Query psy3513
Match_columns 140
No_of_seqs 129 out of 560
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 18:35:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0748|consensus 99.9 1.1E-23 2.4E-28 176.5 4.6 65 73-138 5-69 (286)
2 PF04487 CITED: CITED; InterP 42.7 8.2 0.00018 32.4 0.0 43 24-94 154-197 (214)
3 PF02380 Papo_T_antigen: T-ant 27.4 30 0.00065 25.5 0.9 24 108-131 60-85 (92)
4 PF14619 SnAC: Snf2-ATP coupli 27.1 25 0.00053 24.2 0.3 17 76-92 17-33 (74)
5 PF04195 Transposase_28: Putat 25.3 66 0.0014 26.0 2.6 43 92-134 60-104 (181)
6 PF06127 DUF962: Protein of un 20.3 2.3E+02 0.0051 20.1 4.3 31 105-135 3-33 (95)
7 PF03694 Erg28: Erg28 like pro 17.1 1.4E+02 0.003 22.4 2.6 32 107-138 57-91 (111)
8 PHA02977 hypothetical protein; 14.8 46 0.00099 27.4 -0.5 11 92-102 164-174 (201)
9 PRK03968 DNA primase large sub 14.6 87 0.0019 28.7 1.2 24 77-100 240-264 (399)
10 cd04436 DEP_fRgd2 DEP (Disheve 14.3 3.3E+02 0.0071 19.8 3.9 57 8-73 2-59 (84)
No 1
>KOG0748|consensus
Probab=99.88 E-value=1.1e-23 Score=176.47 Aligned_cols=65 Identities=42% Similarity=0.751 Sum_probs=59.7
Q ss_pred hhcCcCeeeccCCCchhhcCCcccCCCCCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q psy3513 73 WQASWNVCHFQHLPQWLQDNDFLHTGHRPPLYTFKECFKSIFRVHTETGNIWTHLLDILNKPLQNM 138 (140)
Q Consensus 73 ~~~~~~Ll~~~eLP~wlrdN~yIltGYR~~~~S~~~C~kSlF~~HNETvNIWTHLig~v~f~~~~~ 138 (140)
..+++++++++++|+|+||||||++||| +..|++.|+||+|++||||+||||||+|+++|.....
T Consensus 5 ~~~~~~l~~~~~lP~~~~dn~yi~~gyR-~~~s~~~c~~S~f~~hNEt~NiwTHLlg~i~f~~~~~ 69 (286)
T KOG0748|consen 5 LLKRPRLLPWDELPEWLKDNEYILTGYR-PGSSFRACFKSIFQWHNETLNIWTHLLGFILFLFLLI 69 (286)
T ss_pred cccccccCChhhCCHHHhcCcceeCccC-CCCCHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999 5679999999999999999999999999999987653
No 2
>PF04487 CITED: CITED; InterPro: IPR007576 CITED, CBP/p300-interacting transactivator with ED-rich tail, is characterised by a conserved 32-amino acid sequence at the C terminus. CITED protein does not bind DNA directly and is thought to function as a transcriptional co-activator [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1R8U_A 1P4Q_A.
