BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3514
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
Query: 5 RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
+RC P+SIRL+DN Q + G +P DGLKK Y+TK GF +++ AT+LF
Sbjct: 411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
EGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY IG+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 124 SVPWDKTVLLCINVKKRLTREC 145
S PWD+ V LC NVK+R+ REC
Sbjct: 531 SAPWDRVVDLCRNVKERIRREC 552
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
Query: 5 RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
+RC P+SIRL+DN Q + G +P DGLKK Y+TK GF +++ AT+LF
Sbjct: 411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
EGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY IG+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 124 SVPWDKTVLLCINVKKRLTREC 145
S PWD+ V LC NVK+R+ REC
Sbjct: 531 SAPWDRVVDLCRNVKERIRREC 552
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 163 bits (412), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 5 RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
+RC P+SI L+DN Q + G +P DGLKK Y+TK GF +++ AT+LF
Sbjct: 411 QRCAPASIHLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
EGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY IG+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 124 SVPWDKTVLLCINVKKRLTREC 145
S PWD+ V LC NVK+R+ REC
Sbjct: 531 SAPWDRVVDLCRNVKERIRREC 552
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 9 PSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE 68
P+ IR+ D + + ++P G + T + K Y+ I F +C + + FEG +
Sbjct: 345 PTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 404
Query: 69 DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWD 128
V + ++ I + G + G+ Y + YIRDF D+ D ET+V +
Sbjct: 405 VVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYA 464
Query: 129 KTVLLCINVKKRLTRECTGRWLPVLV 154
L + K+ + + +P +
Sbjct: 465 NLQTLWKDAKQTFVKHFKDQGIPAWI 490
>pdb|3HR5|L Chain L, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|A Chain A, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|P Chain P, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|Q Chain Q, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
Length = 219
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDYYFIGDSFETSVPW 127
IY ++ R+ G+P+ S G T I+ ++ DFA Y S T VPW
Sbjct: 53 IYKVSNRFSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC----SQNTLVPW 101
>pdb|3GKW|L Chain L, Crystal Structure Of The Fab Fragment Of Nimotuzumab. An
Anti- Epidermal Growth Factor Receptor Antibody
Length = 219
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDYYFIGDSFETSVPWDKTVLLC 134
IY ++ R+ G+P+ S G T+ I+ ++ D A Y F + VPW
Sbjct: 53 IYKVSNRFSGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCFQ----YSHVPW----TFG 104
Query: 135 INVKKRLTRE 144
K ++TRE
Sbjct: 105 QGTKLQITRE 114
>pdb|2H1P|L Chain L, The Three-Dimensional Structures Of A Polysaccharide
Binding Antibody To Cryptococcus Neoformans And Its
Complex With A Peptide From A Phage Display Library:
Implications For The Identification Of Peptide Mimotopes
Length = 219
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPW 127
IY ++ R+ G+P S G T I+ + YF S T VPW
Sbjct: 53 IYKVSNRFSGVPDKFSGSGSGTDFTLKISRVEAEDQGVYFCSQS--THVPW 101
>pdb|4FAB|L Chain L, Three-Dimensional Structure Of A Fluorescein-Fab Complex
Crystallized In 2-Methyl-2,4-Pentanediol
Length = 219
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPW 127
IY ++ R+ G+P S G T I+ + YF S T VPW
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQS--THVPW 101
>pdb|1FLR|L Chain L, 4-4-20 Fab Fragment
Length = 219
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPW 127
IY ++ R+ G+P S G T I+ + YF S T VPW
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQS--THVPW 101
>pdb|1T66|L Chain L, The Structure Of Fab With Intermediate Affinity For
Fluorescein.
