPA-PGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGW 79 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCC-CCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCC
Confidence 899999987777778888888887 8999999999999999999988877654334567889999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 80 ~~Gd~V~~~ 88 (323)
T cd05276 80 KVGDRVCAL 88 (323)
T ss_pred CCCCEEEEe
Confidence 999999875
No 55
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.68 E-value=6.6e-16 Score=102.53 Aligned_cols=84 Identities=39% Similarity=0.543 Sum_probs=74.8
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+.+.+++.+ +++++.+.|. +.+++++|++.++++|+.|+....+.++ ..+|.++|+|++|+|+++|++++.|
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~p~-~~~~~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~vG~~v~~~ 75 (363)
T cd08279 1 MRAAVLHEVGKP--LEIEEVELDD-PGPGEVLVRIAAAGLCHSDLHVVTGDLP--APLPAVLGHEGAGVVEEVGPGVTGV 75 (363)
T ss_pred CeEEEEecCCCC--ceEEEeeCCC-CCCCeEEEEEEEeecCcHHHHHhcCCCC--CCCCccccccceEEEEEeCCCcccc
Confidence 899999987754 8889999999 9999999999999999999998887654 2456789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 76 ~~Gd~V~~~ 84 (363)
T cd08279 76 KPGDHVVLS 84 (363)
T ss_pred CCCCEEEEC
Confidence 999999873
No 56
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.68 E-value=1.2e-15 Score=98.59 Aligned_cols=88 Identities=44% Similarity=0.719 Sum_probs=77.2
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++..++.++.+.+++.+.|. +.+++++|++.++++|+.|+....+.+......+.++|+|++|+|+.+|+++..|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~ 79 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQ-PGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRF 79 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCC-CCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCC
Confidence 899999988877778888888887 8999999999999999999988877654333457789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 80 ~~Gd~V~~~ 88 (326)
T cd08272 80 RVGDEVYGC 88 (326)
T ss_pred CCCCEEEEc
Confidence 999999975
No 57
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.68 E-value=9.5e-16 Score=102.28 Aligned_cols=82 Identities=26% Similarity=0.310 Sum_probs=72.2
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~ 79 (91)
||++++..+ ..+++++.+.|. + .++|++||+.++++|+.|+..+.|.++ ..+|.++|+|++|+|+++|+++..
T Consensus 1 m~~~~~~~~---~~~~~~~~~~p~-~~~~~evlv~v~a~~i~~~D~~~~~g~~~--~~~p~~~g~e~~G~V~~vG~~v~~ 74 (375)
T cd08282 1 MKAVVYGGP---GNVAVEDVPDPK-IEHPTDAIVRITTTAICGSDLHMYRGRTG--AEPGLVLGHEAMGEVEEVGSAVES 74 (375)
T ss_pred CceEEEecC---CceeEEeCCCCC-CCCCCeEEEEEEEEeeCHHHHHHHcCCCC--CCCCceeccccEEEEEEeCCCCCc
Confidence 899998744 458899999988 6 799999999999999999999888654 245789999999999999999999
Q ss_pred CCCCCEEEe
Q psy3511 80 FKVKNIVRS 88 (91)
Q Consensus 80 ~~~Gd~V~~ 88 (91)
|++||+|++
T Consensus 75 ~~~Gd~V~~ 83 (375)
T cd08282 75 LKVGDRVVV 83 (375)
T ss_pred CCCCCEEEE
Confidence 999999986
No 58
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.68 E-value=8.8e-16 Score=100.83 Aligned_cols=83 Identities=30% Similarity=0.318 Sum_probs=73.3
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~ 79 (91)
||++.+..+ +.+.+.+.+.|. + .+++++||+.++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++.
T Consensus 1 ~ka~~~~~~---~~~~~~~~~~p~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~ 75 (347)
T cd05278 1 MKALVYLGP---GKIGLEEVPDPK-IQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKR 75 (347)
T ss_pred CceEEEecC---CceEEEEcCCCC-CCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccc
Confidence 899998854 448888999888 8 8999999999999999999988887653 456789999999999999999999
Q ss_pred CCCCCEEEe
Q psy3511 80 FKVKNIVRS 88 (91)
Q Consensus 80 ~~~Gd~V~~ 88 (91)
|++||+|++
T Consensus 76 ~~~Gd~V~~ 84 (347)
T cd05278 76 LKPGDRVSV 84 (347)
T ss_pred cCCCCEEEe
Confidence 999999986
No 59
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.68 E-value=1.4e-15 Score=98.80 Aligned_cols=88 Identities=36% Similarity=0.514 Sum_probs=75.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
||++.+.+++.+..+++.+.+.|. +.+++++|++.++++|+.|+....|..+. ....|.++|+|++|+|+++|+++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~ 79 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPV-PGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVD 79 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCC-CCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCC
Confidence 899999887777778888888777 89999999999999999999988776432 234567899999999999999999
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.|++||+|++.
T Consensus 80 ~~~~Gd~V~~~ 90 (324)
T cd08244 80 PAWLGRRVVAH 90 (324)
T ss_pred CCCCCCEEEEc
Confidence 99999999875
No 60
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.68 E-value=8.5e-16 Score=101.03 Aligned_cols=86 Identities=30% Similarity=0.293 Sum_probs=73.0
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC-C-CCCCCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY-P-NLPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~-~-~~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
||++++.+.+ +.+++.+.+.|. ++++|++||+.++++|+.|+.++.+.. . ....+|.++|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~p~-~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~ 77 (341)
T PRK05396 1 MKALVKLKAE--PGLWLTDVPVPE-PGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVT 77 (341)
T ss_pred CceEEEecCC--CceEEEECCCCC-CCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCC
Confidence 8999998755 459999999999 999999999999999999998776532 1 1124567899999999999999999
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.|++||+|++.
T Consensus 78 ~~~~Gd~V~~~ 88 (341)
T PRK05396 78 GFKVGDRVSGE 88 (341)
T ss_pred cCCCCCEEEEC
Confidence 99999999864
No 61
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.67 E-value=8.3e-16 Score=102.66 Aligned_cols=84 Identities=30% Similarity=0.405 Sum_probs=72.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++...++. +++++.|.|. +.++||+||+.++++|++|+....|.+. ..+|.++|+|++|+|+++|++++.|
T Consensus 8 ~~a~~~~~~~~~--~~l~~~p~p~-~~~~~vlvkv~~~gi~~~D~~~~~g~~~--~~~p~v~G~e~~G~V~~vG~~v~~~ 82 (373)
T cd08299 8 CKAAVLWEPKKP--FSIEEIEVAP-PKAHEVRIKIVATGICRSDDHVVSGKLV--TPFPVILGHEAAGIVESVGEGVTTV 82 (373)
T ss_pred eEEEEEecCCCC--cEEEEeecCC-CCCCEEEEEEEEEEcCcccHHHhcCCCC--CCCCccccccceEEEEEeCCCCccC
Confidence 677777765444 8889999999 9999999999999999999999888652 2467899999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 83 ~~Gd~V~~~ 91 (373)
T cd08299 83 KPGDKVIPL 91 (373)
T ss_pred CCCCEEEEC
Confidence 999999864
No 62
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.67 E-value=9.3e-16 Score=101.20 Aligned_cols=84 Identities=35% Similarity=0.351 Sum_probs=71.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--------CCCCCcccccceEEEEEE
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--------LPDLPAILGTEVSGIVEE 72 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--------~~~~p~~~g~e~~G~V~~ 72 (91)
||++++..+ ..+++++.+.|+ +.+++|+||+.++++|+.|++.+.|.+.. ...+|.++|+|++|+|++
T Consensus 1 mka~~~~~~---~~~~~~~~~~p~-~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~ 76 (350)
T cd08256 1 MRAVVCHGP---QDYRLEEVPVPR-PGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVE 76 (350)
T ss_pred CeeEEEecC---CceEEEECCCCC-CCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEE
Confidence 899999744 458899999999 99999999999999999999988775311 013567899999999999
Q ss_pred eCCCCC--CCCCCCEEEe
Q psy3511 73 VGQGVK--HFKVKNIVRS 88 (91)
Q Consensus 73 vG~~~~--~~~~Gd~V~~ 88 (91)
+|++++ +|++||+|++
T Consensus 77 vG~~v~~~~~~~Gd~V~~ 94 (350)
T cd08256 77 LGEGAEERGVKVGDRVIS 94 (350)
T ss_pred eCCCcccCCCCCCCEEEE
Confidence 999998 8999999986
No 63
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.67 E-value=1.5e-15 Score=98.90 Aligned_cols=85 Identities=36% Similarity=0.488 Sum_probs=74.2
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++..+ ++.+.+++.+.|. +.+++++|+++++++|+.|+....+.++. ...|.++|+|++|+|+.+|++++.|
T Consensus 1 m~a~~~~~~--~~~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~ 76 (332)
T cd08259 1 MKAAILHKP--NKPLQIEEVPDPE-PGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERF 76 (332)
T ss_pred CeEEEEecC--CCceEEEEccCCC-CCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccC
Confidence 899999863 3458889999998 99999999999999999999988876543 3457789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 77 ~~Gd~V~~~ 85 (332)
T cd08259 77 KPGDRVILY 85 (332)
T ss_pred CCCCEEEEC
Confidence 999999875
No 64
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.67 E-value=1.3e-15 Score=99.53 Aligned_cols=82 Identities=37% Similarity=0.461 Sum_probs=73.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++.+++ .+.+.+.+.|+ ++++||+||+.++++|+.|+....|.++. .+|.++|+|++|+|+.+|++++.|
T Consensus 1 ~~a~~~~~~~---~~~~~~~~~~~-l~~~~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~ 74 (334)
T cd08234 1 MKALVYEGPG---ELEVEEVPVPE-PGPDEVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGF 74 (334)
T ss_pred CeeEEecCCC---ceEEEeccCCC-CCCCeEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCC
Confidence 8999998654 58889999999 99999999999999999999988887643 367789999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|++
T Consensus 75 ~~Gd~V~~ 82 (334)
T cd08234 75 KVGDRVAV 82 (334)
T ss_pred CCCCEEEE
Confidence 99999986
No 65
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.67 E-value=1.8e-15 Score=98.49 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=74.5
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++..+++++.+++++.+.|. ++++|++|++.++++|+.|+....+.+.....+|..+|+|++|+|++ ++++.|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~ 77 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESD-LPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRF 77 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCC-CCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCC
Confidence 899999988887789999999999 99999999999999999999888776432234567889999999999 777789
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 78 ~~Gd~V~~~ 86 (324)
T cd08288 78 KPGDRVVLT 86 (324)
T ss_pred CCCCEEEEC
Confidence 999999874
No 66
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.67 E-value=8.9e-16 Score=101.53 Aligned_cols=81 Identities=26% Similarity=0.312 Sum_probs=66.8
Q ss_pred EEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy3511 4 VQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVK 83 (91)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~G 83 (91)
+++.+++.+ +++++.+.|. ++++||+||+.++++|++|+....+.+.....+|.++|||++|+|+++|++++.+ +|
T Consensus 2 ~~~~~~g~~--~~~~~~p~P~-~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~G 77 (349)
T TIGR03201 2 WMMTEPGKP--MVKTRVEIPE-LGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IG 77 (349)
T ss_pred ceEecCCCC--ceEEeccCCC-CCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CC
Confidence 445555543 8888999999 9999999999999999999987744432223567899999999999999999887 99
Q ss_pred CEEEe
Q psy3511 84 NIVRS 88 (91)
Q Consensus 84 d~V~~ 88 (91)
|+|+.
T Consensus 78 drV~~ 82 (349)
T TIGR03201 78 KAVIV 82 (349)
T ss_pred CEEEE
Confidence 99986
No 67
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.66 E-value=2.3e-15 Score=97.23 Aligned_cols=82 Identities=26% Similarity=0.208 Sum_probs=71.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.+.+ +..+++.+.+.|. +.++|++||+.++++|+.|+...... ..+.++|+|++|+|+++|+++..|
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~p~-~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~ 73 (305)
T cd08270 1 MRALVVDPDA-PLRLRLGEVPDPQ-PAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGP 73 (305)
T ss_pred CeEEEEccCC-CceeEEEecCCCC-CCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCC
Confidence 8999998765 7778888999999 99999999999999999999876521 225689999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 74 ~~Gd~V~~~ 82 (305)
T cd08270 74 AVGARVVGL 82 (305)
T ss_pred CCCCEEEEe
Confidence 999999875
No 68
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.66 E-value=5e-16 Score=102.27 Aligned_cols=85 Identities=39% Similarity=0.491 Sum_probs=74.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++..++ +..+++++.+.|. ++++|++|++.++++|+.|+....+.+ ....+.++|+|++|+|+++|++++.|
T Consensus 1 m~a~~~~~~~-~~~~~~~~~~~p~-~~~~ev~i~v~~~~i~~~d~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v~~~ 76 (339)
T cd08249 1 QKAAVLTGPG-GGLLVVVDVPVPK-PGPDEVLVKVKAVALNPVDWKHQDYGF--IPSYPAILGCDFAGTVVEVGSGVTRF 76 (339)
T ss_pred CceEEeccCC-CCcccccCCCCCC-CCCCEEEEEEEEEEcCchheeeeeccc--ccCCCceeeeeeeEEEEEeCCCcCcC
Confidence 8999999877 7779999999999 999999999999999999988765543 12346789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|+++
T Consensus 77 ~~Gd~V~~~ 85 (339)
T cd08249 77 KVGDRVAGF 85 (339)
T ss_pred CCCCEEEEE
Confidence 999999976
No 69
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.66 E-value=1.7e-15 Score=98.88 Aligned_cols=86 Identities=41% Similarity=0.499 Sum_probs=76.3
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++.+..++++. +.+.+.+.|. +++++|+|++.++++|+.|+....+.++.....|.++|+|++|+|+.+|+++..|
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~ 78 (338)
T cd08254 1 MKAWRFHKGSKGL-LVLEEVPVPE-PGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNF 78 (338)
T ss_pred CeeEEEecCCCCc-eEEeccCCCC-CCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccC
Confidence 8999999887776 7888888888 8999999999999999999999888765334567789999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|++
T Consensus 79 ~~Gd~V~~ 86 (338)
T cd08254 79 KVGDRVAV 86 (338)
T ss_pred CCCCEEEE
Confidence 99999986
No 70
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.66 E-value=1.9e-15 Score=98.99 Aligned_cols=83 Identities=28% Similarity=0.309 Sum_probs=71.6
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.+++.. ..+++.+.|. +.++|++||+.++++|+.|+....+.++. ..|.++|+|++|+|+++|++++.|
T Consensus 1 mka~~~~~~~~~--~~~~~~~~p~-~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~ 75 (338)
T PRK09422 1 MKAAVVNKDHTG--DVVVEKTLRP-LKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSL 75 (338)
T ss_pred CeEEEecCCCCC--ceEEEecCCC-CCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccC
Confidence 899999976654 2278889998 99999999999999999999888776532 236789999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|++
T Consensus 76 ~~Gd~V~~ 83 (338)
T PRK09422 76 KVGDRVSI 83 (338)
T ss_pred CCCCEEEE
Confidence 99999985
No 71
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.66 E-value=1.7e-15 Score=99.70 Aligned_cols=84 Identities=32% Similarity=0.387 Sum_probs=72.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~ 79 (91)
||++++.+++ .+++++.+.|+ + .++||+|++.++++|+.|+....|.++. ..+|.++|+|++|+|+++|++++.
