RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3511
(91 letters)
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 106 bits (268), Expect = 1e-29
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 1 MLAVQCKRWGEPR-VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
+Q ++G P+ VL++ + D+EV V+++ INP + +G Y + LP
Sbjct: 5 GKLIQFHKFGNPKDVLQVEYKNIEPL-KDNEVFVRMLVRPINPSDLIPITGAYAHRIPLP 63
Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
I G E GIVE VG V +
Sbjct: 64 NIPGYEGVGIVENVGAFVSRELI 86
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 106 bits (267), Expect = 1e-29
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 1 MLAVQCKRWGEPRVLELTT-VDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
M AV+ +G P VL+L + + P P D +VL+KV A G+NPVETYIRSG Y P LP
Sbjct: 30 MRAVRVFEFGGPEVLKLRSDIAVPIP-KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 88
Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
G++V+G++E VG FK
Sbjct: 89 YTPGSDVAGVIEAVGDNASAFKK 111
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 105 bits (265), Expect = 3e-29
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 1 MLAVQCKRWGEPR-VLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
+ A+ G+P V+EL ++ +V VK++AA INP + + G Y LP+LP
Sbjct: 27 VRALVYGHHGDPAKVVELKNLELAAV-RGSDVRVKMLAAPINPSDINMIQGNYGLLPELP 85
Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
A+ G E V VG V K
Sbjct: 86 AVGGNEGVAQVVAVGSNVTGLKP 108
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 104 bits (261), Expect = 6e-29
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQY----PNLP 56
M A+Q ++G P+VL+L P +++L+KV AA +NP++ R+G
Sbjct: 7 MKAIQFDQFGPPKVLKLVDTPTPEY-RKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKN 65
Query: 57 DLPAILGTEVSGIVEEVGQGVKHFKV 82
+LP+ LG + SG V E+G V + +
Sbjct: 66 NLPSGLGYDFSGEVIELGSDVNNVNI 91
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex;
HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 102 bits (256), Expect = 5e-28
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
+Q G P VLE + P V+V+ A G+N ++TY RSG YP P LP+
Sbjct: 2 AKRIQFSTVGGPEVLEYVDFEPEAPG-PQAVVVRNKAIGLNFIDTYYRSGLYP-APFLPS 59
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
LG E +G+VE VG V FKV
Sbjct: 60 GLGAEGAGVVEAVGDEVTRFKV 81
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase,
PSI-II, alcohol dehydrogenase superf structural
genomics; 1.96A {Novosphingobium aromaticivorans}
Length = 343
Score = 102 bits (256), Expect = 5e-28
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP-DLP 59
M+A + P VL +P P +VLV++ A+G NP++ IR+G+ P+ LP
Sbjct: 8 MIAAVVEEANGPFVLRKLARPQPAP---GQVLVQIEASGTNPLDAKIRAGEAPHAQQPLP 64
Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
AILG +++G V VG V F+V
Sbjct: 65 AILGMDLAGTVVAVGPEVDSFRV 87
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L;
oxidoreductase; 2.10A {Homo sapiens}
Length = 349
Score = 101 bits (254), Expect = 1e-27
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M AV +G L L P P D E+ ++V A G+N ++ +R G N P P
Sbjct: 4 MRAVVLAGFGGLNKLRLFRKAMPEPQ-DGELKIRVKACGLNFIDLMVRQGNIDNPPKTPL 62
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
+ G E SGIVE +G VK +++
Sbjct: 63 VPGFECSGIVEALGDSVKGYEI 84
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 100 bits (251), Expect = 2e-27
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
++ + G P VL+ P ++E+ V+ A GIN ++TYIRSG YP P LP+
Sbjct: 2 ATRIEFHKHGGPEVLQAVEFTPADPA-ENEIQVENKAIGINFIDTYIRSGLYP-PPSLPS 59
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
LGTE +GIV +VG GVKH K
Sbjct: 60 GLGTEAAGIVSKVGSGVKHIKA 81
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 100 bits (252), Expect = 2e-27
