Query psy3513
Match_columns 140
No_of_seqs 129 out of 560
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 18:35:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jmf_B Neurogenic locus notch 21.3 55 0.0019 18.2 1.8 16 97-113 8-23 (26)
2 2zqe_A MUTS2 protein; alpha/be 14.6 70 0.0024 21.2 1.5 49 49-97 5-63 (83)
3 2l61_A EC protein I/II; metall 9.7 67 0.0023 18.1 0.1 10 21-30 6-15 (26)
4 1eze_A Cholesteryl ester trans 9.5 2.7E+02 0.0093 16.6 2.8 27 50-76 7-33 (38)
5 2gqb_A Conserved hypothetical 8.6 1.2E+02 0.004 22.9 1.1 8 120-127 104-111 (130)
6 1uru_A Amphiphysin; endocytosi 7.9 4.3E+02 0.015 19.3 4.0 26 106-131 204-233 (244)
7 2l0z_A Glycoprotein G2; zinc-b 7.6 1.3E+02 0.0046 18.6 0.8 9 22-30 9-17 (42)
8 1jr8_A ERV2 protein, mitochond 7.6 3.2E+02 0.011 19.1 3.0 22 102-124 68-89 (117)
9 1pav_A Hypothetical protein TA 7.4 1.5E+02 0.005 18.8 1.0 11 19-29 10-20 (78)
10 1wwp_A Hypothetical protein TT 7.3 4.9E+02 0.017 17.6 3.9 32 97-130 49-83 (119)
No 1
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=21.27 E-value=55 Score=18.24 Aligned_cols=16 Identities=31% Similarity=0.852 Sum_probs=12.0
Q ss_pred CCCCCCCCCHHHHHHHH
Q psy3513 97 TGHRPPLYTFKECFKSI 113 (140)
Q Consensus 97 tGYR~~~~S~~~C~kSl 113 (140)
+|-..+ +||..|+|..
T Consensus 8 tgakqp-psyedcik~~ 23 (26)
T 2jmf_B 8 TGAKQP-PSYEDCIKXX 23 (26)
T ss_pred CCCCCC-CCHHHHHHhh
Confidence 566666 5899999964
No 2
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=14.62 E-value=70 Score=21.21 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=28.9
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHhhcCcCeee----------ccCCCchhhcCCcccC
Q psy3513 49 DGLDAMNHMAHDAVEHAEEFVRKVWQASWNVCH----------FQHLPQWLQDNDFLHT 97 (140)
Q Consensus 49 ~~~d~~~~~~~~~~e~a~~~~~~v~~~~~~Ll~----------~~eLP~wlrdN~yIlt 97 (140)
.++|=-|.....|.....+|+.....++.+.+. ...++.|++.+|++.+
T Consensus 5 ~~lDLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHGkG~GvLr~~V~~~L~~~~~V~~ 63 (83)
T 2zqe_A 5 KEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVES 63 (83)
T ss_dssp CEEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCSTTSHHHHHHHHHHHHCTTEEE
T ss_pred cEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhcCCceeE
Confidence 344433444555666677777666554443222 4567888888877765
No 3
>2l61_A EC protein I/II; metallothionein, wheat EC-1, Zn binding, metal-thiolate CLUS metal binding protein; NMR {Triticum aestivum} PDB: 2l62_A
Probab=9.73 E-value=67 Score=18.12 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=6.7
Q ss_pred CCCCCCCCCC
Q psy3513 21 RDIGCPLPST 30 (140)
Q Consensus 21 ~~~~cp~p~~ 30 (140)
|.-|||+|-.
T Consensus 6 d~cGCpvPCp 15 (26)
T 2l61_A 6 DKCGCAVPCP 15 (26)
T ss_dssp GGGSSCSSCS
T ss_pred CCCCCcccCC
Confidence 3458998853
No 4
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=9.47 E-value=2.7e+02 Score=16.64 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=22.3
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhhcC
Q psy3513 50 GLDAMNHMAHDAVEHAEEFVRKVWQAS 76 (140)
Q Consensus 50 ~~d~~~~~~~~~~e~a~~~~~~v~~~~ 76 (140)
-+|++...+.+..++++.+..++.++.