Probab=42.75 E-value=8.2 Score=32.40 Aligned_cols=43 Identities=42% Similarity=0.717 Sum_probs=16.3
Q ss_pred CCCCCCCcccccchhhhhhhhcccccccchhhhhhhHHHHHHHHHHHHHhhcCcCeeeccCCCc-hhhcCCc
Q psy3513 24 GCPLPSTPIDASILHDEVTQSLNVEDGLDAMNHMAHDAVEHAEEFVRKVWQASWNVCHFQHLPQ-WLQDNDF 94 (140)
Q Consensus 24 ~cp~p~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~e~a~~~~~~v~~~~~~Ll~~~eLP~-wlrdN~y 94 (140)
+|.++-.-.|.+++|+||--.|-..=+ |=+..|||+ ||-.|+|
T Consensus 154 ~~~~~~~~~D~d~iDEevL~sLv~ElG----------------------------Ldr~~ELPEL~LgqnEf 197 (214)
T PF04487_consen 154 APALPPNVIDTDLIDEEVLMSLVVELG----------------------------LDRVQELPELWLGQNEF 197 (214)
T ss_dssp ---------S-SSS-CCHHHHHHHHHT----------------------------CCC-SS-----TTSCCC
T ss_pred CCCCCCCCccccccCHHHHHHHHHHHC----------------------------cHHHHhChHHHcCCCcc
Confidence 455566667777788777555521112 334578898 8888887
No 3
>PF02380 Papo_T_antigen: T-antigen specific domain; InterPro: IPR003354 This domain represents a conserved region in papovavirus small and middle T-antigens. It is found as the N-terminal domain in the small T-antigen, and is centrally located in the middle T-antigen.; PDB: 2PF4_G 2PKG_D.
Probab=27.43 E-value=30 Score=25.54 Aligned_cols=24 Identities=17% Similarity=0.501 Sum_probs=19.6
Q ss_pred HHHHHHHHH--hhhhHHHHHHHHHHH
Q psy3513 108 ECFKSIFRV--HTETGNIWTHLLDIL 131 (140)
Q Consensus 108 ~C~kSlF~~--HNETvNIWTHLig~v 131 (140)
+|+.-+|.+ .+||++-|+++||-+
T Consensus 60 kCy~~WFG~~~~~esf~~W~~iI~~t 85 (92)
T PF02380_consen 60 KCYRLWFGLPLTWESFQWWKKIIGET 85 (92)
T ss_dssp HHHHHHCT--SSHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhC
Confidence 588888764 899999999999854
No 4
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=27.10 E-value=25 Score=24.23 Aligned_cols=17 Identities=18% Similarity=0.575 Sum_probs=14.2
Q ss_pred CcCeeeccCCCchhhcC
Q psy3513 76 SWNVCHFQHLPQWLQDN 92 (140)
Q Consensus 76 ~~~Ll~~~eLP~wlrdN 92 (140)
..+|+.-++||+|++.+
T Consensus 17 p~RLm~e~ELPe~~~~d 33 (74)
T PF14619_consen 17 PSRLMEESELPEWYRED 33 (74)
T ss_pred CccccchhhchHHHHhc
Confidence 35899999999998753
No 5
>PF04195 Transposase_28: Putative gypsy type transposon; InterPro: IPR007321 This domain is found in a family of plant gene products and is thought to be related to gypsy type transposons. There is a domain of unknown function, (IPR007228 from INTERPRO), at the C terminus of the proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.28 E-value=66 Score=26.04 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=36.0
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHH--HhhhhHHHHHHHHHHHHHh
Q psy3513 92 NDFLHTGHRPPLYTFKECFKSIFR--VHTETGNIWTHLLDILNKP 134 (140)
Q Consensus 92 N~yIltGYR~~~~S~~~C~kSlF~--~HNETvNIWTHLig~v~f~ 134 (140)
-.|+..|.|+|...|-.-+.-.|. +|+=|-|-|.++..|+..|
T Consensus 60 ~~f~~~Gl~~P~~~f~~~vL~~y~v~l~~L~Pnai~~laiF~~lc 104 (181)
T PF04195_consen 60 ADFFEAGLRPPCSPFLREVLRFYGVELPQLNPNAIARLAIFAWLC 104 (181)
T ss_pred hHHhhcCccCCchHHHHHHHHHhCccccccChHHHHHHHHHHHHH
Confidence 578999999998777777777766 5888999999999888776
No 6
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=20.35 E-value=2.3e+02 Score=20.05 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q psy3513 105 TFKECFKSIFRVHTETGNIWTHLLDILNKPL 135 (140)
Q Consensus 105 S~~~C~kSlF~~HNETvNIWTHLig~v~f~~ 135 (140)
|+.+=+.---.-|...+|...|++|.-++.+
T Consensus 3 ~~~~~~~~Y~~~H~~~~n~~lH~igvp~~~~ 33 (95)
T PF06127_consen 3 SLEEFFAFYLSYHRNPINRALHFIGVPLIIF 33 (95)
T ss_pred CHHHHHHHHHHHcCCHhhHHHHHHHHHHHHH
Confidence 4444455455579999999999998655544
No 7
>PF03694 Erg28: Erg28 like protein; InterPro: IPR005352 This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In Saccharomyces cerevisiae (Baker's yeast) they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins []. The family contains a conserved arginine and histidine that may be functionally important.; GO: 0016021 integral to membrane
Probab=17.07 E-value=1.4e+02 Score=22.41 Aligned_cols=32 Identities=6% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhH---HHHHHHHHHHHHhhhhh
Q psy3513 107 KECFKSIFRVHTETG---NIWTHLLDILNKPLQNM 138 (140)
Q Consensus 107 ~~C~kSlF~~HNETv---NIWTHLig~v~f~~~~~ 138 (140)
--|+-..+.+||.++ -+||.++++..|.....