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 1 MLAVQCKRWGEPRVLELT-TVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL---- 55
+A ++G+ VL T + P +EV+VKV AA +NP++ +RSG
Sbjct: 22 SMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMK 81
Query: 56 ----------PDLPAILGTEVSGIVEEVGQGVKHFKV 82
+ P LG +VSG+V E G VK+FK
Sbjct: 82 RDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKP 118
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 99.6 bits (249), Expect = 5e-27
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
+ G V++ P ++E+L+K G+N +E+Y R G YP + P
Sbjct: 9 QKVILIDEIGGYDVIKYEDYPVPSIS-EEELLIKNKYTGVNYIESYFRKGIYP--CEKPY 65
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
+LG E SG V G+GV +F+V
Sbjct: 66 VLGREASGTVVAKGKGVTNFEV 87
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 97.7 bits (244), Expect = 3e-26
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M V K +G P V+ + P + EVLV+ A G+N + R G YP D
Sbjct: 29 MRFVDLKSFGGPDVMVIGKRPLPVAG-EGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASP 87
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
ILG E+SG + VG GV + V
Sbjct: 88 ILGLELSGEIVGVGPGVSGYAV 109
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 96.9 bits (242), Expect = 3e-26
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 1 MLAVQCKRWGEP-RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLP 59
M Q + + L +VD P D++LV+ A GINPV+ N
Sbjct: 2 MEQHQVWAYQTKTHSVTLNSVDIPAL-AADDILVQNQAIGINPVDWKFIKANPINWS-NG 59
Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
+ G + +G++ +VG V +
Sbjct: 60 HVPGVDGAGVIVKVGAKVDSKML 82
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 94.6 bits (236), Expect = 4e-25
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLP--DL 58
++A + G P V P +V ++ A G+N ++TY R+G L +
Sbjct: 2 VMAAVIHKKGGPDNFVWEEVKVGSPG-PGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEP 60
Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
P ++G E + +VEEVG GV F V
Sbjct: 61 PIVVGFEAAAVVEEVGPGVTDFTV 84
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 93.8 bits (234), Expect = 8e-25
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M AV + G P VLE+ + P P EV V++ AA +N ++ ++R G LP
Sbjct: 1 MRAVVMRARGGPEVLEVADLPVPEPG-PKEVRVRLKAAALNHLDVWVRKGVASPKLPLPH 59
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
+LG + SG+V+ VG GV+ F
Sbjct: 60 VLGADGSGVVDAVGPGVEGFAP 81
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 93.4 bits (233), Expect = 1e-24
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A+Q + P L T V+ PG + V+V V AAG+ + + G+Y + P
Sbjct: 22 MKAIQAQSLSGPEGLVYTDVETPGA-GPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPF 80
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
+ G E +G+V +G K
Sbjct: 81 VPGIETAGVVRSAPEGS-GIKP 101
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 92.4 bits (230), Expect = 3e-24
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 1 MLAVQCKRWG---EPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
M AV + + L + KP P ++LV+V A +NPV+ +R P+
Sbjct: 23 MKAVGYNKPAPITDDASLLDIELPKPAP-AGHDILVEVKAVSVNPVDYKVRRSTPPDGT- 80
Query: 58 LPAILGTEVSGIVEEVGQGVKHFKV 82
++G + +GIV VG V F+
Sbjct: 81 DWKVIGYDAAGIVSAVGPDVTLFRP 105
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 91.9 bits (229), Expect = 4e-24
Identities = 23/95 (24%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 1 MLAVQCKRWGEP------------RVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIR 48
M A+ G LE + P P +VL+KV A INP +
Sbjct: 11 MKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPG-PSQVLIKVNLASINPSDVAFI 69
Query: 49 SGQYPNLPDLPAILGTEVSGIVEEVGQGVK-HFKV 82
GQY G E G + G V
Sbjct: 70 KGQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLV 104
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 92.1 bits (229), Expect = 5e-24