T Consensus 1 m~a~~~~~~~---~~~~~~~~~p~-~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~v~~ 75 (345)
T cd08286 1 MKALVYHGPG---KISWEDRPKPT-IQEPTDAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEVGSAVTN 75 (345)
T ss_pred CceEEEecCC---ceeEEecCCCC-CCCCCeEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEeccCccc
Confidence 8999998654 48888999888 5 7999999999999999999998887643 244788999999999999999999
Q ss_pred CCCCCEEEee
Q psy3511 80 FKVKNIVRSS 89 (91)
Q Consensus 80 ~~~Gd~V~~~ 89 (91)
|++||+|++.
T Consensus 76 ~~~Gd~V~~~ 85 (345)
T cd08286 76 FKVGDRVLIS 85 (345)
T ss_pred cCCCCEEEEC
Confidence 9999999864
No 72
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.66 E-value=2.7e-15 Score=97.72 Aligned_cols=86 Identities=38% Similarity=0.464 Sum_probs=74.2
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||+|+..+. .+..+++++.+.|. +.+++++|++.++++|+.|++...+.+. ....|.++|+|++|+|+++|++++.|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~p~-~~~~~v~V~v~~~~l~~~d~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~ 77 (306)
T cd08258 1 MKALVKTGP-GPGNVELREVPEPE-PGPGEVLIKVAAAGICGSDLHIYKGDYD-PVETPVVLGHEFSGTIVEVGPDVEGW 77 (306)
T ss_pred CeeEEEecC-CCCceEEeecCCCC-CCCCeEEEEEEEEEechhhHHHHcCCCC-cCCCCeeeccceEEEEEEECCCcCcC
Confidence 899998763 34569999999999 9999999999999999999988877652 12446789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 78 ~~Gd~V~~~ 86 (306)
T cd08258 78 KVGDRVVSE 86 (306)
T ss_pred CCCCEEEEc
Confidence 999999874
No 73
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.66 E-value=1.7e-15 Score=100.67 Aligned_cols=83 Identities=31% Similarity=0.460 Sum_probs=73.5
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC-
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH- 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~- 79 (91)
||+|++..++.+ +.+.+.+.|. +.++||+|++.++++|+.|+....+.++. .+|.++|+|++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~--~~~~~~~~~~-~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~ 75 (367)
T cd08263 1 MKAAVLKGPNPP--LTIEEIPVPR-PKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENP 75 (367)
T ss_pred CeeEEEecCCCC--cEEEEeeCCC-CCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCC
Confidence 899999877543 7888889888 89999999999999999999988876643 56788999999999999999988
Q ss_pred --CCCCCEEEe
Q psy3511 80 --FKVKNIVRS 88 (91)
Q Consensus 80 --~~~Gd~V~~ 88 (91)
|++||+|++
T Consensus 76 ~~~~~Gd~V~~ 86 (367)
T cd08263 76 YGLSVGDRVVG 86 (367)
T ss_pred CcCCCCCEEEE
Confidence 999999987
No 74
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.66 E-value=1.5e-15 Score=99.81 Aligned_cols=88 Identities=34% Similarity=0.533 Sum_probs=74.4
Q ss_pred CeEEEEcccCCCC-ceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCC--------------CCCCCCccccc
Q psy3511 1 MLAVQCKRWGEPR-VLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYP--------------NLPDLPAILGT 64 (91)
Q Consensus 1 m~a~~~~~~~~~~-~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~--------------~~~~~p~~~g~ 64 (91)
||++++.+++.++ .+++++.+.|. + .++||+|++.++++|+.|+....+... .....|.++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~ 79 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPV-IRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGR 79 (350)
T ss_pred CceEEecccCCCcceeeecccCCCC-CCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecc
Confidence 8999998887754 47888989888 7 599999999999999999998876421 02355789999
Q ss_pred ceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511 65 EVSGIVEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 65 e~~G~V~~vG~~~~~~~~Gd~V~~~ 89 (91)
|++|+|+++|++++.|++||+|++.
T Consensus 80 e~~G~v~~vG~~v~~~~~Gd~V~~~ 104 (350)
T cd08248 80 DCSGVVVDIGSGVKSFEIGDEVWGA 104 (350)
T ss_pred eeEEEEEecCCCcccCCCCCEEEEe
Confidence 9999999999999999999999874
No 75
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.66 E-value=1.4e-15 Score=99.91 Aligned_cols=82 Identities=27% Similarity=0.394 Sum_probs=71.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~ 79 (91)
||+++++. +..+++.+.+.|. + +++|++||+.++++|++|+....|.++. ..|.++|+|++|+|+++|+++..
T Consensus 1 m~~~~~~~---~~~~~~~~~~~p~-~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~ 74 (345)
T cd08287 1 MRATVIHG---PGDIRVEEVPDPV-IEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTS 74 (345)
T ss_pred CceeEEec---CCceeEEeCCCCC-CCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCc
Confidence 89999984 3358899999988 5 8999999999999999999888776542 34678999999999999999999
Q ss_pred CCCCCEEEe
Q psy3511 80 FKVKNIVRS 88 (91)
Q Consensus 80 ~~~Gd~V~~ 88 (91)
|++||+|++
T Consensus 75 ~~~Gd~V~~ 83 (345)
T cd08287 75 VKPGDFVIA 83 (345)
T ss_pred cCCCCEEEe
Confidence 999999986
No 76
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.65 E-value=1.4e-15 Score=100.00 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=62.1
Q ss_pred CCceEEEEecCCCCC-CCCeEEEEEeEEecChhHHHHHhCCC--CCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511 12 PRVLELTTVDKPGPC-LDDEVLVKVMAAGINPVETYIRSGQY--PNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS 88 (91)
Q Consensus 12 ~~~~~~~~~~~p~~~-~~~ev~v~v~~~~l~~~d~~~~~g~~--~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~ 88 (91)
++.+++.+.+.|. + ++|||+||++++|||+.|+....... .+...+|.++|+|++|+|+++|++++.|++||+|++
T Consensus 20 ~~~~~~~~~~~p~-~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 98 (345)
T cd08293 20 AENFRVEECTLPD-ELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTS 98 (345)
T ss_pred ccceEEEeccCCC-CCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEe
Confidence 3678999999998 6 49999999999999999864332111 112346778999999999999999999999999986
Q ss_pred e
Q psy3511 89 S 89 (91)
Q Consensus 89 ~ 89 (91)
+
T Consensus 99 ~ 99 (345)
T cd08293 99 F 99 (345)
T ss_pred c
Confidence 4
No 77
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.65 E-value=3.3e-15 Score=98.30 Aligned_cols=84 Identities=35% Similarity=0.523 Sum_probs=74.5
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||||++.+++.+ +.+++.+.|. +.+++++|++.++++|+.|+....+.++. ..+|..+|+|++|+|+++|++++.|
T Consensus 1 m~a~~~~~~~~~--~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~ 76 (345)
T cd08260 1 MRAAVYEEFGEP--LEIREVPDPE-PPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRW 76 (345)
T ss_pred CeeEEEecCCCC--cEEEEccCCC-CCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccC
Confidence 999999877765 8888999998 89999999999999999999988886542 3457889999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|++
T Consensus 77 ~~Gd~V~~ 84 (345)
T cd08260 77 RVGDRVTV 84 (345)
T ss_pred CCCCEEEE
Confidence 99999986
No 78
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.65 E-value=3.5e-15 Score=97.66 Aligned_cols=85 Identities=39% Similarity=0.473 Sum_probs=74.5
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.+++. .+++++.+.|. +.++|++|++.++++|+.|+....+.++. ..+|.++|+|++|+|+++|++++.+
T Consensus 1 m~a~~~~~~~~--~~~~~~~~~~~-~~~~~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~ 76 (334)
T PRK13771 1 MKAVILPGFKQ--GYRIEEVPDPK-PGKDEVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGF 76 (334)
T ss_pred CeeEEEcCCCC--CcEEEeCCCCC-CCCCeEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccC
Confidence 89999987765 38899999999 99999999999999999999888776542 3456789999999999999999889
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 77 ~~G~~V~~~ 85 (334)
T PRK13771 77 KPGDRVASL 85 (334)
T ss_pred CCCCEEEEC
Confidence 999999875
No 79
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.65 E-value=3e-15 Score=98.29 Aligned_cols=84 Identities=36% Similarity=0.359 Sum_probs=73.0
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||+|.+++++ .+.+++.+.|+ +.+++++||+.++++|+.|+....+.+. ....|.++|+|++|+|+++|++++.|
T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~-l~~~~v~i~v~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~G~~v~~~ 75 (343)
T cd08235 1 MKAAVLHGPN---DVRLEEVPVPE-PGPGEVLVKVRACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEVGDGVTGF 75 (343)
T ss_pred CeEEEEecCC---ceEEEEccCCC-CCCCeEEEEEEEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEeeCCCCCCC
Confidence 8999998654 48888999998 8999999999999999999998877653 23446789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 76 ~~Gd~V~~~ 84 (343)
T cd08235 76 KVGDRVFVA 84 (343)
T ss_pred CCCCEEEEc
Confidence 999999974
No 80
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.65 E-value=4.5e-15 Score=96.82 Aligned_cols=85 Identities=34% Similarity=0.460 Sum_probs=72.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++..++ .+.+++.+.+.+. ++++|++|++.++++|+.|+....+.. ...+|.++|+|++|+|+++|++++.|
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ev~v~v~~~~i~~~d~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v~~~ 76 (325)
T cd08264 1 MKALVFEKSG-IENLKVEDVKDPK-PGPGEVLIRVKMAGVNPVDYNVINAVK--VKPMPHIPGAEFAGVVEEVGDHVKGV 76 (325)
T ss_pred CeeEEeccCC-CCceEEEeccCCC-CCCCeEEEEEEEEEechHHHHHHhCCC--CCCCCeecccceeEEEEEECCCCCCC
Confidence 8999998766 6678888888887 999999999999999999998876421 12346789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 77 ~~Gd~V~~~ 85 (325)
T cd08264 77 KKGDRVVVY 85 (325)
T ss_pred CCCCEEEEC
Confidence 999999864
No 81
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.65 E-value=2.7e-15 Score=98.50 Aligned_cols=84 Identities=29% Similarity=0.270 Sum_probs=71.6
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC----------CCCCCCcccccceEEEE
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP----------NLPDLPAILGTEVSGIV 70 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~----------~~~~~p~~~g~e~~G~V 70 (91)
||++++... .+++++.+.|+ +++++|+|++.++++|+.|++...|... .....|.++|+|++|+|
T Consensus 1 m~a~~~~~~----~~~~~~~~~p~-~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V 75 (341)
T cd08262 1 MRAAVFRDG----PLVVRDVPDPE-PGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEV 75 (341)
T ss_pred CceEEEeCC----ceEEEecCCCC-CCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEE
Confidence 899998743 58889999999 9999999999999999999998877321 01235678999999999
Q ss_pred EEeCCCCCC-CCCCCEEEee
Q psy3511 71 EEVGQGVKH-FKVKNIVRSS 89 (91)
Q Consensus 71 ~~vG~~~~~-~~~Gd~V~~~ 89 (91)
+++|++++. |++||+|++.
