Query psy3513
Match_columns 140
No_of_seqs 129 out of 560
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 18:35:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3513.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3513hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gqba1 a.282.1.1 (A:1-130) Hy 8.4 57 0.0041 22.8 1.1 8 120-127 104-111 (130)
2 d1pava_ d.68.3.3 (A:) Hypothet 8.3 59 0.0043 19.3 1.0 15 19-33 10-24 (78)
3 d1vf6c_ a.194.1.1 (C:) Maguk p 7.8 75 0.0055 18.8 1.3 9 110-118 40-48 (51)
4 d1lbua2 d.65.1.1 (A:84-213) Zn 7.6 34 0.0025 22.9 -0.5 8 95-102 50-57 (130)
5 d2ckca1 d.76.2.1 (A:2563-2622) 6.6 26 0.0019 21.5 -1.4 14 82-95 26-39 (60)
6 d2fd5a2 a.121.1.1 (A:77-180) P 6.2 46 0.0034 21.6 -0.3 22 20-41 23-44 (104)
7 d1ax8a_ a.26.1.1 (A:) Leptin ( 6.0 1E+02 0.0074 21.7 1.5 13 23-35 92-104 (144)
8 d2outa2 d.344.1.1 (A:4-70) Mu- 5.8 80 0.0058 19.5 0.7 12 95-106 13-24 (67)
9 d1pixa3 c.14.1.4 (A:288-586) G 5.6 2E+02 0.014 21.5 3.1 37 54-90 96-132 (299)
10 d1ek6a_ c.2.1.2 (A:) Uridine d 5.4 1.2E+02 0.0085 21.3 1.5 32 85-117 304-337 (346)
No 1
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=8.36 E-value=57 Score=22.78 Aligned_cols=8 Identities=50% Similarity=0.941 Sum_probs=6.3
Q ss_pred hHHHHHHH
Q psy3513 120 TGNIWTHL 127 (140)
Q Consensus 120 TvNIWTHL 127 (140)
+.|||.|=
T Consensus 104 ~mNiwLhk 111 (130)
T d2gqba1 104 SMNIWLHK 111 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 58999883
No 2
>d1pava_ d.68.3.3 (A:) Hypothetical protein Ta1170/Ta1414 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=8.31 E-value=59 Score=19.31 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=9.9
Q ss_pred cCCCCCCCCCCCccc
Q psy3513 19 DDRDIGCPLPSTPID 33 (140)
Q Consensus 19 ~~~~~~cp~p~~~~~ 33 (140)
|-.+-.||.|.-.--
T Consensus 10 D~~G~~CP~Pvl~~k 24 (78)
T d1pava_ 10 DARGSYCPGPLMELI 24 (78)
T ss_dssp CBSSCSSCTTHHHHH
T ss_pred ECCCCCCCHHHHHHH
Confidence 345788999964433
No 3
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.85 E-value=75 Score=18.77 Aligned_cols=9 Identities=33% Similarity=1.032 Sum_probs=5.8
Q ss_pred HHHHHHHhh
Q psy3513 110 FKSIFRVHT 118 (140)
Q Consensus 110 ~kSlF~~HN 118 (140)
|.+.|.+||
T Consensus 40 FQnAfkIHN 48 (51)
T d1vf6c_ 40 FQNAFKIHN 48 (51)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 456666776
No 4
>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]}
Probab=7.58 E-value=34 Score=22.93 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=7.0
Q ss_pred ccCCCCCC
Q psy3513 95 LHTGHRPP 102 (140)
Q Consensus 95 IltGYR~~ 102 (140)
|.+|||.+
T Consensus 50 ItSgYRsp 57 (130)
T d1lbua2 50 VNGGFRSV 57 (130)
T ss_dssp EEECCCCH
T ss_pred EEEEEeCH
Confidence 77999986
No 5
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.63 E-value=26 Score=21.48 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=10.0
Q ss_pred ccCCCchhhcCCcc
Q psy3513 82 FQHLPQWLQDNDFL 95 (140)
Q Consensus 82 ~~eLP~wlrdN~yI 95 (140)
..+|..||+.||-.