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 1 MLAVQCKRWGEPR-VLELTTVDKPGPCL-DDEVLVKVMAAGINPVETYIRSGQYPNLPDL 58
AV + GEP+ VL + + L +EV+VK + + +NP + G YP+ P
Sbjct: 4 AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63
Query: 59 ---------PAILGTEVSGIVEEVGQGVKHFKV 82
A G E V +VG V +
Sbjct: 64 TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEA 96
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 90.0 bits (224), Expect = 2e-23
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 1 MLAVQCKRW---GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
+ A+ ++ + + + +D P P E+LVK+ + +NPV+T R
Sbjct: 3 LKAIGFEQPFKLSDGNLFKTFNLDIPEPK-VHEILVKIQSISVNPVDTKQRLMDV---SK 58
Query: 58 LPAILGTEVSGIVEEVGQGVKHFKV 82
P +LG + G+VE VG V F
Sbjct: 59 APRVLGFDAIGVVESVGNEVTMFNQ 83
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 87.7 bits (218), Expect = 2e-22
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
MLAV + G P L + V KP P + EVL+KV A+ +N + R GQY P
Sbjct: 23 MLAVHFDKPGGPENLYVKEVAKPSPG-EGEVLLKVAASALNRADLMQRQGQYDPPPGASN 81
Query: 61 ILGTEVSGIVEEVGQGVK-HFKV 82
ILG E SG V E+G G + H+K+
Sbjct: 82 ILGLEASGHVAELGPGCQGHWKI 104
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 83.8 bits (208), Expect = 5e-21
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M + P L+L P + +++V+ +A +N + + P
Sbjct: 28 MQEWSTETVA-PHDLKLAERPVPEAG-EHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPF 85
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
+ +++SG+VE VG+ V F+
Sbjct: 86 VPASDMSGVVEAVGKSVTRFRP 107
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily),
rossmann fold, NAD binding, oxidoreductase; HET: NAP;
1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 80.9 bits (200), Expect = 6e-20
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
A+ E V D+V V+V A INP +T +R A
Sbjct: 12 QTALTVNDHDEVTVWNAAPCPMLPR---DQVYVRVEAVAINPSDTSMRGQ----FATPWA 64
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
LGT+ +G V VG V H +V
Sbjct: 65 FLGTDYAGTVVAVGSDVTHIQV 86
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 75.3 bits (186), Expect = 4e-18
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A KR G P LEL + +P + EV+++V A G+N + +R G Y P
Sbjct: 1 MKAWVLKRLGGP--LELVDLPEPEA-EEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPF 57
Query: 61 ILGTEVSGIVEEVGQGV 77
I G EV G+V G+
Sbjct: 58 IPGMEVVGVV--EGRRY 72
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 75.0 bits (185), Expect = 8e-18
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 1 MLAVQCKRWGE---PRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD 57
M + R V P P D ++LV+ G+N + +G+Y
Sbjct: 24 MQKLVVTRLSPNFREAVTLSRDCPVPLPG-DGDLLVRNRFVGVNASDINYSAGRYDPSVK 82
Query: 58 LPAILGTEVSGIVEEVGQGVK-HFKVKNIV 86
P +G E G V +G + V V
Sbjct: 83 PPFDIGFEGIGEVVALGLSASARYTVGQAV 112
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 71.8 bits (176), Expect = 1e-16
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 1 MLAVQCKRWGEPR-VLELTTVDKPGPCLDDEVLVKVMAAGIN----------------PV 43
M A R +PR + L V P E LV VMA+ +N +
Sbjct: 43 MFAGLETRDKDPRKSIHLDDVPVPEL-GPGEALVAVMASSVNYNSVHTSIFEPLSTFGFL 101
Query: 44 ETYIRSGQYPNLPDLP-AILGTEVSGIVEEVGQGVKHFKV 82
E Y R DLP ++G++++G+V G GV ++
Sbjct: 102 ERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQA 141
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 71.1 bits (174), Expect = 2e-16
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 29/101 (28%)
Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYP---------------- 53
L L ++D P P DEVL+++ A+ +NP + + G
Sbjct: 15 SGELELSLDSIDTPHPG-PDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVT 73
Query: 54 ------------NLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
