RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3513
         (140 letters)



>d2fd5a2 a.121.1.1 (A:77-180) Probable transcriptional regulator
          PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 104

 Score = 28.5 bits (64), Expect = 0.14
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 12 LEDELAEDDRDIGCPLPSTPIDASILHDEVTQSLNVEDGLDAMNHMAHDAVEHAEE 67
          L  +  +   D GCPLP+T  + + L +   + L     ++ M     ++ E  + 
Sbjct: 15 LSRKHRDAQVDAGCPLPATLAEVARLPEGFREVL--SRHVEIMVTSLAESPEETDV 68


>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 80

 Score = 23.3 bits (50), Expect = 6.9
 Identities = 5/38 (13%), Positives = 9/38 (23%)

Query: 38 HDEVTQSLNVEDGLDAMNHMAHDAVEHAEEFVRKVWQA 75
          +D V +          M  +     E   E +      
Sbjct: 26 YDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGK 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 576,486
Number of extensions: 25219
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 9
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.9 bits)