T Consensus 7 ~fdkvke~g~tl~eK~k~~~~~i~~Se 33 (38)
T 1eze_A 7 ALDKLKEFGNTLEDKAWEVINRIKQSE 33 (38)
T ss_dssp SSHHHHHHTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 346788888999999999999998764
No 5
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=8.64 E-value=1.2e+02 Score=22.88 Aligned_cols=8 Identities=50% Similarity=0.941 Sum_probs=6.5
Q ss_pred hHHHHHHH
Q psy3513 120 TGNIWTHL 127 (140)
Q Consensus 120 TvNIWTHL 127 (140)
+.|||.|=
T Consensus 104 ~mNiwLHk 111 (130)
T 2gqb_A 104 SMNIWLHK 111 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 58999984
No 6
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=7.87 E-value=4.3e+02 Score=19.31 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=19.5
Q ss_pred HHHHHHHHHH----HhhhhHHHHHHHHHHH
Q psy3513 106 FKECFKSIFR----VHTETGNIWTHLLDIL 131 (140)
Q Consensus 106 ~~~C~kSlF~----~HNETvNIWTHLig~v 131 (140)
+..||.+++. +|++...+|..|-+.+
T Consensus 204 ~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~ 233 (244)
T 1uru_A 204 LVTNLQTLFATEQVFHNETAKIYSELEAIV 233 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777754 7889999999987754
No 7
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=7.59 E-value=1.3e+02 Score=18.56 Aligned_cols=9 Identities=44% Similarity=1.043 Sum_probs=6.5
Q ss_pred CCCCCCCCC
Q psy3513 22 DIGCPLPST 30 (140)
Q Consensus 22 ~~~cp~p~~ 30 (140)
+.+||.|-.
T Consensus 9 Ge~CPkPHR 17 (42)
T 2l0z_A 9 GEACPLPHR 17 (42)
T ss_dssp SSSCCTTSC
T ss_pred CCCCCCCce
Confidence 568998854
No 8
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=7.57 E-value=3.2e+02 Score=19.12 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHhhhhHHHH
Q psy3513 102 PLYTFKECFKSIFRVHTETGNIW 124 (140)
Q Consensus 102 ~~~S~~~C~kSlF~~HNETvNIW 124 (140)
...|-..-..-+...||+ ||--
T Consensus 68 ~v~sr~~~~lWLw~~HN~-VN~r 89 (117)
T 1jr8_A 68 QTSSRTAAAMWGCHIHNK-VNEY 89 (117)
T ss_dssp CCSSHHHHHHHHHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHH-HHHH
Confidence 345777778888889998 7753
No 9
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=7.40 E-value=1.5e+02 Score=18.75 Aligned_cols=11 Identities=45% Similarity=0.715 Sum_probs=8.1
Q ss_pred cCCCCCCCCCC
Q psy3513 19 DDRDIGCPLPS 29 (140)
Q Consensus 19 ~~~~~~cp~p~ 29 (140)
|-.+-.||.|-
T Consensus 10 D~rGl~CP~Pv 20 (78)
T 1pav_A 10 DARGSYCPGPL 20 (78)
T ss_dssp CBSSCSSCTTH
T ss_pred ECCCCCCCHHH
Confidence 34578899995
No 10
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=7.30 E-value=4.9e+02 Score=17.63 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=23.6
Q ss_pred CCCCCCCCCHHHHHHHHHH---HhhhhHHHHHHHHHH
Q psy3513 97 TGHRPPLYTFKECFKSIFR---VHTETGNIWTHLLDI 130 (140)
Q Consensus 97 tGYR~~~~S~~~C~kSlF~---~HNETvNIWTHLig~ 130 (140)
.|++ + .|++.||+-+|. +-++....|--.+++
T Consensus 49 ~g~~-~-~s~rd~~r~a~~~glI~~~~~~~w~~m~~~ 83 (119)
T 1wwp_A 49 EGLE-G-ASPKGVIRLAREVGLLRDEEARLALGMVDD 83 (119)
T ss_dssp HCCC-C-CSHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hCCC-C-CCHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 4777 4 589999999998 356666677776664
Done!