D +G E +G+V E G +
Sbjct: 74 ARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQAL 114
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 70.0 bits (172), Expect = 5e-16
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL--PDL 58
+ A + + +P L + VD P +V+V++ AG+ + ++ G + L P L
Sbjct: 16 LKAARLHEYNKP--LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKL 73
Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
P LG E G +EEV +GV+ +
Sbjct: 74 PYTLGHENVGYIEEVAEGVEGLEK 97
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A*
1nto_A 1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 68.4 bits (168), Expect = 2e-15
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNL----- 55
M AV+ G+P L L + P P +VL+KV AAG+ + ++R G++ NL
Sbjct: 1 MRAVRLVEIGKP--LSLQEIGVPKP-KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVED 57
Query: 56 --PDLPAILGTEVSGIVEEVGQGVKHFKV 82
LP LG E++G +EEVG V +
Sbjct: 58 LGVKLPVTLGHEIAGKIEEVGDEVVGYSK 86
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 68.7 bits (168), Expect = 2e-15
Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 29/110 (26%)
Query: 1 MLAVQCKRW-----------GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRS 49
LA+ + + L L V P DEVLV VMA+ IN +
Sbjct: 25 YLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELA-PDEVLVAVMASSINYNTVWSAM 83
Query: 50 GQY-----------------PNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
+ +LG++ SG+V G GV+ +K
Sbjct: 84 FEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKP 133
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 68.3 bits (168), Expect = 2e-15
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
G L+ + +P DEVLVKV+A G+ + +R +YP LPA+LG E SGI
Sbjct: 16 GADFELQALKIRQPQG---DEVLVKVVATGMCHTDLIVRDQKYP--VPLPAVLGHEGSGI 70
Query: 70 VEEVGQGVKHFKV 82
+E +G V +V
Sbjct: 71 IEAIGPNVTELQV 83
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 68.4 bits (168), Expect = 2e-15
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD-LP 59
M AVQ G V+ PGP E+L+KV AAG+ + ++ LP
Sbjct: 1 MKAVQYTEIGSEPVVVDIPTPTPGP---GEILLKVTAAGLCHSDIFVMDMPAAQYAYGLP 57
Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
LG E G V E+G+GV F V
Sbjct: 58 LTLGHEGVGTVAELGEGVTGFGV 80
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 66.1 bits (162), Expect = 1e-14
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
G+P +E V P EV +K++A + + Y SG P P ILG +GI
Sbjct: 16 GKPLSIEEIEVAPPKA---HEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGI 71
Query: 70 VEEVGQGVKHFKV 82
VE VG+GV K
Sbjct: 72 VESVGEGVTKLKA 84
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 65.3 bits (160), Expect = 3e-14
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
G P +E V P EV ++V+A + P + + P +LG E +GI
Sbjct: 18 GSPLCIEEIEVSPPKA---CEVRIQVIATCVCPTDINATDPKKK--ALFPVVLGHECAGI 72
Query: 70 VEEVGQGVKHFKV 82
VE VG GV +FK
Sbjct: 73 VESVGPGVTNFKP 85
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A
{Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 64.9 bits (159), Expect = 3e-14
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
+P LE TV P EV +K++A+GI ++ + P P ILG E G+
Sbjct: 19 HKPLSLETITVAPPKA---HEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGV 73
Query: 70 VEEVGQGVKHFKV 82
VE +G GV K
Sbjct: 74 VESIGAGVTCVKP 86
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 64.5 bits (158), Expect = 4e-14
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
M +V ++ + P DEV VK+ ++G+ + + ++G +
Sbjct: 1 MKSV---VNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHY----Y 53
Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
P LG E SG ++ VG GV
Sbjct: 54 PITLGHEFSGYIDAVGSGVDDLHP 77
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G