T Consensus 76 ~~vG~~v~~~~~~Gd~V~~~ 95 (341)
T cd08262 76 VDYGPGTERKLKVGTRVTSL 95 (341)
T ss_pred EEeCCCCcCCCCCCCEEEec
Confidence 999999987 9999999975
No 82
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.64 E-value=4.8e-15 Score=96.85 Aligned_cols=86 Identities=40% Similarity=0.517 Sum_probs=74.5
Q ss_pred CeEEEEcccCCC--CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGEP--RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~~--~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
||++++.+.+.+ +.+++.+.+.|. +.++||+||+.++++|+.|+....|.++. ..+|.++|+|++|+|+++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~ 78 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPE-PGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVT 78 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCC-CCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCC
Confidence 899999877643 458888888888 89999999999999999999988876543 35578999999999999999999
Q ss_pred CCCCCCEEEe
Q psy3511 79 HFKVKNIVRS 88 (91)
Q Consensus 79 ~~~~Gd~V~~ 88 (91)
.|++||+|++
T Consensus 79 ~~~~Gd~V~~ 88 (329)
T cd08298 79 RFSVGDRVGV 88 (329)
T ss_pred CCcCCCEEEE
Confidence 9999999975
No 83
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.64 E-value=4.6e-15 Score=96.98 Aligned_cols=87 Identities=37% Similarity=0.471 Sum_probs=75.4
Q ss_pred CeEEEEcccCCCC---ceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511 1 MLAVQCKRWGEPR---VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV 77 (91)
Q Consensus 1 m~a~~~~~~~~~~---~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~ 77 (91)
||++++.+++.++ .+.+++.+.|. +.+++++|++.++++|+.|+....+.++ ....+.++|+|++|+|+.+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v 78 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPV-PGGRDLLVRVEAVSVNPVDTKVRAGGAP-VPGQPKILGWDASGVVEAVGSEV 78 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCC-CCCCEEEEEEEEEEcCHHHHHHHcCCCC-CCCCCcccccceEEEEEEcCCCC
Confidence 8999999887765 58888888888 8999999999999999999988777554 22456789999999999999999
Q ss_pred CCCCCCCEEEee
Q psy3511 78 KHFKVKNIVRSS 89 (91)
Q Consensus 78 ~~~~~Gd~V~~~ 89 (91)
..|++||+|++.
T Consensus 79 ~~~~~Gd~V~~~ 90 (336)
T cd08252 79 TLFKVGDEVYYA 90 (336)
T ss_pred CCCCCCCEEEEc
Confidence 999999999875
No 84
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.64 E-value=5e-15 Score=96.45 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=73.6
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
||+++...++++.+++++.|.|. +.+++|+||+.++++|+.|+....|.+......|..+|+|++|+|+. .++..|+
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 77 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSD-LPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFR 77 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCC-CCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCC
Confidence 68888888888889999999999 99999999999999999999988886533234578899999999998 5667899
Q ss_pred CCCEEEee
Q psy3511 82 VKNIVRSS 89 (91)
Q Consensus 82 ~Gd~V~~~ 89 (91)
+||+|++.
T Consensus 78 ~Gd~V~~~ 85 (323)
T TIGR02823 78 EGDEVIVT 85 (323)
T ss_pred CCCEEEEc
Confidence 99999865
No 85
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.64 E-value=3.9e-15 Score=97.80 Aligned_cols=83 Identities=37% Similarity=0.398 Sum_probs=72.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++++++ .+.+++.+.|+ ++++|++||+.++++|+.|+..+.+.+. ...|.++|+|++|+|+++|+++..|
T Consensus 1 ~~a~~~~~~~---~l~~~~~~~~~-l~~~~v~v~v~~~~~n~~d~~~~~~~~~--~~~~~~~g~~~~G~V~~~g~~v~~~ 74 (343)
T cd08236 1 MKALVLTGPG---DLRYEDIPKPE-PGPGEVLVKVKACGICGSDIPRYLGTGA--YHPPLVLGHEFSGTVEEVGSGVDDL 74 (343)
T ss_pred CeeEEEecCC---ceeEEecCCCC-CCCCeEEEEEEEEEECccchHhhcCCCC--CCCCcccCcceEEEEEEECCCCCcC
Confidence 8999998753 48888999998 9999999999999999999998877652 2356789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 75 ~~Gd~V~~~ 83 (343)
T cd08236 75 AVGDRVAVN 83 (343)
T ss_pred CCCCEEEEc
Confidence 999999875
No 86
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.64 E-value=5.1e-15 Score=96.43 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=71.2
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++...++++.+.+++.+.|. +.++|++||+.++++|+.|.....+.......+|.++|+|++|+|++. ++..|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~-~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~--~~~~~ 77 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDD-LPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVES--NDPRF 77 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCC-CCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEc--CCCCC
Confidence 899999988877778899999998 999999999999999999987654322112245788999999999995 45679
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 78 ~~Gd~V~~~ 86 (326)
T cd08289 78 KPGDEVIVT 86 (326)
T ss_pred CCCCEEEEc
Confidence 999999864
No 87
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.63 E-value=5.1e-15 Score=97.15 Aligned_cols=83 Identities=39% Similarity=0.498 Sum_probs=73.0
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++..+ ..+.+.+.+.|. +.++|++|++.++++|+.|+....+.++.. .+|.++|+|++|+|+.+|++++.|
T Consensus 1 ~~a~~~~~~---~~~~~~~~~~~~-~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~ 75 (337)
T cd08261 1 MKALVCEKP---GRLEVVDIPEPV-PGAGEVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGVAGL 75 (337)
T ss_pred CeEEEEeCC---CceEEEECCCCC-CCCCeEEEEEEEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEeCCCCCCC
Confidence 899999864 358889999999 999999999999999999999888765432 446789999999999999999999
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|++
T Consensus 76 ~~Gd~V~~ 83 (337)
T cd08261 76 KVGDRVVV 83 (337)
T ss_pred CCCCEEEE
Confidence 99999986
No 88
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.63 E-value=6.7e-15 Score=95.14 Aligned_cols=88 Identities=40% Similarity=0.628 Sum_probs=75.8
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++.+.+.+.+..+.+.+.+.|. +++++++|++.++++|+.|+....+.+......+..+|+|++|+|+.+|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~ 79 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPA-PGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGF 79 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCC-CCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcC
Confidence 899999877777778888888887 8999999999999999999988776554333456789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 80 ~~Gd~V~~~ 88 (328)
T cd08268 80 AVGDRVSVI 88 (328)
T ss_pred CCCCEEEec
Confidence 999999875
No 89
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.63 E-value=5.1e-15 Score=97.21 Aligned_cols=83 Identities=34% Similarity=0.354 Sum_probs=72.1
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCC-CCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~ 79 (91)
||+|++..+ ..+.+++.+.|+ +. ++||+|++.++++|+.|+....+.++ ...|..+|+|++|+|+++|++++.
T Consensus 1 ~~a~~~~~~---~~~~~~~~~~p~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~vG~~v~~ 74 (344)
T cd08284 1 MKAVVFKGP---GDVRVEEVPIPQ-IQDPTDAIVKVTAAAICGSDLHIYRGHIP--STPGFVLGHEFVGEVVEVGPEVRT 74 (344)
T ss_pred CeeEEEecC---CCceEEeccCCC-CCCCCeEEEEEEEeeccccchhhhcCCCC--CCCCcccccceEEEEEeeCCCccc
Confidence 899999754 458899999998 75 99999999999999999988877654 244678999999999999999999
Q ss_pred CCCCCEEEee
Q psy3511 80 FKVKNIVRSS 89 (91)
Q Consensus 80 ~~~Gd~V~~~ 89 (91)
+++||+|++.
T Consensus 75 ~~~Gd~V~~~ 84 (344)
T cd08284 75 LKVGDRVVSP 84 (344)
T ss_pred cCCCCEEEEc
Confidence 9999999874
No 90
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.62 E-value=1.5e-14 Score=93.76 Aligned_cols=87 Identities=34% Similarity=0.407 Sum_probs=74.9
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++++.+++..+++.+++.+.|. +.+++++|++.++++|+.|+....+.+.. ...+..+|+|++|+|+.+|+++..|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~ 78 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPG-PGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGW 78 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCC-CCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEeCCCCCcC
Confidence 899999977654469999999999 99999999999999999999887665422 1236789999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 79 ~~Gd~V~~~ 87 (325)
T cd08271 79 KVGDRVAYH 87 (325)
T ss_pred CCCCEEEec
Confidence 999999875
No 91
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.62 E-value=7.9e-15 Score=95.55 Aligned_cols=77 Identities=34% Similarity=0.392 Sum_probs=67.8
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
|||+++.++ ..+++++.+.|+ ++++|++||+.++++|+.|.....+.++ .|.++|+|++|+|+++|++ +
T Consensus 1 ~~a~~~~~~---~~~~~~~~~~p~-~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~ 69 (319)
T cd08242 1 MKALVLDGG---LDLRVEDLPKPE-PPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---E 69 (319)
T ss_pred CeeEEEeCC---CcEEEEECCCCC-CCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---C
Confidence 899999853 359999999999 9999999999999999999998887653 4678999999999999988 6
Q ss_pred CCCCEEEe
Q psy3511 81 KVKNIVRS 88 (91)
Q Consensus 81 ~~Gd~V~~ 88 (91)
++||+|..
T Consensus 70 ~~G~~V~~ 77 (319)
T cd08242 70 LVGKRVVG 77 (319)
T ss_pred CCCCeEEE
Confidence 79999974
No 92
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.62 E-value=7.3e-15 Score=96.61 Aligned_cols=82 Identities=24% Similarity=0.303 Sum_probs=71.9
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
|+|+.++.+ .++++++.+.|. +.++|++||+.++++|+.|+....+.+. ...+|.++|+|++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~--~~~~~~~~~~p~-~~~~evlirv~a~~i~~~d~~~~~g~~~-~~~~p~~~g~e~~G~V~~vG~~v~~~~ 76 (337)
T cd05283 1 KGYAARDAS--GKLEPFTFERRP-LGPDDVDIKITYCGVCHSDLHTLRNEWG-PTKYPLVPGHEIVGIVVAVGSKVTKFK 76 (337)
T ss_pred CceEEecCC--CCceEEeccCCC-CCCCeEEEEEEEecccchHHHHhcCCcC-CCCCCcccCcceeeEEEEECCCCcccC
Confidence 467777655 569999999999 9999999999999999999998887653 235678999999999999999999999
Q ss_pred CCCEEE
Q psy3511 82 VKNIVR 87 (91)
Q Consensus 82 ~Gd~V~ 87 (91)
+||+|+
T Consensus 77 ~Gd~V~ 82 (337)
T cd05283 77 VGDRVG 82 (337)
T ss_pred CCCEEE
Confidence 999997
No 93
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.61 E-value=7.8e-15 Score=95.67 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=65.9
Q ss_pred CeEEEEcc-c-CCC--CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCC
Q psy3511 1 MLAVQCKR-W-GEP--RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQG 76 (91)
Q Consensus 1 m~a~~~~~-~-~~~--~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~ 76 (91)
||+|.+.+ + +++ +.+++++.+.|+ +++|||+||+++++||+.|+..... ....|.++|+|++|+|++ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~-~~~~evlVkv~a~~in~~~~~~~~~----~~~~p~v~G~e~~G~V~~---~ 74 (329)
T cd08294 3 AKTWVLKKHFDGKPKESDFELVEEELPP-LKDGEVLCEALFLSVDPYMRPYSKR----LNEGDTMIGTQVAKVIES---K 74 (329)
T ss_pred ceEEEEecCCCCCCCccceEEEecCCCC-CCCCcEEEEEEEEecCHHHhccccc----CCCCCcEecceEEEEEec---C
Confidence 89999988 4 444 779999999999 9999999999999999987642211 124578999999999985 4
Q ss_pred CCCCCCCCEEEee
Q psy3511 77 VKHFKVKNIVRSS 89 (91)
Q Consensus 77 ~~~~~~Gd~V~~~ 89 (91)
++.|++||+|++.
T Consensus 75 ~~~~~~Gd~V~~~ 87 (329)
T cd08294 75 NSKFPVGTIVVAS 87 (329)
T ss_pred CCCCCCCCEEEee
Confidence 4679999999874
No 94
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.61 E-value=1.8e-14 Score=92.52 Aligned_cols=88 Identities=47% Similarity=0.635 Sum_probs=75.0
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
||++++..++..+.+.+.+.+.|. +++++++|++.++++|+.|+....+.... ....|..+|+|++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~ 79 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPE-PGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT 79 (309)
T ss_pred CceEEEcccCCccceeecccCCCC-CCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCC
Confidence 899999887776667788888877 89999999999999999999888775421 124477899999999999999999
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.|++||+|++.
T Consensus 80 ~~~~G~~V~~~ 90 (309)
T cd05289 80 GFKVGDEVFGM 90 (309)
T ss_pred CCCCCCEEEEc
Confidence 99999999875
No 95
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.61 E-value=7.7e-15 Score=96.54 Aligned_cols=77 Identities=27% Similarity=0.266 Sum_probs=61.0
Q ss_pred CCceEEEEecC----CCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccce--EEEEEEeCCCCCCCCCCCE
Q psy3511 12 PRVLELTTVDK----PGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEV--SGIVEEVGQGVKHFKVKNI 85 (91)
Q Consensus 12 ~~~~~~~~~~~----p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~--~G~V~~vG~~~~~~~~Gd~ 85 (91)
++.|++++.+. |+ |++|||||||++++||+.|++.+.|.+......|.++|+++ .|.+..+|++++.|++||+
T Consensus 18 ~~~~~~~~~~~~~~~p~-p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~ 96 (338)
T cd08295 18 ESDLELRTTKLTLKVPP-GGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDL 96 (338)
T ss_pred ccceEEEEecCCcCCCC-CCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCE
Confidence 46799998877 77 99999999999999999999988875432124567788754 3455557788889999999
Q ss_pred EEee
Q psy3511 86 VRSS 89 (91)
Q Consensus 86 V~~~ 89 (91)
|+++
T Consensus 97 V~~~ 100 (338)
T cd08295 97 VWGF 100 (338)
T ss_pred EEec
Confidence 9865
No 96
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.61 E-value=1.3e-14 Score=96.57 Aligned_cols=83 Identities=33% Similarity=0.475 Sum_probs=72.1
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
|++++.+.+++ +++++.+.|. +.+++++|++.++++|+.|+....+.+. ...|.++|+|++|+|+++|++++.++
T Consensus 2 ~a~~~~~~~~~--~~~~~~~~p~-~~~~~vlv~v~~~~i~~~d~~~~~g~~~--~~~~~i~g~e~~G~V~~vG~~v~~~~ 76 (365)
T cd05279 2 KAAVLWEKGKP--LSIEEIEVAP-PKAGEVRIKVVATGVCHTDLHVIDGKLP--TPLPVILGHEGAGIVESIGPGVTTLK 76 (365)
T ss_pred ceeEEecCCCC--cEEEEeecCC-CCCCeEEEEEEEeeecchhHHHhcCCCC--CCCCcccccceeEEEEEeCCCcccCC
Confidence 67777765554 8889999999 9999999999999999999998887653 24567899999999999999999999
Q ss_pred CCCEEEee
Q psy3511 82 VKNIVRSS 89 (91)
Q Consensus 82 ~Gd~V~~~ 89 (91)
+||+|++.