T Consensus 57 ~ir~~~Ay~i~n~~lY~lt~~SfviAl~HF~sE~l 91 (111)
T PF03694_consen 57 IIRLYCAYNIHNKPLYDLTFWSFVIALGHFLSEWL 91 (111)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788999975 69999999999876544
No 8
>PHA02977 hypothetical protein; Provisional
Probab=14.76 E-value=46 Score=27.38 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=9.4
Q ss_pred CCcccCCCCCC
Q psy3513 92 NDFLHTGHRPP 102 (140)
Q Consensus 92 N~yIltGYR~~ 102 (140)
||+|.-||-..
T Consensus 164 ~phitigyv~~ 174 (201)
T PHA02977 164 CPHITIGYVKA 174 (201)
T ss_pred CCceEEEeecc
Confidence 89999999763
No 9
>PRK03968 DNA primase large subunit; Validated
Probab=14.55 E-value=87 Score=28.72 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=13.7
Q ss_pred cCeeeccCCCchhhc-CCcccCCCC
Q psy3513 77 WNVCHFQHLPQWLQD-NDFLHTGHR 100 (140)
Q Consensus 77 ~~Ll~~~eLP~wlrd-N~yIltGYR 100 (140)
..-+..+-.|+..|. =.-|.+|=|
T Consensus 240 ~g~l~~e~fPPCik~~l~gv~sG~r 264 (399)
T PRK03968 240 AGKLRPEAFPPCIRNTLEGVPSGGR 264 (399)
T ss_pred CCCCChhhCChhHHHHHhccccccc
Confidence 445667777887764 123445543
No 10
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=14.27 E-value=3.3e+02 Score=19.79 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=38.1
Q ss_pred hhHhhhHHhhh-cCCCCCCCCCCCcccccchhhhhhhhcccccccchhhhhhhHHHHHHHHHHHHHh
Q psy3513 8 IWELLEDELAE-DDRDIGCPLPSTPIDASILHDEVTQSLNVEDGLDAMNHMAHDAVEHAEEFVRKVW 73 (140)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~cp~p~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~e~a~~~~~~v~ 73 (140)
++++|.+++++ .-..+.-|+|-|-.+. .--++.++||. +.|. .....+||+|-..+.
T Consensus 2 lk~lL~~ml~~ip~~~~kvPilGty~nt-~sG~~Iv~~L~--~n~~------~~s~~~aE~fGQdLv 59 (84)
T cd04436 2 LKELLAAMLKEIPLADYKVPILGTYQNT-SSGSEIVSWLQ--ENMP------EKDLDAAEAFGQDLL 59 (84)
T ss_pred HHHHHHHHHHhCCCccceecccccccCc-ccHHHHHHHHH--HcCC------CCCHHHHHHHHHHHH
Confidence 67889999988 4456888999987744 45677888883 2222 244456666655554
Done!