JCSG, PSI, protein structure initiative, joint center
for S genomics; 2.00A {Thermotoga maritima} SCOP:
b.35.1.2 c.2.1.1
Length = 380
Score = 64.2 bits (157), Expect = 7e-14
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
A+ +++ +P L + +LV++++AG+ + ++ G+ P +P LP
Sbjct: 18 AHAMVLEKFNQP--LVYKEFEISDI-PRGSILVEILSAGVCGSDVHMFRGEDPRVP-LPI 73
Query: 61 ILGTEVSGIVEEVGQGVKHFKVKNI 85
ILG E +G V EV + + +
Sbjct: 74 ILGHEGAGRVVEVNGEKRDLNGELL 98
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 61.9 bits (151), Expect = 4e-13
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M AV R + + V P D++LVKV A GI + ++ G++P P
Sbjct: 24 MKAV---RLESVGNISVRNVGIP-EPGPDDLLVKVEACGICGTDRHLLHGEFP--STPPV 77
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
LG E GIV E G V+
Sbjct: 78 TLGHEFCGIVVEAGSAVRDIAP 99
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 61.5 bits (150), Expect = 5e-13
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPD-LP 59
A K++ EP L + V+ P P +EVL+++ AG+ + + G LP
Sbjct: 4 SKAALLKKFSEP--LSIEDVNIPEP-QGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60
Query: 60 AILGTEVSGIVEEVGQGVKHFKV 82
ILG E +G + EVG+ + K
Sbjct: 61 IILGHENAGTIVEVGE-LAKVKK 82
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal
coordination, NAD, zinc, inhibition, acetylation,
metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP:
b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A*
1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A*
1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A*
3bto_A* 4dwv_A* ...
Length = 374
Score = 58.8 bits (143), Expect = 4e-12
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
+P +E V P EV +K++A GI + ++ SG LP I G E +GI
Sbjct: 18 KKPFSIEEVEVAPPKA---HEVRIKMVATGICRSDDHVVSGTLV--TPLPVIAGHEAAGI 72
Query: 70 VEEVGQGVKHFKV 82
VE +G+GV +
Sbjct: 73 VESIGEGVTTVRP 85
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus
horikoshii OT3, structural genomics; HET: NAD; 2.05A
{Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 56.8 bits (138), Expect = 2e-11
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 1 MLAVQCKRWGEPRV-LELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPD 57
M+A+ +P EL VD P EVL+KV+A I + Y + +
Sbjct: 5 MVAI---MKTKPGYGAELVEVDVP-KPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIK 60
Query: 58 LPAILGTEVSGIVEEVGQGVKHFKV 82
P I+G EV+G V E+G GV+ +V
Sbjct: 61 PPQIMGHEVAGEVVEIGPGVEGIEV 85
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain
dehydrogenase/reductase, oxidoreductase; HET: NAD;
2.60A {Neurospora crassa}
Length = 363
Score = 56.5 bits (137), Expect = 3e-11
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 9 WGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEV 66
W L +V K + EV V V + GI + V + P + + +LG E
Sbjct: 21 WISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHES 80
Query: 67 SGIVEEVGQGVKHFKV 82
+G V V VK KV
Sbjct: 81 AGEVIAVHPSVKSIKV 96
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 56.5 bits (137), Expect = 3e-11
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 10 GEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGI 69
+P V+E VD P +E+ +K++A G+ + Y P +LG E +GI
Sbjct: 18 NKPLVIEEIEVDVPHA---NEIRIKIIATGVCHTDLYHLFEGKHKDG-FPVVLGHEGAGI 73
Query: 70 VEEVGQGVKHFKV 82
VE VG GV F+
Sbjct: 74 VESVGPGVTEFQP 86
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc,
tetramer; 2.35A {Geobacillus stearothermophilus} SCOP:
b.35.1.2 c.2.1.1 PDB: 3pii_A
Length = 339
Score = 56.0 bits (136), Expect = 4e-11
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A +++ EP L++ V+KP EVLV++ A G+ + + G +P P LP
Sbjct: 1 MKAAVVEQFKEP--LKIKEVEKPTI-SYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPL 57
