RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3513
         (140 letters)



>3b9o_A Alkane monoxygenase; LADA, alkane hydroxylase, monooxygenase,
           plasmid, oxidoreductase; HET: FMN; 1.90A {Geobacillus
           thermodenitrificans} PDB: 3b9n_A*
          Length = 440

 Score = 28.8 bits (65), Expect = 0.66
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 6/32 (18%)

Query: 50  GLDAMNHMAHDA-VEHAEEF---VRKVWQASW 77
           G+     + HD   + A+E+     K+W+ SW
Sbjct: 147 GIKK--ILEHDERYDLADEYLEVCYKLWEGSW 176


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 0.92
 Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 9/28 (32%)

Query: 12 LEDEL---AEDDRDIGCPLPSTPIDASI 36
          L+  L   A+D        P+  I A++
Sbjct: 25 LQASLKLYADDSA------PALAIKATM 46


>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A
          {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
          Length = 286

 Score = 25.3 bits (55), Expect = 7.5
 Identities = 10/55 (18%), Positives = 20/55 (36%)

Query: 28 PSTPIDASILHDEVTQSLNVEDGLDAMNHMAHDAVEHAEEFVRKVWQASWNVCHF 82
             PI   +L  + T++L  +        +A+  +   EEF     +  +    F
Sbjct: 7  HGKPIPNPLLGLDSTENLYFQGIDPFTMRIAYAGLRRKEEFKALAEKLGFTPLLF 61


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,298,071
Number of extensions: 123259
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 11
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)