T Consensus 77 ~Gd~Vv~~ 84 (365)
T cd05279 77 PGDKVIPL 84 (365)
T ss_pred CCCEEEEc
Confidence 99999875
No 97
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.61 E-value=1.2e-14 Score=95.89 Aligned_cols=89 Identities=27% Similarity=0.338 Sum_probs=70.2
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCC-C
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVK-H 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~-~ 79 (91)
+|++++..++++..++..+.+.|.++.+++|+|++.++++|+.|+....+........|.++|+|++|+|+++|++++ .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (352)
T cd08247 1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE 80 (352)
T ss_pred CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence 578999988888556555666654248999999999999999999877543211112367899999999999999998 8
Q ss_pred CCCCCEEEee
Q psy3511 80 FKVKNIVRSS 89 (91)
Q Consensus 80 ~~~Gd~V~~~ 89 (91)
|++||+|++.
T Consensus 81 ~~~Gd~V~~~ 90 (352)
T cd08247 81 WKVGDEVCGI 90 (352)
T ss_pred CCCCCEEEEe
Confidence 9999999875
No 98
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.59 E-value=2.8e-14 Score=93.93 Aligned_cols=86 Identities=35% Similarity=0.383 Sum_probs=71.6
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC-C-CCCCCCcccccceEEEEEEeCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY-P-NLPDLPAILGTEVSGIVEEVGQGVK 78 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~-~-~~~~~p~~~g~e~~G~V~~vG~~~~ 78 (91)
||++.+..++. .+.+.+.+.|. +.++|++||+.++++|+.|+..+.+.. . .....|..+|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~ 77 (341)
T cd05281 1 MKAIVKTKAGP--GAELVEVPVPK-PGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVT 77 (341)
T ss_pred CcceEEecCCC--ceEEEeCCCCC-CCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCC
Confidence 89999997664 48889999999 999999999999999999988765432 1 1123456799999999999999999
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.|++||+|++.
T Consensus 78 ~~~~Gd~V~~~ 88 (341)
T cd05281 78 RVKVGDYVSAE 88 (341)
T ss_pred CCCCCCEEEEC
Confidence 99999999873
No 99
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.59 E-value=5.1e-14 Score=90.93 Aligned_cols=88 Identities=41% Similarity=0.577 Sum_probs=75.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++.+...+.+..+.+.+.+.+. +++++++|++.++++|+.|+....+.+.....+|..+|+|++|+|+.+|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~ 79 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPV-PKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRW 79 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCC-CCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCC
Confidence 899998877777778888777777 8999999999999999999988777654333457889999999999999999999
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 80 ~~Gd~V~~~ 88 (325)
T TIGR02824 80 KVGDRVCAL 88 (325)
T ss_pred CCCCEEEEc
Confidence 999999875
No 100
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.58 E-value=3.1e-14 Score=95.74 Aligned_cols=88 Identities=39% Similarity=0.542 Sum_probs=71.9
Q ss_pred CeEEEEcc--cCCC-CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC--------CCC-CCC-cccccceE
Q psy3511 1 MLAVQCKR--WGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP--------NLP-DLP-AILGTEVS 67 (91)
Q Consensus 1 m~a~~~~~--~~~~-~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--------~~~-~~p-~~~g~e~~ 67 (91)
||||.+.. ++++ +.+++.+.+.|. +++++++|++.++++|+.|.+...+... +.. ..+ .++|+|++
T Consensus 8 ~~a~~~~~~~~~~~~~~~~~~~~~~p~-l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~ 86 (398)
T TIGR01751 8 MYAFAIREERDGDPRQAIQLEVVPVPE-LGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDAS 86 (398)
T ss_pred hhheEEecccCCCcccceEEeecCCCC-CCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceE
Confidence 89999954 6665 569999999999 9999999999999999999877655321 000 123 37999999
Q ss_pred EEEEEeCCCCCCCCCCCEEEee
Q psy3511 68 GIVEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 68 G~V~~vG~~~~~~~~Gd~V~~~ 89 (91)
|+|+++|++++.|++||+|++.
T Consensus 87 G~V~~vG~~v~~~~~Gd~V~~~ 108 (398)
T TIGR01751 87 GVVWRVGPGVTRWKVGDEVVAS 108 (398)
T ss_pred EEEEEeCCCCCCCCCCCEEEEc
Confidence 9999999999999999999874
No 101
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.58 E-value=7.1e-14 Score=90.40 Aligned_cols=85 Identities=33% Similarity=0.477 Sum_probs=72.4
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~ 80 (91)
||++.+.+.+.+..+++.+.+.|. +.++|++||+.++++|+.|+....+.++. ...|.++|+|++|+|+++|. ..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~ 76 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPE-PKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTF 76 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCC-CCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCC
Confidence 899999877766678888888887 89999999999999999999988776532 34567899999999999995 579
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|++.
T Consensus 77 ~~Gd~V~~~ 85 (320)
T cd08243 77 TPGQRVATA 85 (320)
T ss_pred CCCCEEEEe
Confidence 999999875
No 102
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.58 E-value=4.3e-14 Score=91.79 Aligned_cols=84 Identities=42% Similarity=0.575 Sum_probs=71.0
Q ss_pred EcccCCCC--ceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCC
Q psy3511 6 CKRWGEPR--VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVK 83 (91)
Q Consensus 6 ~~~~~~~~--~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~G 83 (91)
+++++.+. .+++++.+.|. +.+++++||+.++++|+.|+....+.+.....+|.++|+|++|+|+++|++++.|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~G 81 (323)
T cd05282 3 YTQFGEPLPLVLELVSLPIPP-PGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVG 81 (323)
T ss_pred eCcCCCCccceEEeEeCCCCC-CCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence 34555554 68888888888 9999999999999999999988877654334567889999999999999999999999
Q ss_pred CEEEeeC
Q psy3511 84 NIVRSSK 90 (91)
Q Consensus 84 d~V~~~~ 90 (91)
|+|++..
T Consensus 82 d~V~~~~ 88 (323)
T cd05282 82 QRVLPLG 88 (323)
T ss_pred CEEEEeC
Confidence 9999863
No 103
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.57 E-value=9e-14 Score=90.46 Aligned_cols=87 Identities=36% Similarity=0.473 Sum_probs=73.8
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
|++.+.+.+.+..+.+.+.+.|. +.+++++|++.++++|+.|+....+.+...+..|..+|+|++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 79 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPE-PSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFK 79 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCC-CCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCC
Confidence 56777766666678888888887 89999999999999999999988776543335567899999999999999999999
Q ss_pred CCCEEEee
Q psy3511 82 VKNIVRSS 89 (91)
Q Consensus 82 ~Gd~V~~~ 89 (91)
+||+|+++
T Consensus 80 ~G~~V~~~ 87 (337)
T cd08275 80 VGDRVMGL 87 (337)
T ss_pred CCCEEEEe
Confidence 99999975
No 104
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.57 E-value=8.2e-14 Score=92.54 Aligned_cols=75 Identities=28% Similarity=0.360 Sum_probs=63.3
Q ss_pred CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC--CCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511 13 RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS 88 (91)
Q Consensus 13 ~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~ 88 (91)
+.+++++.+.|. +.++|++||+.++++|+.|+....+... .....|.++|+|++|+|+++|++++.|++||+|++
T Consensus 27 ~~l~~~~~~~p~-~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 103 (364)
T PLN02702 27 NTLKIQPFKLPP-LGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVAL 103 (364)
T ss_pred CceEEEeccCCC-CCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEE
Confidence 458888888888 8999999999999999999998876321 11135678999999999999999999999999986
No 105
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.57 E-value=4.6e-14 Score=94.58 Aligned_cols=88 Identities=38% Similarity=0.514 Sum_probs=70.5
Q ss_pred CeEEEEc--ccCCCC-ceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCC---------CCCCcccccceEE
Q psy3511 1 MLAVQCK--RWGEPR-VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL---------PDLPAILGTEVSG 68 (91)
Q Consensus 1 m~a~~~~--~~~~~~-~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~---------~~~p~~~g~e~~G 68 (91)
||++++. +++.+. .+++++.+.|. ++++||+|++.++++|++|+....+..... ...+.++|+|++|
T Consensus 13 ~~a~~~~~~~~g~~~~~~~~~~~~~p~-l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G 91 (393)
T cd08246 13 MYAFAIRPERYGDPAQAIQLEDVPVPE-LGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASG 91 (393)
T ss_pred hhheeeecccCCCcccceEEeecCCCC-CCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEE
Confidence 7888775 344443 58899999999 999999999999999999998776642100 0122478999999
Q ss_pred EEEEeCCCCCCCCCCCEEEee
Q psy3511 69 IVEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 69 ~V~~vG~~~~~~~~Gd~V~~~ 89 (91)
+|+++|++++.|++||+|++.
T Consensus 92 ~V~~vG~~v~~~~~Gd~V~~~ 112 (393)
T cd08246 92 IVWAVGEGVKNWKVGDEVVVH 112 (393)
T ss_pred EEEEeCCCCCcCCCCCEEEEe
Confidence 999999999999999999875
No 106
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.56 E-value=8.2e-14 Score=91.06 Aligned_cols=82 Identities=32% Similarity=0.383 Sum_probs=71.7
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
|++++.++++ .+++.+.+.|. +.+++++|++.++++|+.|+....+.+.. ..+|..+|+|++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~ 76 (330)
T cd08245 1 KAAVVHAAGG--PLEPEEVPVPE-PGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRK 76 (330)
T ss_pred CeEEEecCCC--CceEEeccCCC-CCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccc
Confidence 6788887654 48999999998 89999999999999999999988876532 34577899999999999999999999
Q ss_pred CCCEEE
Q psy3511 82 VKNIVR 87 (91)
Q Consensus 82 ~Gd~V~ 87 (91)
+||+|+
T Consensus 77 ~Gd~V~ 82 (330)
T cd08245 77 VGDRVG 82 (330)
T ss_pred cCCEEE
Confidence 999997
No 107
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.54 E-value=2.4e-13 Score=87.61 Aligned_cols=87 Identities=43% Similarity=0.613 Sum_probs=72.7
Q ss_pred CeEEEEcccCCCCceEEEEecCCCCCC-CCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~ 79 (91)
|+++++.+.+.+..+.+.+.+ +. +. +++++|++.++++|+.|+....+.+......+..+|+|++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~ 78 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PE-PGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTG 78 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CC-CCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCC
Confidence 899999877766678887777 66 55 5999999999999999998877765332344668999999999999999999
Q ss_pred CCCCCEEEee
Q psy3511 80 FKVKNIVRSS 89 (91)
Q Consensus 80 ~~~Gd~V~~~ 89 (91)
|++||+|+++
T Consensus 79 ~~~G~~V~~~ 88 (323)
T cd08241 79 FKVGDRVVAL 88 (323)
T ss_pred CCCCCEEEEe
Confidence 9999999985
No 108
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.54 E-value=8.1e-14 Score=91.70 Aligned_cols=73 Identities=34% Similarity=0.384 Sum_probs=62.4
Q ss_pred eEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCC--CCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511 15 LELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP--NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS 88 (91)
Q Consensus 15 ~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~ 88 (91)
+++++.+.|. +.++|++|++.++++|+.|+.++.+... .....|.++|+|++|+|+++|++++.|++||+|++
T Consensus 11 ~~l~~~~~p~-~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 85 (340)
T TIGR00692 11 AELTEVPVPE-PGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSV 85 (340)
T ss_pred cEEEECCCCC-CCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEE
Confidence 8888999999 8999999999999999999987655421 11234668999999999999999999999999986
No 109
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.53 E-value=2.8e-13 Score=87.09 Aligned_cols=85 Identities=46% Similarity=0.661 Sum_probs=72.5
Q ss_pred eEEEEcccCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 2 LAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 2 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
||+.....+.+..+.+.+.+.+. +.+++++|++.++++|+.|+....+.++. .+|.++|+|++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~ 77 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPE-PGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFK 77 (320)
T ss_pred CeEEEecCCCccceEEeecCCCC-CCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCC
Confidence 56777766767778888888777 89999999999999999999988776532 3467899999999999999999999
Q ss_pred CCCEEEee
Q psy3511 82 VKNIVRSS 89 (91)
Q Consensus 82 ~Gd~V~~~ 89 (91)
+||+|+++
T Consensus 78 ~G~~V~~~ 85 (320)
T cd05286 78 VGDRVAYA 85 (320)
T ss_pred CCCEEEEe
Confidence 99999875
No 110
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.52 E-value=3.9e-13 Score=89.22 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=65.5
Q ss_pred eEEEEccc--C--CCCceEEEEe---cCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCccccc--ceEEEEEE
Q psy3511 2 LAVQCKRW--G--EPRVLELTTV---DKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGT--EVSGIVEE 72 (91)
Q Consensus 2 ~a~~~~~~--~--~~~~~~~~~~---~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~--e~~G~V~~ 72 (91)
|.|.+.+. + .+++|++.+. +.|.++++||||||+.++++|+.|+..+.+... ....|.++|+ +++|+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~-~~~~p~~~G~~~~~~G~v~~ 88 (348)
T PLN03154 10 KQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHD-SYLPPFVPGQRIEGFGVSKV 88 (348)
T ss_pred eEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCC-CCCCCcCCCCeeEeeEEEEE
Confidence 56666443 2 2367888874 555326899999999999999998875543222 1235788997 88999999
Q ss_pred eCCCCCCCCCCCEEEee
Q psy3511 73 VGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 73 vG~~~~~~~~Gd~V~~~ 89 (91)
+|+++++|++||+|++.