T Consensus 26 ~~~L~~WL~~hP~y 39 (60)
T d2ckca1 26 NKDLVEWLKLHPTY 39 (60)
T ss_dssp HHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHCCCc
Confidence 35667899888854
No 6
>d2fd5a2 a.121.1.1 (A:77-180) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.23 E-value=46 Score=21.64 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCcccccchhhhh
Q psy3513 20 DRDIGCPLPSTPIDASILHDEV 41 (140)
Q Consensus 20 ~~~~~cp~p~~~~~~~~~~~~~ 41 (140)
..+.|||+|.--.|-.--+.++
T Consensus 23 ~~~~GCplaaL~~eiaR~~~~v 44 (104)
T d2fd5a2 23 QVDAGCPLPATLAEVARLPEGF 44 (104)
T ss_dssp CSSSCCSHHHHGGGGGGSCHHH
T ss_pred CCCCCCcHHHHHHHHccCCHHH
Confidence 4568999997655544344444
No 7
>d1ax8a_ a.26.1.1 (A:) Leptin (obesity protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.98 E-value=1e+02 Score=21.68 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=10.5
Q ss_pred CCCCCCCCccccc
Q psy3513 23 IGCPLPSTPIDAS 35 (140)
Q Consensus 23 ~~cp~p~~~~~~~ 35 (140)
-+||+|.+...+.
T Consensus 92 ~~Cp~~~~~~~~t 104 (144)
T d1ax8a_ 92 KSCHLPEASGLET 104 (144)
T ss_dssp TTCCCCCCCCCSC
T ss_pred CCCCCCCCCCcch
Confidence 5899999887765
No 8
>d2outa2 d.344.1.1 (A:4-70) Mu-like prophage FluMu protein gp35, HI1506 {Haemophilus influenzae [TaxId: 727]}
Probab=5.82 E-value=80 Score=19.53 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=9.0
Q ss_pred ccCCCCCCCCCH
Q psy3513 95 LHTGHRPPLYTF 106 (140)
Q Consensus 95 IltGYR~~~~S~ 106 (140)
|..|||+...|+
T Consensus 13 iKdGYRRAGfSl 24 (67)
T d2outa2 13 IKEGYRRAGFSF 24 (67)
T ss_dssp SCSCCCCSSSCC
T ss_pred cchhhhhcCeee
Confidence 589999875554
No 9
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}
Probab=5.65 E-value=2e+02 Score=21.47 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=30.1
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCcCeeeccCCCchhh
Q psy3513 54 MNHMAHDAVEHAEEFVRKVWQASWNVCHFQHLPQWLQ 90 (140)
Q Consensus 54 ~~~~~~~~~e~a~~~~~~v~~~~~~Ll~~~eLP~wlr 90 (140)
-|..-..++.|+.+|++-.-+.+.+++.+.+.|.++-
T Consensus 96 ~G~l~~~~a~K~~rfi~lc~~~~iPlv~l~D~pGf~~ 132 (299)
T d1pixa3 96 GGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDV 132 (299)
T ss_dssp TTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECC
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCeEEEEEeCCCccc
Confidence 4555677888999999988888899999999988653
No 10
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.44 E-value=1.2e+02 Score=21.30 Aligned_cols=32 Identities=9% Similarity=0.261 Sum_probs=22.5
Q ss_pred CCchhhcCCccc--CCCCCCCCCHHHHHHHHHHHh
Q psy3513 85 LPQWLQDNDFLH--TGHRPPLYTFKECFKSIFRVH 117 (140)
Q Consensus 85 LP~wlrdN~yIl--tGYR~~~~S~~~C~kSlF~~H 117 (140)
.+.+.-|+..+. -||+|.. |+.++++.+..|.
T Consensus 304 ~~~~~~d~~k~~~~lgw~p~~-slee~I~~~i~w~ 337 (346)
T d1ek6a_ 304 VAACYANPSLAQEELGWTAAL-GLDRMCEDLWRWQ 337 (346)
T ss_dssp CSEECBCCHHHHHTTCCCCCC-CHHHHHHHHHHHH
T ss_pred CCEeeECHHHHHHHHCCCcCC-CHHHHHHHHHHHH
Confidence 344444555565 3999974 8999999887763
Done!