pdb|1T66|C Chain C, The Structure Of Fab With Intermediate Affinity For
Fluorescein
Length = 219
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPW 127
IY ++ R+ G+P S G T I+ + YF S T VPW
Sbjct: 53 IYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQS--THVPW 101
>pdb|1S3K|L Chain L, Crystal Structure Of A Humanized Fab (Hu3s193) In Complex
With The Lewis Y Tetrasaccharide
pdb|3EYV|L Chain L, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
pdb|3EYV|A Chain A, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
Length = 219
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDYYFIGD 119
IY ++ R+ G+P+ S G T+ I+ ++ D A Y F G
Sbjct: 53 IYKVSNRFSGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCFQGS 97
>pdb|3N85|L Chain L, Crystallographic Trimer Of Her2 Extracellular Regions In
Complex With Tryptophan-Rich Antibody Fragment
Length = 217
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDY 114
IYS + Y G+P+ S R G T I+ ++ DFA Y
Sbjct: 48 IYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYY 87
>pdb|3UJJ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 4025 In Complex
With Con A Peptide
Length = 213
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR-DFACDYY 115
IY +KR GIP S R G M T I+ + D DYY
Sbjct: 47 IYEDSKRPSGIPERFSGSRSGTMATLTISGAQVDDEADYY 86
>pdb|3IVK|L Chain L, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
pdb|3IVK|B Chain B, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
Length = 213
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDY 114
IYS + Y G+P+ S R G T I+ ++ DFA Y
Sbjct: 49 IYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYY 88
>pdb|1L7I|L Chain L, Crystal Structure Of The Anti-Erbb2 Fab2c4
pdb|1S78|C Chain C, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
pdb|1S78|E Chain E, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
Length = 214
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFA---CDYYFI 117
IYS + RY G+P+ S G T I+ ++ DFA C Y+I
Sbjct: 48 IYSASYRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYI 93
>pdb|1D02|A Chain A, Crystal Structure Of Muni Restriction Endonuclease In
Complex With Cognate Dna
pdb|1D02|B Chain B, Crystal Structure Of Muni Restriction Endonuclease In
Complex With Cognate Dna
Length = 202
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 34 ELLTDGLKKLYVTKILGFRDDEMCAATVLFEGD 66
+L T GL K Y T I G D+E+ V+FEGD
Sbjct: 124 KLFTPGLLKAYRT-IGGINDEEILPFWVVFEGD 155
>pdb|2R8S|L Chain L, High Resolution Structure Of A Specific Synthetic Fab
Bound To P4-P6 Rna Ribozyme Domain
Length = 214
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDYYFIGDSFETSV 125
IYS + Y G+P+ S R G T I+ ++ DFA Y+ S+ + +
Sbjct: 48 IYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFAT--YYCQQSYSSPI 96
>pdb|3PGF|L Chain L, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 215
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDY 114
IYS + Y G+P+ S R G T I+ ++ DFA Y
Sbjct: 49 IYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYY 88
>pdb|3DVN|A Chain A, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|L Chain L, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 217
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDY 114
IYS + Y G+P+ S R G T I+ ++ DFA Y
Sbjct: 49 IYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYY 88
>pdb|3PNW|A Chain A, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|D Chain D, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|G Chain G, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|J Chain J, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|M Chain M, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|P Chain P, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|S Chain S, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|V Chain V, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
Length = 228
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFACDY 114
IYS + Y G+P+ S R G T I+ ++ DFA Y
Sbjct: 49 IYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYY 88
>pdb|2QR0|A Chain A, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|E Chain E, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|G Chain G, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|K Chain K, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|M Chain M, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|Q Chain Q, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|S Chain S, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|W Chain W, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
Length = 213
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 77 IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR--DFA 111
IYS + Y G+P+ S R G T I+ ++ DFA
Sbjct: 48 IYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFA 84
>pdb|2XVN|A Chain A, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
pdb|2XVN|B Chain B, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
pdb|2XVN|C Chain C, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
Length = 309
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 81 AKRYGGIPAGESNGRRGYMLT 101
AK Y G+PA E+ +GY LT
Sbjct: 239 AKLYVGLPASETAANQGYYLT 259
>pdb|2XUC|A Chain A, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XUC|B Chain B, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XUC|C Chain C, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XVP|A Chain A, Chia1 From Aspergillus Fumigatus, Apostructure
pdb|2XVP|B Chain B, Chia1 From Aspergillus Fumigatus, Apostructure
pdb|2XTK|A Chain A, Chia1 From Aspergillus Fumigatus In Complex With
Acetazolamide
pdb|2XTK|B Chain B, Chia1 From Aspergillus Fumigatus In Complex With
Acetazolamide
Length = 310
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 81 AKRYGGIPAGESNGRRGYMLT 101
AK Y G+PA E+ +GY LT
Sbjct: 240 AKLYVGLPASETAANQGYYLT 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,142,571
Number of Sequences: 62578
Number of extensions: 221902
Number of successful extensions: 523
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 23
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)