T Consensus 89 vg~~v~~~~~Gd~V~~~ 105 (348)
T PLN03154 89 VDSDDPNFKPGDLISGI 105 (348)
T ss_pred EecCCCCCCCCCEEEec
Confidence 99999999999999865
No 111
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.52 E-value=1.7e-13 Score=89.94 Aligned_cols=77 Identities=31% Similarity=0.349 Sum_probs=64.6
Q ss_pred CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHh-CCCC-CCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRS-GQYP-NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS 88 (91)
Q Consensus 11 ~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~-g~~~-~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~ 88 (91)
+.+.+.+++.+.|. ++++||+||+.++++|+.|+.... +.+. ....+|.++|+|++|+|+++|+++++|++||+|++
T Consensus 5 ~~~~~~~~~~~~p~-l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~ 83 (339)
T cd08232 5 AAGDLRVEERPAPE-PGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAV 83 (339)
T ss_pred cCCceEEEEcCCCC-CCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEE
Confidence 45679999999999 999999999999999999987763 3221 11235678999999999999999999999999986
No 112
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.51 E-value=4.7e-13 Score=89.67 Aligned_cols=74 Identities=32% Similarity=0.569 Sum_probs=63.6
Q ss_pred ceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCC------CCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEE
Q psy3511 14 VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY------PNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVR 87 (91)
Q Consensus 14 ~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~------~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~ 87 (91)
.+++++.+.|+ +++++++|++.++++|+.|+....+.. +....+|.++|+|++|+|+++|++++.|++||+|+
T Consensus 38 ~~~~~~~~~p~-~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 116 (384)
T cd08265 38 ELRVEDVPVPN-LKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVT 116 (384)
T ss_pred CEEEEECCCCC-CCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEE
Confidence 48889999999 999999999999999999998876321 11234678999999999999999999999999998
Q ss_pred e
Q psy3511 88 S 88 (91)
Q Consensus 88 ~ 88 (91)
+
T Consensus 117 ~ 117 (384)
T cd08265 117 A 117 (384)
T ss_pred E
Confidence 5
No 113
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.50 E-value=3.1e-13 Score=87.43 Aligned_cols=78 Identities=26% Similarity=0.270 Sum_probs=65.8
Q ss_pred CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHH-hCCCCC-CCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511 11 EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIR-SGQYPN-LPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS 88 (91)
Q Consensus 11 ~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~-~g~~~~-~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~ 88 (91)
+++.+++.+.+.|+ +.++|++|++.++++|+.|+... .+.... .+..|..+|+|++|+|+++|++++.|++||+|++
T Consensus 3 ~~~~~~~~~~~~~~-l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 81 (312)
T cd08269 3 GPGRFEVEEHPRPT-PGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG 81 (312)
T ss_pred CCCeeEEEECCCCC-CCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence 34568999999999 99999999999999999998877 554321 1234678999999999999999999999999997
Q ss_pred e
Q psy3511 89 S 89 (91)
Q Consensus 89 ~ 89 (91)
+
T Consensus 82 ~ 82 (312)
T cd08269 82 L 82 (312)
T ss_pred e
Confidence 5
No 114
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.49 E-value=3.8e-13 Score=88.08 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=62.0
Q ss_pred eEEEEcc----cCCCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCC
Q psy3511 2 LAVQCKR----WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGV 77 (91)
Q Consensus 2 ~a~~~~~----~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~ 77 (91)
|.|++.. +..++.+++.+.+.|. +++|||+|||+++++|+.++ .|.+.. ...|.++|.|++|+|++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~p~-~~~~evlv~v~a~~~n~~~~---~g~~~~-~~~~~i~G~~~~g~v~~~~~-- 74 (325)
T TIGR02825 2 KTWTLKKHFVGYPTDSDFELKTVELPP-LNNGEVLLEALFLSVDPYMR---VAAKRL-KEGDTMMGQQVARVVESKNV-- 74 (325)
T ss_pred cEEEEecCCCCCCCCCceEEEeccCCC-CCCCcEEEEEEEEecCHHHh---cccCcC-CCCCcEecceEEEEEEeCCC--
Confidence 4455533 3456789999999999 99999999999999999654 343322 23467899999999999764
Q ss_pred CCCCCCCEEEee
Q psy3511 78 KHFKVKNIVRSS 89 (91)
Q Consensus 78 ~~~~~Gd~V~~~ 89 (91)
.|++||+|++.
T Consensus 75 -~~~~GdrV~~~ 85 (325)
T TIGR02825 75 -ALPKGTIVLAS 85 (325)
T ss_pred -CCCCCCEEEEe
Confidence 59999999875
No 115
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.46 E-value=6.6e-13 Score=85.85 Aligned_cols=83 Identities=40% Similarity=0.512 Sum_probs=68.1
Q ss_pred EcccCCCCce--EEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCCCCCCCC
Q psy3511 6 CKRWGEPRVL--ELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 6 ~~~~~~~~~~--~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
++.+++++++ ++.+.+.|. +++++|+|++.++++|+.|+....+.++. ....+..+|+|++|.|.++|+++..|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~ 81 (319)
T cd08267 3 YTRYGSPEVLLLLEVEVPIPT-PKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFK 81 (319)
T ss_pred eCCCCChhhhhhccccCCCCC-CCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCC
Confidence 3445565554 777888888 89999999999999999999988776522 123456899999999999999999999
Q ss_pred CCCEEEee
Q psy3511 82 VKNIVRSS 89 (91)
Q Consensus 82 ~Gd~V~~~ 89 (91)
+||+|++.
T Consensus 82 ~Gd~V~~~ 89 (319)
T cd08267 82 VGDEVFGR 89 (319)
T ss_pred CCCEEEEe
Confidence 99999875
No 116
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.46 E-value=9.6e-13 Score=86.71 Aligned_cols=75 Identities=33% Similarity=0.356 Sum_probs=62.6
Q ss_pred CceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCC-CC-CCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511 13 RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQ-YP-NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRS 88 (91)
Q Consensus 13 ~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~-~~-~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~ 88 (91)
+.+.+++.+.|. +.++|++|++.++++|+.|+....+. .. .....|.++|+|++|+|+++|++++.|++||+|++
T Consensus 8 ~~~~~~~~~~~~-l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 84 (343)
T cd05285 8 GDLRLEERPIPE-PGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAI 84 (343)
T ss_pred CceeEEECCCCC-CCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEE
Confidence 468889999998 99999999999999999998876432 11 11134668999999999999999999999999985
No 117
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.44 E-value=2.7e-12 Score=83.70 Aligned_cols=85 Identities=25% Similarity=0.212 Sum_probs=66.9
Q ss_pred eEEEEcccC----CCCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCC--CCCCCcccccceEEEEEEeCC
Q psy3511 2 LAVQCKRWG----EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPN--LPDLPAILGTEVSGIVEEVGQ 75 (91)
Q Consensus 2 ~a~~~~~~~----~~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~V~~vG~ 75 (91)
|+|.+.... .++.+++++.+.|. +.+++++||+.++++|+.|+....+.... ....+..+|+|++|+|+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~ 81 (329)
T cd05288 3 RQVVLAKRPEGPPPPDDFELVEVPLPE-LKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS 81 (329)
T ss_pred cEEEEeccCCCCCCccceeEEeccCCC-CCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence 677886654 45789999999998 99999999999999999877655443211 112346789999999999996
Q ss_pred CCCCCCCCCEEEee
Q psy3511 76 GVKHFKVKNIVRSS 89 (91)
Q Consensus 76 ~~~~~~~Gd~V~~~ 89 (91)
+ .|++||+|++.
T Consensus 82 ~--~~~~Gd~V~~~ 93 (329)
T cd05288 82 P--DFKVGDLVSGF 93 (329)
T ss_pred C--CCCCCCEEecc
Confidence 4 79999999874
No 118
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.38 E-value=6.8e-12 Score=80.44 Aligned_cols=67 Identities=30% Similarity=0.366 Sum_probs=58.9
Q ss_pred CCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511 22 KPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 22 ~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~ 89 (91)
.|. +.+++++|++.++++|+.|+....+.++....+|.++|+|++|+|+++|+++.+|++||+|++.
T Consensus 2 ~p~-~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~ 68 (303)
T cd08251 2 VAP-PGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAG 68 (303)
T ss_pred CCC-CCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEe
Confidence 466 8899999999999999999998887664434567889999999999999999999999999875
No 119
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.28 E-value=2.4e-11 Score=76.82 Aligned_cols=61 Identities=49% Similarity=0.685 Sum_probs=53.1
Q ss_pred eEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511 30 EVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSSK 90 (91)
Q Consensus 30 ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~ 90 (91)
||+|++.++++|+.|+....+.++.....|.++|+|++|+|+++|++++.|++||+|++..
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~ 61 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLP 61 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcC
Confidence 6899999999999999998886542335578899999999999999999999999999753
No 120
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.16 E-value=2.8e-10 Score=74.24 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=59.9
Q ss_pred CCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCC--CCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511 12 PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--DLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 12 ~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~--~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~ 89 (91)
.+.|++++.+.|. +++||+|+|+.|.|++|..+.++....++.+ .+..++-...+|+|++ |+...|++||.|.++
T Consensus 24 ~d~F~lee~~vp~-p~~GqvLl~~~ylS~DPymRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~--S~~~~f~~GD~V~~~ 100 (340)
T COG2130 24 PDDFRLEEVDVPE-PGEGQVLLRTLYLSLDPYMRGRMSDAPSYAPPVELGEVMVGGTVAKVVA--SNHPGFQPGDIVVGV 100 (340)
T ss_pred CCCceeEeccCCC-CCcCceEEEEEEeccCHHHeecccCCcccCCCcCCCceeECCeeEEEEe--cCCCCCCCCCEEEec
Confidence 3679999999999 9999999999999999977766655544332 3334555667777887 888999999999876
Q ss_pred C
Q psy3511 90 K 90 (91)
Q Consensus 90 ~ 90 (91)
.
T Consensus 101 ~ 101 (340)
T COG2130 101 S 101 (340)
T ss_pred c
Confidence 3
No 121
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.13 E-value=4.1e-10 Score=71.39 Aligned_cols=58 Identities=43% Similarity=0.533 Sum_probs=51.5
Q ss_pred CeEEEEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511 29 DEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 29 ~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~ 89 (91)
+|++||+.++++|+.|+....+.+ ...|.++|+|++|+|+++|++++.|++||+|+++
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~---~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~ 58 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLL---PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGL 58 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCC---CCCCCccceeeeEEEEeecCCccCCCCCCEEEEE
Confidence 589999999999999999887754 2346789999999999999999999999999875
No 122
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=98.85 E-value=1.6e-08 Score=64.11 Aligned_cols=53 Identities=40% Similarity=0.538 Sum_probs=47.1
Q ss_pred EEEeEEecChhHHHHHhCCCCCCCCCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511 33 VKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 33 v~v~~~~l~~~d~~~~~g~~~~~~~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~ 89 (91)
||+.++++|+.|+....+.++ .+.++|+|++|+|+++|++++.|++||+|++.
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~ 54 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGL 54 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEE
Confidence 789999999999998877543 24689999999999999999999999999875
No 123
>KOG1198|consensus
Probab=98.78 E-value=9.6e-08 Score=63.93 Aligned_cols=86 Identities=35% Similarity=0.453 Sum_probs=59.7
Q ss_pred EEEEcccCC-CCceEEEEecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCC---CCCcc---cccceEEEEEEeC-
Q psy3511 3 AVQCKRWGE-PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP---DLPAI---LGTEVSGIVEEVG- 74 (91)
Q Consensus 3 a~~~~~~~~-~~~~~~~~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~---~~p~~---~g~e~~G~V~~vG- 74 (91)
.+.+....+ .......+.++|. +.++++++++.++++|+.|++++.+.+.... .+|.+ .|.+.+|.+...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~iP~-~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~ 85 (347)
T KOG1198|consen 7 RVSLVSPPGGGEVLFSEEVPIPE-PEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGD 85 (347)
T ss_pred eEEEeccCCCcceEEeecccCCC-CCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEecccc
Confidence 344444433 3445556888999 9999999999999999999999999886555 67744 4445555556666
Q ss_pred CCCCCCCCCCEEEee
Q psy3511 75 QGVKHFKVKNIVRSS 89 (91)
Q Consensus 75 ~~~~~~~~Gd~V~~~ 89 (91)
..+..+..||++...
T Consensus 86 ~~~~~~~~g~~~~~~ 100 (347)
T KOG1198|consen 86 DVVGGWVHGDAVVAF 100 (347)
T ss_pred ccccceEeeeEEeec
Confidence 344456677666543
No 124
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=98.35 E-value=5.1e-07 Score=58.35 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=26.6
Q ss_pred ccccceEEEEEEeCCCCC------CCCCCCEEEee
Q psy3511 61 ILGTEVSGIVEEVGQGVK------HFKVKNIVRSS 89 (91)
Q Consensus 61 ~~g~e~~G~V~~vG~~~~------~~~~Gd~V~~~ 89 (91)
++|||++|+|+++|++++ +|++||||...