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
I G E GIVEEVG GV H KV
Sbjct: 58 IPGHEGVGIVEEVGPGVTHLKV 79
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 56.1 bits (136), Expect = 5e-11
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
L+ + L L P +DEVL+++ GI + V Y +
Sbjct: 5 NLSA---VLYKQNDLRLEQRPIP-EPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKD 60
Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
P ++G E SG V +VG+ VKH K
Sbjct: 61 PMVIGHEASGTVVKVGKNVKHLKK 84
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 55.5 bits (134), Expect = 7e-11
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI------NPVETYIRSGQYPN 54
L + R + + V +P E+++KV A GI YP
Sbjct: 31 WLGSKVWR---YPEVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPG 87
Query: 55 LPDLPAILGTEVSGIVEEVGQGV------KHFKV 82
L P LG E SG+V E G K F++
Sbjct: 88 LTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEI 121
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 54.9 bits (133), Expect = 1e-10
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M A + +G P L + V P P +V VK+ A+G+ + + G +P P LP
Sbjct: 3 MKAAVVRAFGAP--LTIDEVPVPQP-GPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPF 59
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
I G E G V VG GV K
Sbjct: 60 IPGHEGVGYVSAVGSGVSRVKE 81
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 54.7 bits (132), Expect = 1e-10
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 21 DKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHF 80
P D EV + + AAG+N + I G YP A LG+E +G+V E G GV
Sbjct: 231 TATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG----VASLGSEGAGVVVETGPGVTGL 286
Query: 81 KV 82
Sbjct: 287 AP 288
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 53.7 bits (130), Expect = 3e-10
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
M A+ E L L P P E+LV+V AA I + +
Sbjct: 1 MRALAKLAPEEG--LTLVDRPVPEP-GPGEILVRVEAASICGTDLHIWKWDAWARGRIRP 57
Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
P + G E SG+VE VG GV+ +V
Sbjct: 58 PLVTGHEFSGVVEAVGPGVRRPQV 81
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD;
1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 52.6 bits (127), Expect = 7e-10
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
L++ P L L P P +EVL+++ + GI + V + +
Sbjct: 8 NLSL---VVHGPGDLRLENYPIPEP-GPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKK 63
Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
P +LG E SG VE+VG VKH K
Sbjct: 64 PMVLGHEASGTVEKVGSSVKHLKP 87
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 52.4 bits (126), Expect = 8e-10
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI-----------NPVETYIRS 49
M A+ K +++ VD+ ++ ++ + GI + T +
Sbjct: 1 MKAIIVKPPNAG--VQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPK- 57
Query: 50 GQYPNLPDLPAILGTEVSGIVEEVGQGVK 78
+LG E G+VEE G
Sbjct: 58 ------GKDFLVLGHEAIGVVEESYHGFS 80
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 49.6 bits (119), Expect = 8e-09
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDL 58
M A+ KR + +P P E LV+ + G+ E +
Sbjct: 1 MKAIAVKR--GEDRPVVIEKPRPEP-ESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGED 57
Query: 59 PAILGTEVSGIVEEVGQGVKHFKV 82
+LG E G+V + +
Sbjct: 58 HLVLGHEAVGVVVDP--NDTELEE 79
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 49.5 bits (119), Expect = 9e-09
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
V LE + P P +E+L+ V +G+ + + G +P LP
Sbjct: 6 QKGVIFYESHGK--LEYKDIPVPKP-KANELLINVKYSGVCHTDLHAWHGDWPLPVKLPL 62
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
+ G E +G+V +G+ VK +K+
Sbjct: 63 VGGHEGAGVVVGMGENVKGWKI 84
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 39.1 bits (92), Expect = 5e-05