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~ 35 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWS 35 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEc
Confidence 479999999999999999 89999999764
No 125
>KOG1196|consensus
Probab=98.10 E-value=4.6e-05 Score=50.29 Aligned_cols=75 Identities=23% Similarity=0.166 Sum_probs=51.2
Q ss_pred CceEEE--EecCCCCCCCCeEEEEEeEEecChhHHHHHhCCCCCCCCCCc----ccccceEEEEEEeCCCCCCCCCCCEE
Q psy3511 13 RVLELT--TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA----ILGTEVSGIVEEVGQGVKHFKVKNIV 86 (91)
Q Consensus 13 ~~~~~~--~~~~p~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~p~----~~g~e~~G~V~~vG~~~~~~~~Gd~V 86 (91)
++|.++ +.+.+.++++++++||..|.|.+|..+.++..-.+..-..|. +.-...+|.|++ ++.++|++||.|
T Consensus 20 ~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v 97 (343)
T KOG1196|consen 20 SDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVID--SGHPNYKKGDLV 97 (343)
T ss_pred ccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEe--cCCCCCCcCceE
Confidence 445444 444343379999999999999999887766543322111222 233478999999 677889999999
Q ss_pred Eee
Q psy3511 87 RSS 89 (91)
Q Consensus 87 ~~~ 89 (91)
++.
T Consensus 98 ~g~ 100 (343)
T KOG1196|consen 98 WGI 100 (343)
T ss_pred EEe
Confidence 875
No 126
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=98.07 E-value=8.3e-06 Score=52.21 Aligned_cols=33 Identities=39% Similarity=0.410 Sum_probs=30.8
Q ss_pred CCCcccccceEEEEEEeCCCCCCCCCCCEEEee
Q psy3511 57 DLPAILGTEVSGIVEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 57 ~~p~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~ 89 (91)
++|.++|+|++|+|+++|++++.|++||+|+++
T Consensus 19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 51 (277)
T cd08255 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF 51 (277)
T ss_pred cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec
Confidence 578999999999999999999999999999875
No 127
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=95.05 E-value=0.036 Score=22.77 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=13.5
Q ss_pred CeEEEEcccCCCCceEEEEecCCC
Q psy3511 1 MLAVQCKRWGEPRVLELTTVDKPG 24 (91)
Q Consensus 1 m~a~~~~~~~~~~~~~~~~~~~p~ 24 (91)
|||+.+. ++.++++++.+.|.
T Consensus 1 MkAv~y~---G~~~v~ve~VpdP~ 21 (23)
T PF13823_consen 1 MKAVVYH---GPKDVRVEEVPDPK 21 (23)
T ss_dssp -EEEEEE---ETTEEEEEEE----
T ss_pred CcceEEe---CCCceEEEECCCcc
Confidence 8999988 56678999998886
No 128
>KOG1202|consensus
Probab=94.72 E-value=0.09 Score=41.35 Aligned_cols=70 Identities=21% Similarity=0.169 Sum_probs=50.2
Q ss_pred CCCCceEEEEecCC--CCCCCCeEEEEEeEEecChhHHHHHhCCCCCCC------CCCcccccceEEEEEEeCCCCCCCC
Q psy3511 10 GEPRVLELTTVDKP--GPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP------DLPAILGTEVSGIVEEVGQGVKHFK 81 (91)
Q Consensus 10 ~~~~~~~~~~~~~p--~~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~------~~p~~~g~e~~G~V~~vG~~~~~~~ 81 (91)
|....+++.+.+.. .+..++.=+..|-|+.||++|+++..|..+... .....+|.|++|+- +
T Consensus 1424 GDlsSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~ 1493 (2376)
T KOG1202|consen 1424 GDLSSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------A 1493 (2376)
T ss_pred ccccceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------C
Confidence 34456777777654 215678889999999999999999998764321 22357899999873 3
Q ss_pred CCCEEEee
Q psy3511 82 VKNIVRSS 89 (91)
Q Consensus 82 ~Gd~V~~~ 89 (91)
-|.||+++
T Consensus 1494 ~GrRvM~m 1501 (2376)
T KOG1202|consen 1494 SGRRVMGM 1501 (2376)
T ss_pred CCcEEEEe
Confidence 47788765
No 129
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=93.87 E-value=0.098 Score=28.87 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=19.3
Q ss_pred eEEEEEEeCCCC---------CCCCCCCEEEe
Q psy3511 66 VSGIVEEVGQGV---------KHFKVKNIVRS 88 (91)
Q Consensus 66 ~~G~V~~vG~~~---------~~~~~Gd~V~~ 88 (91)
..|+|+++|++. ..+++||+|+.
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~ 66 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLF 66 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEE
Confidence 689999999973 35899999975
No 130
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=93.17 E-value=0.16 Score=28.55 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=18.9
Q ss_pred eEEEEEEeCCCCC----CCCCCCEEEe
Q psy3511 66 VSGIVEEVGQGVK----HFKVKNIVRS 88 (91)
Q Consensus 66 ~~G~V~~vG~~~~----~~~~Gd~V~~ 88 (91)
..|+|+++|++.. .+++||+|+.
T Consensus 45 ~~g~VvAVG~G~~~~~~~Vk~GD~Vl~ 71 (100)
T PTZ00414 45 NEGTVVAVAAATKDWTPTVKVGDTVLL 71 (100)
T ss_pred ceeEEEEECCCCccccceecCCCEEEE
Confidence 4699999999853 4899999975
No 131
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=92.62 E-value=0.16 Score=28.18 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=19.3
Q ss_pred eEEEEEEeCCCCC---------CCCCCCEEEee
Q psy3511 66 VSGIVEEVGQGVK---------HFKVKNIVRSS 89 (91)
Q Consensus 66 ~~G~V~~vG~~~~---------~~~~Gd~V~~~ 89 (91)
..|+|+++|++.. .+++||+|+..
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~ 68 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG 68 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence 5799999999642 48999999753
No 132
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=91.21 E-value=0.38 Score=26.51 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=18.9
Q ss_pred eEEEEEEeCCCCC----CCCCCCEEEee
Q psy3511 66 VSGIVEEVGQGVK----HFKVKNIVRSS 89 (91)
Q Consensus 66 ~~G~V~~vG~~~~----~~~~Gd~V~~~ 89 (91)
..|+|+++|++.. .+++||+|+..
T Consensus 36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~~ 63 (91)
T PRK14533 36 MKAEVVAVGKLDDEEDFDIKVGDKVIFS 63 (91)
T ss_pred ceEEEEEECCCCccccccccCCCEEEEc
Confidence 5799999997542 48999999753
No 133
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=0.42 Score=26.56 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=17.3
Q ss_pred eEEEEEEeCCCCC---------CCCCCCEEEe
Q psy3511 66 VSGIVEEVGQGVK---------HFKVKNIVRS 88 (91)
Q Consensus 66 ~~G~V~~vG~~~~---------~~~~Gd~V~~ 88 (91)
--|+|+++|++-. .+++||+|+.
T Consensus 36 ~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf 67 (96)
T COG0234 36 QEGEVVAVGPGRRDENGELVPLDVKVGDRVLF 67 (96)
T ss_pred cceEEEEEccceecCCCCEeccccccCCEEEE
Confidence 3589999997422 3899999974
No 134
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=89.84 E-value=0.4 Score=26.34 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=18.0
Q ss_pred cceEEEEEEeCC--------CC-CCCCCCCEEEee
Q psy3511 64 TEVSGIVEEVGQ--------GV-KHFKVKNIVRSS 89 (91)
Q Consensus 64 ~e~~G~V~~vG~--------~~-~~~~~Gd~V~~~ 89 (91)
-...|+|+++|+ .+ ..+++||+|+..
T Consensus 33 ~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~ 67 (93)
T PF00166_consen 33 KPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFP 67 (93)
T ss_dssp SEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEE
T ss_pred ccceeEEEEcCCccccCCCcEeeeeeeeccEEecc
Confidence 346899999999 22 358999999754
No 135
>KOG1641|consensus
Probab=83.65 E-value=2.1 Score=24.09 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=19.1
Q ss_pred ccceEEEEEEeCCCCC---------CCCCCCEEEe
Q psy3511 63 GTEVSGIVEEVGQGVK---------HFKVKNIVRS 88 (91)
Q Consensus 63 g~e~~G~V~~vG~~~~---------~~~~Gd~V~~ 88 (91)
+-...|+|+++|++.. ..++||+|..
T Consensus 41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLl 75 (104)
T KOG1641|consen 41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLL 75 (104)
T ss_pred cccceEEEEEEcCccccCCCCCcCccccCCCEEEe
Confidence 4446789999888643 4789999964
No 136
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=77.12 E-value=1.9 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=26.2
Q ss_pred cccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSK 90 (91)
Q Consensus 60 ~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~ 90 (91)
.+.|-..+|+|.--|......++||+|+.+.
T Consensus 58 vI~g~~gSg~I~lNGAAAr~~~~GD~vII~s 88 (111)
T cd06919 58 VIPGERGSGVICLNGAAARLGQPGDRVIIMA 88 (111)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEE
Confidence 3678888999999888888899999998763
No 137
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=73.58 E-value=2.6 Score=24.62 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=26.2
Q ss_pred cccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSK 90 (91)
Q Consensus 60 ~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~ 90 (91)
.+.|-..+|+|---|......++||+|+.+.
T Consensus 59 vI~G~~GSg~I~lNGAAArl~~~GD~VII~s 89 (126)
T TIGR00223 59 AIAGKRGSRIICVNGAAARCVSVGDIVIIAS 89 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEE
Confidence 3678888999999888888899999998753
No 138
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=73.16 E-value=2.6 Score=24.61 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.0
Q ss_pred cccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSK 90 (91)
Q Consensus 60 ~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~ 90 (91)
.++|-..+|+|.--|......++||+|+.+.
T Consensus 59 vI~g~~GSg~I~lNGAAAr~~~~GD~vII~a 89 (126)
T PRK05449 59 VIAGERGSGVICLNGAAARLVQVGDLVIIAA 89 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEE
Confidence 3678888999998888888899999998753
No 139
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=67.81 E-value=2.2 Score=24.57 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=22.4
Q ss_pred ccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511 61 ILGTEVSGIVEEVGQGVKHFKVKNIVRSSK 90 (91)
Q Consensus 61 ~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~ 90 (91)
+.|-..+|+|.--|......++||+|+.+.
T Consensus 60 I~g~~GSg~I~lNGaAArl~~~GD~vII~s 89 (116)
T PF02261_consen 60 IPGERGSGVICLNGAAARLVQVGDRVIIMS 89 (116)
T ss_dssp EEESTTTT-EEEEGGGGGCS-TT-EEEEEE
T ss_pred EEccCCCcEEEECCHHHhccCCCCEEEEEE
Confidence 567778889988888888899999998653
No 140
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=65.04 E-value=9.5 Score=25.82 Aligned_cols=28 Identities=11% Similarity=-0.124 Sum_probs=20.1
Q ss_pred cccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511 60 AILGTEVSGIVEEVGQGVKHFKVKNIVRSSK 90 (91)
Q Consensus 60 ~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~ 90 (91)
.+|-..+ ++|++ |.+.++.+|.|++++.
T Consensus 32 ~vPvWGf-A~Vve--S~~~~i~vGerlyGy~ 59 (314)
T PF11017_consen 32 IVPVWGF-ATVVE--SRHPGIAVGERLYGYF 59 (314)
T ss_pred ccccceE-EEEEe--eCCCCccCccEEEeec
Confidence 3444433 46666 7888899999999874
No 141
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=57.06 E-value=7.1 Score=22.77 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=23.9
Q ss_pred ccccceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511 61 ILGTEVSGIVEEVGQGVKHFKVKNIVRSSK 90 (91)
Q Consensus 61 ~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~ 90 (91)
+.|-..+|+|---|....-.++||+|+.+.
T Consensus 59 I~g~rGSg~I~lNGAAArl~~~GD~VII~s 88 (126)
T COG0853 59 IAGERGSGVICLNGAAARLVQVGDLVIIMS 88 (126)
T ss_pred EEccCCCcEEEechHHHhhCCCCCEEEEEE
Confidence 567777888887777777789999998764
No 142
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=55.12 E-value=14 Score=20.22 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=12.9
Q ss_pred cceEEEEEEeCCCCCCCCCCCEEEeeC
Q psy3511 64 TEVSGIVEEVGQGVKHFKVKNIVRSSK 90 (91)
Q Consensus 64 ~e~~G~V~~vG~~~~~~~~Gd~V~~~~ 90 (91)
+|=-|.|.-.+. ...+++||+|...+
T Consensus 52 seEHg~l~~~~~-~~~~~vGd~v~iiP 77 (94)
T PF14031_consen 52 SEEHGILRLPDG-ADRLKVGDKVEIIP 77 (94)
T ss_dssp -SS-EEEE-STT-GCGT-TT-EEEEEE
T ss_pred ecceeEEECCCC-CCCCCCCCEEEEEC
Confidence 344455544333 34599999998765
No 143
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=45.68 E-value=19 Score=19.97 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=10.3
Q ss_pred CCCCCCCEEEeeC
Q psy3511 78 KHFKVKNIVRSSK 90 (91)
Q Consensus 78 ~~~~~Gd~V~~~~ 90 (91)
..|++||+|+...
T Consensus 75 ~~Lk~GD~V~ll~ 87 (100)
T PF10844_consen 75 DGLKVGDKVLLLR 87 (100)
T ss_pred cCCcCCCEEEEEE
Confidence 3699999998753
No 144
>PF10077 DUF2314: Uncharacterized protein conserved in bacteria (DUF2314); InterPro: IPR018756 This domain of unkown function is found in various bacterial hypothetical proteins, as well as putative ankyrin repeat proteins.
Probab=43.45 E-value=49 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=22.9
Q ss_pred cccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511 62 LGTEVSGIVEEVGQGVKHFKVKNIVRS 88 (91)
Q Consensus 62 ~g~e~~G~V~~vG~~~~~~~~Gd~V~~ 88 (91)
-|..+.|++..-...+++++.||+|..
T Consensus 62 ~g~~~~G~L~N~P~~i~~v~~Gd~v~~ 88 (133)
T PF10077_consen 62 DGDTFSGVLDNEPYYITNVKEGDRVSF 88 (133)
T ss_pred cCCEEEEEEecCCcccCCCCCCCEEEE
Confidence 467789999988888889999999864
No 145
>KOG3438|consensus
Probab=41.18 E-value=56 Score=18.50 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=25.8
Q ss_pred ceEEEEecCCCCCCCCeEEEEEeEE-ecChhHHH
Q psy3511 14 VLELTTVDKPGPCLDDEVLVKVMAA-GINPVETY 46 (91)
Q Consensus 14 ~~~~~~~~~p~~~~~~ev~v~v~~~-~l~~~d~~ 46 (91)
..+|.-+.+|. |.++.+.++|+.. ++...|..
T Consensus 42 eVefcGYtIPH-Pse~k~niRIQt~~~~~A~evl 74 (105)
T KOG3438|consen 42 EVEFCGYTIPH-PSEDKINIRIQTRDGDPAVEVL 74 (105)
T ss_pred ceEEEeccCCC-CchhhheEEEEecCCCcchHHH
Confidence 46777888899 9999999999998 77766554
No 146
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=37.98 E-value=33 Score=13.59 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=7.4
Q ss_pred CCCCCEEEee
Q psy3511 80 FKVKNIVRSS 89 (91)
Q Consensus 80 ~~~Gd~V~~~ 89 (91)
|++||.|...
T Consensus 2 ~~~G~~V~I~ 11 (28)
T smart00739 2 FEVGDTVRVI 11 (28)
T ss_pred CCCCCEEEEe
Confidence 6788888754
No 147
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=37.86 E-value=22 Score=19.17 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=8.8
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
++++||+|+..
T Consensus 37 ~L~~Gd~VvT~ 47 (84)
T TIGR00739 37 SLKKGDKVLTI 47 (84)
T ss_pred hCCCCCEEEEC
Confidence 58999999754
No 148
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=37.64 E-value=45 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=9.3
Q ss_pred CCCCCCCEEEee
Q psy3511 78 KHFKVKNIVRSS 89 (91)
Q Consensus 78 ~~~~~Gd~V~~~ 89 (91)
+++|+||.|-+.
T Consensus 73 ~nvKVGD~VKaT 84 (213)
T PRK06763 73 SNVKVGDEVKAT 84 (213)
T ss_pred CCcccCcEEEEc
Confidence 457999999764
No 149
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=36.29 E-value=22 Score=24.47 Aligned_cols=15 Identities=20% Similarity=0.045 Sum_probs=11.9
Q ss_pred CCCCCCCCCEEEeeC
Q psy3511 76 GVKHFKVKNIVRSSK 90 (91)
Q Consensus 76 ~~~~~~~Gd~V~~~~ 90 (91)
+++++++||+|.++.
T Consensus 312 sVt~Lk~GD~VL~~~ 326 (344)
T PRK02290 312 SVVDLKPGDEVLGYL 326 (344)
T ss_pred eeeecCCCCEEEEEe
Confidence 356799999998763
No 150
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=35.29 E-value=24 Score=24.38 Aligned_cols=14 Identities=21% Similarity=0.048 Sum_probs=11.4
Q ss_pred CCCCCCCCEEEeeC
Q psy3511 77 VKHFKVKNIVRSSK 90 (91)
Q Consensus 77 ~~~~~~Gd~V~~~~ 90 (91)
++.+++||+|.++.
T Consensus 323 Vt~Lk~GD~vL~~~ 336 (354)
T PF01959_consen 323 VTELKPGDEVLVYL 336 (354)
T ss_pred eeecCCCCEEEEEe
Confidence 45799999998763
No 151
>KOG3209|consensus
Probab=35.21 E-value=21 Score=27.19 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=15.5
Q ss_pred EEEEEEeCCCC---CCCCCCCEEEeeC
Q psy3511 67 SGIVEEVGQGV---KHFKVKNIVRSSK 90 (91)
Q Consensus 67 ~G~V~~vG~~~---~~~~~Gd~V~~~~ 90 (91)
+|+|++ |+-. ..+++||||++.+
T Consensus 782 iGrIie-GSPAdRCgkLkVGDrilAVN 807 (984)
T KOG3209|consen 782 IGRIIE-GSPADRCGKLKVGDRILAVN 807 (984)
T ss_pred cccccc-CChhHhhccccccceEEEec
Confidence 666665 3322 3699999998764
No 152
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=33.68 E-value=53 Score=18.98 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=9.6
Q ss_pred CCCCCCCEEEee
Q psy3511 78 KHFKVKNIVRSS 89 (91)
Q Consensus 78 ~~~~~Gd~V~~~ 89 (91)
..+++||.|++.
T Consensus 54 ~~L~~GD~VLA~ 65 (124)
T PF15057_consen 54 HSLQVGDKVLAP 65 (124)
T ss_pred CcCCCCCEEEEe
Confidence 458999999875
No 153
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=31.72 E-value=32 Score=18.52 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=11.3
Q ss_pred cccccceEEEEEEe--C----CC---CCCCCCCCEEEe
Q psy3511 60 AILGTEVSGIVEEV--G----QG---VKHFKVKNIVRS 88 (91)
Q Consensus 60 ~~~g~e~~G~V~~v--G----~~---~~~~~~Gd~V~~ 88 (91)
..++..+.|.+-.- - +. ...|++||-|.+
T Consensus 40 ~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA 77 (82)
T PF10447_consen 40 RPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRA 77 (82)
T ss_dssp S----SS-S-EEEEGGGT-SS----GGGT--SSSEEEE
T ss_pred cccccccEEEEEeeeecccccchhhHHhccCCCCEEEE
Confidence 34556666766541 1 11 125999999875
No 154
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=31.39 E-value=39 Score=16.46 Aligned_cols=11 Identities=27% Similarity=0.163 Sum_probs=6.6
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
++++||.|+..
T Consensus 46 ~L~~G~~V~~~ 56 (64)
T PF03459_consen 46 GLKPGDEVYAS 56 (64)
T ss_dssp T-STT-EEEEE
T ss_pred CCCCCCEEEEE
Confidence 47788888765
No 155
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=31.11 E-value=44 Score=17.23 Aligned_cols=13 Identities=23% Similarity=0.169 Sum_probs=8.1
Q ss_pred CCCCCCCEEEeeC
Q psy3511 78 KHFKVKNIVRSSK 90 (91)
Q Consensus 78 ~~~~~Gd~V~~~~ 90 (91)
...++||+|+.+.
T Consensus 36 ~~v~~Gd~VLVHa 48 (68)
T PF01455_consen 36 PDVKVGDYVLVHA 48 (68)
T ss_dssp TSB-TT-EEEEET
T ss_pred CCCCCCCEEEEec
Confidence 4578999998763
No 156
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=30.84 E-value=70 Score=16.68 Aligned_cols=8 Identities=25% Similarity=0.052 Sum_probs=4.2
Q ss_pred CCCCCEEE
Q psy3511 80 FKVKNIVR 87 (91)
Q Consensus 80 ~~~Gd~V~ 87 (91)
-.+||+|.
T Consensus 57 a~aGd~v~ 64 (83)
T cd03698 57 AVAGENVR 64 (83)
T ss_pred ECCCCEEE
Confidence 34566554
No 157
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=30.06 E-value=61 Score=16.95 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=5.9
Q ss_pred CCCCCEEEeeC
Q psy3511 80 FKVKNIVRSSK 90 (91)
Q Consensus 80 ~~~Gd~V~~~~ 90 (91)
+++||.|..++
T Consensus 27 v~~Gd~v~~~P 37 (81)
T cd03695 27 IRVGDEVVVLP 37 (81)
T ss_pred EECCCEEEEcC
Confidence 45566665443
No 158
>KOG4680|consensus
Probab=29.70 E-value=1.2e+02 Score=18.28 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=13.2
Q ss_pred CCCCeEEEEEeEEecC
Q psy3511 26 CLDDEVLVKVMAAGIN 41 (91)
Q Consensus 26 ~~~~ev~v~v~~~~l~ 41 (91)
+..|...|+|+|.++.
T Consensus 68 Is~Gk~VIeV~y~gi~ 83 (153)
T KOG4680|consen 68 ISEGKYVIEVSYGGIR 83 (153)
T ss_pred eeCCeEEEEEEEeeEE
Confidence 6677788999999884
No 159
>PF13403 Hint_2: Hint domain
Probab=28.93 E-value=37 Score=20.15 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=10.1
Q ss_pred CCCCCCCCEEEee
Q psy3511 77 VKHFKVKNIVRSS 89 (91)
Q Consensus 77 ~~~~~~Gd~V~~~ 89 (91)
+.++++||+|...
T Consensus 18 Ve~L~~GD~V~T~ 30 (147)
T PF13403_consen 18 VEDLRPGDRVLTR 30 (147)
T ss_pred eeccCCCCEEEec
Confidence 4569999999754
No 160
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=28.65 E-value=36 Score=19.40 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=9.3
Q ss_pred CCCCCCCEEEee
Q psy3511 78 KHFKVKNIVRSS 89 (91)
Q Consensus 78 ~~~~~Gd~V~~~ 89 (91)
+++++||+|+..
T Consensus 37 ~~Lk~GD~VvT~ 48 (109)
T PRK05886 37 ESLQPGDRVHTT 48 (109)
T ss_pred HhcCCCCEEEEC
Confidence 358999999754
No 161
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=28.62 E-value=98 Score=16.22 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=7.8
Q ss_pred CCCCCCCCEEEe
Q psy3511 77 VKHFKVKNIVRS 88 (91)
Q Consensus 77 ~~~~~~Gd~V~~ 88 (91)
...+++||+|..
T Consensus 42 ~~~~~~Gd~V~v 53 (78)
T cd04486 42 GADVAVGDLVRV 53 (78)
T ss_pred CCCCCCCCEEEE
Confidence 445677777754
No 162
>smart00350 MCM minichromosome maintenance proteins.
Probab=27.56 E-value=76 Score=22.84 Aligned_cols=20 Identities=25% Similarity=0.081 Sum_probs=14.6
Q ss_pred EEEeCCCCCCCCCCCEEEee
Q psy3511 70 VEEVGQGVKHFKVKNIVRSS 89 (91)
Q Consensus 70 V~~vG~~~~~~~~Gd~V~~~ 89 (91)
|+-.++-+..+++||+|...
T Consensus 108 v~l~~dLvd~~~PGD~V~i~ 127 (509)
T smart00350 108 VILDGDLVDKAKPGDRVEVT 127 (509)
T ss_pred EEEcccccCcccCCCEEEEE
Confidence 44445667789999999764
No 163
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=27.50 E-value=59 Score=17.24 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=9.0
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
..++||+|+.+
T Consensus 35 ~~~vGD~VLVH 45 (76)
T TIGR00074 35 EVKVGDYVLVH 45 (76)
T ss_pred CCCCCCEEEEe
Confidence 47899999875
No 164
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=27.18 E-value=86 Score=15.87 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=7.9
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.+++||.+...
T Consensus 24 gL~~GD~I~~I 34 (79)
T cd00986 24 KLKAGDHIIAV 34 (79)
T ss_pred CCCCCCEEEEE
Confidence 47888877654
No 165
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=27.11 E-value=40 Score=19.03 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=9.0
Q ss_pred CCCCCCCEEEee
Q psy3511 78 KHFKVKNIVRSS 89 (91)
Q Consensus 78 ~~~~~Gd~V~~~ 89 (91)
+++++||+|+..
T Consensus 51 ~~Lk~Gd~VvT~ 62 (106)
T PRK05585 51 SSLAKGDEVVTN 62 (106)
T ss_pred HhcCCCCEEEEC
Confidence 358999999754
No 166
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=27.08 E-value=33 Score=21.90 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=7.3
Q ss_pred CCCCCCCEEEeeC
Q psy3511 78 KHFKVKNIVRSSK 90 (91)
Q Consensus 78 ~~~~~Gd~V~~~~ 90 (91)
+++++||+|.+..
T Consensus 30 ~~L~iGD~Vla~d 42 (217)
T PF01079_consen 30 SDLKIGDRVLAVD 42 (217)
T ss_dssp GG--TT-EEEEE-
T ss_pred HHCCCCCEEEEec
Confidence 4699999998753
No 167
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=26.78 E-value=41 Score=19.33 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=8.8
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
++++||+|+-.
T Consensus 36 sLk~GD~VvT~ 46 (113)
T PRK06531 36 AIQKGDEVVTI 46 (113)
T ss_pred hcCCCCEEEEC
Confidence 58999999754
No 168
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=26.64 E-value=49 Score=19.33 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=10.7
Q ss_pred CCCCCCCEEEeeC
Q psy3511 78 KHFKVKNIVRSSK 90 (91)
Q Consensus 78 ~~~~~Gd~V~~~~ 90 (91)
.+|++||.|+..+
T Consensus 41 ~~f~~GDlvLflp 53 (129)
T PF10377_consen 41 RNFQVGDLVLFLP 53 (129)
T ss_pred ecCCCCCEEEEEe
Confidence 5799999998765
No 169
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=25.70 E-value=94 Score=16.15 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=4.1
Q ss_pred CCCCCEEE
Q psy3511 80 FKVKNIVR 87 (91)
Q Consensus 80 ~~~Gd~V~ 87 (91)
-..||+|.