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPA 60
M + +KP + +V+ +A + +
Sbjct: 1 MKGF---AMLSIGKVGWIEKEKP-APGPFDAIVRPLAVAPCTSDIHTVFEGAIGERH-NM 55
Query: 61 ILGTEVSGIVEEVGQGVKHFKV 82
ILG E G V EVG VK FK
Sbjct: 56 ILGHEAVGEVVEVGSEVKDFKP 77
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 39.1 bits (92), Expect = 5e-05
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 22 KPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
++V +++ G+ + + +RS P + G E+ G V VG V+
Sbjct: 41 TRREPGPNDVKIEIAYCGVCHSDLHQ-VRSEWAG--TVYPCVPGHEIVGRVVAVGDQVEK 97
Query: 80 FKV 82
+
Sbjct: 98 YAP 100
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 38.8 bits (91), Expect = 5e-05
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKP------GPCLDDEVLVKVMAAGINPVETYIRSGQYPN 54
V + +E+ +D P G ++ V++KV++ I + ++ G+
Sbjct: 3 NRGVV---YLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA 59
Query: 55 LPDLPAILGTEVSGIVEEVGQGVKHFKV 82
L +LG E++G V E G+ V++ ++
Sbjct: 60 QVGL--VLGHEITGEVIEKGRDVENLQI 85
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 38.3 bits (90), Expect = 9e-05
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 22 KPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
+VL+ ++ AGI + + + S P I G E++GI++EVG+GVK
Sbjct: 23 SRHAVGPRDVLIDILYAGICHSDIHS-AYSEWKE--GIYPMIPGHEIAGIIKEVGKGVKK 79
Query: 80 FKV 82
FK+
Sbjct: 80 FKI 82
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin
biosynthesis, metal-binding, NADP, oxidoreductase,
zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 38.0 bits (89), Expect = 1e-04
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 22 KPGPCLDDEVLVKVMAAGI--NPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKH 79
++V ++++ GI + ++ + P + G EV G V EVG V
Sbjct: 28 TLRETGPEDVNIRIICCGICHTDLHQ-TKNDLGM--SNYPMVPGHEVVGEVVEVGSDVSK 84
Query: 80 FKV 82
F V
Sbjct: 85 FTV 87
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 38.0 bits (89), Expect = 1e-04
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 32/98 (32%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKP-----GPCLDDEVLVKVMAA-----------GINPVE 44
+V + R L + TV P L+ V++KV++ G V
Sbjct: 3 NKSVV---YHGTRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVP 59
Query: 45 TYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
+LG E++G V E G V+ +
Sbjct: 60 K-------------GHVLGHEITGEVVEKGSDVELMDI 84
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol,
oxidoreductase, zinc-dependent, plant DE biosynthesis,
substrate inhibition; HET: NAP; 1.65A {Populus
tremuloides} PDB: 1yqx_A*
Length = 366
Score = 35.6 bits (83), Expect = 6e-04
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 22 KPGPCLDDEVLVKVMAAGI--NPVETYIRSG----QYPNLPDLPAILGTEVSGIVEEVGQ 75
+++V KV+ G+ + + + I++ YP +P G E+ G V EVG
Sbjct: 35 SRRATGEEDVRFKVLYCGVCHSDLHS-IKNDWGFSMYPLVP------GHEIVGEVTEVGS 87
Query: 76 GVKHFKV 82
VK V
Sbjct: 88 KVKKVNV 94
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 32.9 bits (75), Expect = 0.007
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 4/60 (6%)
Query: 23 PGPCLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
P + L V +N + + +G+ +I G ++ +
Sbjct: 1554 ALPASCQDRLCSVYYTSLNFRDVMLATGKLSP----DSIPGKWLTRDCMLGMEFSGRDAS 1609
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.058
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 30/92 (32%)
Query: 1 MLAVQCKRWGEPRVLELTTVDKPGPCLDDEVL---VKVMAAGIN-PVET--Y-IRSGQYP 53
M+A+ P + E L V+ + VE Y + + QY
Sbjct: 1809 MIAI------NP--------GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY- 1853
Query: 54 NLPDLPAILGTEVSGIVEEVGQGVKHFKVKNI 85
G + ++ V + K++ I
Sbjct: 1854 ------VAAGDLRA--LDTVTNVLNFIKLQKI 1877
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology,
NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A
{Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB:
1ps0_A* 1q1n_A
Length = 360
Score = 30.2 bits (69), Expect = 0.067
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 18/83 (21%)
Query: 7 KRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAGI--NPVETYIRSG----QYPNLPDLPA 60
+ W P+ + P P D ++ +K+ A G+ + + + P +
Sbjct: 16 EDWKNPKKTKYD----PKPFYDHDIDIKIEACGVCGSDIHC-AAGHWGNMKMPLVV---- 66
Query: 61 ILGTEVSGIVEEVGQGV-KHFKV 82
G E+ G V ++G KV
Sbjct: 67 --GHEIVGKVVKLGPKSNSGLKV 87
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase,
family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC;
1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Length = 1003
Score = 27.8 bits (61), Expect = 0.46
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 23 PGPCLDDEVLVKVMAAGINPVETYI 47
P P L +V K+ A G N V Y+
Sbjct: 53 PVPSLYLDVFHKIKALGFNTVSFYV 77
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein
translocase, cell membrane, cell outer fimbrium,
transmembrane, transport; 3.15A {Escherichia coli} PDB:
2vqi_A*
Length = 493
Score = 27.6 bits (61), Expect = 0.52
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 44 ETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQGVKHFKV 82
++ + +G + ++ DL + + + V E K F+V
Sbjct: 142 DSMVPAGPF-SIQDLDSSVRGRLDVEVIEQNGRKKTFQV 179
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase,
soybean lipoxygenase-B, fatty acid biosynthesis, lipid
synthesis; 2.4A {Glycine max}
Length = 853
Score = 26.8 bits (58), Expect = 1.1
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 26 CLDDEVLVKVMAAGINPVETYIRSGQYPNLPDLPAILGTEVSGIVEEVGQ 75
+ DE + AG+NP I + G I +E +
Sbjct: 353 WMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIITKEHLE 402
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, TIM barrel,
glyco_hydro_42; HET: MSE; 1.80A {Caulobacter
crescentus}
Length = 552
Score = 26.1 bits (57), Expect = 1.6
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 29 DEVLVKVMAAGINPVETYI 47
+V + G N V+ I
Sbjct: 76 AKVWPAIEKVGANTVQVPI 94
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 25.0 bits (54), Expect = 3.8
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 14/45 (31%)
Query: 12 PRVLELTTVDKPGPC--------LDDEVLVKVMAAGINPVETYIR 48
V +LT +D PG D +K + ++ YI+
Sbjct: 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTL------IKKYIQ 182
>3cz5_A Two-component response regulator, LUXR family; structural genomics,
protein structure initiative; 2.70A {Aurantimonas SP}
Length = 153
Score = 24.8 bits (55), Expect = 4.2
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 6/34 (17%)
Query: 6 CKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAG 39
+ G R+L T +K AG
Sbjct: 74 RQWDGAARILIFTMHQ------GSAFALKAFEAG 101
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 24.9 bits (55), Expect = 4.4
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 10 GEPRV--LELTTVDKPGPCLDDEVLVKVMAAGINPVETYIR 48
G P + V P + +V V+ + ++P Y+R
Sbjct: 22 GNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDP---YMR 59
>3f6c_A Positive transcription regulator EVGA; structural genomics,
PSI-2, protein structure initiative, PO transcription
regulator EVGA; 1.45A {Escherichia coli k-12}
Length = 134
Score = 24.7 bits (55), Expect = 4.4
Identities = 5/34 (14%), Positives = 10/34 (29%), Gaps = 6/34 (17%)
Query: 6 CKRWGEPRVLELTTVDKPGPCLDDEVLVKVMAAG 39
KR ++ ++ + D AG
Sbjct: 69 RKRQYSGIIIIVSAKN------DHFYGKHCADAG 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.404
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,414,541
Number of extensions: 76420
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 81
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)