T Consensus 56 a~aGd~v~ 63 (82)
T cd04089 56 ARPGENVR 63 (82)
T ss_pred ECCCCEEE
Confidence 34555554
No 170
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=25.52 E-value=1.1e+02 Score=16.28 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=17.2
Q ss_pred ceEEEEEEeCCCCC---CCCCCCEEEeeC
Q psy3511 65 EVSGIVEEVGQGVK---HFKVKNIVRSSK 90 (91)
Q Consensus 65 e~~G~V~~vG~~~~---~~~~Gd~V~~~~ 90 (91)
.=+|.|.--|..+. .++.||+|..++
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVYP 75 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEEe
Confidence 34566665555443 478999998765
No 171
>PF02832 Flavi_glycop_C: Flavivirus glycoprotein, immunoglobulin-like domain; InterPro: IPR000336 Flaviruses are small, enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Yellow fever virus, West Nile virus, Tick-borne encephalitis virus, Japanese encephalitis virus, and Dengue virus 2 []. Flaviviruses consist of three structural proteins: the core nucleocapsid protein C (IPR001122 from INTERPRO), and the envelope glycoproteins M (IPR000069 from INTERPRO) and E. Glycoprotein E is a class II viral fusion protein that mediates both receptor binding and fusion. Class II viral fusion proteins are found in flaviviruses and alphaviruses, and are structurally distinct from class I fusion proteins from influenza-type viruses and retroviruses. Glycoprotein E is comprised of three domains: domain I (dimerisation domain) is an 8-stranded beta barrel, domain II (central domain) is an elongated domain composed of twelve beta strands and two alpha helices, and domain III (immunoglobulin-like domain) is an IgC-like module with ten beta strands. This entry represents the Ig-like domain III, which contains a putative receptor-binding loop [].; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2R29_A 1PJW_A 4FFY_A 3IRC_A 4ALA_C 3G7T_A 2I69_A 1ZTX_E 2P5P_A 1URZ_F ....
Probab=25.32 E-value=1.1e+02 Score=17.07 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=19.0
Q ss_pred ceEEEEecCCCCCCCCeEEEEEeEEec
Q psy3511 14 VLELTTVDKPGPCLDDEVLVKVMAAGI 40 (91)
Q Consensus 14 ~~~~~~~~~p~~~~~~ev~v~v~~~~l 40 (91)
.|.|...|... +.|-|++++.|.|-
T Consensus 8 ~F~~~K~P~dT--gHgTVvmev~y~G~ 32 (97)
T PF02832_consen 8 KFSFKKTPTDT--GHGTVVMEVKYTGS 32 (97)
T ss_dssp SEEEEEEEEE---TTSSEEEEEEEESS
T ss_pred ceEEEeCcccC--CCCeEEEEEEEccC
Confidence 47777766554 77899999999965
No 172
>cd07029 RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to ass
Probab=25.32 E-value=1.2e+02 Score=16.26 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=24.5
Q ss_pred eEEEEecCCCCCCCCeEEEEEeEEe-cChhHHH
Q psy3511 15 LELTTVDKPGPCLDDEVLVKVMAAG-INPVETY 46 (91)
Q Consensus 15 ~~~~~~~~p~~~~~~ev~v~v~~~~-l~~~d~~ 46 (91)
..+.-+..|. |..+.+.++++..+ .++.+..
T Consensus 36 V~fagY~vpH-Pl~~~~~lriqT~~~~~p~~al 67 (85)
T cd07029 36 VEFCGYSIPH-PSENKINLRIQTKGGEPAVDVL 67 (85)
T ss_pred ceEEeecccC-CCCCccEEEEEeCCCCCHHHHH
Confidence 5666777888 78889999999987 8887654
No 173
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=25.10 E-value=69 Score=15.72 Aligned_cols=11 Identities=18% Similarity=0.024 Sum_probs=8.5
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.+++||+|++.
T Consensus 48 ~l~~G~~v~~~ 58 (69)
T TIGR00638 48 GLKPGKEVYAV 58 (69)
T ss_pred CCCCCCEEEEE
Confidence 47899998765
No 174
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=24.97 E-value=49 Score=18.45 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=9.0
Q ss_pred CCCCCCCEEEee
Q psy3511 78 KHFKVKNIVRSS 89 (91)
Q Consensus 78 ~~~~~Gd~V~~~ 89 (91)
++++.||+|+..
T Consensus 42 ~sL~kGD~VvT~ 53 (97)
T COG1862 42 NSLKKGDEVVTI 53 (97)
T ss_pred HhccCCCEEEEc
Confidence 357899999754
No 175
>PF14444 S1-like: S1-like
Probab=24.61 E-value=56 Score=16.47 Aligned_cols=9 Identities=33% Similarity=0.213 Sum_probs=7.4
Q ss_pred CCCCEEEee
Q psy3511 81 KVKNIVRSS 89 (91)
Q Consensus 81 ~~Gd~V~~~ 89 (91)
++||+|.+-
T Consensus 35 ~vGdrV~v~ 43 (58)
T PF14444_consen 35 KVGDRVLVE 43 (58)
T ss_pred ccCCEEEEE
Confidence 799999764
No 176
>cd06927 RNAP_L L subunit of Archaeal RNA polymerase. The archaeal L subunit of RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.
Probab=24.60 E-value=1.3e+02 Score=16.14 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=24.2
Q ss_pred ceEEEEecCCCCCCCCeEEEEEeEEe-cChhHHH
Q psy3511 14 VLELTTVDKPGPCLDDEVLVKVMAAG-INPVETY 46 (91)
Q Consensus 14 ~~~~~~~~~p~~~~~~ev~v~v~~~~-l~~~d~~ 46 (91)
...|.-+..|. |-.+++.++++..+ .+|.+..
T Consensus 35 ~V~fAgY~vpH-Pl~~~~~lrIqT~~~~~p~~al 67 (83)
T cd06927 35 GVKVASYDIEH-PLLSNPVLKIKTDGGVDPLEAL 67 (83)
T ss_pred CeEEEEeecCC-CCCCccEEEEEeCCCCCHHHHH
Confidence 35666777787 77788999999887 7887654
No 177
>KOG3262|consensus
Probab=24.35 E-value=92 Score=19.74 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=10.9
Q ss_pred CCCCCCCCEEEeeC
Q psy3511 77 VKHFKVKNIVRSSK 90 (91)
Q Consensus 77 ~~~~~~Gd~V~~~~ 90 (91)
.+.|++||.++..+
T Consensus 116 assfk~g~k~fi~p 129 (215)
T KOG3262|consen 116 ASSFKPGDKLFIDP 129 (215)
T ss_pred eecccCCCeEEecc
Confidence 35799999998764
No 178
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=23.55 E-value=56 Score=18.97 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=7.0
Q ss_pred CCCCCCEEEeeC
Q psy3511 79 HFKVKNIVRSSK 90 (91)
Q Consensus 79 ~~~~Gd~V~~~~ 90 (91)
..++||+|+.+.
T Consensus 39 ~mk~GD~vifY~ 50 (143)
T PF01878_consen 39 RMKPGDKVIFYH 50 (143)
T ss_dssp C--TT-EEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 578999998764
No 179
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=22.25 E-value=63 Score=17.45 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=9.9
Q ss_pred CCCCCCCEEEeeC
Q psy3511 78 KHFKVKNIVRSSK 90 (91)
Q Consensus 78 ~~~~~Gd~V~~~~ 90 (91)
..++.||+|.+.+
T Consensus 46 ~~l~~Gd~V~v~G 58 (91)
T cd04482 46 RLLIPGDEVTVYG 58 (91)
T ss_pred CCCCCCCEEEEEE
Confidence 3578999998764
No 180
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=22.18 E-value=89 Score=18.24 Aligned_cols=11 Identities=9% Similarity=0.108 Sum_probs=8.8
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
.++.||+|+..
T Consensus 99 ~L~~GD~Vwl~ 109 (135)
T smart00110 99 QLRQGDQVWLE 109 (135)
T ss_pred EECCCCEEEEE
Confidence 48999999853
No 181
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=22.16 E-value=79 Score=18.71 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=11.0
Q ss_pred CCCCCCCCCCEEEee
Q psy3511 75 QGVKHFKVKNIVRSS 89 (91)
Q Consensus 75 ~~~~~~~~Gd~V~~~ 89 (91)
+.+..+++||+|...
T Consensus 81 prip~l~~GD~V~f~ 95 (131)
T PF11948_consen 81 PRIPWLQKGDQVEFY 95 (131)
T ss_pred ccCcCcCCCCEEEEE
Confidence 455568999998764
No 182
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=22.04 E-value=27 Score=18.65 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=0.4
Q ss_pred CCCCCCCEEEee
Q psy3511 78 KHFKVKNIVRSS 89 (91)
Q Consensus 78 ~~~~~Gd~V~~~ 89 (91)
+++++||+|+..
T Consensus 35 ~~Lk~Gd~VvT~ 46 (82)
T PF02699_consen 35 ASLKPGDEVVTI 46 (82)
T ss_dssp G-----------
T ss_pred HcCCCCCEEEEC
Confidence 358889988643
No 183
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=22.01 E-value=68 Score=20.66 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=7.8
Q ss_pred CCCCCCCCCEEEee
Q psy3511 76 GVKHFKVKNIVRSS 89 (91)
Q Consensus 76 ~~~~~~~Gd~V~~~ 89 (91)
....|++||+|...
T Consensus 131 ~~~~F~vGd~Vrv~ 144 (222)
T PF02211_consen 131 APPRFAVGDRVRVR 144 (222)
T ss_dssp SS-SS-TT-EEEE-
T ss_pred CCCCCCCCCEEEEC
Confidence 34579999999764
No 184
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=21.45 E-value=1.4e+02 Score=20.08 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=11.5
Q ss_pred CCCCCCCCEEEeeCC
Q psy3511 77 VKHFKVKNIVRSSKS 91 (91)
Q Consensus 77 ~~~~~~Gd~V~~~~~ 91 (91)
...+++||+|...++
T Consensus 314 ~~~~~vGd~v~~~p~ 328 (358)
T cd06819 314 AAPLKIGDRLELVPG 328 (358)
T ss_pred CCCCCCCCEEEEECC
Confidence 456999999987653
No 185
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=20.59 E-value=1.1e+02 Score=14.80 Aligned_cols=12 Identities=0% Similarity=0.230 Sum_probs=9.5
Q ss_pred CCCCCCEEEeeC
Q psy3511 79 HFKVKNIVRSSK 90 (91)
Q Consensus 79 ~~~~Gd~V~~~~ 90 (91)
.+++||+++...
T Consensus 30 gl~~GD~I~~In 41 (70)
T cd00136 30 GLQAGDVILAVN 41 (70)
T ss_pred CCCCCCEEEEEC
Confidence 599999988653
No 186
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=20.42 E-value=1.4e+02 Score=15.71 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=5.5
Q ss_pred CCCCCEEEee
Q psy3511 80 FKVKNIVRSS 89 (91)
Q Consensus 80 ~~~Gd~V~~~ 89 (91)
+++||.|...
T Consensus 27 v~~gd~v~~~ 36 (87)
T cd03697 27 IKVGDEVEIV 36 (87)
T ss_pred CccCCEEEEe
Confidence 4566666543
No 187
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.41 E-value=1.5e+02 Score=20.54 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=19.8
Q ss_pred CCcccccceEEEEEEeCC-CCCCCCCCCEEEeeC
Q psy3511 58 LPAILGTEVSGIVEEVGQ-GVKHFKVKNIVRSSK 90 (91)
Q Consensus 58 ~p~~~g~e~~G~V~~vG~-~~~~~~~Gd~V~~~~ 90 (91)
+|.+.+.-+.|++.+-.- ..+..++||.|+...
T Consensus 138 ~~~vi~tt~iG~~~~~~~v~~~~~~~GD~vI~tg 171 (339)
T COG0309 138 DPIVINTTGIGIIDKEILVSPSGARPGDAVIVTG 171 (339)
T ss_pred CCcEEEeeeEEeecCCcccccCCCCCCCEEEEcC
Confidence 345555666666665210 123589999998754
No 188
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=20.09 E-value=1.7e+02 Score=19.33 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=19.1
Q ss_pred cccceEEEEEEeCCCCCCCCCCCEEEe
Q psy3511 62 LGTEVSGIVEEVGQGVKHFKVKNIVRS 88 (91)
Q Consensus 62 ~g~e~~G~V~~vG~~~~~~~~Gd~V~~ 88 (91)
+|.+..=.+-++|+-..+|++||.|+.
T Consensus 82 LGvk~iI~tnavGsl~~~~~pGDlVv~ 108 (267)
T PRK08564 82 LGVEWVIAVSAVGSLREDYKPGDFVIP 108 (267)
T ss_pred CCCcEEEEeccccccCCCCCCCCEEee
Confidence 555555555566666678999999875
No 189
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.00 E-value=1.7e+02 Score=15.86 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=8.8
Q ss_pred CCCCCCEEEee
Q psy3511 79 HFKVKNIVRSS 89 (91)
Q Consensus 79 ~~~~Gd~V~~~ 89 (91)
..++||+|+..
T Consensus 38 ~v~~GdyVLVH 48 (82)
T COG0298 38 EVKVGDYVLVH 48 (82)
T ss_pred ccccCCEEEEE
Confidence 57899999764
Done!